Query 007384
Match_columns 605
No_of_seqs 749 out of 3941
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 22:51:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3E-87 6.6E-92 723.1 71.6 580 24-603 369-949 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 2.4E-68 5.3E-73 588.1 48.6 520 29-580 55-661 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.5E-64 9.8E-69 554.2 48.5 507 27-571 150-727 (857)
4 PLN03218 maturation of RBCL 1; 100.0 6.6E-62 1.4E-66 526.4 60.5 465 30-503 411-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 7.6E-60 1.7E-64 508.5 49.0 456 71-569 97-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-57 2.3E-62 491.8 48.2 457 32-505 130-613 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-27 3.4E-32 269.3 60.6 512 31-564 335-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-26 4.5E-31 260.2 61.7 520 22-562 360-898 (899)
9 PRK11447 cellulose synthase su 99.9 1.4E-18 2.9E-23 197.6 57.2 563 20-599 57-741 (1157)
10 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.8E-25 190.9 36.4 301 101-409 44-353 (389)
11 PRK11788 tetratricopeptide rep 99.9 4.3E-20 9.2E-25 187.2 36.2 303 134-445 42-354 (389)
12 KOG4626 O-linked N-acetylgluco 99.9 6.3E-20 1.4E-24 177.0 32.9 433 29-505 52-492 (966)
13 PRK11447 cellulose synthase su 99.9 1.1E-18 2.5E-23 198.2 48.8 388 34-438 278-700 (1157)
14 KOG4626 O-linked N-acetylgluco 99.9 5.2E-20 1.1E-24 177.6 30.4 391 34-445 91-490 (966)
15 PRK15174 Vi polysaccharide exp 99.9 5.7E-18 1.2E-22 180.1 47.0 326 100-437 50-380 (656)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-17 1E-21 173.7 49.2 394 32-438 134-571 (615)
17 PRK15174 Vi polysaccharide exp 99.9 1.6E-17 3.5E-22 176.6 44.8 321 71-402 52-380 (656)
18 PRK10049 pgaA outer membrane p 99.9 5E-17 1.1E-21 176.6 46.8 402 29-445 18-461 (765)
19 TIGR00990 3a0801s09 mitochondr 99.8 5.3E-16 1.2E-20 165.7 50.1 332 97-437 132-536 (615)
20 PRK14574 hmsH outer membrane p 99.8 2.7E-15 6E-20 159.9 50.4 441 21-474 30-516 (822)
21 KOG4422 Uncharacterized conser 99.8 2.4E-15 5.2E-20 139.7 42.5 402 31-440 121-592 (625)
22 PRK10049 pgaA outer membrane p 99.8 2E-15 4.3E-20 164.3 44.5 367 65-444 19-426 (765)
23 PRK09782 bacteriophage N4 rece 99.8 6E-14 1.3E-18 152.9 54.4 501 37-571 56-711 (987)
24 PRK09782 bacteriophage N4 rece 99.8 1.5E-13 3.1E-18 150.0 54.5 159 20-190 73-275 (987)
25 KOG2002 TPR-containing nuclear 99.7 8.1E-14 1.8E-18 142.5 40.3 426 20-451 265-758 (1018)
26 KOG2002 TPR-containing nuclear 99.7 1.1E-13 2.5E-18 141.4 41.3 430 14-454 222-726 (1018)
27 PRK14574 hmsH outer membrane p 99.7 4.9E-13 1.1E-17 142.9 47.9 430 67-505 40-520 (822)
28 KOG2003 TPR repeat-containing 99.7 1.3E-13 2.8E-18 129.1 29.7 409 37-456 213-706 (840)
29 KOG4422 Uncharacterized conser 99.7 1.8E-11 4E-16 114.3 40.4 322 92-420 116-479 (625)
30 KOG1155 Anaphase-promoting com 99.6 1.7E-11 3.7E-16 115.7 38.8 292 135-436 235-534 (559)
31 KOG2076 RNA polymerase III tra 99.6 9.3E-12 2E-16 126.9 39.4 368 28-400 142-552 (895)
32 PF13429 TPR_15: Tetratricopep 99.6 6.6E-15 1.4E-19 141.3 12.4 258 100-365 16-274 (280)
33 KOG0495 HAT repeat protein [RN 99.6 4.2E-10 9.1E-15 110.7 44.8 423 28-467 409-842 (913)
34 KOG2076 RNA polymerase III tra 99.6 4.3E-11 9.2E-16 122.1 39.3 359 73-436 151-553 (895)
35 KOG0495 HAT repeat protein [RN 99.6 4.6E-09 9.9E-14 103.6 51.7 416 24-456 375-799 (913)
36 TIGR00540 hemY_coli hemY prote 99.6 1.2E-11 2.6E-16 125.0 34.9 289 74-366 97-397 (409)
37 KOG1155 Anaphase-promoting com 99.6 2.1E-10 4.6E-15 108.5 40.0 330 90-437 162-494 (559)
38 PF13429 TPR_15: Tetratricopep 99.6 1.4E-14 3E-19 139.1 12.8 259 30-296 13-275 (280)
39 PRK10747 putative protoheme IX 99.6 1.1E-11 2.4E-16 124.5 34.0 281 74-367 97-389 (398)
40 KOG1915 Cell cycle control pro 99.6 6.3E-10 1.4E-14 105.5 42.8 415 37-466 85-531 (677)
41 PRK10747 putative protoheme IX 99.6 1.7E-11 3.6E-16 123.3 34.3 282 105-399 97-386 (398)
42 COG2956 Predicted N-acetylgluc 99.5 1.5E-10 3.3E-15 104.6 33.9 221 105-333 48-278 (389)
43 TIGR00540 hemY_coli hemY prote 99.5 4.5E-11 9.8E-16 120.8 34.5 287 103-399 95-395 (409)
44 KOG2003 TPR repeat-containing 99.5 1.2E-10 2.7E-15 109.5 32.8 419 37-465 161-683 (840)
45 KOG1126 DNA-binding cell divis 99.5 1.9E-11 4E-16 121.0 25.0 283 142-438 334-620 (638)
46 KOG1126 DNA-binding cell divis 99.5 3.6E-11 7.9E-16 118.9 25.5 284 106-403 333-620 (638)
47 KOG1915 Cell cycle control pro 99.5 2E-08 4.3E-13 95.6 42.3 409 27-450 105-546 (677)
48 COG2956 Predicted N-acetylgluc 99.5 6.5E-10 1.4E-14 100.6 31.0 288 140-436 48-345 (389)
49 COG3071 HemY Uncharacterized e 99.4 9.6E-10 2.1E-14 102.6 32.5 284 105-400 97-387 (400)
50 KOG0547 Translocase of outer m 99.4 1.2E-09 2.6E-14 104.2 33.2 387 33-437 123-565 (606)
51 KOG1173 Anaphase-promoting com 99.4 5.4E-10 1.2E-14 108.5 30.3 284 159-454 241-532 (611)
52 COG3071 HemY Uncharacterized e 99.4 3.9E-09 8.5E-14 98.6 33.6 287 140-438 97-390 (400)
53 KOG1173 Anaphase-promoting com 99.4 2.5E-09 5.4E-14 104.0 31.4 288 122-419 239-532 (611)
54 PRK12370 invasion protein regu 99.4 9.8E-10 2.1E-14 115.5 29.9 249 74-334 274-536 (553)
55 KOG2047 mRNA splicing factor [ 99.4 8.3E-08 1.8E-12 94.8 40.4 412 34-452 111-630 (835)
56 KOG4318 Bicoid mRNA stability 99.4 5E-10 1.1E-14 113.9 25.8 86 301-389 201-286 (1088)
57 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 100.5 27.1 200 234-437 31-231 (234)
58 TIGR02521 type_IV_pilW type IV 99.3 2.3E-09 4.9E-14 100.0 27.3 197 128-329 32-228 (234)
59 PRK12370 invasion protein regu 99.3 3.8E-09 8.2E-14 111.1 31.3 250 194-454 253-519 (553)
60 PF13041 PPR_2: PPR repeat fam 99.3 5.5E-12 1.2E-16 84.8 6.5 50 372-421 1-50 (50)
61 KOG1174 Anaphase-promoting com 99.3 1.3E-07 2.8E-12 88.7 37.0 398 28-437 46-499 (564)
62 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.3E-16 82.7 6.8 50 160-209 1-50 (50)
63 KOG4318 Bicoid mRNA stability 99.3 2.9E-10 6.2E-15 115.6 18.6 274 113-424 11-286 (1088)
64 KOG2376 Signal recognition par 99.2 2.5E-06 5.5E-11 84.0 43.3 419 27-469 14-518 (652)
65 KOG1129 TPR repeat-containing 99.2 4.3E-09 9.3E-14 95.3 22.3 232 198-437 224-457 (478)
66 KOG1156 N-terminal acetyltrans 99.2 1.5E-06 3.3E-11 86.4 41.5 388 38-440 20-470 (700)
67 PF12569 NARP1: NMDA receptor- 99.2 2.3E-07 4.9E-12 94.5 35.4 290 137-437 14-333 (517)
68 KOG2047 mRNA splicing factor [ 99.2 7.2E-06 1.6E-10 81.6 46.7 465 9-503 12-585 (835)
69 KOG3785 Uncharacterized conser 99.2 1.2E-06 2.6E-11 80.7 34.9 377 32-432 29-451 (557)
70 KOG1129 TPR repeat-containing 99.2 1.3E-08 2.8E-13 92.3 22.0 229 166-402 227-457 (478)
71 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.7E-12 96.4 32.0 288 71-366 14-332 (517)
72 KOG0547 Translocase of outer m 99.2 7.7E-07 1.7E-11 85.5 34.8 154 280-437 337-490 (606)
73 KOG1840 Kinesin light chain [C 99.1 6.4E-08 1.4E-12 97.2 28.0 240 197-436 199-477 (508)
74 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.8E-12 95.0 30.0 242 127-400 199-476 (508)
75 KOG3785 Uncharacterized conser 99.1 8.5E-06 1.8E-10 75.2 36.2 406 27-454 57-504 (557)
76 KOG1156 N-terminal acetyltrans 99.1 1.2E-05 2.5E-10 80.4 39.2 349 74-438 20-434 (700)
77 PRK11189 lipoprotein NlpI; Pro 99.1 4.3E-07 9.2E-12 87.5 29.0 218 211-438 40-265 (296)
78 COG3063 PilF Tfp pilus assembl 99.0 3.7E-07 8E-12 79.4 24.8 198 236-437 37-235 (250)
79 PRK11189 lipoprotein NlpI; Pro 99.0 3E-07 6.6E-12 88.5 27.2 149 107-261 41-192 (296)
80 KOG1174 Anaphase-promoting com 99.0 1E-05 2.2E-10 76.4 34.5 292 105-409 209-504 (564)
81 cd05804 StaR_like StaR_like; a 99.0 4.5E-06 9.8E-11 83.4 35.6 304 128-437 7-335 (355)
82 KOG4162 Predicted calmodulin-b 99.0 1E-05 2.2E-10 82.4 36.5 391 35-437 333-782 (799)
83 COG3063 PilF Tfp pilus assembl 99.0 6.9E-07 1.5E-11 77.7 24.1 196 132-332 40-235 (250)
84 cd05804 StaR_like StaR_like; a 99.0 6.9E-06 1.5E-10 82.1 34.7 197 203-402 120-335 (355)
85 KOG0624 dsRNA-activated protei 98.9 2.7E-05 5.9E-10 71.7 32.2 317 22-369 35-371 (504)
86 KOG2376 Signal recognition par 98.9 3.9E-05 8.5E-10 75.9 35.4 395 21-435 42-517 (652)
87 KOG0624 dsRNA-activated protei 98.9 5E-05 1.1E-09 70.1 33.1 326 59-437 36-369 (504)
88 PRK04841 transcriptional regul 98.9 4.9E-05 1.1E-09 86.2 41.5 337 102-438 384-760 (903)
89 KOG0548 Molecular co-chaperone 98.8 3.8E-05 8.3E-10 75.2 31.8 377 32-444 9-425 (539)
90 KOG1127 TPR repeat-containing 98.8 2.6E-05 5.7E-10 81.5 32.2 75 38-114 471-548 (1238)
91 PF04733 Coatomer_E: Coatomer 98.8 4.8E-07 1E-11 85.8 18.1 252 30-296 6-263 (290)
92 PRK04841 transcriptional regul 98.8 0.00011 2.3E-09 83.5 39.1 332 72-403 385-760 (903)
93 PF04733 Coatomer_E: Coatomer 98.7 1.4E-06 3E-11 82.7 18.1 247 173-437 12-264 (290)
94 KOG1125 TPR repeat-containing 98.7 1.8E-06 3.8E-11 85.0 18.7 218 207-436 295-525 (579)
95 KOG4162 Predicted calmodulin-b 98.7 0.00027 5.9E-09 72.3 34.0 356 37-402 369-782 (799)
96 PLN02789 farnesyltranstransfer 98.7 4.5E-05 9.9E-10 73.4 27.4 211 98-316 43-267 (320)
97 KOG1070 rRNA processing protei 98.6 2.3E-05 5E-10 84.7 27.0 238 194-436 1455-1698(1710)
98 PF12854 PPR_1: PPR repeat 98.6 4E-08 8.7E-13 59.1 3.8 32 369-400 2-33 (34)
99 KOG4340 Uncharacterized conser 98.6 0.00014 2.9E-09 65.9 27.3 188 30-226 15-207 (459)
100 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 58.5 4.2 31 158-188 3-33 (34)
101 KOG1125 TPR repeat-containing 98.6 1.6E-05 3.5E-10 78.4 21.7 252 138-396 296-564 (579)
102 KOG1128 Uncharacterized conser 98.6 7.4E-06 1.6E-10 82.9 19.2 213 131-366 402-614 (777)
103 KOG1128 Uncharacterized conser 98.5 5.9E-06 1.3E-10 83.5 18.5 211 167-400 403-613 (777)
104 PLN02789 farnesyltranstransfer 98.5 0.0002 4.4E-09 69.0 28.4 208 136-351 46-267 (320)
105 KOG1070 rRNA processing protei 98.5 6.6E-05 1.4E-09 81.4 26.6 205 92-302 1458-1667(1710)
106 KOG0985 Vesicle coat protein c 98.5 0.002 4.4E-08 68.0 36.2 254 28-325 987-1241(1666)
107 KOG0985 Vesicle coat protein c 98.5 0.0017 3.8E-08 68.5 35.6 250 134-434 1055-1304(1666)
108 COG5010 TadD Flp pilus assembl 98.5 3.3E-05 7.1E-10 69.0 19.4 124 94-220 102-225 (257)
109 KOG0548 Molecular co-chaperone 98.5 0.001 2.3E-08 65.5 31.1 346 71-446 12-393 (539)
110 KOG1914 mRNA cleavage and poly 98.5 0.0019 4.1E-08 63.7 39.7 405 27-437 18-500 (656)
111 TIGR03302 OM_YfiO outer membra 98.5 2.4E-05 5.2E-10 73.0 19.6 185 89-298 30-232 (235)
112 KOG3617 WD40 and TPR repeat-co 98.4 0.0033 7.2E-08 65.0 35.6 175 130-329 941-1170(1416)
113 KOG4340 Uncharacterized conser 98.4 0.00011 2.4E-09 66.5 21.7 315 95-434 13-335 (459)
114 KOG3617 WD40 and TPR repeat-co 98.4 0.00045 9.8E-09 71.1 28.5 231 70-330 737-993 (1416)
115 PRK10370 formate-dependent nit 98.4 5.3E-05 1.2E-09 67.8 20.2 116 318-437 53-172 (198)
116 KOG3616 Selective LIM binding 98.4 0.00076 1.6E-08 68.6 29.5 169 241-436 739-909 (1636)
117 TIGR03302 OM_YfiO outer membra 98.4 6.8E-05 1.5E-09 69.9 21.5 64 126-191 32-99 (235)
118 PRK10370 formate-dependent nit 98.4 7.5E-05 1.6E-09 66.9 20.7 115 250-367 55-172 (198)
119 COG4783 Putative Zn-dependent 98.4 0.00096 2.1E-08 65.1 28.9 219 212-454 252-472 (484)
120 COG5010 TadD Flp pilus assembl 98.4 9.7E-05 2.1E-09 66.1 20.5 158 201-364 70-227 (257)
121 KOG3616 Selective LIM binding 98.4 0.00032 7E-09 71.1 26.3 193 134-362 739-931 (1636)
122 PRK15359 type III secretion sy 98.3 3.6E-05 7.7E-10 65.1 15.4 95 95-191 27-121 (144)
123 KOG3081 Vesicle coat complex C 98.3 0.00039 8.4E-09 62.3 21.5 150 170-332 116-270 (299)
124 PRK15179 Vi polysaccharide bio 98.3 0.00043 9.3E-09 73.8 26.2 163 230-402 82-244 (694)
125 PRK15359 type III secretion sy 98.3 5.4E-05 1.2E-09 64.0 15.7 87 313-401 33-119 (144)
126 PRK14720 transcript cleavage f 98.3 0.00063 1.4E-08 73.3 26.8 233 13-280 18-268 (906)
127 COG4783 Putative Zn-dependent 98.3 0.0017 3.6E-08 63.5 26.6 241 25-298 202-454 (484)
128 PRK15179 Vi polysaccharide bio 98.3 0.00027 6E-09 75.2 23.6 236 126-387 27-268 (694)
129 PRK14720 transcript cleavage f 98.3 0.00059 1.3E-08 73.5 25.9 239 89-385 28-268 (906)
130 KOG1914 mRNA cleavage and poly 98.2 0.0078 1.7E-07 59.6 38.0 392 51-453 12-481 (656)
131 KOG3081 Vesicle coat complex C 98.2 0.0016 3.4E-08 58.5 23.0 247 172-437 18-270 (299)
132 TIGR02552 LcrH_SycD type III s 98.2 0.0001 2.2E-09 61.9 14.9 91 345-437 23-113 (135)
133 KOG1127 TPR repeat-containing 98.2 0.018 3.9E-07 61.3 35.1 184 142-332 473-658 (1238)
134 TIGR02552 LcrH_SycD type III s 98.1 0.00012 2.6E-09 61.5 14.9 122 290-416 4-125 (135)
135 KOG2053 Mitochondrial inherita 98.1 0.017 3.8E-07 60.7 42.5 224 35-264 19-256 (932)
136 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 50.8 4.2 33 376-408 2-34 (35)
137 KOG2053 Mitochondrial inherita 98.1 0.023 4.9E-07 59.9 32.7 223 73-301 21-258 (932)
138 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.5E-10 49.1 4.3 33 164-196 2-34 (35)
139 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.3E-10 49.0 3.8 32 376-407 3-34 (34)
140 KOG3060 Uncharacterized conser 98.0 0.0083 1.8E-07 53.6 22.9 126 203-333 58-183 (289)
141 KOG2041 WD40 repeat protein [G 97.9 0.0066 1.4E-07 61.7 24.0 373 77-492 679-1107(1189)
142 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 47.7 4.0 32 164-195 3-34 (34)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00056 1.2E-08 67.3 15.7 120 274-400 174-294 (395)
144 KOG3060 Uncharacterized conser 97.8 0.02 4.3E-07 51.3 23.6 187 106-298 26-220 (289)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00081 1.8E-08 66.2 16.4 127 235-367 170-296 (395)
146 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.6E-08 56.0 15.5 116 317-435 24-144 (145)
147 PF10037 MRP-S27: Mitochondria 97.8 0.00038 8.2E-09 68.8 13.3 119 303-421 65-185 (429)
148 PF09976 TPR_21: Tetratricopep 97.8 0.0013 2.9E-08 55.8 14.5 21 343-363 122-142 (145)
149 PF10037 MRP-S27: Mitochondria 97.7 0.00066 1.4E-08 67.2 13.9 125 193-317 62-186 (429)
150 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8E-10 45.3 3.0 29 376-404 2-30 (31)
151 PF08579 RPM2: Mitochondrial r 97.7 0.00063 1.4E-08 52.5 10.1 77 97-173 30-115 (120)
152 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0023 5E-08 52.0 13.9 18 205-222 47-64 (119)
153 PF01535 PPR: PPR repeat; Int 97.6 7.1E-05 1.5E-09 44.1 3.4 29 164-192 2-30 (31)
154 cd00189 TPR Tetratricopeptide 97.6 0.0016 3.5E-08 50.0 11.7 90 98-189 6-95 (100)
155 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.5E-08 51.1 9.8 80 130-209 28-116 (120)
156 cd00189 TPR Tetratricopeptide 97.6 0.0014 3E-08 50.5 11.1 94 342-437 3-96 (100)
157 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0037 8E-08 50.8 13.7 95 96-191 6-105 (119)
158 PLN03088 SGT1, suppressor of 97.5 0.0044 9.6E-08 61.3 15.5 102 348-454 11-113 (356)
159 KOG2796 Uncharacterized conser 97.4 0.044 9.4E-07 49.4 19.3 132 166-298 181-315 (366)
160 PLN03088 SGT1, suppressor of 97.4 0.004 8.7E-08 61.6 14.8 100 313-416 11-110 (356)
161 KOG2796 Uncharacterized conser 97.4 0.088 1.9E-06 47.5 21.0 144 270-416 178-326 (366)
162 PRK15363 pathogenicity island 97.4 0.0066 1.4E-07 50.8 12.9 95 271-367 37-131 (157)
163 PF06239 ECSIT: Evolutionarily 97.4 0.0028 6E-08 55.6 10.9 101 337-456 45-150 (228)
164 PF05843 Suf: Suppressor of fo 97.3 0.005 1.1E-07 58.6 13.9 130 305-437 2-135 (280)
165 PF06239 ECSIT: Evolutionarily 97.3 0.0017 3.7E-08 56.9 9.5 105 89-212 44-153 (228)
166 PRK15363 pathogenicity island 97.3 0.007 1.5E-07 50.6 12.8 95 95-191 38-132 (157)
167 PRK10153 DNA-binding transcrip 97.3 0.017 3.8E-07 59.7 18.1 142 301-447 334-489 (517)
168 PF05843 Suf: Suppressor of fo 97.3 0.0063 1.4E-07 58.0 13.7 131 199-333 3-136 (280)
169 PRK10153 DNA-binding transcrip 97.3 0.018 3.9E-07 59.7 17.8 145 264-413 332-490 (517)
170 PF12895 Apc3: Anaphase-promot 97.2 0.00061 1.3E-08 51.5 5.2 80 352-434 2-83 (84)
171 PRK02603 photosystem I assembl 97.2 0.018 3.9E-07 50.5 15.3 84 271-355 37-122 (172)
172 PF12895 Apc3: Anaphase-promot 97.2 0.00085 1.8E-08 50.7 5.6 81 317-399 2-83 (84)
173 KOG0553 TPR repeat-containing 97.2 0.005 1.1E-07 56.6 11.3 100 349-453 91-191 (304)
174 KOG0553 TPR repeat-containing 97.2 0.0039 8.5E-08 57.2 10.4 96 33-132 89-187 (304)
175 PF14559 TPR_19: Tetratricopep 97.2 0.0014 2.9E-08 47.2 6.1 62 35-98 1-64 (68)
176 KOG0550 Molecular chaperone (D 97.2 0.12 2.6E-06 49.8 20.2 176 232-438 166-350 (486)
177 CHL00033 ycf3 photosystem I as 97.1 0.015 3.3E-07 50.8 13.8 80 270-350 36-117 (168)
178 PRK10866 outer membrane biogen 97.1 0.11 2.3E-06 48.3 19.7 55 345-399 181-237 (243)
179 PRK10866 outer membrane biogen 97.1 0.15 3.2E-06 47.4 20.4 177 240-436 38-239 (243)
180 PF14938 SNAP: Soluble NSF att 97.1 0.061 1.3E-06 51.5 18.2 133 341-476 116-265 (282)
181 PRK02603 photosystem I assembl 97.1 0.028 6.1E-07 49.3 14.7 63 163-225 36-100 (172)
182 CHL00033 ycf3 photosystem I as 97.0 0.012 2.5E-07 51.4 12.1 64 200-263 38-101 (168)
183 PF12688 TPR_5: Tetratrico pep 97.0 0.042 9.2E-07 44.3 13.6 55 278-332 10-66 (120)
184 PF14938 SNAP: Soluble NSF att 97.0 0.17 3.8E-06 48.3 20.4 26 272-297 158-183 (282)
185 PF14559 TPR_19: Tetratricopep 97.0 0.0034 7.5E-08 45.0 6.7 51 105-156 4-54 (68)
186 COG4235 Cytochrome c biogenesi 96.9 0.051 1.1E-06 50.4 15.1 99 336-437 153-255 (287)
187 PF13432 TPR_16: Tetratricopep 96.8 0.0055 1.2E-07 43.5 6.8 55 347-402 5-59 (65)
188 PF12688 TPR_5: Tetratrico pep 96.8 0.063 1.4E-06 43.3 13.5 54 171-224 10-65 (120)
189 COG4235 Cytochrome c biogenesi 96.8 0.075 1.6E-06 49.3 15.3 101 266-368 153-256 (287)
190 PF13432 TPR_16: Tetratricopep 96.7 0.0084 1.8E-07 42.5 6.7 54 101-155 6-59 (65)
191 PF13414 TPR_11: TPR repeat; P 96.7 0.008 1.7E-07 43.2 6.7 62 374-437 3-66 (69)
192 COG4700 Uncharacterized protei 96.6 0.39 8.4E-06 41.2 18.9 127 159-289 86-213 (251)
193 PF04840 Vps16_C: Vps16, C-ter 96.6 0.78 1.7E-05 44.4 28.5 108 271-398 179-286 (319)
194 PF04840 Vps16_C: Vps16, C-ter 96.5 0.84 1.8E-05 44.2 29.1 107 306-432 179-285 (319)
195 PF13525 YfiO: Outer membrane 96.5 0.4 8.7E-06 43.2 18.2 22 346-367 148-169 (203)
196 COG3898 Uncharacterized membra 96.5 0.84 1.8E-05 43.9 31.3 278 75-368 98-392 (531)
197 PF13414 TPR_11: TPR repeat; P 96.5 0.015 3.2E-07 41.8 7.1 61 93-154 4-65 (69)
198 PF13525 YfiO: Outer membrane 96.5 0.47 1E-05 42.8 18.2 168 241-429 12-198 (203)
199 PRK10803 tol-pal system protei 96.4 0.057 1.2E-06 50.5 12.2 50 173-224 154-207 (263)
200 KOG0550 Molecular chaperone (D 96.4 1.1 2.3E-05 43.6 23.8 257 33-297 57-349 (486)
201 PRK10803 tol-pal system protei 96.4 0.066 1.4E-06 50.1 12.4 97 128-226 144-246 (263)
202 KOG1130 Predicted G-alpha GTPa 96.3 0.086 1.9E-06 50.6 12.8 264 102-366 27-342 (639)
203 PRK15331 chaperone protein Sic 96.2 0.086 1.9E-06 44.5 11.0 84 35-120 47-133 (165)
204 COG4649 Uncharacterized protei 96.2 0.31 6.8E-06 41.2 13.8 123 34-156 67-196 (221)
205 PF13371 TPR_9: Tetratricopept 96.1 0.033 7.1E-07 40.5 7.4 53 349-402 5-57 (73)
206 COG4700 Uncharacterized protei 96.1 0.76 1.7E-05 39.4 18.8 101 267-367 87-188 (251)
207 KOG1130 Predicted G-alpha GTPa 96.1 0.13 2.8E-06 49.5 12.7 265 135-401 25-342 (639)
208 PF04053 Coatomer_WDAD: Coatom 96.1 0.42 9.1E-06 48.5 17.2 169 24-223 260-428 (443)
209 PF03704 BTAD: Bacterial trans 96.0 0.051 1.1E-06 46.1 9.0 69 95-164 65-138 (146)
210 PF12921 ATP13: Mitochondrial 96.0 0.2 4.4E-06 40.8 11.9 55 192-247 47-101 (126)
211 PF03704 BTAD: Bacterial trans 96.0 0.049 1.1E-06 46.2 8.8 71 129-200 64-139 (146)
212 PF13371 TPR_9: Tetratricopept 96.0 0.054 1.2E-06 39.3 7.9 55 101-156 4-58 (73)
213 KOG1538 Uncharacterized conser 95.9 0.89 1.9E-05 46.6 18.0 214 125-367 554-801 (1081)
214 KOG1538 Uncharacterized conser 95.9 1.1 2.4E-05 45.9 18.5 23 240-262 779-801 (1081)
215 PF12921 ATP13: Mitochondrial 95.8 0.21 4.5E-06 40.7 11.1 81 197-277 2-96 (126)
216 PRK15331 chaperone protein Sic 95.7 1 2.2E-05 38.2 15.1 90 276-367 44-133 (165)
217 KOG2041 WD40 repeat protein [G 95.7 3.2 6.9E-05 43.2 30.4 360 35-436 673-1084(1189)
218 KOG3941 Intermediate in Toll s 95.7 0.089 1.9E-06 48.0 9.4 123 82-223 55-185 (406)
219 PF13281 DUF4071: Domain of un 95.3 3.2 6.9E-05 40.8 19.8 32 407-438 303-334 (374)
220 COG3118 Thioredoxin domain-con 95.3 2.5 5.4E-05 39.5 17.4 142 138-284 145-287 (304)
221 KOG2280 Vacuolar assembly/sort 95.3 4.7 0.0001 42.5 26.0 27 91-117 506-532 (829)
222 KOG2114 Vacuolar assembly/sort 95.3 5.1 0.00011 42.8 21.5 174 33-223 342-516 (933)
223 PF13424 TPR_12: Tetratricopep 95.1 0.076 1.6E-06 39.2 6.1 63 375-437 6-74 (78)
224 PF13424 TPR_12: Tetratricopep 95.1 0.071 1.5E-06 39.3 5.9 62 340-401 6-73 (78)
225 COG3118 Thioredoxin domain-con 95.1 1.1 2.5E-05 41.6 14.4 139 34-176 143-286 (304)
226 COG3898 Uncharacterized membra 95.0 3.8 8.2E-05 39.7 30.6 149 285-443 245-397 (531)
227 KOG1258 mRNA processing protei 95.0 5.1 0.00011 41.2 37.2 404 24-454 40-485 (577)
228 PF13281 DUF4071: Domain of un 94.9 4.3 9.2E-05 39.9 19.6 73 101-173 150-228 (374)
229 KOG3941 Intermediate in Toll s 94.9 0.23 4.9E-06 45.4 9.3 36 390-425 139-174 (406)
230 PF04053 Coatomer_WDAD: Coatom 94.8 1.1 2.4E-05 45.5 15.1 155 102-294 271-427 (443)
231 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.41 9E-06 47.5 11.6 63 338-402 74-140 (453)
232 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.17 3.8E-06 50.1 8.8 66 371-438 72-141 (453)
233 smart00299 CLH Clathrin heavy 94.5 2.5 5.4E-05 35.3 15.6 39 135-174 15-53 (140)
234 KOG0543 FKBP-type peptidyl-pro 94.5 0.68 1.5E-05 45.0 11.9 139 32-190 215-354 (397)
235 PRK11906 transcriptional regul 94.3 4.4 9.4E-05 40.6 17.3 116 250-367 274-400 (458)
236 PF10300 DUF3808: Protein of u 94.1 2.9 6.2E-05 43.2 16.6 177 147-332 177-375 (468)
237 KOG2610 Uncharacterized conser 94.0 1.5 3.2E-05 41.4 12.6 119 174-294 115-234 (491)
238 KOG0543 FKBP-type peptidyl-pro 93.9 1.2 2.7E-05 43.2 12.5 95 270-366 258-353 (397)
239 PF09205 DUF1955: Domain of un 93.9 2.9 6.2E-05 33.8 13.5 62 307-369 89-150 (161)
240 KOG4555 TPR repeat-containing 93.6 2.6 5.6E-05 34.0 11.5 91 348-439 52-145 (175)
241 PF07079 DUF1347: Protein of u 93.6 8.5 0.00019 38.2 40.9 420 37-467 18-520 (549)
242 COG5107 RNA14 Pre-mRNA 3'-end 93.5 8.5 0.00018 38.2 33.2 146 304-455 397-546 (660)
243 PF04184 ST7: ST7 protein; In 93.5 6.3 0.00014 39.7 16.6 77 339-416 259-338 (539)
244 COG1729 Uncharacterized protei 93.4 1.4 2.9E-05 40.7 11.3 90 174-263 153-244 (262)
245 PF10300 DUF3808: Protein of u 93.4 5.9 0.00013 40.9 17.4 17 35-51 6-22 (468)
246 smart00299 CLH Clathrin heavy 93.4 4.1 9E-05 34.0 15.7 42 240-282 13-54 (140)
247 COG1729 Uncharacterized protei 93.4 1.3 2.9E-05 40.7 11.2 99 199-298 144-244 (262)
248 PRK11906 transcriptional regul 93.3 5.4 0.00012 40.0 16.1 143 75-222 272-432 (458)
249 PF09205 DUF1955: Domain of un 93.2 3.8 8.2E-05 33.2 13.2 137 175-335 15-151 (161)
250 KOG2610 Uncharacterized conser 93.2 2.7 5.8E-05 39.8 12.9 151 139-294 115-272 (491)
251 KOG1941 Acetylcholine receptor 93.0 6.3 0.00014 37.8 15.1 166 200-366 86-273 (518)
252 PF13512 TPR_18: Tetratricopep 93.0 2.6 5.7E-05 34.9 11.3 52 316-367 22-75 (142)
253 PF13170 DUF4003: Protein of u 92.9 9.1 0.0002 36.7 18.0 131 285-417 78-225 (297)
254 KOG4555 TPR repeat-containing 92.8 4.3 9.4E-05 32.7 11.8 91 101-192 52-145 (175)
255 COG5107 RNA14 Pre-mRNA 3'-end 92.8 11 0.00024 37.4 36.9 386 58-452 39-510 (660)
256 KOG1585 Protein required for f 92.7 7.6 0.00016 35.2 17.0 24 237-260 94-117 (308)
257 COG3629 DnrI DNA-binding trans 92.6 1.5 3.3E-05 41.0 10.8 77 129-206 155-236 (280)
258 PF13428 TPR_14: Tetratricopep 92.5 0.55 1.2E-05 29.9 5.6 26 238-263 5-30 (44)
259 PF08631 SPO22: Meiosis protei 92.3 11 0.00023 36.0 24.7 62 199-263 86-150 (278)
260 PF13428 TPR_14: Tetratricopep 92.2 0.56 1.2E-05 29.9 5.3 24 344-367 6-29 (44)
261 COG3629 DnrI DNA-binding trans 92.0 1.9 4.2E-05 40.4 10.6 60 341-401 155-214 (280)
262 PF13512 TPR_18: Tetratricopep 92.0 5.2 0.00011 33.2 11.8 24 240-263 53-76 (142)
263 KOG1920 IkappaB kinase complex 91.8 26 0.00057 39.4 23.0 111 272-402 911-1027(1265)
264 PF13170 DUF4003: Protein of u 91.7 13 0.00028 35.7 17.2 131 178-310 78-223 (297)
265 PF09613 HrpB1_HrpK: Bacterial 91.7 5.6 0.00012 33.7 12.0 50 37-88 22-71 (160)
266 COG0457 NrfG FOG: TPR repeat [ 91.7 9.8 0.00021 34.3 29.9 199 235-437 60-264 (291)
267 COG4105 ComL DNA uptake lipopr 91.5 11 0.00024 34.6 21.1 53 345-398 173-228 (254)
268 KOG1920 IkappaB kinase complex 91.5 24 0.00051 39.7 19.2 154 141-329 894-1051(1265)
269 PF04184 ST7: ST7 protein; In 91.4 18 0.00038 36.7 17.2 74 308-381 263-338 (539)
270 KOG0276 Vesicle coat complex C 91.2 3.1 6.7E-05 42.6 11.6 158 28-222 589-746 (794)
271 COG4649 Uncharacterized protei 90.9 9.4 0.0002 32.7 14.9 134 91-225 58-195 (221)
272 PRK09687 putative lyase; Provi 90.9 15 0.00033 35.0 30.1 235 88-349 33-277 (280)
273 COG4785 NlpI Lipoprotein NlpI, 90.5 12 0.00026 33.3 17.3 178 248-438 79-266 (297)
274 KOG2280 Vacuolar assembly/sort 90.4 27 0.00059 37.2 31.7 318 102-436 399-771 (829)
275 KOG1941 Acetylcholine receptor 90.4 18 0.00038 35.0 18.4 168 270-437 84-274 (518)
276 PF09613 HrpB1_HrpK: Bacterial 89.8 11 0.00025 31.9 12.7 52 103-156 21-73 (160)
277 COG4785 NlpI Lipoprotein NlpI, 89.7 14 0.00031 32.8 14.1 66 90-156 97-162 (297)
278 PF10602 RPN7: 26S proteasome 89.2 8.7 0.00019 33.6 11.8 96 129-224 38-140 (177)
279 PF07079 DUF1347: Protein of u 89.2 26 0.00055 35.1 42.6 383 71-464 16-484 (549)
280 COG0457 NrfG FOG: TPR repeat [ 89.2 16 0.00035 32.8 29.6 202 198-403 60-265 (291)
281 PF07035 Mic1: Colon cancer-as 88.8 14 0.00031 31.7 14.8 134 182-332 14-148 (167)
282 KOG1585 Protein required for f 88.7 19 0.0004 32.9 17.9 219 9-257 18-250 (308)
283 PF07035 Mic1: Colon cancer-as 88.3 16 0.00034 31.5 15.4 135 113-263 15-149 (167)
284 KOG4570 Uncharacterized conser 88.2 7.7 0.00017 36.5 10.9 103 299-403 59-164 (418)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 88.1 6.1 0.00013 30.0 8.3 64 389-454 22-86 (103)
286 PF13176 TPR_7: Tetratricopept 88.1 1.1 2.4E-05 27.0 3.9 23 377-399 2-24 (36)
287 PF10602 RPN7: 26S proteasome 87.6 6.4 0.00014 34.4 9.9 15 281-295 125-139 (177)
288 PF02284 COX5A: Cytochrome c o 87.4 7.3 0.00016 29.9 8.4 62 392-455 28-90 (108)
289 PF13176 TPR_7: Tetratricopept 86.8 1.6 3.4E-05 26.3 4.0 23 165-187 2-24 (36)
290 TIGR02561 HrpB1_HrpK type III 86.8 16 0.00034 30.6 10.8 51 37-89 22-72 (153)
291 PF13431 TPR_17: Tetratricopep 86.3 1.2 2.6E-05 26.5 3.2 30 259-289 4-33 (34)
292 PF00515 TPR_1: Tetratricopept 86.2 1.7 3.6E-05 25.6 4.0 25 377-401 4-28 (34)
293 PF00515 TPR_1: Tetratricopept 86.1 2 4.3E-05 25.2 4.2 32 410-443 2-33 (34)
294 COG2976 Uncharacterized protei 85.8 15 0.00032 32.3 10.6 118 37-157 65-189 (207)
295 KOG1586 Protein required for f 85.6 27 0.00058 31.7 12.3 25 350-374 165-189 (288)
296 TIGR02561 HrpB1_HrpK type III 85.4 20 0.00044 29.9 11.1 52 103-156 21-73 (153)
297 COG4105 ComL DNA uptake lipopr 85.3 31 0.00067 31.8 21.5 54 173-226 45-100 (254)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 8.6 0.00019 29.2 7.3 45 287-331 25-69 (103)
299 PF13431 TPR_17: Tetratricopep 84.0 1.6 3.4E-05 26.0 3.0 20 127-146 13-32 (34)
300 PF08631 SPO22: Meiosis protei 83.7 41 0.00089 32.0 28.0 161 103-268 4-191 (278)
301 PF06552 TOM20_plant: Plant sp 82.8 19 0.00041 31.2 10.0 60 391-454 52-123 (186)
302 KOG4570 Uncharacterized conser 82.3 20 0.00044 33.9 10.6 103 192-298 59-164 (418)
303 KOG0276 Vesicle coat complex C 82.1 37 0.00081 35.3 13.2 131 129-294 616-746 (794)
304 PF07719 TPR_2: Tetratricopept 82.0 3.8 8.1E-05 23.9 4.2 26 377-402 4-29 (34)
305 KOG2114 Vacuolar assembly/sort 81.7 85 0.0018 34.2 20.7 139 33-189 376-517 (933)
306 PRK09687 putative lyase; Provi 81.6 50 0.0011 31.5 30.7 137 268-420 141-278 (280)
307 PF07719 TPR_2: Tetratricopept 81.6 3.4 7.4E-05 24.1 4.0 26 412-437 4-29 (34)
308 KOG2066 Vacuolar assembly/sort 81.2 85 0.0018 33.9 27.3 151 31-189 362-532 (846)
309 PF13929 mRNA_stabil: mRNA sta 80.9 51 0.0011 31.1 15.6 116 284-399 143-263 (292)
310 PF02284 COX5A: Cytochrome c o 80.4 10 0.00023 29.1 6.7 47 287-333 28-74 (108)
311 PF11207 DUF2989: Protein of u 80.4 21 0.00045 31.7 9.6 73 180-253 124-197 (203)
312 PF07575 Nucleopor_Nup85: Nup8 79.7 91 0.002 33.3 18.8 163 271-453 374-539 (566)
313 PF13374 TPR_10: Tetratricopep 79.1 4.7 0.0001 24.8 4.2 25 376-400 4-28 (42)
314 TIGR02508 type_III_yscG type I 78.5 28 0.00061 26.8 9.8 79 40-122 20-98 (115)
315 KOG1550 Extracellular protein 78.1 1E+02 0.0022 32.9 26.7 181 108-300 228-428 (552)
316 COG3947 Response regulator con 78.0 62 0.0014 30.5 15.6 58 272-330 282-339 (361)
317 KOG4648 Uncharacterized conser 77.6 14 0.00029 35.4 8.1 82 74-156 110-194 (536)
318 PF06552 TOM20_plant: Plant sp 77.2 40 0.00087 29.3 10.2 78 356-443 52-141 (186)
319 COG3947 Response regulator con 76.9 67 0.0015 30.3 14.8 71 376-447 281-356 (361)
320 PF00637 Clathrin: Region in C 76.7 0.91 2E-05 38.1 0.4 84 345-435 13-96 (143)
321 PF13374 TPR_10: Tetratricopep 76.4 6.3 0.00014 24.2 4.2 29 339-367 2-30 (42)
322 KOG1550 Extracellular protein 75.7 1.2E+02 0.0025 32.4 26.7 179 143-335 228-428 (552)
323 TIGR02508 type_III_yscG type I 75.4 35 0.00076 26.3 8.6 51 136-192 48-98 (115)
324 PF04097 Nic96: Nup93/Nic96; 75.2 41 0.00088 36.3 12.2 38 552-592 522-559 (613)
325 COG4455 ImpE Protein of avirul 73.9 25 0.00055 31.5 8.3 21 239-259 40-60 (273)
326 PRK15180 Vi polysaccharide bio 73.8 35 0.00075 34.3 10.1 147 194-345 286-432 (831)
327 COG4455 ImpE Protein of avirul 72.8 27 0.00059 31.3 8.2 58 96-154 5-62 (273)
328 PF13181 TPR_8: Tetratricopept 71.4 7.7 0.00017 22.6 3.5 26 412-437 4-29 (34)
329 PF00637 Clathrin: Region in C 71.4 1.8 4E-05 36.3 0.9 53 99-151 14-66 (143)
330 PF13181 TPR_8: Tetratricopept 71.3 6.7 0.00015 22.8 3.2 27 376-402 3-29 (34)
331 COG2976 Uncharacterized protei 71.0 74 0.0016 28.1 14.2 90 345-439 95-189 (207)
332 TIGR03504 FimV_Cterm FimV C-te 68.9 11 0.00025 23.9 3.9 24 415-438 5-28 (44)
333 KOG2471 TPR repeat-containing 68.3 1.2E+02 0.0025 31.0 12.3 41 104-144 29-69 (696)
334 PRK11619 lytic murein transgly 68.2 1.8E+02 0.004 31.6 39.0 51 381-434 414-464 (644)
335 PF07721 TPR_4: Tetratricopept 68.0 8.7 0.00019 21.0 2.9 18 345-362 7-24 (26)
336 KOG4077 Cytochrome c oxidase, 67.9 55 0.0012 26.4 8.1 61 392-453 67-127 (149)
337 KOG4234 TPR repeat-containing 67.1 65 0.0014 28.6 9.2 92 207-299 105-198 (271)
338 PF10345 Cohesin_load: Cohesin 67.1 1.9E+02 0.0041 31.3 36.8 180 43-223 39-251 (608)
339 KOG4648 Uncharacterized conser 66.9 17 0.00037 34.7 6.2 53 313-366 106-158 (536)
340 PF14853 Fis1_TPR_C: Fis1 C-te 66.4 31 0.00067 23.0 5.7 37 415-453 7-43 (53)
341 PF13174 TPR_6: Tetratricopept 66.4 9.8 0.00021 21.8 3.2 18 172-189 10-27 (33)
342 PF07163 Pex26: Pex26 protein; 66.3 71 0.0015 29.9 9.8 88 133-220 89-181 (309)
343 PF13174 TPR_6: Tetratricopept 65.8 12 0.00026 21.3 3.5 24 133-156 6-29 (33)
344 PF13762 MNE1: Mitochondrial s 64.3 85 0.0019 26.3 10.8 80 377-456 42-127 (145)
345 PF09477 Type_III_YscG: Bacter 64.1 68 0.0015 25.1 8.6 80 106-192 20-99 (116)
346 PF08311 Mad3_BUB1_I: Mad3/BUB 63.2 39 0.00084 27.6 7.1 43 43-85 81-123 (126)
347 KOG1258 mRNA processing protei 62.6 2.1E+02 0.0045 30.1 29.9 88 32-121 82-180 (577)
348 PF13762 MNE1: Mitochondrial s 62.5 93 0.002 26.1 10.4 85 341-425 41-131 (145)
349 COG5159 RPN6 26S proteasome re 62.4 1.4E+02 0.003 28.1 11.2 34 378-411 129-166 (421)
350 cd08819 CARD_MDA5_2 Caspase ac 62.0 65 0.0014 24.1 7.2 14 283-296 50-63 (88)
351 PF07163 Pex26: Pex26 protein; 61.1 1.1E+02 0.0023 28.8 10.0 87 311-397 90-181 (309)
352 PF08424 NRDE-2: NRDE-2, neces 60.9 1.7E+02 0.0037 28.6 17.1 77 144-222 48-127 (321)
353 KOG1464 COP9 signalosome, subu 60.8 1.4E+02 0.0031 27.7 17.5 23 240-262 151-173 (440)
354 PF02259 FAT: FAT domain; Int 60.7 1.7E+02 0.0038 28.6 23.2 15 388-402 272-286 (352)
355 PF09477 Type_III_YscG: Bacter 60.7 80 0.0017 24.7 8.3 81 38-122 19-99 (116)
356 TIGR03504 FimV_Cterm FimV C-te 60.3 21 0.00046 22.7 3.9 19 171-189 8-26 (44)
357 PF11207 DUF2989: Protein of u 59.8 1.3E+02 0.0028 26.8 15.1 72 144-216 123-197 (203)
358 KOG2471 TPR repeat-containing 59.2 1.2E+02 0.0026 30.9 10.6 106 314-421 250-381 (696)
359 KOG4234 TPR repeat-containing 58.5 1.4E+02 0.0029 26.7 9.9 54 245-298 106-163 (271)
360 COG1747 Uncharacterized N-term 57.2 2.4E+02 0.0052 29.1 25.1 179 91-278 65-248 (711)
361 PHA02875 ankyrin repeat protei 57.1 2.2E+02 0.0049 28.8 13.7 7 396-402 302-308 (413)
362 TIGR03362 VI_chp_7 type VI sec 56.0 2E+02 0.0042 27.8 11.5 46 28-75 102-147 (301)
363 PF04190 DUF410: Protein of un 55.5 1.8E+02 0.004 27.3 16.1 26 126-151 89-114 (260)
364 KOG1586 Protein required for f 55.4 1.7E+02 0.0037 26.8 17.2 90 385-476 165-264 (288)
365 COG2909 MalT ATP-dependent tra 54.7 3.4E+02 0.0074 30.2 26.6 88 137-224 425-524 (894)
366 KOG4077 Cytochrome c oxidase, 54.3 93 0.002 25.2 7.3 47 287-333 67-113 (149)
367 KOG1464 COP9 signalosome, subu 54.3 1.9E+02 0.0041 27.0 18.1 121 247-367 40-173 (440)
368 PF14561 TPR_20: Tetratricopep 54.0 68 0.0015 24.3 6.5 36 20-55 17-52 (90)
369 PF08424 NRDE-2: NRDE-2, neces 53.9 2.2E+02 0.0048 27.8 18.5 22 419-440 164-185 (321)
370 PF11848 DUF3368: Domain of un 53.0 50 0.0011 21.5 4.9 32 420-451 13-44 (48)
371 PF10366 Vps39_1: Vacuolar sor 52.4 75 0.0016 25.1 6.8 27 376-402 41-67 (108)
372 KOG2063 Vacuolar assembly/sort 52.3 3.9E+02 0.0084 30.1 17.6 110 130-247 507-639 (877)
373 PF02259 FAT: FAT domain; Int 50.2 2.6E+02 0.0056 27.4 26.5 66 337-402 144-212 (352)
374 PF10366 Vps39_1: Vacuolar sor 50.0 1.2E+02 0.0026 23.9 7.6 27 271-297 41-67 (108)
375 PF10255 Paf67: RNA polymerase 49.6 2.3E+02 0.005 28.6 11.1 61 130-190 125-192 (404)
376 PF02847 MA3: MA3 domain; Int 49.4 1.3E+02 0.0028 23.7 8.6 67 378-446 6-74 (113)
377 KOG2297 Predicted translation 49.2 2.5E+02 0.0053 26.9 15.8 18 306-323 323-340 (412)
378 smart00028 TPR Tetratricopepti 48.4 40 0.00086 18.1 3.8 24 377-400 4-27 (34)
379 KOG3807 Predicted membrane pro 48.1 2.6E+02 0.0057 26.9 11.9 55 167-223 280-337 (556)
380 cd08819 CARD_MDA5_2 Caspase ac 47.9 99 0.0021 23.2 6.2 32 75-107 50-81 (88)
381 PF14689 SPOB_a: Sensor_kinase 47.3 40 0.00087 23.4 4.0 24 378-401 27-50 (62)
382 PF10579 Rapsyn_N: Rapsyn N-te 47.2 56 0.0012 23.9 4.7 16 379-394 48-63 (80)
383 PF11663 Toxin_YhaV: Toxin wit 46.9 17 0.00037 29.6 2.4 30 352-383 108-137 (140)
384 PF13929 mRNA_stabil: mRNA sta 46.7 2.6E+02 0.0057 26.5 21.9 117 176-293 142-262 (292)
385 PF11663 Toxin_YhaV: Toxin wit 46.5 23 0.00049 28.9 3.0 30 140-171 108-137 (140)
386 PF11848 DUF3368: Domain of un 46.3 80 0.0017 20.5 5.2 23 141-163 16-38 (48)
387 COG1747 Uncharacterized N-term 45.9 3.6E+02 0.0079 27.9 25.7 166 160-334 64-235 (711)
388 KOG4507 Uncharacterized conser 45.9 78 0.0017 33.0 7.2 58 133-191 648-705 (886)
389 PF14689 SPOB_a: Sensor_kinase 45.4 62 0.0013 22.4 4.7 20 168-187 29-48 (62)
390 PF11846 DUF3366: Domain of un 44.6 1.2E+02 0.0026 26.9 7.8 33 405-437 140-172 (193)
391 KOG0403 Neoplastic transformat 44.4 3.6E+02 0.0077 27.4 17.0 78 307-389 512-589 (645)
392 PF09868 DUF2095: Uncharacteri 43.6 94 0.002 24.5 5.7 37 133-170 67-103 (128)
393 PF14853 Fis1_TPR_C: Fis1 C-te 43.2 83 0.0018 21.0 4.8 32 380-413 7-38 (53)
394 KOG4507 Uncharacterized conser 42.5 1.6E+02 0.0035 30.8 8.8 104 280-385 618-721 (886)
395 cd00280 TRFH Telomeric Repeat 42.0 1.7E+02 0.0037 25.7 7.6 65 355-422 85-156 (200)
396 PF07575 Nucleopor_Nup85: Nup8 41.9 2.3E+02 0.0051 30.3 10.7 33 316-348 507-539 (566)
397 COG1782 Predicted metal-depend 41.0 20 0.00044 36.2 2.3 52 548-604 419-471 (637)
398 PF04910 Tcf25: Transcriptiona 40.6 3.8E+02 0.0083 26.7 18.0 65 91-155 99-167 (360)
399 COG0735 Fur Fe2+/Zn2+ uptake r 40.3 1.7E+02 0.0037 24.6 7.5 57 259-316 11-67 (145)
400 COG5108 RPO41 Mitochondrial DN 40.0 2.3E+02 0.0049 30.3 9.4 93 202-297 33-131 (1117)
401 PHA02875 ankyrin repeat protei 39.9 4.1E+02 0.0089 26.8 16.1 38 138-179 10-49 (413)
402 PF10345 Cohesin_load: Cohesin 39.7 5.2E+02 0.011 28.0 36.8 158 31-189 65-252 (608)
403 smart00777 Mad3_BUB1_I Mad3/BU 38.8 1.1E+02 0.0023 25.0 5.8 25 92-116 99-123 (125)
404 PF12862 Apc5: Anaphase-promot 38.5 1.7E+02 0.0037 22.2 6.8 53 385-437 9-69 (94)
405 cd00280 TRFH Telomeric Repeat 38.5 2.2E+02 0.0048 25.0 7.8 23 345-367 117-139 (200)
406 COG0735 Fur Fe2+/Zn2+ uptake r 38.0 2.2E+02 0.0047 23.9 7.8 46 117-163 11-56 (145)
407 PF11846 DUF3366: Domain of un 37.7 1.6E+02 0.0035 26.0 7.6 30 372-401 142-171 (193)
408 COG2909 MalT ATP-dependent tra 37.6 6.3E+02 0.014 28.3 25.5 227 208-434 426-684 (894)
409 COG5108 RPO41 Mitochondrial DN 36.8 2.8E+02 0.0061 29.6 9.5 91 167-262 33-131 (1117)
410 PF09670 Cas_Cas02710: CRISPR- 36.0 4.6E+02 0.01 26.3 12.2 54 279-333 141-198 (379)
411 KOG4642 Chaperone-dependent E3 34.5 3.8E+02 0.0082 24.8 11.1 116 316-435 22-143 (284)
412 KOG4567 GTPase-activating prot 34.1 2.7E+02 0.0059 26.7 8.2 72 147-223 263-344 (370)
413 KOG2297 Predicted translation 33.7 4.4E+02 0.0095 25.3 19.4 71 279-359 265-341 (412)
414 PF09454 Vps23_core: Vps23 cor 33.5 79 0.0017 22.2 3.7 45 127-172 8-52 (65)
415 PRK10564 maltose regulon perip 33.5 79 0.0017 30.1 4.8 36 377-412 260-295 (303)
416 PF12862 Apc5: Anaphase-promot 33.4 1.8E+02 0.0039 22.1 6.2 54 102-155 8-69 (94)
417 COG4003 Uncharacterized protei 33.3 1.7E+02 0.0037 21.5 5.3 25 133-157 37-61 (98)
418 PF04097 Nic96: Nup93/Nic96; 32.7 6.7E+02 0.015 27.2 19.6 88 276-368 265-356 (613)
419 smart00386 HAT HAT (Half-A-TPR 32.2 94 0.002 17.2 4.1 26 39-66 1-26 (33)
420 PF13838 Clathrin_H_link: Clat 32.1 79 0.0017 22.3 3.5 33 21-53 2-34 (66)
421 KOG0890 Protein kinase of the 31.7 1.2E+03 0.026 29.7 24.3 151 98-258 1389-1542(2382)
422 PRK12356 glutaminase; Reviewed 31.7 1.6E+02 0.0035 28.5 6.6 75 387-464 167-253 (319)
423 PRK10564 maltose regulon perip 31.4 1.1E+02 0.0023 29.2 5.3 30 95-124 260-289 (303)
424 PF08311 Mad3_BUB1_I: Mad3/BUB 31.4 2.9E+02 0.0062 22.5 9.0 43 392-434 81-124 (126)
425 PHA02537 M terminase endonucle 31.2 4.2E+02 0.0091 24.3 9.1 36 20-57 80-115 (230)
426 KOG2908 26S proteasome regulat 31.1 5.1E+02 0.011 25.3 9.9 22 346-367 122-143 (380)
427 KOG1308 Hsp70-interacting prot 31.0 25 0.00054 33.8 1.2 86 75-162 128-217 (377)
428 KOG0890 Protein kinase of the 30.8 1.2E+03 0.027 29.6 25.7 62 304-368 1670-1731(2382)
429 KOG2034 Vacuolar sorting prote 30.4 8.1E+02 0.018 27.4 30.2 79 27-115 360-438 (911)
430 PRK13800 putative oxidoreducta 30.3 8.8E+02 0.019 27.8 30.0 248 124-402 632-880 (897)
431 PRK10941 hypothetical protein; 30.0 4.8E+02 0.01 24.7 11.0 59 239-298 186-244 (269)
432 KOG3677 RNA polymerase I-assoc 29.8 5.9E+02 0.013 25.6 14.0 62 128-189 236-299 (525)
433 PRK10941 hypothetical protein; 29.7 4.9E+02 0.011 24.6 10.8 57 168-225 187-243 (269)
434 KOG0686 COP9 signalosome, subu 29.4 6E+02 0.013 25.6 14.1 63 270-333 151-216 (466)
435 KOG3677 RNA polymerase I-assoc 29.2 6.1E+02 0.013 25.6 11.3 60 201-260 239-298 (525)
436 KOG4567 GTPase-activating prot 29.2 5.3E+02 0.011 24.9 9.2 43 290-332 264-306 (370)
437 PF09454 Vps23_core: Vps23 cor 29.0 1.2E+02 0.0025 21.4 3.9 51 89-140 5-55 (65)
438 PF15297 CKAP2_C: Cytoskeleton 28.8 5.7E+02 0.012 25.1 9.9 64 390-455 119-186 (353)
439 KOG0376 Serine-threonine phosp 28.8 1E+02 0.0023 31.2 5.0 102 32-137 11-115 (476)
440 COG5159 RPN6 26S proteasome re 28.5 5.2E+02 0.011 24.6 20.7 31 27-57 5-35 (421)
441 KOG0687 26S proteasome regulat 28.1 5.7E+02 0.012 24.9 15.3 96 340-437 105-209 (393)
442 KOG0545 Aryl-hydrocarbon recep 27.9 5E+02 0.011 24.1 9.5 90 31-120 184-292 (329)
443 PF05944 Phage_term_smal: Phag 27.7 2.7E+02 0.0058 23.0 6.4 36 20-57 45-80 (132)
444 PF09670 Cas_Cas02710: CRISPR- 27.6 6.4E+02 0.014 25.3 12.1 54 313-367 140-197 (379)
445 PRK12798 chemotaxis protein; R 27.5 6.6E+02 0.014 25.4 21.5 86 175-260 125-211 (421)
446 cd08332 CARD_CASP2 Caspase act 27.1 2.6E+02 0.0056 21.2 5.9 57 46-107 24-80 (90)
447 COG0790 FOG: TPR repeat, SEL1 26.2 5.7E+02 0.012 24.2 22.4 45 357-404 173-221 (292)
448 PRK11639 zinc uptake transcrip 25.4 3.9E+02 0.0084 23.1 7.5 35 283-317 39-73 (169)
449 PF15297 CKAP2_C: Cytoskeleton 25.0 5.8E+02 0.012 25.1 9.0 68 213-280 119-186 (353)
450 PRK11639 zinc uptake transcrip 24.4 4.3E+02 0.0094 22.8 7.7 59 119-178 18-76 (169)
451 PF11817 Foie-gras_1: Foie gra 24.4 3.7E+02 0.0079 25.0 7.7 59 202-260 183-244 (247)
452 KOG0686 COP9 signalosome, subu 24.3 7.4E+02 0.016 25.0 14.6 63 163-225 151-215 (466)
453 KOG2066 Vacuolar assembly/sort 24.3 9.9E+02 0.022 26.4 25.5 100 101-209 365-467 (846)
454 smart00638 LPD_N Lipoprotein N 24.2 9E+02 0.02 25.9 25.7 261 78-345 296-573 (574)
455 KOG1166 Mitotic checkpoint ser 24.0 2.9E+02 0.0063 31.5 7.8 68 20-88 74-141 (974)
456 KOG0991 Replication factor C, 23.9 5.8E+02 0.013 23.6 13.2 80 325-407 180-271 (333)
457 PF09868 DUF2095: Uncharacteri 23.6 3.2E+02 0.0068 21.7 5.6 24 311-334 68-91 (128)
458 PF02184 HAT: HAT (Half-A-TPR) 23.5 1.2E+02 0.0026 17.8 2.6 23 424-448 2-24 (32)
459 KOG0991 Replication factor C, 23.4 5.9E+02 0.013 23.5 13.3 98 348-448 168-277 (333)
460 PRK12798 chemotaxis protein; R 23.4 7.9E+02 0.017 24.9 20.8 153 139-297 124-285 (421)
461 KOG2396 HAT (Half-A-TPR) repea 23.2 8.6E+02 0.019 25.3 37.9 92 342-437 463-558 (568)
462 KOG0376 Serine-threonine phosp 23.2 2.5E+02 0.0055 28.7 6.5 103 313-421 13-117 (476)
463 smart00777 Mad3_BUB1_I Mad3/BU 23.1 4.2E+02 0.0091 21.6 7.7 42 392-433 81-123 (125)
464 COG2178 Predicted RNA-binding 22.8 5.5E+02 0.012 22.9 8.3 15 317-331 134-148 (204)
465 PF14561 TPR_20: Tetratricopep 22.8 3.4E+02 0.0074 20.5 8.8 33 266-298 19-51 (90)
466 PF11817 Foie-gras_1: Foie gra 22.7 4.4E+02 0.0096 24.4 8.0 21 240-260 184-204 (247)
467 PF11768 DUF3312: Protein of u 22.7 9.2E+02 0.02 25.4 11.3 22 202-223 413-434 (545)
468 KOG0403 Neoplastic transformat 22.3 8.5E+02 0.018 24.9 19.0 73 377-456 512-586 (645)
469 PF00244 14-3-3: 14-3-3 protei 22.3 6.2E+02 0.014 23.3 10.1 57 240-296 7-64 (236)
470 PF12926 MOZART2: Mitotic-spin 22.2 3.5E+02 0.0075 20.4 7.9 42 113-154 29-70 (88)
471 smart00804 TAP_C C-terminal do 22.0 1E+02 0.0022 21.5 2.6 29 544-572 34-62 (63)
472 PF11838 ERAP1_C: ERAP1-like C 22.0 7.2E+02 0.016 23.9 19.7 190 99-294 45-262 (324)
473 PF02847 MA3: MA3 domain; Int 21.3 3.7E+02 0.008 21.0 6.3 21 345-365 8-28 (113)
474 KOG0292 Vesicle coat complex C 21.1 4E+02 0.0086 29.7 7.7 108 24-154 592-699 (1202)
475 cd07153 Fur_like Ferric uptake 21.1 2.7E+02 0.0059 21.9 5.5 29 417-445 8-36 (116)
476 PRK09857 putative transposase; 21.1 7.4E+02 0.016 23.8 9.8 65 130-195 209-273 (292)
477 PRK08691 DNA polymerase III su 21.1 1.1E+03 0.024 25.9 11.2 46 286-333 181-227 (709)
478 PF11417 Inhibitor_G39P: Loade 20.8 2.6E+02 0.0056 20.1 4.5 37 23-59 27-63 (71)
479 COG2178 Predicted RNA-binding 20.7 6.1E+02 0.013 22.6 10.3 17 421-437 133-149 (204)
480 PF10475 DUF2450: Protein of u 20.4 7.6E+02 0.016 23.6 10.0 51 168-224 104-154 (291)
481 PRK13800 putative oxidoreducta 20.0 1.4E+03 0.029 26.4 32.6 261 159-453 632-893 (897)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-87 Score=723.12 Aligned_cols=580 Identities=76% Similarity=1.232 Sum_probs=562.0
Q ss_pred chhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 007384 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (605)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 103 (605)
+.+.++..|+.+++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|.++|+.|+.||..+|+.++.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (605)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (605)
+.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998755678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH
Q 007384 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (605)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (605)
++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007384 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (605)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 423 (605)
+||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHhhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCcHH
Q 007384 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503 (605)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 503 (605)
++++|.++|++|.+.|+.||..+|++||++|.++|++|+.+.+....|+.+.+.+.+.|+.+|+.+|++|++.|+.||..
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999988889999999999999999888888999999999999999999999999
Q ss_pred HHHHHhhccCCCCchhHHhhHHHHhCCChhhhhccccccccccccCchhHHHHHHHHHHhCCCCCcccccCCceeecccc
Q 007384 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARK 583 (605)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~~~~~~~~~~~~~ 583 (605)
|+..+++|+....+...+..|.+.+++.|...+|..+.++|+++|...++|+.+|++|.+.|++|+..+...+.++|.++
T Consensus 849 T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~ 928 (1060)
T PLN03218 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEE 928 (1060)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEccc
Confidence 99999999988888888999999999999988888888999999877779999999999999999998888899999999
Q ss_pred CcccchhHHHHHHHh-hhhhc
Q 007384 584 LEIHTAKPFSARRIS-FRRRI 603 (605)
Q Consensus 584 ~~~~~~~~~~~~~~~-~~~~~ 603 (605)
+++.+++.++.+|++ +++|+
T Consensus 929 ~~~~aa~~~l~~wl~~~~~~~ 949 (1060)
T PLN03218 929 LPVFAAEVYLLTILKGLKHRL 949 (1060)
T ss_pred CcchhHHHHHHHHHHHHHHHH
Confidence 999999999999999 66654
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-68 Score=588.10 Aligned_cols=520 Identities=19% Similarity=0.293 Sum_probs=451.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhhh
Q 007384 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQ 74 (605)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------------------~~~l~~~~~~~ 74 (605)
......+++.|++++|.++|++|.+.|+.|+...+ ...++..+.+.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 34455667999999999999999997764433222 13334455677
Q ss_pred HHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH------------------------
Q 007384 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY------------------------ 130 (605)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~------------------------ 130 (605)
|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|...|+.||..||
T Consensus 135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999998888887776
Q ss_pred -----------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007384 131 -----------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (605)
Q Consensus 131 -----------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (605)
+.|+.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|...|+.||..|
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 455666677777777777777776 56778888888888888888888888888888888888888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007384 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (605)
|+.++.+|++.|+.+.|.+++..|... |+.||..+|++|+.+|++.|++++|.++|+.|.. |+..+|+++|.+|
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 888888888888888888888888774 7888999999999999999999999999998864 5668999999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007384 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (605)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (605)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|++|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (605)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 439 (605)
++|++|. .+|..+||++|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++.|+++.+.+++..+.+.|
T Consensus 445 ~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999997 57899999999999999999999999999986 599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHhhhhhhhhccCCCccchhhhHHH------------HHHHHHHHHHcCCCCcHHHHHH
Q 007384 440 VIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSK 507 (605)
Q Consensus 440 ~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~m~~~g~~p~~~~~~~ 507 (605)
+.+|..++|+||++|++ +|++.++...|+.+ ..+..+|+.+ |+.+|++|.+.|+.||.+|+..
T Consensus 520 ~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999654 67777777777777 6677888874 9999999999999999999998
Q ss_pred Hh-hccCCCC---chhHHhhHHHHhCCChhhhhccccccccccccCch--hHHHHHHHHHHhCCCCCcccccCCceeec
Q 007384 508 VL-GCLQLPY---NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPVVVD 580 (605)
Q Consensus 508 ~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~a~~~~~~a~~~g~~p~~~~~~~~~~~~ 580 (605)
++ +|++.+. +..+++.|.+.+|+.|+..+|+ ++++.+++.+ ++|..++++| |..||+.+|.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m---------~~~pd~~~~~ 661 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM---------PITPDPAVWG 661 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC---------CCCCCHHHHH
Confidence 86 7887653 4567888888899999999998 6999988754 6777777765 3556666665
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-64 Score=554.18 Aligned_cols=507 Identities=20% Similarity=0.293 Sum_probs=402.8
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007384 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (605)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------------------~~~l~ 68 (605)
++..+||.++ +.|++++|+++|++|...|+.|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 3455666655 899999999999999988876653332 34455
Q ss_pred HHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007384 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (605)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 148 (605)
..+.+.|++++|.++|+.|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcC
Q 007384 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (605)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (605)
++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|+++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999988999888888888888888888888888875 457778888888888888888888888887664
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----------
Q 007384 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (605)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 298 (605)
++.||..+|++++.+|++.|+++.|.++++.+.+.|+.++..+|++||.+|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 6677777777777777777777777777777777666666666666666666666666655555554332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 007384 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (605)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (605)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356777777777777777777777777777777777777888888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H
Q 007384 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (605)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~ 437 (605)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|.+.|++++|.++|+.|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 9988887 589999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHhhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHhhccCCCCc
Q 007384 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (605)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 517 (605)
.|+.|+..+|++++++|+| +|.+. +|..++++| +++||..++..+++.+..+.+
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~-------------------eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLT-------------------EAYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHH-------------------HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999765 44443 345556665 578999999998865566666
Q ss_pred hhHHhhHHH-HhCCChhhh-hccccccccccccCchhHHHHHHHHHHhCCCCCccc
Q 007384 518 ADIRERLVE-NLGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (605)
Q Consensus 518 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~ 571 (605)
.+..+...+ -..+.|+.. .|..+..+....|++ ++|.++.++|++.|+.++..
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~-~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKW-DEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh-HHHHHHHHHHHHcCCCCCCC
Confidence 665554433 345677643 333222233333553 57889999999999888654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-62 Score=526.39 Aligned_cols=465 Identities=23% Similarity=0.399 Sum_probs=413.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC----CCChhhHHHHHHHHHhC
Q 007384 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASS 105 (605)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~ 105 (605)
..++.+.+.|.+++|..+|+.|.. ++...+..++..|.+.|++++|.++|+.|. .||..+|+++|.+|++.
T Consensus 411 ~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 411 KFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 344556689999999999999975 345566677888888999999999999874 68999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (605)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 186 GIMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 186 ~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+. ++.|+..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 99986 678999999999999999999999999999999985 78999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH
Q 007384 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (605)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (605)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.++.||..+||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 007384 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-- 421 (605)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 421 (605)
+||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHhhhhhhhhccCCCccc
Q 007384 422 --K-------------------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI 478 (605)
Q Consensus 422 --~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~ 478 (605)
. +..+.|..+|++|++.|+.||..+|+.+|.++.+ ....+..+.+.+.. .+. ..+
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~-~~~ 881 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SAD-SQK 881 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCC-Ccc
Confidence 1 2246799999999999999999999999965433 23333333222110 000 000
Q ss_pred hhh----------hHHHHHHHHHHHHHcCCCCcHH
Q 007384 479 ENK----------WTSLALMVYREAIVAGTIPTVE 503 (605)
Q Consensus 479 ~~~----------~~~~a~~~~~~m~~~g~~p~~~ 503 (605)
... +...|+.+|++|...|+.|+..
T Consensus 882 ~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 882 QSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 011 2234777777777777777653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-60 Score=508.48 Aligned_cols=456 Identities=20% Similarity=0.307 Sum_probs=404.2
Q ss_pred HhhhHHHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007384 71 CKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (605)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (605)
+.+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 344455566666665542 478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999997 6899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (605)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 305 (605)
. ++.||..++++|+.+|++.|++++|.++|+.|.. +|..+||+||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 253 ~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 253 T--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred h--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 5 7899999999999999999999999999999964 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (605)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (605)
||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 589999999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhHHHHHhh
Q 007384 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTL 464 (605)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~a~~~ 464 (605)
++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +|.+
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~ 478 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLL 478 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCH
Confidence 9999999999999999999999999999999999999999999999999986 5999999999999999766 4444
Q ss_pred hhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHhhccCCCCchhHHhhH-HHHhCCChh-hhhcccccc
Q 007384 465 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL-VENLGVSAD-ALKRSNLCS 542 (605)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 542 (605)
++ |.++|++ .++.||..++..++..+....+.+..+.+ .+..++.|+ ..+|. .
T Consensus 479 ~e-------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~---~ 533 (697)
T PLN03081 479 DE-------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV---V 533 (697)
T ss_pred HH-------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH---H
Confidence 33 3444443 47899999999987444333333333333 334567775 45665 4
Q ss_pred ccccccCc--hhHHHHHHHHHHhCCCCCc
Q 007384 543 LIDGFGEY--DPRAFSLLEEAASFGIVPC 569 (605)
Q Consensus 543 ~i~~~g~~--~~~a~~~~~~a~~~g~~p~ 569 (605)
+++.+++. .++|..++++|.+.|+...
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 66665433 3789999999999997643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-57 Score=491.81 Aligned_cols=457 Identities=18% Similarity=0.262 Sum_probs=405.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 007384 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 111 (605)
.+.+.+.++++.|.+++..|.+.|+.| +...+..++..+.+.|++++|.++|+.|+.||.++||+++.+|++.|++++|
T Consensus 130 l~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 130 VEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHH
Confidence 333447788888888888888888755 4556666778888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (605)
+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|+++|++.|++++|.++|++|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 286 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-- 286 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007384 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (605)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (605)
++|.++||++|.+|++.|+.++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+.|+.|+..+
T Consensus 287 --~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 287 --EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred --CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 468999999999999999999999999999874 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (605)
|++||.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999964 68899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 352 AKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 430 (605)
.|.+++|.++|+.|.+ .|+.|+..+|+.|+.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999975 689999999999999999999999999999876 478999999999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHh--hHHHHHhhhhhhhhccC----C-------------------CccchhhhHH
Q 007384 431 LLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNS----G-------------------RPQIENKWTS 484 (605)
Q Consensus 431 ~~~~~~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~----~-------------------~~~~~~~~~~ 484 (605)
+++++.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-.- + +|..... ..
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i-~~ 592 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREI-YQ 592 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHH-HH
Confidence 9999875 5564 6689999999876 67777766554432110 0 1111111 12
Q ss_pred HHHHHHHHHHHcCCCCcHHHH
Q 007384 485 LALMVYREAIVAGTIPTVEVV 505 (605)
Q Consensus 485 ~a~~~~~~m~~~g~~p~~~~~ 505 (605)
....+..+|.+.|..||...+
T Consensus 593 ~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 593 KLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred HHHHHHHHHHHcCCCCCcchh
Confidence 356778899999999987543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-27 Score=269.32 Aligned_cols=512 Identities=16% Similarity=0.077 Sum_probs=351.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCC
Q 007384 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (605)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 107 (605)
....+.+.|++++|.+.++.+...+ |.+......++..+...|++++|.++|+++. +.+...+..+...+...|+
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3344446666666666666665554 3444444555555566666666666666542 2344555566666666667
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (605)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (605)
+++|...++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++++|.+.|++
T Consensus 413 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 413 PSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777666666543 2234445556666777777777777777776543 45667788888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007384 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (605)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (605)
+.+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|...++++.+.+ +.
T Consensus 491 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 491 ALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 77654 445666777778888888888888888887753 23456677778888888888888888888887765 55
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007384 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (605)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (605)
+...+..++..|.+.|++++|..+++.+.+... .+..+|..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 667788888888888888888888888877543 367788888888888999999999998888765 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 427 (605)
+|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 8889999999999998888754 4457888888899999999999999999888764 4567778888888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHhhhhhhhhccCCCccchhhhH------------HHHHHHHHHH
Q 007384 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT------------SLALMVYREA 493 (605)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~m 493 (605)
|...++++.+.+ |+..++..+..++.+ ++++|....+...... |.+...+. ..|...|+++
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999988753 444555556665543 4555555433322222 22222222 2488889988
Q ss_pred HHcCCCCcHHHHHHHhhc--cCCCCchhHHhhHHHHhCCChhhhhcc-ccccccccccCchhHHHHHHHHHHhC
Q 007384 494 IVAGTIPTVEVVSKVLGC--LQLPYNADIRERLVENLGVSADALKRS-NLCSLIDGFGEYDPRAFSLLEEAASF 564 (605)
Q Consensus 494 ~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~a~~~~~~a~~~ 564 (605)
++. .|+.+.....++. ...+. .+....+.+...+.|+..... .+..+....|+ .++|...+++|++.
T Consensus 797 ~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 797 VKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI 866 (899)
T ss_pred HHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 875 4666554444433 33333 444555555566666544321 11111112233 46899999999986
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.1e-26 Score=260.17 Aligned_cols=520 Identities=13% Similarity=0.067 Sum_probs=407.5
Q ss_pred cCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHH
Q 007384 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (605)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (605)
|.+..........+.+.|++++|.+.|+++.+.+ |.+...+..+...+...|+.++|.+.|+.+. +.+......+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 437 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence 3333333444455668999999999999999876 6677777777778888899999999998754 2344566677
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007384 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (605)
Q Consensus 99 l~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (605)
+..+.+.|++++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 888999999999999999998753 6778899999999999999999999999998764 45677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007384 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (605)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (605)
++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++... .+.+...+..+...|.+.|++++|..+++
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998775 557888999999999999999999999998764 24556678889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007384 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (605)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (605)
.+.+.. +.+..+|..+...|.+.|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 998765 677889999999999999999999999999876543 67788889999999999999999999998875 556
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 418 (605)
..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|++.|+++... .|+..++..+..+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHH
Confidence 8899999999999999999999999998875 566788888999999999999999999999875 5666888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHhhhhhhhhccCCCccchhhhHH-----------H
Q 007384 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS-----------L 485 (605)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------~ 485 (605)
+.+.|++++|.+.++++.+.. ..+...+..+...|.+ ++++|....+...... |.+...+.. .
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---PDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCcHH
Confidence 999999999999999998753 3456667767666653 5666666555443333 223332222 3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHhhcc--CCCCchhHHhhHHHHhCCChh-hhhccccccccccccCchhHHHHHHHHHH
Q 007384 486 ALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (605)
Q Consensus 486 a~~~~~~m~~~g~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~a~ 562 (605)
|+..++++... .|+.+.+...+|.. ..+.-.+....+.+...+.|. +..+..+.......|+ .++|..++++++
T Consensus 822 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR-KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 77788877764 57766555444433 344444455555555555553 4443332222222244 367888888875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.4e-18 Score=197.57 Aligned_cols=563 Identities=14% Similarity=0.093 Sum_probs=298.5
Q ss_pred CccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHH
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRF 83 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~ 83 (605)
..|.+..........+.+.|+.++|.+.++++.+.. |.+..+. ...++.+...|++++|++.
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 345555555556666667778888888887777766 4443322 1223345556777777777
Q ss_pred HhhCCC---CChh-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-
Q 007384 84 FKLVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI- 158 (605)
Q Consensus 84 ~~~~~~---~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 158 (605)
|++..+ ++.. ............|+.++|...++.+.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 135 ~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 135 YDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 776542 2221 11111111223477777777777777654 44566677777777777777777777777644210
Q ss_pred -----------------CCC-HHHHH----------------------------------HHHHHHHhcCCHHHHHHHHH
Q 007384 159 -----------------EPN-VHTYG----------------------------------ALIDGCAKAGQVAKAFGAYG 186 (605)
Q Consensus 159 -----------------~~~-~~~~~----------------------------------~li~~~~~~g~~~~A~~~~~ 186 (605)
.+. ...+. .....+...|++++|+..|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 000 00000 11223445566666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHH------------HHHHHHHHhcCChHHHH
Q 007384 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRAR 254 (605)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~A~ 254 (605)
+..+.. +.+...+..+...+.+.|++++|+..|++.....+. .+....+ ......+.+.|++++|.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 666543 335556666666666666666666666666543111 1111111 11123455666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+....
T Consensus 372 ~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 372 RLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence 6666666654 444555666666666666666666666666654332 3344444444443 345566666555432211
Q ss_pred C--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007384 335 I--------SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (605)
Q Consensus 335 ~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (605)
. ......+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|...++++.+. .
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~ 525 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--K 525 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 0 0011233445566667777777777777777653 234556666777777777777777777777653 3
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhhHHHHHhhhhhhhhccCCCccchh
Q 007384 407 P-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-----MCSRRYEKARTLNEHVLSFNSGRPQIEN 480 (605)
Q Consensus 407 p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 480 (605)
| +...+..+...+...++.++|...++.+......++......-+. ..+..+...++..++...+.. .|.+..
T Consensus 526 P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~ 604 (1157)
T PRK11447 526 PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTR 604 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCch
Confidence 4 334444444455667777777777766543222222211110000 001112222233333333321 222222
Q ss_pred hh------------HHHHHHHHHHHHHcCCCCcHHHHHHHhhc--cCCCCchhHHhhHHHHhCCChhhhhc-cccccccc
Q 007384 481 KW------------TSLALMVYREAIVAGTIPTVEVVSKVLGC--LQLPYNADIRERLVENLGVSADALKR-SNLCSLID 545 (605)
Q Consensus 481 ~~------------~~~a~~~~~~m~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 545 (605)
.+ ...|+..|++.++. .|+.+.....++. ...+...+....+.+.....|+.... ..+.....
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 22 22488888887765 6776544433332 23344444444444444455543321 11111111
Q ss_pred cccCchhHHHHHHHHHHhCCCCCcccc-cCC-------ceeeccccCcccchhHHHHHHHhh
Q 007384 546 GFGEYDPRAFSLLEEAASFGIVPCVSF-KEI-------PVVVDARKLEIHTAKPFSARRISF 599 (605)
Q Consensus 546 ~~g~~~~~a~~~~~~a~~~g~~p~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 599 (605)
..|+ .++|..+++++++. .|+.+- ..+ +.+....|....+.+.|..++...
T Consensus 683 ~~g~-~~eA~~~~~~al~~--~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 683 ALGD-TAAAQRTFNRLIPQ--AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred hCCC-HHHHHHHHHHHhhh--CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 2343 46788999998864 343221 112 223467788888999998887643
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.3e-20 Score=190.94 Aligned_cols=301 Identities=13% Similarity=0.109 Sum_probs=177.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCC
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (605)
.+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3556678888888888887764 44566777777788888888888888887776431111 2456777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC---HHHHHHHHHHHHhcCChHHHH
Q 007384 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (605)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~ 254 (605)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+..... ..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888887777653 44566777777777777777777777777765311 1111 112334455556666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
..|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665543 334455555666666666666666666666554322223344555555555555555555555555442
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCH
Q 007384 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNT 409 (605)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 409 (605)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.++++.|++
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33334455555555555555555555555443 3555555555544442 33555555555555554444443
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.3e-20 Score=187.16 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=253.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhcc
Q 007384 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (605)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 210 (605)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999874 44667899999999999999999999999987642222 25678889999999
Q ss_pred CCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHH
Q 007384 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (605)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (605)
|++++|..+|+++... .+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999863 245677899999999999999999999999988653322 224567788889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
+|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876533 4667788889999999999999999999886533335678899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 007384 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (605)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~p~ 443 (605)
+. .|+...+..++..+.+.|++++|..+|+++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 466667788999999999999999999998874 6999999988887764 5689999999999998777666
Q ss_pred HH
Q 007384 444 LV 445 (605)
Q Consensus 444 ~~ 445 (605)
..
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6.3e-20 Score=177.04 Aligned_cols=433 Identities=14% Similarity=0.119 Sum_probs=333.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHH--Hh-hCCCCChhhHHHHHHHHHhC
Q 007384 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--FK-LVPNPTLSTFNMLMSVCASS 105 (605)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--~~-~~~~~~~~~~~~ll~~~~~~ 105 (605)
+.....+.+.|++.+|.+.-..+-..+ |.+.....++...+.+..+.+..... .. +..+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334455668899999998888777766 33333333333333333333332221 11 12234567888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY-GALIDGCAKAGQVAKAFGA 184 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~ 184 (605)
|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+...|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999864 446889999999999999999999999999876 5665543 4455556668999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
|.+.++.. +-=.+.|+.|...+-..|++..|++.|++...- .|+ ...|-.|...|...+.+++|...+.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 99888763 334678999999999999999999999998754 444 347888899999999999999999988776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH
Q 007384 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (605)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (605)
. +....++..+...|...|..+-|+..+++..+..+. =...|+.+..++-..|++.+|.+.+....... +-.....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 4 555778888888999999999999999998876433 35689999999999999999999999998875 44577889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 007384 344 SLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACER 421 (605)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 421 (605)
.|...|...|.+++|..+|....+. .|. ....|.|...|-+.|++++|+..+++.++ +.|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 9999999999999999999998874 455 56789999999999999999999999887 6887 4779999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhhHHHHHhhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCC
Q 007384 422 KDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500 (605)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 500 (605)
.|+++.|.+.+.+++. +.|...- .+-|-.. |.++|.+.+ |+.-|++.+ .++|
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi----~kDsGni~~-------------------AI~sY~~aL--klkP 487 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASI----YKDSGNIPE-------------------AIQSYRTAL--KLKP 487 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHH----hhccCCcHH-------------------HHHHHHHHH--ccCC
Confidence 9999999999999987 5665432 2223333 555665544 455555544 3688
Q ss_pred cHHHH
Q 007384 501 TVEVV 505 (605)
Q Consensus 501 ~~~~~ 505 (605)
|.+..
T Consensus 488 DfpdA 492 (966)
T KOG4626|consen 488 DFPDA 492 (966)
T ss_pred CCchh
Confidence 87644
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.1e-18 Score=198.17 Aligned_cols=388 Identities=11% Similarity=0.042 Sum_probs=300.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCh---hhHHH-----------
Q 007384 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL---STFNM----------- 97 (605)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~---~~~~~----------- 97 (605)
.+...|++++|+..|++.++.. |.+...+..+...+...|+.++|+..|++.. .|+. ..|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4557899999999999999877 7777888888888888899999999998753 2221 12222
Q ss_pred -HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007384 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (605)
Q Consensus 98 -ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (605)
....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2335678899999999999998875 5567788888999999999999999999998764 345667777777774 46
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcC
Q 007384 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (605)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (605)
+.++|...++.+...... .....+..+...+...|++++|.+.|++..... +.+...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 789999888766433100 012235556777888999999999999988642 334567778888999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 007384 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAGK 319 (605)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~ 319 (605)
++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988765 5566666666667788999999999998765433222221 12344567888999
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007384 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (605)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (605)
.++|..+++. .+.+...+..+...|.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998872 25566777889999999999999999999999864 45688899999999999999999999998
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 400 MKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 400 m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
..+. .| +..++..+..++...|++++|.++++++...
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 8763 45 4556777888888999999999999999875
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=5.2e-20 Score=177.60 Aligned_cols=391 Identities=15% Similarity=0.155 Sum_probs=328.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHH
Q 007384 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (605)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~ 110 (605)
.+.+..+++...+--....+.. |.....+..++.++...|++++|+.+++.+. +..+..|..+..++...|+.+.
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~ 168 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL 168 (966)
T ss_pred hhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc
Confidence 3445556666655555555554 6778888889999999999999999999764 4567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 111 AFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIM 188 (605)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (605)
|.+.|...++. .|+... .+.+...+...|++++|...|.+.++. .|. ...|+.|...+...|+...|++-|++.
T Consensus 169 a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 169 AVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred cHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 99999998875 565443 344556666789999999999998876 343 567999999999999999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007384 189 RSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (605)
Q Consensus 189 ~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (605)
.+. .|+ ...|-.|...|...+.++.|...+.+.... .|+ ..++..+...|-..|.++.|+..+++..+.. +
T Consensus 245 vkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P 317 (966)
T KOG4626|consen 245 VKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-P 317 (966)
T ss_pred hcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-C
Confidence 876 344 668888999999999999999999988753 444 5678888888999999999999999999875 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 007384 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (605)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (605)
.-+..|+.|..++-..|+..+|...+.+.+..... -....+.+...|...|.+++|..+|....+.. +--....+.|.
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa 395 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLA 395 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHH
Confidence 55789999999999999999999999999886543 45678889999999999999999999988764 23356788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 007384 347 GACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDD 424 (605)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 424 (605)
..|-+.|++++|...+++..+. .|+ ..+|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|.+.+-..|+
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCC
Confidence 9999999999999999999874 677 57899999999999999999999999887 4676 5678999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHH
Q 007384 425 VEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p~~~ 445 (605)
+.+|++-+++.++ ++||..
T Consensus 472 i~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 472 IPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred cHHHHHHHHHHHc--cCCCCc
Confidence 9999999999998 666643
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.7e-18 Score=180.08 Aligned_cols=326 Identities=12% Similarity=0.046 Sum_probs=137.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007384 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (605)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (605)
..+.+.|+++.|+.+++...... +-+...+..++.+....|++++|...|+++.... +.+...+..+...+.+.|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 33444444445544444444332 2223333333333444444555555554444432 223334444444444445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007384 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (605)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (605)
+|...|+++.... +.+...+..+...+...|+.++|...++.+.... +.+...+..+ ..+.+.|++++|...++.
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 5555444444431 2233344444444444455555544444443211 1111111111 123444455555544444
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 007384 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQGI 335 (605)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~ 335 (605)
+.+....++...+..+...+.+.|++++|...+++..+.... +...+..+...+...|++++ |...++++.+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 443321122222233334444445555555555544443322 33344444444444444443 444444444432
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-HHH
Q 007384 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSI 414 (605)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 414 (605)
+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|+..|+++.+. .|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 2234444444455555555555555555444432 122334444444455555555555555444432 233222 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007384 415 LLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 415 ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+..++...|++++|...|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 23344445555555555554444
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=4.7e-17 Score=173.71 Aligned_cols=394 Identities=12% Similarity=0.037 Sum_probs=275.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCh
Q 007384 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (605)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 108 (605)
-+.+.+.|++++|+..|++.++.. |. ..++..++..+...|++++|++.+++.. +.+...|..+..++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 355668999999999999998876 43 4566677788888899999999998754 44667888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---------------------------CCCCC
Q 007384 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------GIEPN 161 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~~~ 161 (605)
++|..-|......+ ..+......++..+........+...++.-... ...+.
T Consensus 211 ~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665443 222221112221111110011111111100000 00000
Q ss_pred -HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC-H
Q 007384 162 -VHTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H 234 (605)
Q Consensus 162 -~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~ 234 (605)
...+..+... ....+++++|.+.|++....+ . +.+...|+.+...+...|++++|+..++..... .|+ .
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~ 365 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVT 365 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcH
Confidence 0000111100 012367889999999888764 2 234556777788888899999999999988753 343 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (605)
..|..+...+...|++++|...|+++.+.+ +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 577788888889999999999999988875 566788888999999999999999999998887543 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCC
Q 007384 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGD 388 (605)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g 388 (605)
.+.|++++|+..++...+.. +.+...++.+...+...|++++|.+.|++..+.....+. ..++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 89999999999999888764 556788888899999999999999999988765321111 11222223344468
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 389 QLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
++++|.+++++.... .|+ ...+..+...+...|++++|...|+++.+.
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999987764 454 456888889999999999999999988763
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.6e-17 Score=176.60 Aligned_cols=321 Identities=9% Similarity=0.010 Sum_probs=181.5
Q ss_pred HhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007384 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (605)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 147 (605)
+.+.|++++|+.+++.+. +.+...+..++.+....|++++|...++.+.+.. |.+...+..+...+...|++++|.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 334456666666655432 2233344444455555666666666666666543 444555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCc
Q 007384 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (605)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (605)
..+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+....
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666666542 3345556666666666666666666666655442 1222222222 23555666666666666654421
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHHCCCCCC
Q 007384 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPD 303 (605)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~ 303 (605)
..++......+...+.+.|++++|...++++.+.+ +.+...+..+...+...|++++ |...|++..+..+. +
T Consensus 208 --~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 --ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred --CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-C
Confidence 11222333334455666666666666666666554 4455666666666666666664 56666666655332 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 007384 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALIT 382 (605)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 382 (605)
...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+. .|+. ..+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 5556666666666666666666666666553 334455555666666666666666666666654 2332 22333445
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 007384 383 ALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~ 402 (605)
++...|+.++|+..|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 56666666666666666554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=5e-17 Score=176.64 Aligned_cols=402 Identities=10% Similarity=0.000 Sum_probs=304.5
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChhhHHHHHHHHHh
Q 007384 29 LHSYNR-LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCAS 104 (605)
Q Consensus 29 ~~~~~~-l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~ 104 (605)
+.=|.. ....|+.++|++++.+..... |.....+..++..+...|++++|..+|++. .+.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 333433 448999999999999998744 566666778888889999999999999984 35567778888888999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (605)
.|++++|+..++.+.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998874 55667 8889999999999999999999999874 44666777788889999999999999
Q ss_pred HHHHHhCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHhhCcCCCCCCHH-HH----HHHHHHHH
Q 007384 185 YGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKACA 245 (605)
Q Consensus 185 ~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~----~~ll~~~~ 245 (605)
++.... .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+..+.
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHHH
Confidence 987664 2221 11222233222 22334 77888888887531 1123221 11 11133456
Q ss_pred hcCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 007384 246 NAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVE 321 (605)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~ 321 (605)
..|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+..... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887632 22 223335778999999999999999987654321 1345666677889999999
Q ss_pred HHHHHHHHHHHCCC-----------CCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007384 322 AAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (605)
Q Consensus 322 ~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (605)
+|...++.+..... .|+ ...+..+...+...|++++|.++++++.... +.+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999999987631 122 2345667788999999999999999998764 55688999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 388 DQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
|++++|++.+++.... .|+ ...+......+...|++++|..+++++++ ..|+..
T Consensus 407 g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 407 GWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999998874 575 56666777889999999999999999998 455554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=5.3e-16 Score=165.65 Aligned_cols=332 Identities=12% Similarity=0.004 Sum_probs=194.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007384 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (605)
Q Consensus 97 ~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (605)
.....+.+.|++++|...|+..++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4445566677777777777776653 4566667777777777777777777777776653 334556677777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH-----------------------------HHHHH------------------------
Q 007384 177 QVAKAFGAYGIMRSKNVKPDRV-----------------------------VFNAL------------------------ 203 (605)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~-----------------------------~~~~l------------------------ 203 (605)
++++|+..|......+-..+.. .+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7777766554433221000000 00000
Q ss_pred ------HHH------HhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007384 204 ------ITA------CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (605)
Q Consensus 204 ------i~~------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (605)
+.. ....+++++|.+.|+.........+.+...+..+...+...|++++|...|++..+.. +.....
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 000 0112456666666666654311112233455556666666777777777777766654 334556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (605)
|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 666666677777777777777766665432 45566666666777777777777777766654 3445556666666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHHhcC
Q 007384 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-IT-------YSILLVACERKD 423 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~~~~~~g 423 (605)
.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++..+. .|+. .+ +...+..+...|
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhh
Confidence 777777777777666542 334566666667777777777777777766553 2211 11 111111223356
Q ss_pred CHHHHHHHHHHHHH
Q 007384 424 DVEVGLMLLSQAKE 437 (605)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (605)
++++|.++++++.+
T Consensus 523 ~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 523 DFIEAENLCEKALI 536 (615)
T ss_pred hHHHHHHHHHHHHh
Confidence 77777777776665
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.7e-15 Score=159.94 Aligned_cols=441 Identities=13% Similarity=0.115 Sum_probs=308.7
Q ss_pred ccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHH-HH
Q 007384 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN-ML 98 (605)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~l 98 (605)
+|......-...-...++|+++.|++.|++..+.+ |.+. .++ -++.++...|+.++|+..+++...|+...+. .+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34444433333444459999999999999999987 5542 333 5556666679999999999998766444333 33
Q ss_pred --HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007384 99 --MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (605)
Q Consensus 99 --l~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (605)
...+...|++++|.++++.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 446788899999999999999875 556788888899999999999999999999876 566666655544554566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHH------HHHHHHH-----H
Q 007384 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC-----A 245 (605)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------~~ll~~~-----~ 245 (605)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ..+++.- .
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 7767999999999884 45677888899999999999999888765331 112211111 1111110 0
Q ss_pred hcCC---hHHHHHHHHHHHhcC--CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 246 NAGQ---VDRAREVYKMIHKYN--IKGTPE----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (605)
Q Consensus 246 ~~g~---~~~A~~~~~~~~~~~--~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (605)
...+ .+.|..-++.+...- .++... +..-.+-++...|++.++++.|+.+...+......+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1122 345666666655521 122212 2234466778889999999999999988865445678889999999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CC--C-HHHH
Q 007384 317 AGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KP--T-VSTM 377 (605)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~--~-~~~~ 377 (605)
.+++++|..++..+.... .+++......|.-+|...+++++|..+++.+.+... .| | ...+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999987653 233445567888999999999999999999986311 12 3 2334
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH--
Q 007384 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMC-- 454 (605)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~-~li~~~-- 454 (605)
..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+.. +.|+..... .....+
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHh
Confidence 456777888999999999999997752 44778888999999999999999999977766 456643322 222211
Q ss_pred HhhHHHHHhhhhhhhhccCC
Q 007384 455 SRRYEKARTLNEHVLSFNSG 474 (605)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~ 474 (605)
...+.+|..+.+.+....+.
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCC
Confidence 12566666666655554444
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2.4e-15 Score=139.69 Aligned_cols=402 Identities=16% Similarity=0.191 Sum_probs=287.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH---hhh------------------------HHHHHHHHH
Q 007384 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQ------------------------KAIKEAFRF 83 (605)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~------------------------~~~~~A~~~ 83 (605)
..-.+|.+|.+.++.-+|+.|...|+ +-.......+++.. .+. ++-+-|. +
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L 198 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-L 198 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-H
Confidence 34456789999999999999999886 33333333333321 110 0112233 4
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 007384 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (605)
Q Consensus 84 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 163 (605)
+-+..+....++..+|.+.++-...+.|.+++++-.....+.+..+||.+|.+-+-.. ..++..+|.+..+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 5555567788999999999999999999999999988777999999999998754432 378999999999999999
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHhhCc--CCC----CC
Q 007384 164 TYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEV--HPV----DP 232 (605)
Q Consensus 164 ~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~----~~ 232 (605)
|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...- ..+ +.
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998765 46778899999999999999999999999887644 444554443311 112 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 233 DHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (605)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 305 (605)
|...+.+.+..|.+..+.+.|.++........ +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 56677888999999999999999988775432 1222 2346678888899999999999999999888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-CH-------------HHHHHHHH-------H
Q 007384 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NW-------------QKALELYE-------H 364 (605)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~-------------~~A~~~~~-------~ 364 (605)
+...++++..-.+.++-..+++..++..|..-+.....-++..+++.+ +. +-|..+++ +
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999988888888887764444443333444444433 11 01111221 2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007384 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (605)
Q Consensus 365 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 440 (605)
+.+. .......+...-.+.+.|+.++|.++|..+.+++ ..|......-++++..+..+...|..+++.|...++
T Consensus 515 ~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 515 QRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2222 3344566677777888888888888888875543 223334444566667777788888888888766443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=2e-15 Score=164.27 Aligned_cols=367 Identities=13% Similarity=0.082 Sum_probs=274.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007384 65 ARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (605)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (605)
.-...+....|+.++|++++.... +.+...+..+...+...|++++|..+++...+.. +.+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 334455666788999999998754 3445568889999999999999999999998764 556778888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007384 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (605)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (605)
++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999998873 44566 8889999999999999999999999874 4456667778888888999999999998
Q ss_pred HHhhCcCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHc
Q 007384 222 EMNAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQ 281 (605)
Q Consensus 222 ~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~ 281 (605)
.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+. ..+ ...+..+..
T Consensus 175 ~~~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 175 DANL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred hCCC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 7653 2321 11222222222 12233 7788888888754 112221 111 111344567
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCHHH
Q 007384 282 TGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQK 357 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 357 (605)
.|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987642 432 22335678999999999999999988654211 13456667778899999999
Q ss_pred HHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007384 358 ALELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (605)
Q Consensus 358 A~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 423 (605)
|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 9999999986521 123 234566778899999999999999999875 2345677888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 007384 424 DVEVGLMLLSQAKEDGVIPNL 444 (605)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~ 444 (605)
++++|++.++++.+ +.|+.
T Consensus 408 ~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 408 WPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred CHHHHHHHHHHHHh--hCCCC
Confidence 99999999999998 45664
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=6e-14 Score=152.90 Aligned_cols=501 Identities=11% Similarity=-0.019 Sum_probs=282.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHHHHHHHHhCCChHHHHHH
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQV 114 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~ 114 (605)
..|++++|+..|+...+.+ |.+...+..+++++...|+.++|+..+++.. .|+...|..++..+ +++.+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4589999999999998887 7778888888888888888899988888764 33333333333222 778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 007384 115 LRLVQEAGLKADCKLYTTLITT--------CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 185 (605)
++++.+.. |-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 88887764 4445555555444 4444 33333333 2222222334433333 66777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007384 186 GIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (605)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (605)
.++.+.+ +.+..-...|..+|.. .++ +++..++.. .+..+...+..+...|.+.|+.++|.++++.+....
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~------~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ------GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch------hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 7776664 2333334444445554 244 444444321 112344455555555555555555555554432211
Q ss_pred C-------------------------------------------------------------------------------
Q 007384 265 I------------------------------------------------------------------------------- 265 (605)
Q Consensus 265 ~------------------------------------------------------------------------------- 265 (605)
.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 0
Q ss_pred ---------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 007384 266 ---------------KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK---VEAAFE 325 (605)
Q Consensus 266 ---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~---~~~a~~ 325 (605)
+.+....-.+.-...+.|+.++|.++|+..... ...++.....-++..|.+.+. ..++..
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 001111111122233445556666666555431 112233334456666665554 222222
Q ss_pred H----------------------HHHHHHC-C-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007384 326 I----------------------LQEAKNQ-G-ISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (605)
Q Consensus 326 ~----------------------~~~~~~~-~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (605)
+ ....... + .++ +...|..+..++.. ++.++|...+.+.... .|+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 2 1111111 1 133 56677777777766 7888888877777654 466444334
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH--h
Q 007384 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCS--R 456 (605)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~~~--~ 456 (605)
+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++.++.. |+... +..+...+. .
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 445556899999999999987653 5666667777788888999999999999988753 44322 222222220 2
Q ss_pred hHHHHHhhhhhhhhccCCCccchhhhHH------------HHHHHHHHHHHcCCCCcHHHHHHHhhccC--CCCchhHHh
Q 007384 457 RYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRE 522 (605)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~~~~~~--~~~~~~~~~ 522 (605)
++++|....+.....++. ...|.. .|...|++.+. ..|+...+...+|... .+...+...
T Consensus 591 r~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 466666654443333331 223332 37777777665 4788887776666443 444445555
Q ss_pred hHHHHhCCChhhhh-ccccccccccccCchhHHHHHHHHHHhCCCCCccc
Q 007384 523 RLVENLGVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (605)
Q Consensus 523 ~~~~~~~~~~~~~~-~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~ 571 (605)
.+.+...+.|+... ...+.......|+ .++|...++++.+. .|+..
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~l--~P~~a 711 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVIDD--IDNQA 711 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc--CCCCc
Confidence 56666667776432 2222222233343 46788999999875 56544
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.5e-13 Score=149.97 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=85.0
Q ss_pred CccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-----------
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----------- 88 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------- 88 (605)
..|.+......+...+++.|+.++|+..+++..+.+ |.+..++..+..+ ++.++|..+|+++.
T Consensus 73 ~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~ 146 (987)
T PRK09782 73 QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPT 146 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHH
Confidence 345555555556666667777777777777766665 4455444443222 33444444444432
Q ss_pred -------------------------------CCChhhHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 89 -------------------------------NPTLSTFNML-MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136 (605)
Q Consensus 89 -------------------------------~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 136 (605)
.|+....... .+.|.+.+++++|+.++..+.+.+ +.+......|..+
T Consensus 147 ~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~a 225 (987)
T PRK09782 147 LRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDV 225 (987)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 1122222222 455555566666666666665554 3334444445555
Q ss_pred HHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 137 CAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (605)
Q Consensus 137 ~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (605)
|.. .++ +++..++.. .+..+...+..+...|.+.|+.++|.++++++..
T Consensus 226 y~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 555 244 555555332 1124566666777777777777777777766543
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.1e-14 Score=142.48 Aligned_cols=426 Identities=12% Similarity=0.091 Sum_probs=246.8
Q ss_pred CccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhh--
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLST-- 94 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~-- 94 (605)
.++++...-.+.-|.+.-.|++..+..+...+...... +.-+.-+..+++.+-..|++++|..+|.+.. .++.+.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 45666777777778888888888888888877765421 1112224556677777788888888876543 233333
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
+--+...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+....- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 3345566777888888888887777653 445666666666666554 3455555555554432 335555555555
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCc-CCCCCCH------HHHHH
Q 007384 171 GCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDH------ITIGA 239 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~------~~~~~ 239 (605)
.|-...-+.. +.+|.... ..+-.+.....|.+...+...|++..|...|....... ....+|. .+--.
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 5443333222 44443322 23333455555666666666666666665555544320 0011211 11111
Q ss_pred HHHHHHhc----------------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH
Q 007384 240 LMKACANA----------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (605)
Q Consensus 240 ll~~~~~~----------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (605)
+....-.. +...+|...+......+ ..++.+++.+...+.+...+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 22222223 34455555555555544 44556666666666666666
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 007384 286 EFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (605)
Q Consensus 286 ~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (605)
..|.+-|...... ...+|..+.-+|...|.+ .+..++|+++|.++.+.. +-|...-|.+.-.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 6666655554432 122455555555554432 234567777777777665 55666677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLML 431 (605)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 431 (605)
|++.+|..+|.++.+... .+..+|-.+.++|..+|++..|+++|+...+ ..-.-+......|..++...|.+.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777777777776542 2345677777777777777777777777443 33233556666777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHH
Q 007384 432 LSQAKEDGVIPNLVMFKCII 451 (605)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li 451 (605)
...+...-..-..+.+|..+
T Consensus 739 ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHhCCccchHHhHHHH
Confidence 77666643333344455443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.1e-13 Score=141.38 Aligned_cols=430 Identities=13% Similarity=0.063 Sum_probs=294.5
Q ss_pred CCCCCCCccCchhhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC-
Q 007384 14 PNGKHANYAHDVSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN- 89 (605)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 89 (605)
|....+..|.++...+-..-.-. ....+..+.+++...-..+ +.++.....++..+-..|++..+..+..-+..
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 44456678877777776654433 3457788899998888777 67888888888888877888888877765431
Q ss_pred -----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 007384 90 -----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162 (605)
Q Consensus 90 -----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 162 (605)
--..+|-.+.++|-..|++++|...|....+. .+| +..+--|.+.|.+.|+++.+...|+.+.... +-+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 12345778899999999999999999888765 344 3455668899999999999999999998763 4456
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh----hCcCCCCCCH
Q 007384 163 HTYGALIDGCAKAG----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN----AEVHPVDPDH 234 (605)
Q Consensus 163 ~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~ 234 (605)
.+...|...|+..+ ..+.|..++.+..+.- +.|...|-.+...+-...-+. ++..|.... .. +..+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~--~~~ip~ 452 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESK--GKQIPP 452 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHc--CCCCCH
Confidence 67777777787765 5677888877777653 557788888777776554333 355544332 22 223556
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKY---NIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI---- 301 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---- 301 (605)
...|.+...+...|+++.|...|+..... ...++. .+-..+...+-..++++.|.+.|..+.+..+.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDA 532 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHH
Confidence 78899999999999999999999988665 112222 12223444444555666666666655543211
Q ss_pred -----------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHh
Q 007384 302 -----------------------------PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSN 351 (605)
Q Consensus 302 -----------------------------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 351 (605)
.++..++.+...+.....+..|.+-|..+.+. ...+|+.+.-+|.+.|.+
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 12222333333344444444444444333332 112455555555554432
Q ss_pred ------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007384 352 ------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (605)
Q Consensus 352 ------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 419 (605)
.+..++|.++|.++.+.. +.|...-|.+.-.++..|++.+|..+|.+..+.. .-+..+|..+...|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHH
Confidence 345788999999888765 5677888888889999999999999999998864 23556788999999
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007384 420 ERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (605)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (605)
...|++..|+++|+...+. +-.-+..+.++|-.++
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 9999999999999988765 4455666666666554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=4.9e-13 Score=142.89 Aligned_cols=430 Identities=10% Similarity=0.065 Sum_probs=293.8
Q ss_pred HHHHHhhhHHHHHHHHHHhhCC--CCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007384 67 FFNVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (605)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (605)
-+-...+.|+++.|+..|++.. .|+. .....++..+...|+.++|+..+++.... .+........+...|...|++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 3334556788999999999875 3332 12337888888999999999999998821 133344444456788899999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007384 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (605)
++|+++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999885 345677788889999999999999999999877 566666655544554566676799999999
Q ss_pred hhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HccCCH---HHHH
Q 007384 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGDW---EFAC 289 (605)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~~---~~A~ 289 (605)
... .+.+...+..+..+..+.|-...|.++...-+..- .+....+ ..++..- ....++ +.|+
T Consensus 196 l~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 196 VRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 875 23456677888889999999999988776644221 1111111 1111110 012233 4455
Q ss_pred HHHHHHHHC-CCCCCH-HHH-H---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 290 SVYDDMTKK-GVIPDE-VFL-S---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (605)
Q Consensus 290 ~~~~~m~~~-~~~p~~-~~~-~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (605)
.-++.+... +..|.. ..| . -.+-++...|++.++++.++.+...+.+....+--.+.++|...+++++|..+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 555555542 222322 222 2 2344778899999999999999998876667788899999999999999999999
Q ss_pred HHHhCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-----------CC--CHH-HHHHHHHHHHhcCC
Q 007384 364 HMKSIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL-----------CP--NTI-TYSILLVACERKDD 424 (605)
Q Consensus 364 ~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~~~~~~g~ 424 (605)
++.... ..++......|..+|...+++++|..+++++.+..- .| |-. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 986542 123455567899999999999999999999987311 12 323 34456677889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHhhhhhhhhccCCCc--cchhhhHHHHHHHHHHHHHc----
Q 007384 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRP--QIENKWTSLALMVYREAIVA---- 496 (605)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~m~~~---- 496 (605)
+.+|.+.++++... -.-|..+...+-+.+.. ...+|.++.+.....++... .....++.+++.-|+++...
T Consensus 432 l~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 432 LPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999874 23345555555555543 67778887776666655422 12334444444445444221
Q ss_pred -CCCCcHHHH
Q 007384 497 -GTIPTVEVV 505 (605)
Q Consensus 497 -g~~p~~~~~ 505 (605)
...|++...
T Consensus 511 ~~~~Pe~~~~ 520 (822)
T PRK14574 511 ISRSPEDIPS 520 (822)
T ss_pred HhhCCCchhH
Confidence 346776543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.3e-13 Score=129.12 Aligned_cols=409 Identities=14% Similarity=0.193 Sum_probs=274.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh----CCCCCh----hhHHHHHHHHHhCCCh
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNPTL----STFNMLMSVCASSKDS 108 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~----~~~~~ll~~~~~~~~~ 108 (605)
.+.-..+|+..++-+.+...+|..-.+...+..++.+...+.+|+++|.. +|.-+. ...+.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 46677889999999888887777666666667777778889999998864 343222 2344444457889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------------CHHHHHHHH-----HH
Q 007384 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGALI-----DG 171 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------------~~~~~~~li-----~~ 171 (605)
+.|..-|+...+. .|+..+--.|+-++...|+-++..+.|.+|+.....| +....|.-| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999998875 6777665556666777889999999999998653222 222222222 11
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHhccCCHHHHHHHHHHHhhCcC
Q 007384 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F----------N--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (605)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (605)
+-+.+ +.++++-.-.+++.--+.|+-.. | . .-...+.+.|+++.|.+++.-+..+..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 12222222222222112222110 0 0 112357788888888888876654321
Q ss_pred CCCCCHHHHHHH--HH----------------------------------HHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007384 229 PVDPDHITIGAL--MK----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (605)
Q Consensus 229 ~~~~~~~~~~~l--l~----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (605)
.... ..-+.| +. .....|++++|.+.+++....+..-....|
T Consensus 451 k~~s--aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTAS--AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhhH--HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 1111 111111 00 111347788888888888776532222223
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 007384 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (605)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (605)
| +.-.+-..|+.++|++.|-++...- .-+......+...|....+..+|++++-+.... ++.|+.+.+-|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 3344667889999999887765431 226667777888888889999999988777655 577889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 007384 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLML 431 (605)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~ 431 (605)
|+-.+|.+.+-.--+. ++-|..+..-|..-|....-+++|+..|++..- +.|+..-|..++..|. +.|++.+|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876544332 245677777777788888889999999998755 6899999999887775 58999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (605)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~~~~~ 456 (605)
++...+. +..|......|+..++.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9998764 77788888888887753
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.8e-11 Score=114.27 Aligned_cols=322 Identities=21% Similarity=0.256 Sum_probs=230.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHH-HHHHHHHHHcC-----------
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAM-FEVFHEMVNAG----------- 157 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A-~~~~~~m~~~g----------- 157 (605)
+++=|.|+. ...+|....+.-+++.|...|++.+...-..|+..-+-.+ ++.-| .+.|-.|...|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 445566655 3556788888889999988887777766655555433221 11111 12222222211
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCC
Q 007384 158 --------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (605)
Q Consensus 158 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (605)
.+.+..++.+||.+.|+--..+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|... .
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq--k 268 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ--K 268 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh--h
Confidence 255778999999999999999999999999988777889999999987754332 26788888875 6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----CCC
Q 007384 230 VDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KGV 300 (605)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~ 300 (605)
+.||..|+|+++++.++.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.++..+ +..++.++.. +.+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 88999999999999999998765 45677888999999999999999999998888754 4444444432 222
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 301 IP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (605)
Q Consensus 301 ~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (605)
+| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 22 55677888888999999999998887665431 2232 2335667777888888888999999988766
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (605)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 420 (605)
+-|+..+...++.+..-.|+++-.-+++.+++..|..-+...-.-++..++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 678888888888888888888888888888877664444444333333333
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.7e-11 Score=115.73 Aligned_cols=292 Identities=10% Similarity=0.049 Sum_probs=155.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCC
Q 007384 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGA 212 (605)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~ 212 (605)
.++-...+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+... --|..+|+.++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 44444455566666556666665554444444444444555666666666666665421 0134455554422 2211
Q ss_pred HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007384 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (605)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 292 (605)
.. +..+.+-...-....|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.+.+-|....+...|.+-+
T Consensus 313 sk--Ls~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH--HHHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 11111111111122332 44455566666666666666666666665 445566666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007384 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (605)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (605)
+...+-++. |-..|-.+.++|.-.+...=|+-+|++..+.. +.|...|.+|.++|.+.++.++|++.|.+....| ..
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 666665443 56666666666666666666666666666553 4456666666666666666666666666666544 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 373 TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTIT--YSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
+...+..|...|-+.++.++|.+.|++-.+ .|..-+... ..-|..-+.+.+++++|........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 445666666666666666666666655433 222212111 1112333455566666555444443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=9.3e-12 Score=126.85 Aligned_cols=368 Identities=14% Similarity=0.135 Sum_probs=276.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChhhHHHHHHHHHh
Q 007384 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCAS 104 (605)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~ 104 (605)
-+.-.|.+.-.|++++|..++.++++.+ |.+...+..++.++.++|+.+++...+-.+ .+.|...|-.+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3445566667799999999999999998 788888889999999999999998877543 35677889999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHH
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY----GALIDGCAKAGQVAK 180 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~ 180 (605)
.|++++|.-.|.+.++.. |++...+---...|-+.|+...|..-|.++.+...+.|..-. -..+..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999876 666666666778899999999999999999987422222222 334556667787899
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC-------------------------cCCCCCCH
Q 007384 181 AFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDH 234 (605)
Q Consensus 181 A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------------~~~~~~~~ 234 (605)
|.+.++..... +-..+...++.++..+.+...++.|......+... +.+..++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99998887763 22345567888888999999999988887776541 01122232
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 312 (605)
.++ -++-++......+....+.....+.++.+ +...|.-+..+|.+.|++.+|+.+|..+......-+...|-.+..
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 221 22334455555666666666666666433 467789999999999999999999999988766657889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHH
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITAL 384 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~ 384 (605)
+|...|..++|.+.+..+.... +.+...-.+|...|.+.|+.++|.+.++.+.. .+..|+...--.....+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999875 55666777888899999999999999998652 22334444444455667
Q ss_pred HcCCChhHHHHHHHHH
Q 007384 385 CDGDQLPKTMEVLSDM 400 (605)
Q Consensus 385 ~~~g~~~~A~~~~~~m 400 (605)
.+.|+.++=+.+-..|
T Consensus 537 ~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 537 FQVGKREEFINTASTL 552 (895)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 7777777655444433
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=6.6e-15 Score=141.27 Aligned_cols=258 Identities=18% Similarity=0.170 Sum_probs=64.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007384 100 SVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (605)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (605)
..+.+.|++++|+++++...... .+.|...|..+...+...++.+.|++.++++...+ +-+...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccc
Confidence 33445555555555553322221 12233333334444444555555555555555443 1133344444444 455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007384 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (605)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (605)
++|.+++....+. .++...+..++..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|.+.++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555444333 233444444555555555555555555554432 1223444445555555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007384 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (605)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (605)
+..+.. |.+....+.++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.++|...+++..+.+ +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555543 3344455555555555555555555554444332 1123334444455555555555555555544433 334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHM 365 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (605)
+.+...+.+++.+.|+.++|.++..+.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444455555555555555555544443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=4.2e-10 Score=110.74 Aligned_cols=423 Identities=11% Similarity=0.047 Sum_probs=290.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--------CCChhhHHHHH
Q 007384 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------NPTLSTFNMLM 99 (605)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~ll 99 (605)
++..|-+|.+..-++.|..+++...+.- |.+..++......--.+|+.+...++.++.. .-+...|-.=.
T Consensus 409 s~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 409 SMDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 3445555555555566666655555432 4444444444444444455544444444321 23444455555
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007384 100 SVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (605)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (605)
..|-..|..-.+..+....+..|+.- -..||+.-.+.|.+.+.++-|..+|...++-- +.+...|......--..|.
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCc
Confidence 55666666666777777777666543 24688888889999999999999999888753 4466778888777777889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007384 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (605)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 257 (605)
.++...+|++.... ++-....|-.....+-..|++..|..++.+..+.. +-+...|...+..-....+++.|..+|
T Consensus 566 ~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 566 RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999988876 34556677777777888899999999998887631 335667878888888888999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007384 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (605)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (605)
.+.... .|+..+|..-++..--.++.++|++++++.++.- |+ .-.|..+...+-+.++.+.|.+.|..-.+. ++
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 888764 5677788877777777888999999998887762 33 356777788888889999998888776654 35
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (605)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 416 (605)
-.+..|-.|...-.+.|.+-.|+.++++..-.+ +.+...|-..|..-.+.|+.+.|..+..+.++. ++.+...|.--|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 566778888888888889999999998887665 567888989999999999999998888887664 444556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHhhhhh
Q 007384 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467 (605)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~ 467 (605)
...-+.++-...... +.+..-+|.+...-+-+--.-+++++|..+.+.
T Consensus 795 ~le~~~~rkTks~DA---Lkkce~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDA---LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred HhccCcccchHHHHH---HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666653333332 333333444333222221112367777776543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=4.3e-11 Score=122.14 Aligned_cols=359 Identities=14% Similarity=0.092 Sum_probs=269.8
Q ss_pred hhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007384 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (605)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (605)
..|+.++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..--.+ +.|...|..+.....+.|.++.|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3489999999998864 5577889999999999999999998876555443 66789999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHHhh
Q 007384 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
|.+.++.. +++....---+..|-+.|+...|...|.++.....+.|..-+. ..+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999885 5565566666778999999999999999998874222222222 345567777888999999988876
Q ss_pred CcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHHH
Q 007384 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAINC 278 (605)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~li~~ 278 (605)
. .+-..+...++.++..+.+...++.|.........+.. .++..+ ..+.-+
T Consensus 309 ~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 309 K-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred h-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 3 23344555677888889999999999888877665221 222222 122333
Q ss_pred HHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH
Q 007384 279 CSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (605)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (605)
+......+....+...+.+.+ +.-+...|.-+..++...|++.+|+.+|..+......-+..+|--+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444454555555555555 333566788899999999999999999999998866667889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007384 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVEVG 428 (605)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~g~~~~a 428 (605)
+|.+.|+.+.... +-+...--+|-..+.+.|+.++|++.+..+.. .+..|+..........+...|+.++=
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998763 33456666788889999999999999998642 23455555666666778888888775
Q ss_pred HHHHHHHH
Q 007384 429 LMLLSQAK 436 (605)
Q Consensus 429 ~~~~~~~~ 436 (605)
..+-..|+
T Consensus 546 i~t~~~Lv 553 (895)
T KOG2076|consen 546 INTASTLV 553 (895)
T ss_pred HHHHHHHH
Confidence 55544444
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=4.6e-09 Score=103.64 Aligned_cols=416 Identities=13% Similarity=0.098 Sum_probs=334.2
Q ss_pred chhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCChhhHHHHHH
Q 007384 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMS 100 (605)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~ll~ 100 (605)
.++.++..|..-+.-...++|+-++.+..+.= |....++..+.+ ..-++.|.+++.+ ..+.+...|.+...
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlAlar----LetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLALAR----LETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 45677889999998888888999999888753 555555444433 3445666666654 45778889988887
Q ss_pred HHHhCCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 007384 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (605)
.=-.+|+.+....+..+ +...|+..+...|-.=...|-..|..-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 77888999998888764 4467888899999999999999999999999999998887653 35689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007384 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (605)
.+.++-|..+|...++. ++.+...|......--..|..+....+|++.... ++.....|....+.+-..|++..|.
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998876 3556778888877777789999999999998864 4455667777778888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
.++..+.+.+ +.+...|-+-+.....+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999999887 668899999999999999999999999988775 456666666666666688999999999988876
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007384 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (605)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (605)
++.-...|-.+...+-+.++++.|.+.|..-.+. ++..+..|-.|...--+.|++-+|..+|++.+-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3444567888888999999999999998876554 34456788888888888999999999999987653 446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (605)
Q Consensus 415 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (605)
.+..-.+.|+.+.|..+..++++. +..+-..|..-|-+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999999988864 55566677777766543
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=1.2e-11 Score=125.03 Aligned_cols=289 Identities=11% Similarity=-0.036 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007384 74 QKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (605)
Q Consensus 74 ~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (605)
.|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|.+.+....+....+...........+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4666666666665432 222 2223334456666777777777777665421112223333466666777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hccCCHHHHHHHHHHHhhC
Q 007384 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNAE 226 (605)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~~~~~ 226 (605)
+.+.+.. +.+..++..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..+...
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777664 335566777777777777777777777777766533 222221 111111 2222222223333333322
Q ss_pred cC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 007384 227 VH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (605)
Q Consensus 227 ~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 303 (605)
.+ ..+.+...+..+...+...|+.++|.+++++..+.. +.+... ...........++.+.+.+.++...+..+. |
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 10 111356666677777777788888888777777754 222211 111222223456677777777776665332 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 304 E--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 304 ~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 55667777788888888888888854443345777777788888888888888888887754
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.1e-10 Score=108.49 Aligned_cols=330 Identities=13% Similarity=0.026 Sum_probs=235.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHH
Q 007384 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH--TYGA 167 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ 167 (605)
.|...+-.....+.+.|..+.|...|....-. .| ..|.+-+....-..+.+.+..+...+ +.|.. .=--
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P---~~W~AWleL~~lit~~e~~~~l~~~l-----~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YP---WFWSAWLELSELITDIEILSILVVGL-----PSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CC---cchHHHHHHHHhhchHHHHHHHHhcC-----cccchHHHHHH
Confidence 34433333344455666777777777666532 12 23333333322222333322221111 21111 1112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc
Q 007384 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (605)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (605)
+..+|-...+.+++++-.......|++-+...-+....+.-...++++|+.+|+++.+..+---.|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 33455566688888888888888887666665566666677789999999999999876322224677887776433222
Q ss_pred CChH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 248 GQVD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (605)
Q Consensus 248 g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (605)
..+. .|..++ +.+ +--+.|...+.+.|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-
T Consensus 313 skLs~LA~~v~----~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS----NID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH----Hhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 2221 122222 111 233478888899999999999999999999998765 567899999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007384 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (605)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (605)
++...+-+ +.|-..|-.|..+|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999986 7789999999999999999999999999998864 5678999999999999999999999999998765 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 407 PNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 407 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.+...+..|...+-+.++.++|.+.+++.++
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4668899999999999999999999988776
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.4e-14 Score=139.07 Aligned_cols=259 Identities=17% Similarity=0.150 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 007384 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSK 106 (605)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 106 (605)
..-+.+.+.|++++|++++++.......|.+..++..++..+...++.+.|+..++++.. .++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 334556678888888888865443332256666666666677777778888887777652 234455555555 5777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (605)
++++|.+++....+. .++...+...+..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 778887777666544 3455666677777777788888887777766432 2456667777777777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007384 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (605)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (605)
++..+.. +-|....+.++..+...|+.+++.+++....... +.|...+..+..+|...|+.++|...|++..+.+
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 7777663 3346667777777777787777777776665431 3344456667777777778888888887777654
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007384 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (605)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (605)
+.|+.+...+...+.+.|+.++|.++..+..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5567777777777777777777777766543
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.1e-11 Score=124.51 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=204.5
Q ss_pred hHHHHHHHHHHhhCCCC--Chhh-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHH
Q 007384 74 QKAIKEAFRFFKLVPNP--TLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMFE 148 (605)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~ 148 (605)
.|+++.|.+.+.+.+.. ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47788888888766532 2222 322233447888899999999888764 45543332 33667888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHH
Q 007384 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLA 221 (605)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~ 221 (605)
.++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998888775 456778888888899999999999999888877543222 234444555555556667777777
Q ss_pred HHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 007384 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (605)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (605)
.+... .+.+......+...+...|+.++|.+++++..+. +++... .++.+.+..++.+++++..+...+..+.
T Consensus 254 ~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66542 3456667778888889999999999999888774 444422 2334445668889999999888877554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+.+++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677888888899999999999999988876 47888888888999999999999998887754
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=6.3e-10 Score=105.53 Aligned_cols=415 Identities=13% Similarity=0.093 Sum_probs=290.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHH
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~ 113 (605)
.++++..|+++|+..+..+ ..+..+....+..-.+++.++.|..+++... +.-...|-..+-.=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4778889999999999876 4556666667777778889999999998753 2222344444444456799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 007384 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (605)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (605)
+|+.-.+. .|+...|++.|+.=.+.+.++.|..+++...-. .|++.+|-.-...=.++|....|..+|....+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988864 899999999999999999999999999998765 799999999999999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC--HHHHHHHHHHHHhcCChHHHHHH--------HHHHH
Q 007384 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (605)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~--------~~~~~ 261 (605)
- .-+...+.+...-=.++..++.|.-+|.-.... ++.+ ...|......--+-|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 112223333333334556778888888776653 2322 33444444433445554433332 34455
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHH
Q 007384 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALI----D-FA---GHAGKVEAAFEILQEAK 331 (605)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li----~-~~---~~~g~~~~a~~~~~~~~ 331 (605)
+.+ +.|-.+|--.+..-...|+.+...++|++.... ++|-. ..|...| + ++ ....+.+.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 554 667778888888888889999999999888765 33321 1122111 1 11 24678888888988887
Q ss_pred HCCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007384 332 NQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (605)
Q Consensus 332 ~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (605)
+. ++-...|+.-+=-+| .++.++..|.+++.... |..|...++-..|..-.+.++++....++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 73 344455555544444 46788888988888766 346888888888888888889999999999988753 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH--hhHHHHHhhhh
Q 007384 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCS--RRYEKARTLNE 466 (605)
Q Consensus 408 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~--~~~~~a~~~~~ 466 (605)
|..+|......-...|+.+.|+.+|+.++.. .++.....|.+.|+-=- ..++++..+.+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 6788888888888889999999999888865 34444556666665311 13455554433
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.7e-11 Score=123.27 Aligned_cols=282 Identities=13% Similarity=0.057 Sum_probs=125.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (605)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666555544332101 1222222233335566666666666666544 33332221 2244555566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 007384 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (605)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~ 256 (605)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665553 3345555555666666666666666666655431 111111 1112222222222233333333
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007384 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (605)
++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 33333221 334444444555555555555555555444442 1222111 1112222344444444444444432 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007384 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (605)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (605)
.|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444445555555544444442 34444444444444444444444444444
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.5e-10 Score=104.58 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=134.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCH
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (605)
+++.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..+.|++++..+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467888888888887643 445566677778888888888888888887763 332 2344555667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 007384 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAR 254 (605)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~ 254 (605)
+.|..+|..+.+.| .--......|+..|-...++++|+.+-+++...+ -.+. ...|.-+...+....+++.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 88888877777654 2334556667777777777777777776665421 1111 112333444444455666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
.++.+..+.+ +.+..+--.+.+.+...|++..|.+.++...+.+..--..+...+..+|.+.|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666554 33333344455556666666666666666666544333445555555666666666666666655554
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=4.5e-11 Score=120.82 Aligned_cols=287 Identities=11% Similarity=-0.009 Sum_probs=144.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHH
Q 007384 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (605)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (605)
...|+++.|.+.+....+. .|+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 4567777777777766654 333 333444456666777777777777776654 2333 23333466677777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHH-HHHHH---HhcCChHHHHH
Q 007384 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKAC---ANAGQVDRARE 255 (605)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-ll~~~---~~~g~~~~A~~ 255 (605)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.. .. +...+.. -..++ ...+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LF-DDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777764 3455666777777777777777777777776531 11 2111111 11111 11122222222
Q ss_pred HHHHHHhcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 007384 256 VYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~ 330 (605)
.+..+.+.. .+.++..+..+...+...|+.++|.+++++..+.........+. ++. .....++.+.+.+.++..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 333333221 11355666666666666666666666666666543321111000 111 112223444444444444
Q ss_pred HHCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007384 331 KNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (605)
Q Consensus 331 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (605)
.+.. +.|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4332 2222 333344444445555555555544222211234444444444444445555555444444
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.2e-10 Score=109.46 Aligned_cols=419 Identities=16% Similarity=0.186 Sum_probs=267.0
Q ss_pred hcCCHHHHHHHHHHHHHc-----------CCC-----CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC----CChhh-H
Q 007384 37 RQGRISECIDLLEDMERK-----------GLL-----DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST-F 95 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~-----------~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~ 95 (605)
.+|++.+|++--.+.-++ +.+ ...-.+...++.-+..+....+|+..|+-+.. ||.-. -
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 578888887655443221 211 11122233444445555667788888876542 22211 1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 96 ~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
-.+...+.+...+.+|+..++..+..-...+- ...+.+.-.+.+.|++++|+..|+...+. .||..+--.|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 22445678888999999999887764212222 23444444567889999999999998876 6888877777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHHH-----HHhccCC--HHHHHHHHHHHhhCcCCCCC
Q 007384 172 CAKAGQVAKAFGAYGIMRSKNVK------------PDRVVFNALIT-----ACGQSGA--VDRAFDVLAEMNAEVHPVDP 232 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~li~-----~~~~~g~--~~~a~~~~~~~~~~~~~~~~ 232 (605)
+..-|+-++..+.|.+|+..... |+....+.-|. -.-+.+. -++++-.-..+.. +-+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccccc
Confidence 77789999999999999765322 33333333221 1111111 1122211111111 11223
Q ss_pred CHHH-------------H--------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------------
Q 007384 233 DHIT-------------I--------GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC------------- 278 (605)
Q Consensus 233 ~~~~-------------~--------~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~------------- 278 (605)
|-.. + ..-.--+.+.|+++.|.++++-..+.+-+.-...-+.|-..
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 2110 0 00122467999999999999887765432211111111110
Q ss_pred -----------------------HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007384 279 -----------------------CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (605)
Q Consensus 279 -----------------------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (605)
-..+|++++|.+.|++.+.....-....|+ +.-.+-..|++++|++.|-.+..- +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 112478899999999888764331222222 333566789999999988776543 2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (605)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (605)
..+..+...+...|.-..+..+|++++.+.... ++.|+....-|...|-+.|+-.+|.+..-+--+. ++-|..|..-|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 346778888888999999999999998877654 3556788889999999999999998886554332 44577888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---hHHHHHhhh
Q 007384 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---RYEKARTLN 465 (605)
Q Consensus 416 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~a~~~~ 465 (605)
..-|....-+++++.+|+++.- +.|+..-|..+|..|.| +|.+|-.+.
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8888888889999999998875 78999999999988866 455555443
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.9e-11 Score=120.97 Aligned_cols=283 Identities=13% Similarity=0.083 Sum_probs=189.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007384 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (605)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (605)
+..+|...|..+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777777775443 22234556667778888888888888888877652 112445566555333221 11111
Q ss_pred H-HHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 220 L-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
+ +++... -+-...+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|..-|+..+..
T Consensus 409 Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 1 122211 12334578888888888888888888888887765 446677888877788888888888888777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007384 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (605)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (605)
... +-..|-.+...|.+.++++.|+-.|+.+.+-+ +.+.+....+...+-+.|+.++|++++++..... +.|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 332 33455556667788888888888888887776 4556666777777888888888888888877654 34455545
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
..+..+...+++++|+..|+++++ +.|+ ...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 556667777888888888888877 3564 455667777888888888888777777763
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.6e-11 Score=118.93 Aligned_cols=284 Identities=11% Similarity=0.030 Sum_probs=211.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFG 183 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (605)
-+..+|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+.. ...+..+|.+.+-.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888885543 34455777788889999999999999999888752 11256677777654432 12222
Q ss_pred HH-HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007384 184 AY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIH 261 (605)
Q Consensus 184 ~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (605)
.+ +.+.+.. +-.+.+|.++.+.|.-.++.+.|++.|++..+- .| ..++|+.+..-+.....+|.|...|+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22 2222221 445789999999999999999999999988753 45 67788888888888888999999998887
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH
Q 007384 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (605)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (605)
..+ +.+-.+|.-+.-.|.+.++++.|+-.|++..+.++. +.+....+...+-+.|+.++|+++++++...+ +-|+..
T Consensus 483 ~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 483 GVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred cCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 665 333456666778889999999999999988887765 67777888888889999999999999988876 334444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007384 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (605)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (605)
-..-+..+...+++++|...++++.+.- +.+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4455666777889999999999988752 334667777888899999999999988888764
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=2e-08 Score=95.60 Aligned_cols=409 Identities=10% Similarity=0.060 Sum_probs=298.0
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHHHHH
Q 007384 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (605)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~ 100 (605)
.++..|-.++ ++.++..|+.+++.....- |-...+..-...+--..|++..|.++|+.-. +|+...|++.|+
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK 182 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3455665555 8999999999999988753 5444455444445556788999999998743 799999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCH
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCAKAGQV 178 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~ 178 (605)
.=.+-+..+.|..+++...- +.|++.+|-.....=-++|....|.++|....+. |- .-+...+.+....=.++..+
T Consensus 183 fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999885 4799999999999999999999999999988764 10 11233444444444567788
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCH---HHHHHH-----HHHHhhCcCCCCCCHHHHHHHHHHHHhcC
Q 007384 179 AKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAV---DRAFDV-----LAEMNAEVHPVDPDHITIGALMKACANAG 248 (605)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~---~~a~~~-----~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (605)
+.|.-+|+-.+.. ++.+ ...|.....-=-+-|+. +++.-- ++.+... -+-|-.+|--.++.-...|
T Consensus 261 ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 261 ERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCCCchHHHHHHHHHHhcC
Confidence 9999999888765 2222 33444444333334553 333321 3444432 2456668888888888899
Q ss_pred ChHHHHHHHHHHHhcCCCCCH--HHHHHHHH--------HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 007384 249 QVDRAREVYKMIHKYNIKGTP--EVYTIAIN--------CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG--- 315 (605)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~--~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--- 315 (605)
+.+...++|++.... ++|-. ..|.-.|- .-....+.+.+.++|+..++. ++...+||.-+--.|+
T Consensus 337 ~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 999999999999875 35531 12222221 123568899999999998883 3335667766544444
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007384 316 -HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (605)
Q Consensus 316 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (605)
+..++..|.+++.... |.-|-..+|-..|..-.+.++++.+..++++..+.+ +-|..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 5778999999998776 446788899999999999999999999999999876 456788988888888899999999
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007384 395 EVLSDMKSLGL-CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (605)
Q Consensus 395 ~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (605)
.+|.-.+.+.. .-....|.+.|.--...|.++.|+.+++++++. .+...+|-++
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisF 546 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISF 546 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhH
Confidence 99999887421 112455667777777899999999999999984 3444455443
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=6.5e-10 Score=100.55 Aligned_cols=288 Identities=13% Similarity=0.067 Sum_probs=200.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C--HHHHHHHHHHHhccCCHHHH
Q 007384 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-D--RVVFNALITACGQSGAVDRA 216 (605)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~--~~~~~~li~~~~~~g~~~~a 216 (605)
..+.++|.++|-+|.+.. +-+..+.-+|.+.|-..|..+.|+++.+.+.++.--+ + ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457889999999998753 3355567788888999999999999998887652111 1 12334566667888889999
Q ss_pred HHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHH
Q 007384 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWEFACSVY 292 (605)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 292 (605)
+++|..+..++ +--......|+..|-...+|++|+++-+++.+.+-.+. ...|.-|...+....+++.|..++
T Consensus 127 E~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 127 EDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99998887532 22234566788889999999999998888877764332 234556666666778888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007384 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (605)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (605)
.+..+.+.+ ++..--.+.+.....|++..|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 888776543 3444445566777888888888888888888766666778888888888888888888888887753 3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 007384 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAK 436 (605)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~ 436 (605)
....-..+...-....-.+.|...+.+-... +|+...+..++..-.. .|...+....++.|.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3334444444444455566666666665543 6888888888876543 233444444444444
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=9.6e-10 Score=102.63 Aligned_cols=284 Identities=15% Similarity=0.118 Sum_probs=148.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (605)
.|++.+|+.+...-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777766665555 2234445555566666677777777776666542244555555666666666777777666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHH
Q 007384 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (605)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (605)
.+++.+.+ +.+........++|.+.|++.+...++..+.+.+ .-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 66666654 4455666666677777777777777766665542 2222 123344444333333333333344
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007384 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (605)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (605)
+...+. .+.++..-.+++.-+.+.|+.++|.++..+..+++..|.. .. .-.+.+.++...-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 443332 2333444445555555555555555555555555443331 11 112334444444444444433332 23
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+-+.++|.+.|+..+|.+..++.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3344555555555555555555555544433 455555555555555555555555555543
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.2e-09 Score=104.20 Aligned_cols=387 Identities=11% Similarity=0.067 Sum_probs=241.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChH
Q 007384 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 109 (605)
|.+.++|++++|++.+.+.+... |+.+.++......+.+.|++++..+...+..+-+ +..+..-.+++-+.|+++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 44558999999999999999876 6667788888888888999999888877655333 334555556677788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHh------------
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------ 174 (605)
+|+.=..-..-.+--.|..+--.+=+.+- ..|.+...+-.+ .+ +-|+....++..+.+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77643322221111111111111111111 111211222111 11 22444333333332211
Q ss_pred -------------cC---CHHHHHHHHHHHHhC-CCCC-----CHH----HHHHHHH--HHhccCCHHHHHHHHHHHhhC
Q 007384 175 -------------AG---QVAKAFGAYGIMRSK-NVKP-----DRV----VFNALIT--ACGQSGAVDRAFDVLAEMNAE 226 (605)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~-g~~p-----~~~----~~~~li~--~~~~~g~~~~a~~~~~~~~~~ 226 (605)
.+ .+..|...+.+-... -..+ |.. .-..+++ -+.-.|+...|.+-|+.....
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222111100 0001 111 1111111 233457777888888887753
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 007384 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (605)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 306 (605)
. +.+...|.-+..+|....+.++..+.|.+..+.+ +.++.+|..-...+.-.+++++|..=|++.....+. +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 2 2222236667778889999999999999998887 667788888888888888999999999988877544 5566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHH--H
Q 007384 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-------VST--M 377 (605)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~~--~ 377 (605)
|..+.-+..+.+++++++..|++.+++ ++..+.+|+-....+...++++.|.+.|+...+. .|+ ... -
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh
Confidence 666666667788999999999988876 4667888998999999999999999999988764 232 111 1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 378 NALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
-+++- +.-.+++..|+.++++..+. .| ....|.+|...-.+.|+.++|+++|++...
T Consensus 508 Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111 11237888999999988873 45 456788888888999999999999988764
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.4e-10 Score=108.48 Aligned_cols=284 Identities=10% Similarity=0.035 Sum_probs=230.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
..+.........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++... .+....+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcchh
Confidence 4566666777777888999999999999998875 667777777788999999988888887777763 355677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 007384 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGH 316 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~ 316 (605)
++..-|...|...+|++.|.+....+ +.-...|-.+...|.-.|..+.|...+...-+. |.. ..+--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHH
Confidence 99988999999999999999988776 344578999999999999999999998876553 321 112333446788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHcCCCh
Q 007384 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K--LKPTVSTMNALITALCDGDQL 390 (605)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~~~~~~~~~li~~~~~~g~~ 390 (605)
.+..+.|.++|.+..... |.|+.+.+-+.-...+.+.+.+|...|+..... + ...-..+++.|.++|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999999988875 678889999988888899999999999987631 1 011345688899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (605)
++|+..+++.+.. .+-|..|+.++.-.+...|+++.|...|.+.+- +.|+..+.+.++..+
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999998874 245788999999999999999999999999886 889998888887654
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=3.9e-09 Score=98.63 Aligned_cols=287 Identities=11% Similarity=0.041 Sum_probs=222.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007384 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (605)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (605)
.|++..|+++..+-.+.+ +-....|..-..+--+.|+.+.+-+++.+.-+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 589999999998877766 3345566666777788999999999999988763355666777777888999999999998
Q ss_pred HHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHH
Q 007384 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (605)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 292 (605)
++++.... +....+......+|.+.|++.....++..+.+.+.-.+. .+|+.++.-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88887642 445677888889999999999999999999998865553 35777777666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007384 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (605)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (605)
+...++ .+-++..-.+++.-+.++|+.++|.++..+..+++..++. ...-.+.+-++.+.-.+..++-.+.. +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 666544 3336667778888889999999999999999888766651 12224556777777666666554432 33
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|.-+..++.+.|+..+|.++.++....
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 457888899999999999999999998777 4799999999999999999999999999887643
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.5e-09 Score=103.98 Aligned_cols=288 Identities=14% Similarity=0.059 Sum_probs=222.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007384 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (605)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (605)
+...+........+-+-..+++.+..++++.+.+.. +++...+..-|.++...|+..+-+.+=.+|.+.- +..+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 345566666777777888899999999999988765 5677777777778888898888777777777663 55678899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007384 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (605)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (605)
++.--|...|...+|.+.|.....-...+ ...|......|+-.|..++|...+....+.= +.....+--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 88888888899999999998876433223 3367778888999999999999887776541 2221222223345778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhHHHHHHHHHHhcCCH
Q 007384 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNW 355 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~ 355 (605)
.++.+-|.+.|.+.....+. |+...+-+.-.....+.+.+|..+|+..... + ..--..+++.|..+|.+++.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 89999999999888766443 7777777777777788899999999887632 1 011345688999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007384 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (605)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 419 (605)
++|+..|++..... +.+..++.++.-.|...|+++.|++.|.+.+. +.|+..+.+.++..+
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999999998764 67889999999999999999999999999876 689998888877643
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=9.8e-10 Score=115.49 Aligned_cols=249 Identities=12% Similarity=-0.007 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHhhCC--CC-ChhhHHHHHHHHH---------hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007384 74 QKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (605)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (605)
.++.++|+.+|++.. .| +...|..+..++. ..+++++|...+++..+.+ +.+..++..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 466889999998764 23 4455655554433 2345789999999999875 667888888988999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007384 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (605)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (605)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+... .+...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999998875 44577888899999999999999999999988742 233333444555667899999999999
Q ss_pred HHhhCcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-C
Q 007384 222 EMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G 299 (605)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~ 299 (605)
+..... +| +...+..+..++...|+.++|...+.++.... +.+....+.+...|+..| +.|...++.+.+. .
T Consensus 431 ~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 887531 23 34456677788889999999999998876553 334556667777778777 4777777776542 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
..|....+. -..+.-.|+.+.+... +++.+.+
T Consensus 505 ~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLL--PLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHH--HHHHHHHhhhHHHHHH-HHhhccc
Confidence 122222233 3334456666666655 7777664
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=8.3e-08 Score=94.84 Aligned_cols=412 Identities=16% Similarity=0.192 Sum_probs=217.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 007384 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113 (605)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 113 (605)
.++++|++..-+..|+..++.-.+.....++...+++..+.+-++-+.++|++-..-++..-+.-|..+++.++.++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 45588889888888888776543333334444445555554445555555544332233333444444455555555554
Q ss_pred HHHHHHHc----------------------------------------CC--CCC--HHHHHHHHHHHHhcCChhHHHHH
Q 007384 114 VLRLVQEA----------------------------------------GL--KAD--CKLYTTLITTCAKSGKVDAMFEV 149 (605)
Q Consensus 114 ~~~~m~~~----------------------------------------g~--~~~--~~~~~~li~~~~~~g~~~~A~~~ 149 (605)
.+...+.. |+ -+| ...|++|.+-|.+.|.++.|.++
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDv 270 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDV 270 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44433211 11 122 23456666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhCC-----------CCCC
Q 007384 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQ----------------------VAKAFGAYGIMRSKN-----------VKPD 196 (605)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~~g-----------~~p~ 196 (605)
|++.++. ..++.-|+.+.++|++... ++-.+..|+.+...+ -+.+
T Consensus 271 yeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 271 YEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 6665544 3344445555555553211 111222222222211 0111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HH
Q 007384 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PE 270 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~ 270 (605)
+..|..-+. +..|+..+-...+.+......+. -.-...|..+.+.|-+.|+++.|..+|++..+...+.- ..
T Consensus 349 V~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 349 VEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 222222111 12234444555555554321110 01134577777888888888888888888777554322 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
+|..-...-.++.+++.|+++.+......-. | +...|+..++.--..|-++....+++.+...
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666666667777888888877765432111 1 1233444455555567777777777777776
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCH
Q 007384 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNT 409 (605)
Q Consensus 334 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 409 (605)
.+.. +...-.....+-....++++.+++++-...-..|++ ..|+..+.-+.+ .-.++.|..+|++.++ |++|..
T Consensus 507 riaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 507 RIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred hcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 5322 222222222344556677787777776654445554 467766655443 2357888888888887 666653
Q ss_pred HH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 007384 410 IT--YSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (605)
Q Consensus 410 ~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~ 452 (605)
.- |......=-..|....|+.+++++... +.+. ...||..|.
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 32 222222233467777788888776542 3332 234555543
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=5e-10 Score=113.94 Aligned_cols=86 Identities=21% Similarity=0.208 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (605)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (605)
.|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-+..+...|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 478888998888888889999999999999999988888877777755 77788888888888888999998888887
Q ss_pred HHHHHcCCC
Q 007384 381 ITALCDGDQ 389 (605)
Q Consensus 381 i~~~~~~g~ 389 (605)
+..+.++|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 777777655
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.9e-09 Score=100.55 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (605)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 313 (605)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3455556666667777777777777666554 444566666667777777777777777766665433 44556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007384 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (605)
+...|++++|...+....+... +.....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665421 2234456666777777788888888877776653 2345667777777777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
|...+++..+. .+.+...+..+...+...|+.+++..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888777664 233555666666777777888887777766654
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.3e-09 Score=100.02 Aligned_cols=197 Identities=16% Similarity=0.107 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007384 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (605)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (605)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555544432 2234444445555555555555555555544432 22334444444445
Q ss_pred hccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHH
Q 007384 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (605)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (605)
...|++++|.+.+.+..... ........+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555544310 111122233334444444455555555554444432 2233344444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (605)
Q Consensus 288 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (605)
|...+++..+.. ..+...+..+...+...|+.+.|..+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444331 11233333333444444444444444433
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=3.8e-09 Score=111.06 Aligned_cols=250 Identities=10% Similarity=0.036 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHHHHhc-----cCCHHHHHHHHHHHhhCcCCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHH
Q 007384 194 KPDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYK 258 (605)
Q Consensus 194 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~A~~~~~ 258 (605)
..+...|...+++... .++.++|.++|++..+. .|+ ...|..+..+|. ..+++++|...++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 3455555555554321 23467888888887754 343 344555544443 2234778888888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007384 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (605)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (605)
+..+.+ +.+..++..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+.. +
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 888876 667778888888888888888888888888877543 5566777777888888888888888888877522 3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHH
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLV 417 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~ 417 (605)
...+..++..+...|++++|...+++..+...+.+...+..+..++...|+.++|...+.++... .|+..+.. .+..
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~ 483 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYA 483 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHH
Confidence 33333444456667888888888888765432223555677777788888888888888886553 45544433 4444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007384 418 ACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (605)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (605)
.+...| +.+...++.+.+. ...+.......++..+
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 556666 4677666666543 3334333444555444
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.5e-12 Score=84.82 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007384 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (605)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 421 (605)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777754
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-07 Score=88.72 Aligned_cols=398 Identities=12% Similarity=0.046 Sum_probs=175.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC
Q 007384 28 QLHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (605)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (605)
-.+.++...+.+.+..|.+.|....+... .+.+.......+..+...++-++|+.....+|+
T Consensus 46 l~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~ 125 (564)
T KOG1174|consen 46 LLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPP 125 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCc
Confidence 44566666788888899999988765421 122333333444555566777888888888775
Q ss_pred CChh-hHHHHHHHHHhCC-ChHHHHHHHHHH--------------HHcC---------------CCCCHHHHHHHHHHHH
Q 007384 90 PTLS-TFNMLMSVCASSK-DSEGAFQVLRLV--------------QEAG---------------LKADCKLYTTLITTCA 138 (605)
Q Consensus 90 ~~~~-~~~~ll~~~~~~~-~~~~A~~~~~~m--------------~~~g---------------~~~~~~~~~~li~~~~ 138 (605)
.-.. --|.++..+-+.| +-.++.--+... .+.+ ++|...+....+.+++
T Consensus 126 t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~A 205 (564)
T KOG1174|consen 126 TLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALA 205 (564)
T ss_pred cccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHH
Confidence 3332 2333433333332 211211111111 1111 1111122222222222
Q ss_pred hc--CChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHH
Q 007384 139 KS--GKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQSGAVD 214 (605)
Q Consensus 139 ~~--g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~ 214 (605)
.+ ++...|...+-.+.... ++-|+.....+...+...|+.++|...|++.... .|+..+ .....-.+.+.|+++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHh
Confidence 22 22222333222222211 2334445555555555555555555555555433 121111 111112233444554
Q ss_pred HHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007384 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (605)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (605)
....+...+.... .-....|..-........++..|+.+-++..+.+ +.+...+-.-...+...|++++|.-.|+.
T Consensus 284 ~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 284 QDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred hHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHH
Confidence 4444444443211 0111122222222233444555555555554443 23333444444445555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCC
Q 007384 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKLKP 372 (605)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~ 372 (605)
.+...+. +...|..++..|...|++.+|.-+-+...+. ++.+..+...+. ..+. ...--++|.++++.-... .|
T Consensus 360 Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P 435 (564)
T KOG1174|consen 360 AQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NP 435 (564)
T ss_pred HHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CC
Confidence 4443211 4455555555555555555555444443332 122333333221 1111 111224455555544432 33
Q ss_pred C-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 373 T-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 373 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+ ....+.+...+...|..++++.++++... ..||....+.|...+...+.++++...|..+..
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3 23444444555555555555555555443 245555555555555555555555555555554
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.5e-11 Score=82.68 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007384 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (605)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (605)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666553
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=2.9e-10 Score=115.64 Aligned_cols=274 Identities=15% Similarity=0.130 Sum_probs=187.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (605)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (605)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45666777888888888888888888888888887 8888877777777888888888888888877665
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hcCCCCCHHH
Q 007384 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH-KYNIKGTPEV 271 (605)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 271 (605)
.|...+|..|..+|...||+.. |+...+ -.-.+...+...|--.....++..+. ..+.-|+.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-- 142 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-- 142 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH--
Confidence 6677888888888888888765 222211 11123333444444444444443321 11222332
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (605)
...+......|.++.+++++..+....-. |..+ +++-+..... ...++........-.|++.+|.+++++-.
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRAL 215 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 23334455567777777777666543211 1111 2443333322 22333333322222589999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007384 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (605)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 424 (605)
..|+.+.|..++..|.+.|++.+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+...+..|...|.
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999999999998888888777 78888888999999999999999999988888777544
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.5e-06 Score=84.01 Aligned_cols=419 Identities=15% Similarity=0.121 Sum_probs=241.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHH--HHHHH--
Q 007384 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC-- 102 (605)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--ll~~~-- 102 (605)
.-....|...++|++++|.+...+++..+ |++......-.-...+.+.+++|+++.+.-... .+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 34455677778999999999999999876 555444333333455678899999776653311 11222 23444
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 007384 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKA 181 (605)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 181 (605)
.+.+..++|+..++... +.|..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++..-. +
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------A 158 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------h
Confidence 46789999999887322 2344466677788889999999999999998764221 1111111111110 1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---HHHhccCCHHHHHHHHHHHhh--------CcCC---CCCCH-HHHHHHHHHHHh
Q 007384 182 FGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDH-ITIGALMKACAN 246 (605)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~~~~--------~~~~---~~~~~-~~~~~ll~~~~~ 246 (605)
... +.+......| ..+|..+. ..+...|++.+|+++++.... ...+ +..+. ..-..+.-.+-.
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 0122222222 23444333 344566788888888776611 1000 00011 112234445667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcc----------------------------------------
Q 007384 247 AGQVDRAREVYKMIHKYNIKGTP----EVYTIAINCCSQT---------------------------------------- 282 (605)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~---------------------------------------- 282 (605)
.|+.++|..++..+.+.+ ++|. ..-|.|+..-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887777765 2332 1112222111110
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 007384 283 -----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (605)
Q Consensus 283 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (605)
+..+.+.++.... .+..|. ..+..++..+.+ ......+..++....+....-...+.-..+......|++
T Consensus 316 L~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 1111111111111 112233 334444443322 224667777777766654333456667778888999999
Q ss_pred HHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHH----HHHHHh
Q 007384 356 QKALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSIL----LVACER 421 (605)
Q Consensus 356 ~~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l----l~~~~~ 421 (605)
+.|.+++. .+.+.+..|- +..++...+.+.+..+.|..++.+.... .-.+......++ ...-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 6666554454 4456677778888777787777776531 112222333333 334456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hHHHHHhhhhhhh
Q 007384 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVL 469 (605)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~ 469 (605)
.|+-++|..+++++.+. ..+|..+...++.+|++ .-++|..+...+.
T Consensus 471 ~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred cCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcCC
Confidence 79999999999999985 35788889999999988 6677777766553
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=4.3e-09 Score=95.34 Aligned_cols=232 Identities=15% Similarity=-0.003 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007384 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (605)
..-+.+.++|.+.|...+|.+.|+.-... .|-..||..|-+.|.+..++..|+.++..-.+. ++.+.....-+..
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 33355667777777777777777766543 344446666777777777777777777776654 2444444455666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 007384 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (605)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (605)
.+-..++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|. .++..|+.+.-+|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 667777777777777777665433 555666666667777777777777777777773 456677777777777777777
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 358 ALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (605)
Q Consensus 358 A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 435 (605)
++.-|++....--.|+ ...|-.+.......|++.-|.+.|+-...++ .-....++.|.-.-.+.|++++|+.++..+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 7777777665432343 3456667666777777777777777766542 224566777777777777777777777776
Q ss_pred HH
Q 007384 436 KE 437 (605)
Q Consensus 436 ~~ 437 (605)
..
T Consensus 456 ~s 457 (478)
T KOG1129|consen 456 KS 457 (478)
T ss_pred hh
Confidence 65
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=1.5e-06 Score=86.44 Aligned_cols=388 Identities=13% Similarity=0.120 Sum_probs=183.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHH
Q 007384 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (605)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~ 114 (605)
.+++...+.+.+.+++.. |......++.+-.....|+.++|........ ..+.+.|..+.-.+-...++++|...
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 345555555555555532 2222222222222333344555555544332 23444555555555555556666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 007384 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-V 193 (605)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 193 (605)
|+.....+ +.|...|.-+.-.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.+...+.. -
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65555543 3444455444444445555555554444444432 2233445555555555555555555555554432 1
Q ss_pred CCCHHHHHHHH------HHHhccCCHHHHHHHHHHHhhCcCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007384 194 KPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIK 266 (605)
Q Consensus 194 ~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (605)
.|+...+.... ....+.|..++|.+.+..-... ..|... --.-...+.+.+++++|..++..+..++ +
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-P 250 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-P 250 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-c
Confidence 23333332211 1233445555555544433211 112111 1222344455555555555555555543 2
Q ss_pred CCHHHHHHHHHHHHccCC-----------------------------------HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007384 267 GTPEVYTIAINCCSQTGD-----------------------------------WEFACSVYDDMTKKGVIPDEVFLSALI 311 (605)
Q Consensus 267 ~~~~~~~~li~~~~~~g~-----------------------------------~~~A~~~~~~m~~~~~~p~~~~~~~li 311 (605)
.+..-|..+..++.+-.+ .+..-+.+..+.+.|+.+ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 222222222222221111 222333344444555432 233333
Q ss_pred HHHHhcCCHHHHHHHHHHHH----HCC----------CCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 007384 312 DFAGHAGKVEAAFEILQEAK----NQG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV- 374 (605)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~- 374 (605)
+.|-.....+-..++.-.+. ..| -+|.... +..++..|-+.|+++.|....+...++ .|+.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 33322221111111111111 110 1344333 345666777788888888888877765 4553
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007384 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (605)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 440 (605)
..|..-...+...|.+++|...+++..+-+ .||...-+--..-..+..+.++|.++.....+.|.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 345555566777888888888887777643 34444443445555677778888888777776654
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=2.3e-07 Score=94.47 Aligned_cols=290 Identities=13% Similarity=0.123 Sum_probs=157.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-----cC
Q 007384 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-----SG 211 (605)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~g 211 (605)
+...|++++|++.+..-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..- ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34555555555555443322 11223334444555555566666666666555553 2222223333333311 12
Q ss_pred CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007384 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (605)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (605)
+.+...++++++... -|.......+.-.+..-..+ ..+...+..+..+|+| .+++.+-..|....+..-..+
T Consensus 92 ~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 92 DVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 345555555555432 12111111111111111111 2334444555566653 455666666665555554555
Q ss_pred HHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 007384 291 VYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (605)
Q Consensus 291 ~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (605)
++...... + -.|.. .++.-+...|...|++++|+++++..+.+. +-.+..|..-...|-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 55444321 0 12333 234555667778888888888888888775 3346677777788888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHH
Q 007384 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERKDDVE 426 (605)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~--~~ll~~~~~~g~~~ 426 (605)
+.+|.+.++...+.. .-|...-+-.+..+.++|+.++|.+++....+.+..|-.. .| .-...+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888888887654 3455555666777778888888888887776655433221 11 23346788888888
Q ss_pred HHHHHHHHHHH
Q 007384 427 VGLMLLSQAKE 437 (605)
Q Consensus 427 ~a~~~~~~~~~ 437 (605)
.|+.-|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777666654
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=7.2e-06 Score=81.58 Aligned_cols=465 Identities=11% Similarity=0.135 Sum_probs=294.1
Q ss_pred CCCCCCCCCCCCccCchhhhHHHHHHHH--hcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHH--------------
Q 007384 9 LQFPYPNGKHANYAHDVSEQLHSYNRLI--RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVC-------------- 71 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------- 71 (605)
+-.+|..-+..| +.++.+|-.+| +.|.. ..-..+|++..+.- |-+..++...++.-
T Consensus 12 EDvpfEeEilRn-----p~svk~W~RYIe~k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~ 84 (835)
T KOG2047|consen 12 EDVPFEEEILRN-----PFSVKCWLRYIEHKAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAY 84 (835)
T ss_pred cccchHHHHHcC-----chhHHHHHHHHHHHccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHH
Confidence 344666555555 66888999999 45544 44566778777754 33333322222110
Q ss_pred -hhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007384 72 -KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEV 149 (605)
Q Consensus 72 -~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (605)
.-++.++.++.++.+|| ..|-.-+....+.|+.......|+..+.. -+......|...+......+-++.+..+
T Consensus 85 ~~vn~c~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred HHHHHHHHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 01233445555555554 45777778888999999999999887753 2222456788889988899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCCHH---HHHHHH
Q 007384 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVD---RAFDVL 220 (605)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~---~a~~~~ 220 (605)
++..++. ++..-+--|..+++.+++++|-+.+...... ..+.+-..|..+-+..++.-+.- ....++
T Consensus 161 yrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 9999854 5555788888999999999999999887643 12556667877777766654433 233444
Q ss_pred HHHhhCcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----------------c
Q 007384 221 AEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------T 282 (605)
Q Consensus 221 ~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~ 282 (605)
+.+. +.-+| ...|++|.+-|.+.|.+++|..+|++....-.. ..-|+.+-+.|.+ .
T Consensus 237 R~gi----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 237 RGGI----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred Hhhc----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4443 23455 457899999999999999999999987765221 1122222222221 1
Q ss_pred CC------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------Ch
Q 007384 283 GD------WEFACSVYDDMTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GI 339 (605)
Q Consensus 283 g~------~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 339 (605)
|+ ++-...-|+.+...+. ..++..|..-+. ...|+..+-...+.++.+.- .| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChh
Confidence 11 2223333443332211 012233333222 23566777778888877641 11 13
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----------CCC
Q 007384 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----------GLC 406 (605)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~ 406 (605)
..|..+...|...|+++.|+.+|++..+...+-- ..+|......=.++.+++.|++++++...- |-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688899999999999999999999987653222 346666667777889999999998886531 111
Q ss_pred C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHhhhhhhhhccCCC----
Q 007384 407 P-------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR---- 475 (605)
Q Consensus 407 p-------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~---- 475 (605)
| +...|+.+++.--..|-++..+.+++++++..+.....+-| |+--+++-.-++++.++|+.+-
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-----yAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-----YAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 1 22345666666667788888999999998764432222222 2221444444555666666552
Q ss_pred -ccchhhhHH---------------HHHHHHHHHHHcCCCCcHH
Q 007384 476 -PQIENKWTS---------------LALMVYREAIVAGTIPTVE 503 (605)
Q Consensus 476 -~~~~~~~~~---------------~a~~~~~~m~~~g~~p~~~ 503 (605)
|..-..|+. .|-.+|++.++ |+.|...
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 333456665 38889999988 7878775
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.2e-06 Score=80.66 Aligned_cols=377 Identities=13% Similarity=0.086 Sum_probs=193.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCh
Q 007384 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (605)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 108 (605)
..-++.++++..|+.+++--...+- ........-++..+-..|++++|+..|..+. .++...+-.+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4455667777777777765554331 1112233333444445677777777776543 34444555554444455666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (605)
.+|.++-... +.++..-..|.+...+.++-++-..+...+.. ...---+|.+..-..-.+.+|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6766655432 22333333444445555555555555544432 1122233444333344566666666666
Q ss_pred HhCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc--CC----------------
Q 007384 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQ---------------- 249 (605)
Q Consensus 189 ~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~---------------- 249 (605)
... .|+-...|.-+ -+|.+..-++-+.+++....+. ++.+.+..|.......+. |+
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 554 33444444322 3444555555555555554442 222233333322222211 11
Q ss_pred -----------------hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007384 250 -----------------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (605)
Q Consensus 250 -----------------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 312 (605)
-+.|++++--+.+. -+.+.-.|+-.|.+.++..+|..+.+++.- ..|-......+..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 12222222221111 134555667778888888888887766532 2333333333332
Q ss_pred HH-H----hcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007384 313 FA-G----HAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (605)
Q Consensus 313 ~~-~----~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (605)
+. + ......-|.+.|+-.-..+..-|. .--.++...+.-..++++.+-.+..+...-...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 21 1 112355666777666555443332 223344555555667788877777776654444444444 6778888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 007384 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLL 432 (605)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~ 432 (605)
.|.+.+|.++|-+.....+ .|..+|.+++ ..|.+.+.++.|+.++
T Consensus 406 tgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred hcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 8888888888865543222 3566666554 5556778877776554
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.3e-08 Score=92.34 Aligned_cols=229 Identities=14% Similarity=0.070 Sum_probs=135.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHH
Q 007384 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (605)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (605)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..+...|+.++.+-... ++-|+....-+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 55666666666666666666665554 455556666666666666666666666665542 2223333333445555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (605)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (605)
..++.++|.++++...+.. +.++++...+...|.-.++++.|+..++++.+.|+. +...|..+.-+|.-.+++|.++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 6666666666666666654 444555555556666666666666666666666665 55566666666666666666666
Q ss_pred HHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 326 ILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 326 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
-|++....-..|+ ..+|..|.......|++..|.+.|+-....+ ..+..++|.|.-.-.+.|++++|..++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6666555432222 3455555555566666666666666655443 23345666666666666666666666665554
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1.2e-07 Score=96.38 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=159.8
Q ss_pred HhhhHHHHHHHHHHhhCC--CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CC
Q 007384 71 CKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GK 142 (605)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~ 142 (605)
+...|+.++|++.++... -.| ..........+.+.|+.++|..+++.+++.+ |.|..-|..+..+..-. .+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 344455555555554422 122 2233445566777788888888888887765 44444444454444222 24
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007384 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (605)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (605)
.+...++|+++... -|...+...+.-.+.....+. .+...+..+..+|++ .+|+.|-..|.......-..+++.
T Consensus 93 ~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 56667777777654 243333333322222222232 344455666667754 455566666665555554555554
Q ss_pred HHhhCc------------CCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHH
Q 007384 222 EMNAEV------------HPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (605)
Q Consensus 222 ~~~~~~------------~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (605)
...... ..-+|... ++..+...|...|++++|....++..+.. |..+..|..-...+-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 443210 01123332 33444566667777777777777777664 4446667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH--------HHHHHHHHHhcCCHHHHH
Q 007384 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKAL 359 (605)
Q Consensus 288 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 359 (605)
|.+.++.....+.. |-..-+-.+..+.+.|+.++|.+++....+.+..|.... ......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777766554 666666666677777777777777776655543221111 123345566666666666
Q ss_pred HHHHHHH
Q 007384 360 ELYEHMK 366 (605)
Q Consensus 360 ~~~~~m~ 366 (605)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 6555544
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.7e-07 Score=85.47 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=96.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007384 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (605)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (605)
.-.|+.-.|..-|+..+.....++. .|--+..+|....+.++....|....+.+ +-++.+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3446666666677766665544332 25555556666777777777777766665 445666666666666666777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.=|++..+.. +-+...|-.+..+..+.+++++++..|++.++. ++--+..|+-....+..+++++.|.+.|+.+++
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 7777666543 233455555666666666777777777776654 333456666666777777777777777776665
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=6.4e-08 Score=97.21 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhC---cCC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-----C--
Q 007384 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-- 264 (605)
..+...+...|...|+++.|..++...... ..| ..|...+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999998876542 112 1233333 333667888999999999999988653 2
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007384 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (605)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (605)
.+.-..+++.|...|.+.|++++|...++...+ .|.. |.+ ..++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111245677888889999999998888876543 1222 222 24566777888999999999999876543 1
Q ss_pred CCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH--
Q 007384 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KL--KP-TVSTMNALITALCDGDQLPKTMEVLSDMK-- 401 (605)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 401 (605)
+.+ -..+++.|...|.+.|++++|.++|+++.+. +. .+ ....++.|...|.+.+++.+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2467899999999999999999999988752 11 11 24567888899999999999999998743
Q ss_pred --hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 402 --SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 402 --~~g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
..|. .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2231 233 4678999999999999999999998876
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=1.3e-07 Score=95.02 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--
Q 007384 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-- 192 (605)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-- 192 (605)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566778888888888888888776653 10 12222 2333555666777777777777766431 2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCc---CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007384 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPV-DPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (605)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (605)
.+.-..+++.|..+|.+.|++++|...+++...-. .+. .|+. ..++.+...|+..+++++|..++.+..+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~--- 355 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY--- 355 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---
Confidence 11123345556666777777666666655543210 000 1111 122333344444455555554444332210
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC---C
Q 007384 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI---S 336 (605)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~---~ 336 (605)
..-+.++ ..+++.+...|...|++++|.++|+.+... +. .
T Consensus 356 -----------------------------~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 356 -----------------------------LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred -----------------------------HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 0001111 234455555555555555555555544332 01 1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 337 VGIISYSSLMGACSNAKNWQKALELYEHMKS----IKL-KPT-VSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
-....++.|...|.+.++.++|.++|.+... .|. .|+ ..+|..|...|...|++++|+++.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1123445555556666666655555554322 111 122 345666666666666666666665554
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=8.5e-06 Score=75.22 Aligned_cols=406 Identities=11% Similarity=0.077 Sum_probs=253.0
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 007384 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (605)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 104 (605)
.++..|-+.+ +.|++++|...+.-+...+-. +......++-..--.|.+.+|..+-.+.+. ++..-..+.....+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 3666776655 899999999999988876632 222333333333345788889888777653 34444556666777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHH
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (605)
.++-.+-..+.+.+... ..---+|.......-.+++|++++...... .|+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 88888888887776542 223334555544555789999999999876 45555555544 45677888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcC---C---------------------CCCC-----H
Q 007384 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH---P---------------------VDPD-----H 234 (605)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~---------------------~~~~-----~ 234 (605)
+++-..+. ++-++...|....-..+.=.-..|.+-..++..... + +-|. .
T Consensus 207 vl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP 285 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP 285 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh
Confidence 88777665 234455666555444443222223333333322110 0 0010 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH--H-----HHHHHccCCHHHHHHHHHHHHHCCCCCCHH-H
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--A-----INCCSQTGDWEFACSVYDDMTKKGVIPDEV-F 306 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l-----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~ 306 (605)
..-..|+--|.+.+++.+|..+.+.+. +.++.-|-. + ..-........-|.+.|+..-+.+..-|.. -
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 112234445778899999988776543 222332222 2 222222234567777777666655443332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 007384 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-LITALC 385 (605)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~ 385 (605)
-.++.+.+.-..++++.+-++..+...=...|...+| +..+++..|++.+|.++|-++....+ .|..+|.+ |..+|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHH
Confidence 3345555566678899998888887765445555554 78899999999999999988875443 34556654 567899
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 386 DGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (605)
+++.++-|.+++-.+.. +.+..+.. .+.+-|.+.+.+--|.+.|+.+.. .+|+...|..=-.+|
T Consensus 440 ~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred hcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 99999999877655432 33444444 444778999999888889988877 677777776444444
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=1.2e-05 Score=80.36 Aligned_cols=349 Identities=13% Similarity=0.118 Sum_probs=237.1
Q ss_pred hHHHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007384 74 QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (605)
Q Consensus 74 ~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (605)
.+++...+++.+.+.. ....|.....-.+...|+.++|....+.-.+.. ..+.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3566666666665531 233344444444677899999999988887754 557889999998888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCC
Q 007384 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230 (605)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 230 (605)
......+ +-|...|.-+.-.-++.++++.....-..+.+.. +.....|..+..++.-.|+...|..++++..+... .
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~ 175 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-T 175 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence 9999876 5577888888777888999998888877777653 34567788888899999999999999999877532 2
Q ss_pred CCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 007384 231 DPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (605)
Q Consensus 231 ~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 304 (605)
.|+...+.-.. ....+.|..+.|.+.+..-...- ......-..-...+.+.+++++|..++..++..+ ||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 45555443322 34567888899988887654431 2222333455677889999999999999999874 566
Q ss_pred HHHHHHHH-HHHhcCCHHHHH-HHHHHHH----------------------------------HCCCCCChhHHHHHHHH
Q 007384 305 VFLSALID-FAGHAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMGA 348 (605)
Q Consensus 305 ~~~~~li~-~~~~~g~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~li~~ 348 (605)
.-|...+. ++.+-.+.-++. .+|.... +.|++ .++..+...
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SL 329 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHH
Confidence 65554443 333333333333 3333332 23322 122233333
Q ss_pred HHhcCCHHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007384 349 CSNAKNWQKALELYEHMK--------SIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (605)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~--------~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (605)
|-... ..- +.+++. ..| -+|....|+ .++..|-+.|+++.|...++....+ .|+
T Consensus 330 yk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPT 403 (700)
T KOG1156|consen 330 YKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPT 403 (700)
T ss_pred Hhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cch
Confidence 32211 111 222221 111 156666665 4677788999999999999998875 677
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 409 T-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 409 ~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
. .-|..=.+.+.+.|++++|...+++..+.
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 5 45667778899999999999999999875
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=4.3e-07 Score=87.46 Aligned_cols=218 Identities=11% Similarity=-0.023 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHhhCcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007384 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (605)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (605)
+..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45556666666665431 22222 3446666667778888888888888887765 55677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (605)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (605)
...|++..+..+. +..++..+..++...|++++|.+.++...+.+ |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888776543 45666777777778888888888888877764 22221222222344567788888888665432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
. .|+. |. ........|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|+..|+++.+.
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 2222 22 12223335555544 344444421 0 111 2356788888888899999999999888874
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3.7e-07 Score=79.37 Aligned_cols=198 Identities=11% Similarity=0.049 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007384 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (605)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (605)
+...|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667888888888888888888876 666778888888888888888888888887776544 5556677777777
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007384 316 HAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (605)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (605)
..|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888877652 22335677777777788888888888888887764 223456667777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
..++.....+. ++..+....|..-...|+.+.+-+.=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88887766553 7777777777777888888777776666655
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=3e-07 Score=88.47 Aligned_cols=149 Identities=15% Similarity=0.059 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 107 DSEGAFQVLRLVQEAG-LKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (605)
Q Consensus 107 ~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (605)
..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555554321 111 12345555555666666666666666665543 3345566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007384 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (605)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (605)
.|++..+.. +-+..+|..+..++...|++++|.+.|+..... .|+..........+...++.++|...|++..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666665542 223455555555566666666666666665542 2221111111122233455666666664433
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1e-05 Score=76.35 Aligned_cols=292 Identities=12% Similarity=0.046 Sum_probs=209.2
Q ss_pred CCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 007384 105 SKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAF 182 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~ 182 (605)
.++...|.+.+-.+.. .-++.|+.....+...+...|+.++|...|++.... .|+.. ....-.-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 3444445444444433 235667888999999999999999999999998754 33322 1222223346788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007384 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
.+...+.... ..+...|-.-........++..|+.+-+...... +.+...+..-...+...+++++|.-.|+....
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8777776542 2344455555555667788999999888876532 23344454445677889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCChh
Q 007384 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-DFAG-HAGKVEAAFEILQEAKNQGISVGII 340 (605)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (605)
.. +.+..+|.-|+..|...|++.+|.-+-++..+. +..+..+.+.+. ..|. ...--++|.++++...+.. +.-..
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~ 439 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTP 439 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHH
Confidence 64 567899999999999999999998877765443 122455555442 2222 2223478888888877764 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (605)
..+.+...+...|..+++..++++.... .||....+.|.+.+...+.+.+|++.|....+. .|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 6678888999999999999999988764 789999999999999999999999999998874 5643
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=4.5e-06 Score=83.43 Aligned_cols=304 Identities=15% Similarity=0.023 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---
Q 007384 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--- 202 (605)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--- 202 (605)
..|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3444445555555555555555544433210 1111 111122233455667777777776666542 233333331
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007384 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (605)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (605)
........+..+.+.+.+.... +..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA----PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhcccccCchhHHHHHhccC----cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 1111122344444444444311 22233 3344445566677777777777777777765 4455666777777777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhHH-H--HHHHHHHhcCC
Q 007384 282 TGDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKN 354 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~ 354 (605)
.|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 7777777777777665432 1222 2344566667777777777777777653321 1111111 1 22333333443
Q ss_pred HHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHHhc
Q 007384 355 WQKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-------P-NTITYSILLVACERK 422 (605)
Q Consensus 355 ~~~A~~~---~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------p-~~~t~~~ll~~~~~~ 422 (605)
...+.+. ......... ............++...|+.++|..++..+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3322222 111111100 111122234666778889999999999887653211 0 112222333456788
Q ss_pred CCHHHHHHHHHHHHH
Q 007384 423 DDVEVGLMLLSQAKE 437 (605)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (605)
|+.++|.+.+.....
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888775
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1e-05 Score=82.40 Aligned_cols=391 Identities=14% Similarity=0.075 Sum_probs=215.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--C--C-ChhhHHHHHHHHHh-CCCh
Q 007384 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKDS 108 (605)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~ll~~~~~-~~~~ 108 (605)
+.++|+++.+.+.|++....-+ .....++. +.-.+...|.-..|..+++.-. . | +...+-..-+.|.+ .+..
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~-~~~e~w~~-~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSF-GEHERWYQ-LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhh-hhHHHHHH-HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 3467777777777776654322 12222222 2222233344456666665432 1 2 23333333333443 3555
Q ss_pred HHHHHHHHHHHH--cCC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 109 EGAFQVLRLVQE--AGL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 109 ~~A~~~~~~m~~--~g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
++++....+... .+. ......|..+.-+|... ....++++.+++..+.+ +-|..+...+.--|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYA 489 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 565555555443 111 12334455555444432 11245566666666554 222222333333466
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (605)
..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....+. ..|......-+..-...++.+++
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhhhhhhcccHHHH
Confidence 677788888777777776445677777777777777778888877777665531 11111111112222223444444
Q ss_pred HHHHHHHHhc---------------------C-------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CC
Q 007384 254 REVYKMIHKY---------------------N-------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PD 303 (605)
Q Consensus 254 ~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~ 303 (605)
......+... + ....+.++..+..... -+.+.+..-. .+...-+. |+
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~-~Lp~s~~~~~~~ 643 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSEL-KLPSSTVLPGPD 643 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhccccc-ccCcccccCCCC
Confidence 4433322211 0 0000111111111111 0000000000 01111111 22
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007384 304 ------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (605)
Q Consensus 304 ------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (605)
...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|......+ +-++.+.
T Consensus 644 ~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~ 721 (799)
T KOG4162|consen 644 SLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSM 721 (799)
T ss_pred chHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHH
Confidence 1234455567777888888888777776653 5567777777788888999999999998887653 3346788
Q ss_pred HHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 378 NALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 378 ~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+.++|.+.|....+
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 889999999998888877 888888853 34678899999999999999999999988776
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=6.9e-07 Score=77.70 Aligned_cols=196 Identities=16% Similarity=0.079 Sum_probs=110.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 007384 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (605)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (605)
.|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|..-.-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34455566666666666666665553 2234456666666666666666666666665543 334445555555556666
Q ss_pred CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007384 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (605)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 291 (605)
++++|.+.|++.... +....-..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|...
T Consensus 118 ~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 666666666665543 1222223355555555556666666666666666654 33445555666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (605)
++.....+. ++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666655544 4555555555555666666555555444443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=6.9e-06 Score=82.07 Aligned_cols=197 Identities=14% Similarity=0.026 Sum_probs=87.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHH
Q 007384 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT--PEVYTIAINCC 279 (605)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~ 279 (605)
+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++...... .++ ...|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344445555555555555554321 22233444444555555555555555555444321 111 12233455555
Q ss_pred HccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCChhHHHHHHHHHHh
Q 007384 280 SQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGKVEAAFEI---LQEAKNQGI-SVGIISYSSLMGACSN 351 (605)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~ 351 (605)
...|++++|..++++...... .+..... . .++.-+...|....+.+. ......... ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 555555555555555433221 1111111 1 112222222322222111 111111100 1111222245566777
Q ss_pred cCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 352 AKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~---~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
.|+.+.|..+++.+...... - .+...-...-++...|+.++|.+++.+...
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888877643211 0 111122222345678888888888877654
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=2.7e-05 Score=71.73 Aligned_cols=317 Identities=12% Similarity=0.077 Sum_probs=157.6
Q ss_pred cCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHH---
Q 007384 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML--- 98 (605)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--- 98 (605)
|-++...+..-+.|+.+|++.+|+.-|....+.+ |.+-.....-+..+...|....|+.-|..+.+-.+..+.+-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 3344455555556666666666666666666554 44433333333344444444444444444332111112221
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 007384 99 MSVCASSKDSEGAFQVLRLVQEAGLKAD--CKL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (605)
Q Consensus 99 l~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 164 (605)
...+.+.|.+++|..=|+.+++...... ... ....+..+...|+...|+.....+++.. +.|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 1235566666666666666655431100 011 1112223334455555555555555443 334555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHH
Q 007384 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (605)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (605)
+..-..+|...|++..|+.-++...+.. .-++.++.-+-..+...|+.+.++...++..+ +.||...+-..-
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~Y--- 263 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFY--- 263 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHH---
Confidence 5555555555555555555444443332 22334444444455555555555555555442 244433221110
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHH
Q 007384 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDFAGHAGKVE 321 (605)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~ 321 (605)
..+.+..+.++. +......++|.++++..+...+..+...... +..+-.++...|++.
T Consensus 264 ---KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 264 ---KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred ---HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 011111111111 1223456677777777777766644322222 333444556677788
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (605)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (605)
+|++.-.++.... +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 325 eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 325 EAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8888777777653 4447777777777777778888888888777653
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.9e-05 Score=75.89 Aligned_cols=395 Identities=12% Similarity=0.103 Sum_probs=213.8
Q ss_pred ccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHH
Q 007384 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (605)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 100 (605)
+|.+...--.-.=++|+.+++++|+.+.+.-.... ..+...+.- +-..-+.+..++|+..++...+.+..+...-..
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEK-AYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEK-AYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQ 118 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHH-HHHHHHcccHHHHHHHHhcccccchHHHHHHHH
Confidence 34444444444456779999999996665433211 111111111 111235578999999999555555556666677
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhc
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKA 175 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---~~~~~~ 175 (605)
.+.+.+++++|+.+|+.+.+++. +|.. .-..++.+-.. -.+. +.+... ..| ..+|..+. -.+...
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~----l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA----LQVQ-LLQSVP---EVP-EDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh----hhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhc
Confidence 79999999999999999987763 2211 11111111100 0110 111111 122 22333322 234567
Q ss_pred CCHHHHHHHHHHHHhC-------C------CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHH-HHHHH
Q 007384 176 GQVAKAFGAYGIMRSK-------N------VKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGAL 240 (605)
Q Consensus 176 g~~~~A~~~~~~m~~~-------g------~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l 240 (605)
|++.+|+++++..... + +.-+..+. .-|.-.+-..|+..+|.+++.......+.-.|... .-|.|
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 7777777777766211 1 00001111 12333455667777777777776654211111111 11111
Q ss_pred HHHHHhc---------------------------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007384 241 MKACANA---------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (605)
Q Consensus 241 l~~~~~~---------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l 275 (605)
+.+-... +..+.+.++-.... +..|. ..+..+
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~l 345 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPIL 345 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHH
Confidence 1110000 00111111111100 11122 333344
Q ss_pred HHHHH--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCChhHHHHH
Q 007384 276 INCCS--QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSL 345 (605)
Q Consensus 276 i~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l 345 (605)
+.... +...+..+.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+..++
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~ai 423 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAI 423 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHH
Confidence 43332 223467777777776665433234556666777888999999999999 555544444 455677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007384 346 MGACSNAKNWQKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (605)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 419 (605)
+..|.+.++-+.|..++.+.... .-.+. ..+|.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|
T Consensus 424 v~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 424 VALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 88888888888888888776531 00122 2233444444557899999999999999853 67889999999999
Q ss_pred HhcCCHHHHHHHHHHH
Q 007384 420 ERKDDVEVGLMLLSQA 435 (605)
Q Consensus 420 ~~~g~~~~a~~~~~~~ 435 (605)
++. +++.|..+-..+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 886 567776655444
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=5e-05 Score=70.05 Aligned_cols=326 Identities=16% Similarity=0.158 Sum_probs=194.1
Q ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHH---HHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 007384 59 MDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLY-TTLI 134 (605)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~li 134 (605)
.+..-|.-+..-+...|++.+|+..|....+-|+..|.++.+ .|...|+..-|+.=+...++. +||-..- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344445555555566677888888887777666666666644 477777777777777777754 5663322 1223
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 007384 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (605)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (605)
..+.+.|.++.|..-|+.+++. .|+..+- ..++.+.-..++- ......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchh
Confidence 4556777888888777777765 3332111 1111111111111 11223344456678888
Q ss_pred HHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007384 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (605)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (605)
.|+.....+.+. .+-|...+..-..+|...|.+..|+.-++...+.. ..+...+..+-..+...|+.+.++...++
T Consensus 173 ~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 173 NAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888763 34566777777888888999988888888777765 45567777777888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007384 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (605)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 374 (605)
.++.+ ||....-. .| ..+.+..+.+..|.+ ....+++.++.+-.+...+.......
T Consensus 249 CLKld--pdHK~Cf~---~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFP---FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHccC--cchhhHHH---HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 77753 44322111 11 112222222222221 22344455555555555543211112
Q ss_pred H---HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 375 S---TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 375 ~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+ .+..+-.++...|++.+|++...+.++ +.|| ..++.--..+|.-...++.|+.-|+.+.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2 233344556667777777777777665 3454 56666667777777777777777777766
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=4.9e-05 Score=86.22 Aligned_cols=337 Identities=9% Similarity=-0.045 Sum_probs=208.7
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--C----CCC--HHHHHHHHHHHH
Q 007384 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--I----EPN--VHTYGALIDGCA 173 (605)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~~~--~~~~~~li~~~~ 173 (605)
....|+++.+...++.+.......+..........+...|+++++..++......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44567777766666554221111222233444555667889999999888765421 0 111 112223334566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCC---CHHHHHHHHHHHHh
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~ 246 (605)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111121 23455666677889999999998887642111111 12344556677888
Q ss_pred cCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 007384 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (605)
Q Consensus 247 ~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~ 315 (605)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876543 211 1 1233455666677889999999998886542 1112 2234444556777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCChhH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHc
Q 007384 316 HAGKVEAAFEILQEAKNQG--ISVGIIS----YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCD 386 (605)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 386 (605)
..|+.+.|...+....... ....... ....+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875431 1111110 011224455688999999998776542211111 113456677888
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 387 ~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999887642 32222 245666677888999999999999999875
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.8e-05 Score=75.22 Aligned_cols=377 Identities=14% Similarity=0.052 Sum_probs=208.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCh
Q 007384 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (605)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 108 (605)
-|..+..|+++.|+.+|-+.+..+ |.|.+.+..-...+.+.|++.+|++--.+.. +.=...|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 366778999999999999999887 6677777777777788888888876554432 23356788888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCCHHHHHH
Q 007384 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-----DGCAKAGQVAKAFG 183 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~ 183 (605)
++|+..|.+-++.. +.+...++-+.+++.... .+.+.|. ++..|..+. +.+...-.+..-++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999998887764 556677777777761110 1111111 111111111 11111111111111
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHH-HHHH------------HHHhhCcCCCCCC----------HHHHHH
Q 007384 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRA-FDVL------------AEMNAEVHPVDPD----------HITIGA 239 (605)
Q Consensus 184 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a-~~~~------------~~~~~~~~~~~~~----------~~~~~~ 239 (605)
.+..-... +...+ ...++.+.......+.- +..- ..+... .....| ..-...
T Consensus 154 ~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNG-FPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCC-CCccchhHHHHHHHHhhhHHHH
Confidence 11110000 00000 00011111100000000 0000 000000 000001 112445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHH
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-------SALID 312 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-------~~li~ 312 (605)
+.++..+..+++.|.+.+....... .+..-++....+|...|.+.++...-....+.|.. ...-| ..+..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6667777788888888888887765 44555677778888888888877777776665542 11122 22334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChh
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLP 391 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~ 391 (605)
+|.+.++++.++..|.+.......|+. ..+....+++....+...-. .|.. .---.-...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 666778888888888886655433322 22334445555554444332 2222 11111245567777888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007384 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (605)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (605)
.|+..|.+++... +-|...|+.-.-+|.+.|.+..|..-.+..++ +.|+.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~ 425 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNF 425 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchH
Confidence 8888887777653 33566677777777778887777777776666 34554
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=2.6e-05 Score=81.51 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHH
Q 007384 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (605)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~ 114 (605)
..+...|...|-+..+.+ +.-...+..+..+++...+...|.+.|++.- +.+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 445778888888888877 4556666778888887778888988888753 44556667777777777777777766
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=4.8e-07 Score=85.79 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChH
Q 007384 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 109 (605)
...+...-.|++..+++-.+ ...... +........+.+.+...|+.+.++.-.....+|.......+...+....+-+
T Consensus 6 f~vrn~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 6 FTVRNQFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHHHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchH
Confidence 34444455667776665555 222110 1122233344444445555554444333333444333333322222212222
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 110 GAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (605)
.+..-++........+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333222222111111 1122222223333445555555444321 23344444445555555555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007384 189 RSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (605)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (605)
.+.+ .|. +...+..++.. ...+.+|..+|+++... ..++..+.+.+..++...|++++|.+++......+
T Consensus 158 ~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 158 QQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 4432 121 12222222211 12344444444444321 23344444444444444444444444444444333
Q ss_pred CCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHH
Q 007384 265 IKGTPEVYTIAINCCSQTGDW-EFACSVYDDMT 296 (605)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 296 (605)
+.++.+...++......|+. +.+.+.+.++.
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 22333333444444444443 33334444433
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=0.00011 Score=83.53 Aligned_cols=332 Identities=9% Similarity=0.002 Sum_probs=210.2
Q ss_pred hhhHHHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHh
Q 007384 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAK 139 (605)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~ 139 (605)
...|+...+...++.++. .+..........+...|+++++...+....+.-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344566777777776641 2222233344456778999999999887754210 111 1122233445668
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhcc
Q 007384 140 SGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQS 210 (605)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~ 210 (605)
.|++++|...+++....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999988763111221 3456666677889999999999988764210 111 23445566778889
Q ss_pred CCHHHHHHHHHHHhhCc--CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHc
Q 007384 211 GAVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQ 281 (605)
Q Consensus 211 g~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~ 281 (605)
|++++|...+++..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999887765421 1111 1 23344455666778899999999998775531 111 23345556677889
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhc
Q 007384 282 TGDWEFACSVYDDMTKKG--VIPDEV--FL--SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNA 352 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 352 (605)
.|++++|.+.+....... ...... .. ...+..+...|+.+.|...+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999998875421 111111 10 1122445568899999988776544221111 11134677788899
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007384 353 KNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (605)
Q Consensus 353 g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (605)
|+.++|...+++.... +..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987642 22222 245666777889999999999999998874
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=1.4e-06 Score=82.67 Aligned_cols=247 Identities=15% Similarity=0.111 Sum_probs=137.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHH
Q 007384 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (605)
.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++... -.|.......+...+...++-+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 34566666665444 222211122334445566777777765433 233221 14444444434333322233334
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 253 AREVYKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (605)
Q Consensus 253 A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (605)
+..-++........+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 443333332222221 2222233334556677888887776542 255666677777888888888888888877
Q ss_pred HCCCCCChhHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007384 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (605)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (605)
+.+ .| .+...|..++. -...+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+....+ +-
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 653 23 23333433332 234688888888887664 35777888888888888888888888888876542 22
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 007384 408 NTITYSILLVACERKDDV-EVGLMLLSQAKE 437 (605)
Q Consensus 408 ~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~ 437 (605)
+..|...++......|+. +.+.+++.++.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 456777777777777777 567777777776
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=85.02 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=155.1
Q ss_pred HhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH
Q 007384 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (605)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (605)
+.+.|++.+|.-.|+....+. +-+...|..|.......++-..|+..+.+..+.+ +.+..+.-+|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 467788888888888877652 3456678778777888888888888888888876 667788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCC
Q 007384 287 FACSVYDDMTKKGVIPDEVFLSALID-----------FAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKN 354 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~-----------~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 354 (605)
.|++.++.-....++ |..+.. .......+....++|-++. ..+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888876554321 000000 0111112233444444443 34445778888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLS 433 (605)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~ 433 (605)
+++|.+.|+..+... +-|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999998888753 34577888888888888888999999988887 57763 455567778888888888887775
Q ss_pred HHH
Q 007384 434 QAK 436 (605)
Q Consensus 434 ~~~ 436 (605)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 554
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=0.00027 Score=72.34 Aligned_cols=356 Identities=12% Similarity=0.031 Sum_probs=214.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-hhHHHHHHHHHHhhCC--------CCChhhHHHHHHHHHhC--
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAFRFFKLVP--------NPTLSTFNMLMSVCASS-- 105 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~~~-- 105 (605)
..|.-..|..+++.-.....-|++........+.|. +.+.+++++.+-.++. .-....|-.+.-+|...
T Consensus 369 aag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~ 448 (799)
T KOG4162|consen 369 AAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR 448 (799)
T ss_pred HhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh
Confidence 567777788888765544322333333334444443 3444555544443321 12233343333333321
Q ss_pred ---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007384 106 ---------KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (605)
Q Consensus 106 ---------~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (605)
....++++.+++..+.+ +.|+.+.-.+.--|+..++++.|.+...+..+.+-.-+...|..|.-.+...+
T Consensus 449 ~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 449 QANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 12346777778877765 33433333344557788889999998888888755678888888888888889
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhh--------------------------CcCC
Q 007384 177 QVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNA--------------------------EVHP 229 (605)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------------------~~~~ 229 (605)
++.+|+.+.+..... .|+ -.....-+..-...++.++++.....+.. ....
T Consensus 528 r~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 528 RLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 999998888776654 111 11111111111123444444433322211 0000
Q ss_pred CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 007384 230 VDPDHITIGALMKACANAG-QVDRAREVYKMIHKYNIKGT--------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (605)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 300 (605)
......++..+.......+ ...-... +.+..+.|. ...|......+.+.+..++|...+.+......
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~ 681 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELK----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP 681 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccc----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch
Confidence 0001112222221111100 0000000 111111111 23466677788888999999888777766532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHH
Q 007384 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE--LYEHMKSIKLKPTVSTMN 378 (605)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~ 378 (605)
. ....|......+...|..++|.+.|......+ +.++....++..++.+.|+...|.. ++..+.+.+ +.+...|-
T Consensus 682 l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~ 758 (799)
T KOG4162|consen 682 L-SASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWY 758 (799)
T ss_pred h-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHH
Confidence 2 55667766677888899999999999888876 5667889999999999999888877 999999876 56789999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHh
Q 007384 379 ALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
.+...+.+.|+.++|.+.|.-..+
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 999999999999999999988654
No 96
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=4.5e-05 Score=73.42 Aligned_cols=211 Identities=11% Similarity=0.011 Sum_probs=138.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007384 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (605)
Q Consensus 98 ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (605)
+-..+...++.++|+.+...+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3344556678888888888888764 445566776666666776 5788888888887764 445667776665566666
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc---CCh-
Q 007384 177 QV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV- 250 (605)
Q Consensus 177 ~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~- 250 (605)
+. ++++..++++.+.. +-|..+|+...-++.+.|+++++++.++++.+.. ..+..+|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccccc
Confidence 53 56777887777665 4577788877777778888888888888887642 34555666555544443 222
Q ss_pred ---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 251 ---DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (605)
Q Consensus 251 ---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (605)
++......++.... +.+..+|+-+...+... ++..+|.+.+.+....++. +...+..++..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 35556665666654 55667777777777663 3345577777776654433 55666666666654
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.3e-05 Score=84.71 Aligned_cols=238 Identities=12% Similarity=0.052 Sum_probs=176.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 007384 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (605)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (605)
+-+...|-..|.-..+.++.++|.+++++....- .+ +.-...|.++++.-..-|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTI-NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 3456678888888888899999999998887531 11 1124567778877777888888889999988864 2246
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHH
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGAC 349 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~ 349 (605)
+|..|...|.+.+.+++|.++++.|.++- ......|...+..+.+..+-+.|..++.+..+.-. .-......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999998752 23567888888888888888899999988876521 12345556666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007384 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (605)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~ 427 (605)
.++|+.+.++.+|+...... +.....|+..|..-.++|..+.+..+|++....++.|-. ..|.-.|..-...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887653 445678999999999999999999999999988877743 456666655555666554
Q ss_pred HHHHHHHHH
Q 007384 428 GLMLLSQAK 436 (605)
Q Consensus 428 a~~~~~~~~ 436 (605)
+..+=.++.
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 444444443
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4e-08 Score=59.11 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
|+.||..|||+||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=0.00014 Score=65.95 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=129.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHH-HHHHHHhCC
Q 007384 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSK 106 (605)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-ll~~~~~~~ 106 (605)
.+.-.||+..++.+|++++..-.++. |.+..-...+...+-...++..|...|++.. .|...-|.. -...+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34557899999999999999888876 5566666666666666678999999998875 344433332 234566788
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (605)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (605)
.+..|+.+...|... |+...-..-+.+. ...+++..+..+.++.... -+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 899999998887642 3322222222222 3567888888888887643 2444555555556789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007384 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (605)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (605)
|+...+-+-......||.-+ +..+.|+.+.|++...++...
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh
Confidence 99887754344566776544 556778999999998888764
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.7e-08 Score=58.47 Aligned_cols=31 Identities=52% Similarity=0.822 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (605)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (605)
+.||..|||+||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1.6e-05 Score=78.43 Aligned_cols=252 Identities=14% Similarity=0.116 Sum_probs=136.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007384 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (605)
Q Consensus 138 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (605)
.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 45555666666666555543 3345556666666666666666666666555543 334455555555566666555665
Q ss_pred HHHHHHhhCcCCC----C--CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007384 218 DVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (605)
Q Consensus 218 ~~~~~~~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (605)
..++.-....+.. . ++...-.. ........+....++|-.+ ...+...|+.+...|.-.|.-.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 5555543211000 0 00000000 0111112223333444333 333334666677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 007384 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSI- 368 (605)
Q Consensus 291 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 368 (605)
.|+..+...+. |...|+.|...++...+..+|+..|++.++.. |+ +.+...|.-.|...|.+++|.+.|-..+..
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777665444 66677777777777777777777777776653 32 334445556677777777777766554421
Q ss_pred --------CCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007384 369 --------KLKPTVSTMNALITALCDGDQLPKTMEV 396 (605)
Q Consensus 369 --------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (605)
...++...|.+|=.++.-.++.|-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1122345666666666666666644433
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=7.4e-06 Score=82.88 Aligned_cols=213 Identities=14% Similarity=0.065 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 007384 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (605)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (605)
..+...+.+.|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 344555555566666666655543 2445555566666666666655555553 55566666655555555
Q ss_pred CCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007384 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (605)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (605)
.-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+
T Consensus 471 s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 5555666555543321 00111111122455566666665555544 4444555555555556666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 291 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.|.......+. +...|+.+-.+|.+.++..+|...+.+..+.+ .-+..+|-..+....+.|.+++|.+.+.++.
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 66555543222 33455666666666666666666666655555 3334445445555555566666665555554
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=5.9e-06 Score=83.55 Aligned_cols=211 Identities=12% Similarity=0.041 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh
Q 007384 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (605)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (605)
.+...+...|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+....
T Consensus 403 ~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccC
Confidence 3444444555555555555443 23444444555555555555554444332 3444455444444444
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (605)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (605)
..-+++|.++++....+ +-..+.......++++++.+.|+.-.+.+.- -..+|-....+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHH
Confidence 44444454444443222 0111111122244555555555544333221 233444444444455555555555
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
|..-.... +.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 55444432 3334455555555555555555555555555443 233334444444445555555555555544
No 104
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=0.0002 Score=68.97 Aligned_cols=208 Identities=7% Similarity=-0.006 Sum_probs=124.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-
Q 007384 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV- 213 (605)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~- 213 (605)
.+...++.++|+.+..++++.. +-+..+|+.--..+...| ++++++..++++.+.. +-+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 3445567788888888888763 334556776666666666 5788888888887764 44556676554445455542
Q ss_pred -HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc---CCH----
Q 007384 214 -DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW---- 285 (605)
Q Consensus 214 -~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~---- 285 (605)
++++.+++.+.... +.+..+|+...-++.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 124 ~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 124 ANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccH
Confidence 56677777776531 4456677777777777788888888888887776 44556666655544443 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 007384 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (605)
Q Consensus 286 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (605)
++.++...++....+. |...|+.+...+... +...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 200 e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3445555455554433 445555555555442 23344555555544433 3344455555555553
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=6.6e-05 Score=81.35 Aligned_cols=205 Identities=11% Similarity=0.116 Sum_probs=123.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 166 (605)
...|-.-+....+.++.+.|.+++++.+.. +.+ -...|.++++.-...|.-+...++|+++.+.. -.-..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 445666666666777777777777666542 111 12356666666666666666667777766542 1234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh
Q 007384 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (605)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (605)
.|...|.+.+.+++|-++|+.|.++ +......|...+..+.+..+-+.|..++.+....-+. .-......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHHhh
Confidence 6777777777777777777777654 1234566767777777777777777777666542100 1112223333444456
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 007384 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (605)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 302 (605)
.|+.+++..+|+...... |--...|+.+|+.-.++|+.+.++.+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 677777777777666553 3345667777777777777777777777777666554
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.002 Score=67.98 Aligned_cols=254 Identities=14% Similarity=0.170 Sum_probs=113.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 007384 28 QLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (605)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 106 (605)
-..+..+++..+-..+-+++++++.-.+ .++.+....++++-...+. +.....++.++...-|. -.+...+..++
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEIAIENQ 1062 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHHHhhhh
Confidence 3344455566666666666666655332 2223333333332221111 11122222222221111 01222344445
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (605)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (605)
-+++|..+|+.. ..+....+.|+. .-+.++.|.+.-++.. ....|+.+..+-.+.|.+.+|++-|-
T Consensus 1063 LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 555666655543 223344444443 2244455544444332 23456666666666666666655543
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007384 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (605)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (605)
+.. |+..|..+++...+.|.+++..+.+.-.+++ .-+|.. =+.|+-+|++.+++.+.+++.. -
T Consensus 1129 kad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------g 1191 (1666)
T KOG0985|consen 1129 KAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPYI--DSELIFAYAKTNRLTELEEFIA-------G 1191 (1666)
T ss_pred hcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCccc--hHHHHHHHHHhchHHHHHHHhc-------C
Confidence 321 4455666666666666666666655444433 122322 2345556666665554444331 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (605)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (605)
|+..-...+.+-|...|.++.|.-+|... ..|..+...+...|++..|.+
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555554444321 224444444444454444443
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0017 Score=68.48 Aligned_cols=250 Identities=15% Similarity=0.148 Sum_probs=158.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007384 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (605)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (605)
...+...+-+++|..+|++. ..+....+.||. .-+..+.|.+.-++.- ....|+.+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 34455566667777777665 345555555554 3355666665544432 346788888888888888
Q ss_pred HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007384 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (605)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 293 (605)
.+|.+-|-+. .|...|..+++...+.|.+++-.+.+....+....| .+-+.||-+|.+.++..+..++.
T Consensus 1121 ~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred HHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHh-
Confidence 8888777542 345578888888888888888888888777765444 34467888888888887665543
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007384 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (605)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (605)
.-|+......+.+-|...|.++.|.-++.. +.-|..|...+...|++..|...-++. .+
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 236777777888888888888888777754 344667777777778777776654443 24
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 434 (605)
..+|-.+-.+|...+.+.-| +|....+..-..-..-++.-|...|-+++.+.+++.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 55666666666555444322 222222222333444555555555555555554443
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=3.3e-05 Score=69.01 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
..+..+....+.|++.+|...|++..... ++|...|+.+.-+|.+.|+++.|..-|.+..+.. .-+....|.|.-.|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHH
Confidence 33334444444555555555554444432 4444455555555555555555555444444432 112333444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (605)
-.|+.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus 180 L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 4455555555544444432 223334444444444445555544443
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.001 Score=65.50 Aligned_cols=346 Identities=13% Similarity=0.086 Sum_probs=190.3
Q ss_pred HhhhHHHHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 007384 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (605)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A 146 (605)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 34568899999999753 3668888888888999999999998877666654 454 66888888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHH--HHhCCCCCCH--------HHHHHHHHHHhcc-----
Q 007384 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA-FGAYGI--MRSKNVKPDR--------VVFNALITACGQS----- 210 (605)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~--m~~~g~~p~~--------~~~~~li~~~~~~----- 210 (605)
+.-|.+-++.. +.|...++-+..++ ..+.+ .+.|.. |.. ++.-++ ..|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~-~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTKPYFHE-KLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccCcHHHH-HhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99998877763 34566667777666 11111 111110 000 000011 1122222221110
Q ss_pred --CCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh-cCChH----HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcc
Q 007384 211 --GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVD----RAREVYKMIHK-YNIKGTPEVYTIAINCCSQT 282 (605)
Q Consensus 211 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~----~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 282 (605)
...+..++....+... ... .+...-..... ...+. ..........+ .....-..-...+.+...+.
T Consensus 164 ~~l~d~r~m~a~~~l~~~----~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGV----DEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred cccccHHHHHHHHHHhcC----ccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0011111111111000 000 00000000000 00000 00000000000 00000012356677888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH-------HHHHHHHhcCCH
Q 007384 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-------SLMGACSNAKNW 355 (605)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~ 355 (605)
.++..|.+.+....+.. -+..-++....+|...|.+.+....-....+.|-. ...-|+ .+..+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 89999999999888775 25555666677888888888777766666555421 122222 234467778889
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 007384 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~ 434 (605)
+.|...|.+.......|+. ..+....++++.......- +.|.... ...=.+.+++.|++..|...+.+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999987764434332 2233445666666555443 3454321 22336778999999999999999
Q ss_pred HHHCCCCCCHHH
Q 007384 435 AKEDGVIPNLVM 446 (605)
Q Consensus 435 ~~~~g~~p~~~~ 446 (605)
+++.. |+...
T Consensus 384 AIkr~--P~Da~ 393 (539)
T KOG0548|consen 384 AIKRD--PEDAR 393 (539)
T ss_pred HHhcC--CchhH
Confidence 99864 55443
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0019 Score=63.74 Aligned_cols=405 Identities=11% Similarity=0.130 Sum_probs=236.3
Q ss_pred hhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHHHHHH
Q 007384 27 EQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV 101 (605)
Q Consensus 27 ~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~ 101 (605)
.++.+|+.|+ +...++++++.++++...- |....++...++.-...++++...++|.+.. .-+...|..-|.-
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 4566788888 3558999999999998654 6666666666666667788999999998743 3456777777663
Q ss_pred HHh-CCChHH----HHHHHHHHH-HcCCCC-CHHHHHHHHHH---------HHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 007384 102 CAS-SKDSEG----AFQVLRLVQ-EAGLKA-DCKLYTTLITT---------CAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (605)
Q Consensus 102 ~~~-~~~~~~----A~~~~~~m~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (605)
--+ .++... -.+.|+... +.|+.+ +-..|+.-+.. +....+++...+++.++....+.-=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 222 233333 233444333 445433 23345554443 33445667778888888754221111222
Q ss_pred H------HHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHhccC----
Q 007384 166 G------ALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG---- 211 (605)
Q Consensus 166 ~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g---- 211 (605)
+ .=|+.. -+...+..|.++++++.. +|+..+..+ |-.+|.-=-..+
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 2 111111 123456677777777653 343222222 433333211111
Q ss_pred --CH--HHHHHHHHHHhhCcCCCCCCHHH-HHH----HHHHHHhcCCh-------HHHHHHHHHHHhcCCCCCHHHHHHH
Q 007384 212 --AV--DRAFDVLAEMNAEVHPVDPDHIT-IGA----LMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTIA 275 (605)
Q Consensus 212 --~~--~~a~~~~~~~~~~~~~~~~~~~~-~~~----ll~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l 275 (605)
.. ....-.+++...- .+..|+..- +.. .-+.+...|+. +++..+++.....-...+..+|..+
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred cccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111112222111 123333221 111 11233444443 4445555544433222233344444
Q ss_pred HHHHHcc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHH
Q 007384 276 INCCSQT---GDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACS 350 (605)
Q Consensus 276 i~~~~~~---g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 350 (605)
...--.. ...+.....++++... ...|+ .+|...+..-.+..-++.|..+|.+..+.+..+ ++.++++++.-||
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 3321111 1355666666666543 23333 467777888888888999999999999887666 7788888888776
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 007384 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVG 428 (605)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a 428 (605)
.++.+-|.++|+--.+.- ..+..--...++-+...++-..|..+|++....++.|+ ...|..+|.-=+.-|+....
T Consensus 414 -skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 567789999998655431 23344445677778888888999999999988877765 47899999999999999999
Q ss_pred HHHHHHHHH
Q 007384 429 LMLLSQAKE 437 (605)
Q Consensus 429 ~~~~~~~~~ 437 (605)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 988887765
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=2.4e-05 Score=72.96 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=126.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H--
Q 007384 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V-- 162 (605)
Q Consensus 89 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~-- 162 (605)
+.....+..+...+...|++++|...|+.+.... +.+. .++..+..++.+.|++++|...++++.+.. |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3455667777778888999999999999887653 2222 466778888889999999999999988763 32 1
Q ss_pred -HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCC
Q 007384 163 -HTYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (605)
Q Consensus 163 -~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 232 (605)
.++..+...+.+. |+.+.|.+.|+.+... .|+ ...+..+..... .. ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH--------
Confidence 2455555556554 6788888888888766 333 223322211100 00 0000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+...
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678899999999999998877631 234578889999999999999999988887765
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.0033 Score=65.03 Aligned_cols=175 Identities=16% Similarity=0.203 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (605)
|-+++...|-.|+.++|-++-++ ..|......|.+.|-..|++.+|...|.+.. +|..-|+.|-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKE 1005 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHh
Confidence 34455555556666666555544 2366667777888888888888888777653 22222332222
Q ss_pred c---------------CCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------HHh--cC
Q 007384 210 S---------------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM--------IHK--YN 264 (605)
Q Consensus 210 ~---------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--------~~~--~~ 264 (605)
+ .+.-.|-.+|++.. .. ..-.+..|-+.|.+.+|+++--. +.. .+
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~g-----~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEELG-----GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHcc-----hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 1 22333344444321 01 12234457778887777765311 111 22
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHH
Q 007384 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----------KG----------------VIPDE----VFLSALIDFA 314 (605)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~----------------~~p~~----~~~~~li~~~ 314 (605)
...|+...+.-...++.+.++++|..++-...+ +| -.|+. .....+...|
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 234556666666666666666666655532211 11 12333 2345556677
Q ss_pred HhcCCHHHHHHHHHH
Q 007384 315 GHAGKVEAAFEILQE 329 (605)
Q Consensus 315 ~~~g~~~~a~~~~~~ 329 (605)
.+.|.+..|-+-|.+
T Consensus 1156 ~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HhccchHHHHHHHhh
Confidence 788887776655544
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00011 Score=66.52 Aligned_cols=315 Identities=12% Similarity=0.082 Sum_probs=174.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (605)
+.+.+..+.+..++..|.+++....++. +.+....+.|..+|....++..|-..++++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4445555566677777777777666653 336666677777777777777777777777654 344333322 123345
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (605)
+.+.+..|+++...|... |+...-..-+.+ ....+++..+..++++... +.+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-----en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-----ENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-----CCccchhccchheeeccccHH
Confidence 667777777777666542 222222222222 2345666677777666542 123334444444455677777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHH
Q 007384 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF----LSALIDFAGHAGKVEAAFEIL 327 (605)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~~a~~~~ 327 (605)
.|.+-|+...+.+--.....|+.-+. ..+.|+++.|++...++.+.|++..+.. -+-.+++ ...|+ -..++
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHH
Confidence 77777777666543333455554443 4455677777777777777766522110 0000000 00000 00000
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007384 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (605)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (605)
.. + -+..+|.-...+.+.|+++.|.+-+-.|+-. ....|++|...+.-.- ..+++.+..+-+.-+.... +
T Consensus 237 ~S----a---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-P 307 (459)
T KOG4340|consen 237 QS----A---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-P 307 (459)
T ss_pred HH----H---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-C
Confidence 00 0 0122333344566889999999988888632 2234666665543322 2344555555555555532 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 407 PNTITYSILLVACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 407 p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 434 (605)
-...||..++-.|++..-++.|..++.+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3568999999999999888888877743
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.00045 Score=71.08 Aligned_cols=231 Identities=14% Similarity=0.189 Sum_probs=136.0
Q ss_pred HHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHhc
Q 007384 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-G--------LKADCKLYTTLITTCAKS 140 (605)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-g--------~~~~~~~~~~li~~~~~~ 140 (605)
++..-|+++.|.+-.+.+. +...|..+.+.|.+..+++-|.-.+..|... | -.|+ .+-..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3556688888887776664 4566888888888888888777666555421 1 1122 2222233344577
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007384 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (605)
Q Consensus 141 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (605)
|.+++|+.+|++-.+ |..|=..|-..|.+++|+++-+.=-... =..||..-..-+-..++++.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 888999999888775 3344456777888888888755322211 1345555555555667777777777
Q ss_pred HHHh----------hCcC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 007384 221 AEMN----------AEVH-------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (605)
Q Consensus 221 ~~~~----------~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (605)
+... .+.+ .-..|...|.-...-.-..|+.+.|+.+|....+ |..++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 6431 1100 0012333344444444556777777777766543 445555556666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
+.++|-++-++ .| |....-.+.+.|...|++.+|..+|.+.
T Consensus 953 k~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66666655443 22 4444555666666666666666666554
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=5.3e-05 Score=67.82 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHHH
Q 007384 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTM 394 (605)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~ 394 (605)
++.+++...++...+.+ +.+...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444455444443 4455555555555555555555555555555543 23444555555442 44444 35555
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 395 EVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 395 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+++++..+. .| +...+..+...+...|++++|...|+++.+
T Consensus 131 ~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555553 23 344455555555555666666666655555
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.00076 Score=68.55 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=96.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007384 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (605)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (605)
+.+......+.+|+.+++.+...... ..-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 44445556666666666666554321 1234555666667777777776665421 134455667777777
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
..|.++-.+.. |.......|-+-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 66666544332 323334445555555566666666666655443 3442 345666677766666665543
Q ss_pred HhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 401 KSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 401 ~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
. |+ ..|...+..-+...|++..|.+.|-++.
T Consensus 877 h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 877 H-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred C-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 2 33 3455566666777788777777664443
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=6.8e-05 Score=69.92 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (605)
....+..+...+...|++++|...|+++... .|+ . .++..+...+.+.|++++|...|+++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555555566666666666655543 222 1 24455555555556666666666555543
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=7.5e-05 Score=66.87 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHH
Q 007384 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFEI 326 (605)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a~~~ 326 (605)
.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 334444444443333 334444444444444444444444444444443322 33333333332 123333 2444444
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
+++..+.+ +.+...+..+...+.+.|++++|...|+++.+
T Consensus 133 l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444433 22333444444444444444444444444433
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00096 Score=65.13 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007384 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (605)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 291 (605)
++.++...-+.+......-.|+...+...+.+......-..+..++.+..+ +.....+.-..-.+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 344455455555433222334555555555443333333333333333333 11223444444456677888889988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007384 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (605)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (605)
++.+...-+. |+..+......+.+.++.++|.+.++.+.... +......-.+..+|.+.|++.+|..+++...... +
T Consensus 329 l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 329 LQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 8888776433 56666677778888889999999888888774 2235666778888888999988888888877653 5
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 007384 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKC 449 (605)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~ 449 (605)
-|...|..|..+|...|+..+|....-+ +++..|+++.|...+....+. ...|+..-+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~da 467 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADA 467 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 6678888888999888888777655433 456678888888888888765 23344444555
Q ss_pred HHHHH
Q 007384 450 IIGMC 454 (605)
Q Consensus 450 li~~~ 454 (605)
.|+..
T Consensus 468 ri~~~ 472 (484)
T COG4783 468 RIDQL 472 (484)
T ss_pred HHHHH
Confidence 55543
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=9.7e-05 Score=66.06 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=82.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007384 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (605)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (605)
..+-..+...|+-+....+...... ....|.......+....+.|++..|...|.+..... ++|...|+.+..+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 3344445555555555555444322 123343444445555555666666666666555554 555556666666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007384 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (605)
+.|++++|..-|.+..+.-.. +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.......|++++|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666655555544322 33444444445555555666665555555443 2344455555555555566655555
Q ss_pred HHHH
Q 007384 361 LYEH 364 (605)
Q Consensus 361 ~~~~ 364 (605)
+-..
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.40 E-value=0.00032 Score=71.14 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=117.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007384 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (605)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (605)
+.+......+.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|.+. ..++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 444555667777777777766542 22334666677777888888887777543 2355667778888888
Q ss_pred HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007384 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (605)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 293 (605)
++|.++-.+.. +.+.....|.+-..-.-+.|++.+|.+++-.+.. |+ .-|.+|-+.|..++.+++..
T Consensus 808 ~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence 88877766653 3344455555555556667777777776644322 22 23566777777777766655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 007384 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (605)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (605)
+-... .-..|...+..-+...|++..|..-|-+.. -|.+-+++|-..+.+++|.++-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 43211 112345555666666777777776654322 2455666676667777666654
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=3.6e-05 Score=65.13 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (605)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455566666666666666666554 4456666666666666666666666666666553 3455666666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007384 175 AGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (605)
.|+.++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00039 Score=62.29 Aligned_cols=150 Identities=20% Similarity=0.153 Sum_probs=72.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh---
Q 007384 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--- 246 (605)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 246 (605)
..|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+- .+..+.+.|..++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhc
Confidence 34555555555555544311 1122222223344555555555555555531 233344444444433
Q ss_pred -cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-H
Q 007384 247 -AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA-F 324 (605)
Q Consensus 247 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a-~ 324 (605)
.+.+.+|.-+|+++.++- +|++.+.+-...++...|++++|..+++....+... ++.+...++......|...++ .
T Consensus 185 ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 234555666666655542 555555555666666666666666666665555443 444554444444444443332 3
Q ss_pred HHHHHHHH
Q 007384 325 EILQEAKN 332 (605)
Q Consensus 325 ~~~~~~~~ 332 (605)
+.+.+++.
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 34444443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00043 Score=73.76 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007384 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (605)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 309 (605)
...+...+..|.....+.|..++|..+++.+.+.. +.+......+...+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34557777788888888888888888888888875 556677788888888888888888888888877654 5666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007384 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (605)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (605)
+..++.+.|++++|..+|+++...+ +.+..++..+...+.+.|+.++|...|+...+.. .+-...|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7778888888888888888888743 4457788888888888888888888888887653 344455555443 2
Q ss_pred hhHHHHHHHHHHh
Q 007384 390 LPKTMEVLSDMKS 402 (605)
Q Consensus 390 ~~~A~~~~~~m~~ 402 (605)
...-..+++++.-
T Consensus 232 ~~~~~~~~~~~~~ 244 (694)
T PRK15179 232 LNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHcCc
Confidence 3344455666543
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.29 E-value=5.4e-05 Score=64.05 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=35.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (605)
.+...|++++|...|+...... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++...|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444443332 2233344444444444444444444444444332 2233344444444444444444
Q ss_pred HHHHHHHHH
Q 007384 393 TMEVLSDMK 401 (605)
Q Consensus 393 A~~~~~~m~ 401 (605)
|+..|+...
T Consensus 111 Ai~~~~~Al 119 (144)
T PRK15359 111 AREAFQTAI 119 (144)
T ss_pred HHHHHHHHH
Confidence 444444433
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00063 Score=73.29 Aligned_cols=233 Identities=10% Similarity=0.007 Sum_probs=136.9
Q ss_pred CCCCCCCCccC-chhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC
Q 007384 13 YPNGKHANYAH-DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91 (605)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 91 (605)
|.+....||+. +...-....+.+.+.+++++|.++.+...+.. |.....+...+..+.+.++.+++..+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------- 87 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------- 87 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------
Confidence 33444445433 44444455555668999999999999877765 55555555554455555554444322
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
.++.......++.-...+...|... .-+..++..+..+|-+.|+.++|..+++++++.. +-|..+.|.+...
T Consensus 88 -----~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~ 159 (906)
T PRK14720 88 -----NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATS 159 (906)
T ss_pred -----hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 3444445555554455555555543 3345577778888888888888888888888776 5577788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC-----------------cCCCCCCH
Q 007384 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-----------------VHPVDPDH 234 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------------~~~~~~~~ 234 (605)
|+.. ++++|.+++.+.... +...+++.++.+++..+... ..+...-.
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLV 223 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhH
Confidence 8888 888888887776643 33333444444444443321 01222223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (605)
.++-.+-..|-...+++++..+++.+.+.. +.+..+..-++.+|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 334444455555556666666666666654 334444455555444
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.0017 Score=63.52 Aligned_cols=241 Identities=14% Similarity=0.084 Sum_probs=162.8
Q ss_pred hhhhHHHHHHHHhcC-CHHHHHHHHHHHHH---cCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC------CCChh
Q 007384 25 VSEQLHSYNRLIRQG-RISECIDLLEDMER---KGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLS 93 (605)
Q Consensus 25 ~~~~~~~~~~l~~~g-~~~~A~~~~~~~~~---~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~ 93 (605)
.+.+-..++.|.+.| +...-.+.|+++.. .+. +|.-...|- ....++.++...-++++ .|+..
T Consensus 202 ~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~~ 275 (484)
T COG4783 202 QEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDFQ 275 (484)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccHH
Confidence 466777888888888 56666788888874 222 222122221 12244566665556665 34445
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
.+...+.+......-..+..++....+. .-..--|.. ...+...|++++|+..++.++..- +-|...+......+.
T Consensus 276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~ 351 (484)
T COG4783 276 LARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILL 351 (484)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5555555444333333333333322221 112223333 334557899999999999988763 446667777788999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (605)
+.++..+|.+.++++... .|+ ...+-.+..++.+.|+..+|..++++.... .+.|...|..|..+|...|+..+
T Consensus 352 ~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 352 EANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHH
Confidence 999999999999999987 455 666777889999999999999999988764 46677899999999999998877
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
+..-.. ..|.-.|+++.|...+....+.
T Consensus 427 a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 427 ALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 765443 3466678999999888887765
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.00027 Score=75.20 Aligned_cols=236 Identities=10% Similarity=0.099 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHHHhcCChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (605)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (605)
++.....+=.+.+..|..++| .+++.+..+ ++..........+++.-....... .+.+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 344444444556667777666 456666553 223333333333343333333332 355688899999
Q ss_pred HHHhccCCHHHHHHHHHHHhhCcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 007384 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (605)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (605)
....+.|..++|..+++...+. .|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999863 565 4566777889999999999999999999987 777888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (605)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (605)
++++|..+|++....+.. +..++..+..++...|+.++|...|+...+.. .+...-|+.++ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999986543 57889999999999999999999999998774 34455565544 23344455566
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHcC
Q 007384 364 HMKSI----KLKPTVSTMNALITALCDG 387 (605)
Q Consensus 364 ~m~~~----~~~~~~~~~~~li~~~~~~ 387 (605)
++.-. |.+..+.+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 55432 2222344555555555543
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00059 Score=73.50 Aligned_cols=239 Identities=8% Similarity=0.032 Sum_probs=147.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 007384 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (605)
Q Consensus 89 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (605)
+.+...|..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 456778888888888899999999998876664 343 33444444466667765555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc
Q 007384 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (605)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (605)
++.......++.-+.-+...|... .-+...+..+..+|-+.|+.+++..+++++.+-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 233333344443334444444443 2245577778888888888888888888887642 45677778888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (605)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (605)
++++|.+++.+.... |...+++..+.++|.++....+. |...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 888888888777654 55566777777778777776432 222222222
Q ss_pred HHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (605)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (605)
+.+... +..--..++-.+-..|.+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222211 112223444555566666777777777777777654 334455555665554
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.21 E-value=0.0078 Score=59.58 Aligned_cols=392 Identities=12% Similarity=0.119 Sum_probs=229.9
Q ss_pred HHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 007384 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (605)
Q Consensus 51 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~ 127 (605)
-++.+ |.+...+..+++-+..+ .+++++..++++. +.....|..-|..-....+++..+.+|.+.+.. ..+.
T Consensus 12 rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnl 86 (656)
T KOG1914|consen 12 RIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNL 86 (656)
T ss_pred HHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhH
Confidence 33444 77777777888877776 7999999999875 335668888899999999999999999998865 3456
Q ss_pred HHHHHHHHHHHhc-CChhHH----HHHHHHH-HHcCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhC
Q 007384 128 KLYTTLITTCAKS-GKVDAM----FEVFHEM-VNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 128 ~~~~~li~~~~~~-g~~~~A----~~~~~~m-~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 191 (605)
..|..-++--.+. ++...+ .+.|+-. .+.|..+ +...|+.-+.. |....+++...++|+++...
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 6676666543322 333332 2333332 2344433 33456666553 34455677888888888754
Q ss_pred CCCCCHHHHH------HHHHHH-------hccCCHHHHHHHHHHHhhCcCCCCCCHHH---------------HHHHHHH
Q 007384 192 NVKPDRVVFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKA 243 (605)
Q Consensus 192 g~~p~~~~~~------~li~~~-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~ll~~ 243 (605)
.+.-=...|+ .=|+.. -++..+..|.++++++..-..|+.....+ |..+|.-
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 2211111222 111111 12344667777776664322232211111 3333321
Q ss_pred HHhcCChH---------HHHHHHHHHH-hcCCCCCHHHHHHHHHH-------HHccCC-------HHHHHHHHHHHHHCC
Q 007384 244 CANAGQVD---------RAREVYKMIH-KYNIKGTPEVYTIAINC-------CSQTGD-------WEFACSVYDDMTKKG 299 (605)
Q Consensus 244 ~~~~g~~~---------~A~~~~~~~~-~~~~~~~~~~~~~li~~-------~~~~g~-------~~~A~~~~~~m~~~~ 299 (605)
-+.+-+. ...-++++.. -.+.. +.+|.-.-.. +...|+ -+++..+++.....-
T Consensus 247 -EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 247 -EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred -HhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 1111111 1111222221 11222 2333222222 222233 355666666554432
Q ss_pred CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 007384 300 VIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVS 375 (605)
Q Consensus 300 ~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~ 375 (605)
..-+..+|..+...--.. ...+....+++++...-...-..+|..+++.-.+..-++.|+.+|.+..+.+..+ ++.
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 222444444443321111 1355566666666654322234567888888888889999999999999887777 788
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIG 452 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~ 452 (605)
..++++.-||. ++.+-|.++|+-=.+. -+|.. --...++-+.+.++-..++.+|++....++.||. .+|..+|+
T Consensus 404 Va~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 404 VAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 88889888775 6778999999884443 34444 4457788888999999999999999988666654 57888876
Q ss_pred H
Q 007384 453 M 453 (605)
Q Consensus 453 ~ 453 (605)
-
T Consensus 481 y 481 (656)
T KOG1914|consen 481 Y 481 (656)
T ss_pred H
Confidence 3
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0016 Score=58.50 Aligned_cols=247 Identities=13% Similarity=0.042 Sum_probs=135.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChH
Q 007384 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (605)
+.-.|.+..++..-...... +-+...-..+-++|...|.+..... ++.. +-.|.......+......-++.+
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~---~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE---GKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc---ccCChHHHHHHHHHHhhCcchhH
Confidence 33456666665554443332 1233334445566666665543222 1111 11233223222222222233333
Q ss_pred HHH-HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 252 RAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 252 ~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
.-. .+.+.+.......+......-...|++.|++++|++..+... +......=+..+.+..+.+-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 333444444333333333444456777888888887776521 2222222234455667778888888877
Q ss_pred HHCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007384 331 KNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (605)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (605)
.+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+.+..++...|++++|..++++...+. .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 7643 45566656555543 45678888888888764 26778888888888888888888888888877653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 007384 407 PNTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (605)
Q Consensus 407 p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~ 437 (605)
-++.|...++-.-...|...+ ..+.+.++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 356666666655555555433 3344555554
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=0.0001 Score=61.91 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=35.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007384 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 424 (605)
+...+.+.|++++|...|+.+.+.+ +.+...|..+...+...|++++|...+++..+.+ +.+..++..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3333444444444444444443322 2233334444444444444444444444433321 1123333333344444444
Q ss_pred HHHHHHHHHHHHH
Q 007384 425 VEVGLMLLSQAKE 437 (605)
Q Consensus 425 ~~~a~~~~~~~~~ 437 (605)
+++|...++...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.15 E-value=0.018 Score=61.31 Aligned_cols=184 Identities=9% Similarity=0.045 Sum_probs=120.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007384 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (605)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (605)
+...|+..|-+..+.. +--...|..|...|....+...|.+.|++..+.+ ..+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3566666665555442 1224568888888888778888888888887765 4567777888888888888888888743
Q ss_pred HHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 007384 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (605)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (605)
...++. ....-...|....-.|.+.++...|..-|+...+.+ +.|...|..+..+|...|++..|.++|.+....+
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 332211 001111222223344667778888888888887766 6677888888888888888888888888776653
Q ss_pred CCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 007384 302 PDEVFLSAL--IDFAGHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 302 p~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~ 332 (605)
|+. +|... ...-+..|.+.+|.+.+..+..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 322 22222 2234567888888888777654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=0.00012 Score=61.49 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=97.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (605)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (605)
+.++........ +......+...+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...+++..+.+
T Consensus 4 ~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355666665433 44556677778889999999999999998875 5678889999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (605)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 416 (605)
+.+...+..+...|...|++++|+..|++..+. .|+...+..+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 556788888899999999999999999998874 57665544433
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.017 Score=60.70 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=135.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChHHH
Q 007384 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A 111 (605)
.+..+++..|.+...++.++. |.......+-+-...+.|..++|..+++.. ...|..|...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 456788888888888888775 443333333333345667778888777654 234777888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHH
Q 007384 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKA 181 (605)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 181 (605)
..++++..+. .|+......+..+|.+.+++.+-.+.--++-+. ++.+.+.+=++++.+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888888754 566777777778888887765543333333322 23445555555565554321 2345
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007384 182 FGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 182 ~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
.+.++.+.+.+ -.-+..-...-...+-..|++++|..++..-.... -...+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666666553 11122222222334456677888888874322221 12233334445566677777777777777777
Q ss_pred HhcC
Q 007384 261 HKYN 264 (605)
Q Consensus 261 ~~~~ 264 (605)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6665
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5e-06 Score=50.83 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (605)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.023 Score=59.89 Aligned_cols=223 Identities=12% Similarity=0.061 Sum_probs=153.7
Q ss_pred hhHHHHHHHHHHhhCC--CCChhhHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007384 73 SQKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (605)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 148 (605)
..+++.+|+....++. .||.. |...+.+ +.+.|+.++|..+++.....+ ..|..|...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3467888888877754 34443 4444454 578899999999998887665 3388999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------HHHHHH
Q 007384 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFD 218 (605)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~ 218 (605)
+|+...+. .|+......+..+|.+.+.+.+-.++=-+|-+. ++-+...+=++++...+.-. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999876 688888888889999988776544443333332 23344555556665554421 234666
Q ss_pred HHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
.++.+..+. |-.....=...-.......|.+++|.+++. ...+.-.+.+...-+.-+..+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 677776653 311121112222344567888999999984 444444344556666778888999999999999999998
Q ss_pred CCCC
Q 007384 298 KGVI 301 (605)
Q Consensus 298 ~~~~ 301 (605)
.|..
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 8754
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.2e-05 Score=49.12 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007384 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (605)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (605)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777776666665
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1e-05 Score=48.99 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (605)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0083 Score=53.65 Aligned_cols=126 Identities=14% Similarity=0.058 Sum_probs=57.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 007384 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (605)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (605)
++-+....|+.+.|...++++.... +.+..+-..-...+-..|++++|.++++.+.+.+ +.|..++--=+...-..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3334444555555555555554431 1111111111112333455555555555555544 44444444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
|+.-+|++-+.+..+.- ..|...|.-+...|...|++++|.-.++++.-.
T Consensus 134 GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred CCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 44445555554444432 225555555555555555555555555555443
No 141
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=0.0066 Score=61.70 Aligned_cols=373 Identities=12% Similarity=0.110 Sum_probs=200.3
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH----------HHHHhcCChhHH
Q 007384 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI----------TTCAKSGKVDAM 146 (605)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li----------~~~~~~g~~~~A 146 (605)
+++|.++.+. +|.+..|..+.......-.++.|+..|-+... -+....-..|- ..-+--|.+++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 4555555554 45667788777766666677777777755432 12111111111 112234788999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
.++|-+|.++. ..|..+.+.|++-.+.++++.--.. .-..-...|+.+...++....+++|.+.+..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99988876542 3466777888888877776532110 0011245788888888888888888888865321
Q ss_pred CcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (605)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 305 (605)
. ...+.++.+..++++-+.+-..+.+ +....-.+..++...|.-++|.+.|-+- +. |
T Consensus 825 --------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p--- 881 (1189)
T KOG2041|consen 825 --------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P--- 881 (1189)
T ss_pred --------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c---
Confidence 1 1246666666666665555554433 3456667778888888888887776432 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH--------------HHHHHHHHhcCCHHHHHHHHHHHHh----
Q 007384 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY--------------SSLMGACSNAKNWQKALELYEHMKS---- 367 (605)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~---- 367 (605)
...+..|...+++.+|.++-+...- |.+.+. ---|..+.+.|+.-.|.+++.+|.+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 2345567777777777766544211 111111 1234566777777777777777754
Q ss_pred CCCCCCHH----HHHHH-HHHH----------HcCCChhHHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcC
Q 007384 368 IKLKPTVS----TMNAL-ITAL----------CDGDQLPKTMEVLSDMKSL-------GLCP--NTITYSILLVACERKD 423 (605)
Q Consensus 368 ~~~~~~~~----~~~~l-i~~~----------~~~g~~~~A~~~~~~m~~~-------g~~p--~~~t~~~ll~~~~~~g 423 (605)
.+.++-.. ...++ +.-+ -++|..++|..+++.-... +.-- ....|..|..--...|
T Consensus 956 K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 956 KYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 23322211 11111 1111 1467777887766553211 0111 1223344444455678
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHH-HHHH-hhHHHHHhhhhhhhhccCCCccchhhhHHHHHHHHHH
Q 007384 424 DVEVGLMLLSQAKED-GVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492 (605)
Q Consensus 424 ~~~~a~~~~~~~~~~-g~~p~~~~~~~li-~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 492 (605)
.++.|.+.--.+.+. .+-|...+|+.|- .+|+ |.+.-|-.-.-.+..|..........+..+|+++|.+
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk 1107 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSK 1107 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhcc
Confidence 888887655444443 4667777776432 1221 2233332222222223222222233445567777754
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2e-05 Score=47.71 Aligned_cols=32 Identities=44% Similarity=0.756 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007384 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (605)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (605)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00056 Score=67.33 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=57.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 007384 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (605)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (605)
.|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555443 22 22234444444445555555555554432 233444444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 354 NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
+++.|..+.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555443 232 335555555555555555555554443
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.02 Score=51.34 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=86.2
Q ss_pred CChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007384 106 KDSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (605)
.+.++.++++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +.+..+--.-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345555555555542 22 223322 34444555555666666666666655441 1111111111112333456666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007384 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
|.++++.+.+.+ +.|.+++--=+-..-..|+.-+|++-+..... .+..|...|.-+...|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~---~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD---KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 666666666554 34444444333333334444455555554443 23455555555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHC
Q 007384 261 HKYNIKGTPEVYTIAINCCSQTG---DWEFACSVYDDMTKK 298 (605)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 298 (605)
.-.. |.++..+..+...+.-.| +.+-+.+.|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5443 333333333333332222 334444445444443
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00081 Score=66.25 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (605)
....+|+..+...++++.|..+|+++.+.+ | .....++..+...++-.+|.+++++..+.... +...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344556666666777778888887777664 3 34445667777777777888888777765433 555566666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
.+.++++.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77888888888888887764 45566888888888888888888888877763
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.0012 Score=56.01 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChh
Q 007384 317 AGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNALITALCDGDQLP 391 (605)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~ 391 (605)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555655566655543 112 122233445556666666666666666654322221 23334555666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (605)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 435 (605)
+|+..++..... ......+......+.+.|+.++|+..|+..
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666543221 123334445556666666666666666543
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.80 E-value=0.00038 Score=68.81 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (605)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (605)
+...+..++..+....+++.+..++.+.... ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344444444444444444444444444433 11111223334555555555555555555444445555555555555
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007384 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (605)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 421 (605)
++.+.+.|++..|.++..+|..++...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555444444444444444444444433
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0013 Score=55.76 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=8.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 007384 343 SSLMGACSNAKNWQKALELYE 363 (605)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~ 363 (605)
....+.|.+.|+.++|...|+
T Consensus 122 ~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 122 ELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 333444444444444444443
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00066 Score=67.16 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007384 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (605)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (605)
.+.+......+++.+....+++++..++.+..........-..|..++++.|.+.|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 35566677777777777777788888777776543222222334457888888888888888888888888888888888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007384 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (605)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (605)
|.|++.+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888777666655666666666666554
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=3.7e-05 Score=45.35 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (605)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00063 Score=52.54 Aligned_cols=77 Identities=16% Similarity=0.367 Sum_probs=52.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHcCCCCCHHHHHH
Q 007384 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGK--------VDAMFEVFHEMVNAGIEPNVHTYGA 167 (605)
Q Consensus 97 ~ll~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (605)
..|..|...+++.....+|+.+++.|+ -|+..+|+.++.+.++..- +-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556667888888888888888888 7888888888887766532 2344555666666666666666666
Q ss_pred HHHHHH
Q 007384 168 LIDGCA 173 (605)
Q Consensus 168 li~~~~ 173 (605)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665544
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.0023 Score=52.03 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=6.8
Q ss_pred HHHhccCCHHHHHHHHHH
Q 007384 205 TACGQSGAVDRAFDVLAE 222 (605)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~ 222 (605)
.++.+.|+++.|.+.|+.
T Consensus 47 ~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHhhccHHHHHHHHHH
Confidence 333333333333333333
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=7.1e-05 Score=44.08 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (605)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (605)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.0016 Score=50.03 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=44.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007384 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (605)
Q Consensus 98 ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (605)
+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444555555555555554432 2233444445555555555555555555554432 2233344455555555555
Q ss_pred HHHHHHHHHHHH
Q 007384 178 VAKAFGAYGIMR 189 (605)
Q Consensus 178 ~~~A~~~~~~m~ 189 (605)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.56 E-value=0.0012 Score=51.12 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVVF 200 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~ 200 (605)
....|..+...+++...-.+|+.+++.|+ .|+..+|+.++...++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455566667899999999999999998 889999999998877643 345677888888888889999999
Q ss_pred HHHHHHHhc
Q 007384 201 NALITACGQ 209 (605)
Q Consensus 201 ~~li~~~~~ 209 (605)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877654
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.0014 Score=50.45 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007384 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (605)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 421 (605)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344555556666666666666665442 2233455555666666666666666666655532 2233455556666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 007384 422 KDDVEVGLMLLSQAKE 437 (605)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (605)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.0037 Score=50.81 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 007384 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGALID 170 (605)
Q Consensus 96 ~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~ 170 (605)
..+...+.+.|++++|...|..+.+.. +.+ ...+..+..++.+.|+++.|.+.|+.+...... ....++..+..
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555555432 111 233444555555555555555555555443100 11234444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007384 171 GCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (605)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0044 Score=61.28 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=57.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 426 (605)
.+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++++.. .| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 3445566666666666666543 234555555666666666666666666666553 33 3445555666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (605)
+|...|+++++ +.|+.......+.-|
T Consensus 88 eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 66666666665 445444444444433
No 159
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.044 Score=49.38 Aligned_cols=132 Identities=9% Similarity=0.057 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcC---CCCCCHHHHHHHHH
Q 007384 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH---PVDPDHITIGALMK 242 (605)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~ll~ 242 (605)
+.++..+.-.|.+.-...++.+.++...+.++.....|.+.-.+.||.+.|...|++..+... +..-...+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444555555555656666666666554445555555666666666666666666665433210 11111111222222
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
.|.-.+++..|...+.++...+ +.++..-|.-.-+..-.|+..+|++..+.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555555555555554 333343333333333345566666666666554
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.43 E-value=0.004 Score=61.57 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=64.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (605)
.+...|+++.|++.|.++.+.. +.+...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 4445667777777777776654 3455666666677777777777777777776653 3345666667777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 393 TMEVLSDMKSLGLCPNTITYSILL 416 (605)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll 416 (605)
|+..|++..+ +.|+...+...+
T Consensus 89 A~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHH
Confidence 7777777665 345544444443
No 161
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.088 Score=47.51 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH---
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 346 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 346 (605)
.+.+.++..+.-.|.+.-...++++..+.....++...+.+.+.-.+.|+.+.|..+|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45667778888888888888889988887766788888899999999999999999999887654344444444333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 347 --GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (605)
Q Consensus 347 --~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 416 (605)
..|.-.+++..|...|.++.... +.|+...|.-.-++.-.|+..+|++.++.|... .|...+-.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34556778888888888887654 455666666555566678899999999999874 56655544433
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.0066 Score=50.76 Aligned_cols=95 Identities=7% Similarity=-0.111 Sum_probs=59.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (605)
..-.+...+...|++++|.++|+-+....+. +..-|-.|..++-..|++.+|+..|......+ +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344455556667777777777666655443 45555566666666677777777776666665 355666666666677
Q ss_pred hcCCHHHHHHHHHHHHh
Q 007384 351 NAKNWQKALELYEHMKS 367 (605)
Q Consensus 351 ~~g~~~~A~~~~~~m~~ 367 (605)
+.|+.+.|.+-|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777776666554
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.0028 Score=55.59 Aligned_cols=101 Identities=12% Similarity=0.238 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007384 337 VGIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (605)
Q Consensus 337 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (605)
.+..+|..+++.|.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- |...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-
Confidence 345566666666653 35556566666777777777777777777776654 2211 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (605)
Q Consensus 412 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (605)
+.++..- .-.+.+-|+.++++|...|+-||..++..|++.+|+
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 1111111 112345566677777777777777777777776665
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.005 Score=58.64 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (605)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (605)
.+|..++....+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|..+|+...+. +..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777777777777776443 3344445444444333 45556678888777654 34566777777777
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 384 LCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+.+.|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+....+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777888888888777654 22222 3677777777788888888888877776
No 165
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.0017 Score=56.86 Aligned_cols=105 Identities=20% Similarity=0.255 Sum_probs=65.3
Q ss_pred CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 007384 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (605)
Q Consensus 89 ~~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 163 (605)
..+..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3455666666666553 35666667777778888888888888888877643 3221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007384 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (605)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (605)
. -.-.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 1123456677888888888888888888888888776654
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.35 E-value=0.007 Score=50.64 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (605)
.-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3334444566677777777777766554 4455556666666666677777777777766665 3456666666677777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007384 175 AGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (605)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777665543
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.29 E-value=0.017 Score=59.75 Aligned_cols=142 Identities=12% Similarity=0.025 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHHHHh
Q 007384 301 IPDEVFLSALIDFAGHAG-----KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------KNWQKALELYEHMKS 367 (605)
Q Consensus 301 ~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~ 367 (605)
..+...|...+.+..... ....|..+|++..+.. +.....+..+..+|... .++..+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 345555666655543321 2456666666666653 22233444333333221 123344444444333
Q ss_pred C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007384 368 I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (605)
Q Consensus 368 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (605)
. ....+...|.++.......|++++|...+++..+. .|+...|..+...+...|+.++|.+.++++.. +.|...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 2 12344567777766666778899999999988874 57888888888888899999999999988887 4555444
Q ss_pred H
Q 007384 447 F 447 (605)
Q Consensus 447 ~ 447 (605)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0063 Score=57.97 Aligned_cols=131 Identities=14% Similarity=0.206 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007384 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (605)
+|..+++..-+.+..+.|.++|.+.... .....+.+...+++. |...++.+.|.++|+...+. ++.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555555555555566666666665532 122222222222222 22234455566666665554 34455566666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 279 CSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+++...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665543 2111 135666666666666666666666666554
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.27 E-value=0.018 Score=59.69 Aligned_cols=145 Identities=10% Similarity=-0.077 Sum_probs=100.8
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 007384 264 NIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------GKVEAAFEILQEA 330 (605)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~~ 330 (605)
..+.+...|..++.+.... +....|..+|++..+..+. ....+..+..++... .+...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3466778888888775433 2367888999988887543 344455443333221 1223444444443
Q ss_pred HHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007384 331 KNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (605)
Q Consensus 331 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (605)
... ..+.+...|.++.-.+...|++++|...+++..+.+ |+...|..+...+...|++++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 234456778878777778899999999999999874 6888999999999999999999999999876 46766
Q ss_pred HHHH
Q 007384 410 ITYS 413 (605)
Q Consensus 410 ~t~~ 413 (605)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6654
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.24 E-value=0.00061 Score=51.52 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 007384 352 AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 429 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~ 429 (605)
.|+++.|..+|+++.+.... ++...|..+..+|.+.|++++|+.++++ .+ ..|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35556666666666554211 1233344456666666666666666655 21 12222 23333355556666666666
Q ss_pred HHHHH
Q 007384 430 MLLSQ 434 (605)
Q Consensus 430 ~~~~~ 434 (605)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.018 Score=50.47 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=38.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (605)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555443322211 2344444445555555555555555554432 2233344444444
Q ss_pred HHhcCCH
Q 007384 349 CSNAKNW 355 (605)
Q Consensus 349 ~~~~g~~ 355 (605)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5444443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.20 E-value=0.00085 Score=50.71 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007384 317 AGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (605)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (605)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666555321 1333444456666666666666666655 2211 1122333334555666666666666
Q ss_pred HHHH
Q 007384 396 VLSD 399 (605)
Q Consensus 396 ~~~~ 399 (605)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.005 Score=56.58 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=71.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007384 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (605)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 427 (605)
..+.+++++|+..|.+.++.. +.|.+.|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 456777788888888777754 44566677777778888888888777777665 3454 4677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
|.+.|++.++ +.|+..+|..=++.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 8888877777 77777766655443
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.0039 Score=57.23 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChH
Q 007384 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~ 109 (605)
|.+++++++.+|++.|.+.++.+ |.+++++..-+.++.+.|.++.|++-.+.... ....+|..|..+|...|++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 34556667777777777666665 66666666666666666666666666555432 22345666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTT 132 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~ 132 (605)
+|.+.|+..++. .|+-.+|-.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHH
Confidence 666666665543 455444433
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.0014 Score=47.19 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=45.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHHH
Q 007384 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (605)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (605)
|++.|++++|++.|+++.... |.+..+...++.++...|++++|...++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467888889999998888877 6777777778888888888888888888765 3443344433
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.12 Score=49.81 Aligned_cols=176 Identities=14% Similarity=0.064 Sum_probs=104.0
Q ss_pred CCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007384 232 PDHITIGAL-MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (605)
Q Consensus 232 ~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 308 (605)
|.-.++..+ ..++...|+.++|..+--.+.+.+ .. ..+..++++ +.-.++.+.|...|++-+..+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 433444333 245566788888887777776655 22 233333333 334567788888887776654 3332211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 007384 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALC 385 (605)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~ 385 (605)
..-...+.+..+...| +-..+.|++..|.+.|.+.+.. +..|+...|........
T Consensus 241 ----------~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 241 ----------SASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ----------hHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 1111222233333333 2345788888888888887753 33455666766777778
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 386 DGDQLPKTMEVLSDMKSLGLCPNTIT---YSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
+.|+..+|+.--++... .|..- |..-..++.-.+++++|.+-++.+.+.
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888777664 23322 222234455678888888888888764
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.015 Score=50.76 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (605)
..|..+...+...|++++|...|++.......| ...++..+...+...|++++|...+....... +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445555555666666666666666665443222 12355555566666666666666666665542 223344444444
Q ss_pred HHH
Q 007384 348 ACS 350 (605)
Q Consensus 348 ~~~ 350 (605)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.12 E-value=0.11 Score=48.30 Aligned_cols=55 Identities=9% Similarity=-0.006 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007384 345 LMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (605)
+...|.+.|.+..|..-|+.+.+. +.+........++.+|...|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444455566666666655555542 1111223344455555555555555554443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.10 E-value=0.15 Score=47.36 Aligned_cols=177 Identities=9% Similarity=-0.018 Sum_probs=103.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (605)
....+.+.|++++|.+.|+.+.... +.+.... -.++.++.+.+++++|...+++..+..+.....-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556777888888887777654 3333332 34566777788888888888877765443223333333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007384 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (605)
Q Consensus 317 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (605)
.+ + ...|...|+. ++.-|-...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 10 1 1223333333 333333334445555544444321 0111
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
--.+..-|.+.|.+.-|+.-|+.+.+. +.+........+..+|...|..++|......+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124556688999999999999998874 222345567788899999999999988776554
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.061 Score=51.46 Aligned_cols=133 Identities=10% Similarity=0.139 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----CC
Q 007384 341 SYSSLMGACSNA-KNWQKALELYEHMKSI----KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-----PN 408 (605)
Q Consensus 341 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~ 408 (605)
.+..+...|... |++++|.+.|++..+. + .+. ..++..+...+.+.|++++|+++|++....-.. .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344555667777 8888888888877642 2 111 245667778899999999999999998764222 22
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhhHHHHHhhhhhhhhccCCCc
Q 007384 409 TI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPN--LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476 (605)
Q Consensus 409 ~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~--~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~ 476 (605)
.. .|...+-.+...||+..|...+++.... ++..+ ......||.+|-. .....+.+++..|+...+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~--~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE--GDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT--T-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHcccCc
Confidence 22 2334444667789999999999998753 33333 2344555665432 012224455566665544
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.06 E-value=0.028 Score=49.25 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666666554321111 23455555555555666666555555543
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.05 E-value=0.012 Score=51.43 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=26.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
|..+...+...|++++|...|++.............++..+...+...|++++|...++.....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444444455555555544443221000001123444444445555555555555444443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.042 Score=44.26 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=24.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (605)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555554444322 12233333444445555555555544443
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.17 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=12.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
+..+...+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.95 E-value=0.0034 Score=45.03 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.|++++|..+|+.+.+.. |-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555544432 334444444555555555555555555554443
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.051 Score=50.41 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=52.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCCC-HHH
Q 007384 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCPN-TIT 411 (605)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~-~~t 411 (605)
+-|...|-.|...|.+.|++..|..-|.+..+.. .+|...+..+..++.... ...++..+|+++... .|+ ..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4455566666666666666666666666555542 334444444444433221 234555666665553 343 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 412 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
..-|...+...|++.+|...|+.|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444555666666666666666665
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.84 E-value=0.0055 Score=43.50 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
..+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555443 22344555555555555555555555555544
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.83 E-value=0.063 Score=43.29 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=23.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMN 224 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (605)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|+.++|..++++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444455555555555444443322 1223333444444455555555554444
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.075 Score=49.34 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhHH
Q 007384 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAFEILQEAKNQGISVGIISY 342 (605)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 342 (605)
+.|...|-.|...|...|+++.|..-|....+...+ +...+..+..++.... ...++..+|+++.+.+ +.|+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 444555555555555555555555555554443221 3333333333322211 1334445555554443 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 343 SSLMGACSNAKNWQKALELYEHMKSI 368 (605)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (605)
.-|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44444445555555555555555443
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.67 E-value=0.0084 Score=42.53 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=26.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (605)
.+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555443 22444445555555555555555555555443
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.66 E-value=0.008 Score=43.24 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007384 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKD-DVEVGLMLLSQAKE 437 (605)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~ 437 (605)
..+|..+...+...|++++|+..|++..+. .| +...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445566666666666666666666666553 34 3445555556666666 56666666666554
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.61 E-value=0.39 Score=41.16 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcC-CCCCCHHHH
Q 007384 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITI 237 (605)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 237 (605)
-|++...-.|..+..+.|+..+|...|++...--+.-|....-.+.++....++...|...++.+.+-.. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 3555555556666666666666666666665544444555555666666666666666666666544211 11223 22
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007384 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (605)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (605)
-.+...+...|...+|+.-|+..... -|+...-.-....+.+.|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 33445556666666666666665554 233333223333344555444443
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.58 E-value=0.78 Score=44.37 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=66.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (605)
+.+..|.-+...|+...|.++-.+. . .||...|-..+.+++..+++++-.++-.. +-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566677776666664443 2 35777777777777777777766654321 123466777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007384 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (605)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (605)
+.|+..+|.....++. +..-+..|.+.|++.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777776665521 1345566677777777766543
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.54 E-value=0.84 Score=44.18 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (605)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (605)
+.+..+.-+...|+...|.++-.+. . .|+...|..-+.+|+..+++++-..+... +.+++-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3455566667778887777775544 2 46788888888999999998877765332 234577888888888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (605)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 432 (605)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 999988888887662 2 1 33445566777777776543
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.52 E-value=0.4 Score=43.21 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007384 346 MGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (605)
...|.+.|.+..|..-++.+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.52 E-value=0.84 Score=43.95 Aligned_cols=278 Identities=15% Similarity=0.116 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhhC---CCCChhhHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHH
Q 007384 75 KAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMF 147 (605)
Q Consensus 75 ~~~~~A~~~~~~~---~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~ 147 (605)
|+-..|.++-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 5555666555432 23344334444433 3456999999999999974 22222 2233444445778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHhc---cCCHHHHHHHHH
Q 007384 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVV--FNALITACGQ---SGAVDRAFDVLA 221 (605)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~~---~g~~~~a~~~~~ 221 (605)
..-+..-..- +--...+.+++...+..|+++.|+++.+.-+... +.++..- -..|+.+-.. ..+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8887766542 2335678889999999999999999998765532 3444332 2233333221 134555555554
Q ss_pred HHhhCcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CC
Q 007384 222 EMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KG 299 (605)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~ 299 (605)
+..+ +.||.+-- ..-..++.+.|+..++-.+++.+-+.. |.+..+...+ +.+.|+. ++.-++...+ ..
T Consensus 254 ~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 254 EANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 4443 34553322 223577889999999999999998875 3444443332 3455543 3333332221 11
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 007384 300 VIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSI 368 (605)
Q Consensus 300 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 368 (605)
++| +......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 233 4556667777888889998888776666554 5777788777776654 49999999999988874
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.47 E-value=0.015 Score=41.80 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 154 (605)
.+|..+...+...|++++|+..|+...+.. +.+...|..+..+|...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 334444444444444444444444444432 223444444444444444 3444444444443
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.45 E-value=0.47 Score=42.79 Aligned_cols=168 Identities=11% Similarity=0.055 Sum_probs=88.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 241 MKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
...+...|++++|.+.|+.+..... +-...+.-.++.++.+.|++++|...+++..+.-+.....-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566777777777777765421 11234455666777777777777777777665433222222222222221111
Q ss_pred -------------CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 319 -------------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (605)
Q Consensus 319 -------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (605)
...+|.. .+..++.-|-......+|...+..+.+. . ...--.+..-|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHH
Confidence 1112222 3444455555555556666555555421 0 111123556788
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 007384 386 DGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGL 429 (605)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~ 429 (605)
+.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 899999999999888875 3443 34567778888888877443
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.41 E-value=0.057 Score=50.54 Aligned_cols=50 Identities=20% Similarity=0.065 Sum_probs=21.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHh
Q 007384 173 AKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMN 224 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (605)
.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|..+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444443 1221 233334444444444444444444444
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=1.1 Score=43.62 Aligned_cols=257 Identities=12% Similarity=0.028 Sum_probs=113.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChH
Q 007384 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~ 109 (605)
|.+.+..++.+|+..+...++.. |.++.++..-+..+...+++++|.--.++-. +.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 45567788888888888888776 6666665554444555566666554433211 111111111122222222222
Q ss_pred HHHHHHH---------------HHHHcC-CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 007384 110 GAFQVLR---------------LVQEAG-LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID-- 170 (605)
Q Consensus 110 ~A~~~~~---------------~m~~~g-~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~-- 170 (605)
+|.+.++ ...... -+|...+|..+ ..++.-.|+.++|.+.--...+.. ..+ .+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhccc
Confidence 3322222 111111 11222333322 233445566666666555555432 112 2222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHhccCCHHHHHHHHHHHhhCc-CCCCCCHHH
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVF-------------NALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------------~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 236 (605)
++--.++.+.|...|++.+..+ |+-..- ..-.+-..+.|.+..|.+.+.+..... ....++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 2233556666666666665542 222211 111122344555666666655554321 112233333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
|........+.|+..+|+.--+...+.+ +.-...|..-..++.-.++|++|.+-|+...+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555555555555554433 11111122222333344555555555554443
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.38 E-value=0.066 Score=50.15 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHH
Q 007384 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFN 201 (605)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~ 201 (605)
..|...+..+.+.|++++|...|+.+++. .|+. .++..+...|...|++++|...|+.+.+.- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445567777777777777665 3332 356666677777777777777777776541 011233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhC
Q 007384 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (605)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~ 226 (605)
.+...+...|+.++|..+|+.+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666677777777777777653
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.35 E-value=0.086 Score=50.64 Aligned_cols=264 Identities=15% Similarity=0.064 Sum_probs=145.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHH--Hc--CC-CCCHHHHHHHHHHH
Q 007384 102 CASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMV--NA--GI-EPNVHTYGALIDGC 172 (605)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~~--g~-~~~~~~~~~li~~~ 172 (605)
+++.|+......+|+..++.| .-|.. .|..|.++|.-.+++++|++....=+ .+ |- .-...+...|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 678888888888888888777 33433 45666677777778888877653311 10 00 00111222333444
Q ss_pred HhcCCHHHHHHHHHH----HHhCCC-CCCHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHhhCc
Q 007384 173 AKAGQVAKAFGAYGI----MRSKNV-KPDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAEV 227 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~----m~~~g~-~p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~~~ 227 (605)
--.|.+++|+-.-.+ ..+.|- ......+..|...|...|+ ++.|.++|.+-.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445666665433221 111110 0112334445555544433 223333433211100
Q ss_pred --CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH---
Q 007384 228 --HP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT--- 296 (605)
Q Consensus 228 --~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 296 (605)
.+ --.--..|..|.+.|.-.|+++.|+...+.-.. .|- ......+..+.+++.-.|+++.|.+.|+.-.
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 00 001112455555666667788888877654332 121 1123467778888888899999888887643
Q ss_pred -HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 297 -KKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 297 -~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
+.|- .......-++...|.-..++.+|+.++.+-..- ...-....+.+|..+|...|..++|....+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2222 113345566777777777888888888764321 112245677788888888888888887766554
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=96.23 E-value=0.086 Score=44.49 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=50.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChHHH
Q 007384 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A 111 (605)
+...|++++|..+|.-+...+ +++..++.-++..+...+++++|+..|... ...|+..+-.....+...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 336677777777777766666 566666666666666666677777666532 223333344445556666666666
Q ss_pred HHHHHHHHH
Q 007384 112 FQVLRLVQE 120 (605)
Q Consensus 112 ~~~~~~m~~ 120 (605)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666654
No 204
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.31 Score=41.15 Aligned_cols=123 Identities=11% Similarity=0.119 Sum_probs=83.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CChhhH---HHHHH--HHHhCC
Q 007384 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTF---NMLMS--VCASSK 106 (605)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~ll~--~~~~~~ 106 (605)
.|.+.+..++|+..|.++.+.|.-............+..+.|+...|...|+.+.. +.+... .-|-. .+..+|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 35588999999999999999886555665555666667778889999999988642 111111 11111 255677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.++......+-+-..+-+.-...-..|.-+..+.|++..|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 88877777776655443334445556666667888888888888887654
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.13 E-value=0.033 Score=40.50 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444432 22333344444444444444444444444443
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.12 E-value=0.76 Score=39.44 Aligned_cols=101 Identities=14% Similarity=0.031 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhHHHHH
Q 007384 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSL 345 (605)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 345 (605)
|+......|..+....|+..+|...|.+...--..-|......+..+....+++..|...++.+.+.+.. -++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3333344444555555555555555554443323334444444444444445555555554444443210 011122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007384 346 MGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (605)
.+.|...|...+|+.-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3444444444444444444443
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.10 E-value=0.13 Score=49.51 Aligned_cols=265 Identities=18% Similarity=0.063 Sum_probs=148.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--Hh--CCCC-CCHHHHHHHHH
Q 007384 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIM--RS--KNVK-PDRVVFNALIT 205 (605)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~-p~~~~~~~li~ 205 (605)
.-+|+.|+......+|+..++.|.+ |. .+|..|.++|.-.+++++|++....= .. .|-+ -...+...|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578999999999999999998733 43 34667777777788888888764321 10 0100 01122223333
Q ss_pred HHhccCCHHHHHHHHHHHh----hCcCCCCCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 007384 206 ACGQSGAVDRAFDVLAEMN----AEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (605)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~ 261 (605)
.+--.|.+++|.-.-.+-. +-+..+ .....+-.+...|...|+ ++.|.+.|..-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4444455666554322111 000001 112233345555554432 223333332211
Q ss_pred h----cCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 262 K----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (605)
Q Consensus 262 ~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (605)
+ .|- -..-..|..|.+.|.-.|+++.|+...+.-+ +-|-+ .....++.+..++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 110 0011345666666677788888877665422 22211 123456677777888888888888877643
Q ss_pred HC----C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 332 NQ----G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 332 ~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
.. | -.....+..+|...|.-..++++|+..+.+-... ...-...++.+|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22 2 1234556667888888888888888877653321 012235677788888888888888887766543
No 208
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.07 E-value=0.42 Score=48.49 Aligned_cols=169 Identities=12% Similarity=0.165 Sum_probs=109.2
Q ss_pred chhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 007384 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (605)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 103 (605)
.+..+..-|...+-+|+++++.++.+.-.-.. .-+......+++++.+.|..+.|+.+-. |+ ..-.....
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 46677788888889999999877775111111 1123445667778888888888887632 22 23344567
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (605)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (605)
+.|+++.|.++.+. ..+...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+...+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 78888888877543 34677899999999999999999888887653 6677777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007384 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (605)
+-+.....| -++....++.-.|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 877777665 2566666667778888888777654
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.051 Score=46.09 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHT 164 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 164 (605)
...++..+...|++++|..+.+.+.... |.|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555666667777777776666654 55666666777777777777777766666542 355665544
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.00 E-value=0.2 Score=40.82 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc
Q 007384 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (605)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (605)
...|+..+..+++.+|+..|++..|+++.+..... .+++.+..+|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHh
Confidence 45677777777777777777777777777776654 45666677777776554433
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.049 Score=46.16 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVF 200 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 200 (605)
+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556667777888888888888887764 45677888888888888888888888877642 3777776553
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.95 E-value=0.054 Score=39.34 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.|.+.+++++|..+++.+...+ |.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555443 334444444555555555555555555555443
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.90 E-value=0.89 Score=46.61 Aligned_cols=214 Identities=13% Similarity=0.157 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 007384 125 ADCKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNV 193 (605)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 193 (605)
|..+.+.+=+..|...|.+++|.++ ++.+... ..+..-++..=.+|.+..+ +-+...-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 3344455555667777777777544 2222111 1223334555556666554 3345555677888887
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH------------HHHH
Q 007384 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIH 261 (605)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------------~~~~ 261 (605)
.|+.... ...++-.|.+.+|-++|.+--. + +..+.+|.....++.|.++. ++-.
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~-----e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKRSGH-----E------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHHcCc-----h------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 7876643 3456667888888888876422 1 12344444444555555444 2211
Q ss_pred h--cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH-----H-HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 262 K--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 262 ~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m-~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
+ ++++.. .+-...+...|+.++|..+.-+ | .+.+- ..+..+...+...+-+...+..|-++|..|
T Consensus 698 ~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 698 DWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 011110 1223444556666666554321 1 11111 113344445554555566677777777766
Q ss_pred HHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
-.. .++++.....+++.+|..+-++.++
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 432 3566777778888888887777665
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.86 E-value=1.1 Score=45.91 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=12.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 007384 240 LMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
++......+++++|.++-+..++
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcc
Confidence 44555555666666555555443
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.76 E-value=0.21 Score=40.72 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHh-------------hCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 197 RVVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
..++..++.++++.|+++...++++..- ....+..|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455556666666666666555554431 111233455555555555555555555555555444332
Q ss_pred -CCCCCHHHHHHHHH
Q 007384 264 -NIKGTPEVYTIAIN 277 (605)
Q Consensus 264 -~~~~~~~~~~~li~ 277 (605)
+++.+...|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33333444444443
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=95.71 E-value=1 Score=38.17 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=64.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 007384 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (605)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (605)
..-+.+.|++++|..+|.-+...+.. +..-+..|..++-..+++++|...|......+ ..|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34456778888888888877765544 55556666667777788888888887766554 34455555677788888888
Q ss_pred HHHHHHHHHHHh
Q 007384 356 QKALELYEHMKS 367 (605)
Q Consensus 356 ~~A~~~~~~m~~ 367 (605)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.71 E-value=3.2 Score=43.25 Aligned_cols=360 Identities=12% Similarity=0.078 Sum_probs=158.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC-CChhhHHHHH----------HHHH
Q 007384 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLM----------SVCA 103 (605)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll----------~~~~ 103 (605)
|+..=.+++|.+..+ .+ +...++.+++.+....-+++.|...|-+..+ +....-..|- ..-+
T Consensus 673 Lve~vgledA~qfiE----dn---PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 673 LVEAVGLEDAIQFIE----DN---PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA 745 (1189)
T ss_pred HHHHhchHHHHHHHh----cC---CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh
Confidence 343444566665544 22 3455667777777776778888877755431 1111111111 1122
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007384 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAF 182 (605)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~ 182 (605)
--|++++|.+++-++-++.+ .|..+.+.|++-...++++.--... -+.-...|+.+...++....+++|.
T Consensus 746 ~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888877765432 2444455555554444433210000 0001223444444444444444444
Q ss_pred HHHHHH-------------------H--hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHH
Q 007384 183 GAYGIM-------------------R--SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (605)
Q Consensus 183 ~~~~~m-------------------~--~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll 241 (605)
+.|..- . ...++-+....-.+..++.+.|..++|.+.|-+.. .|. ..+
T Consensus 817 ~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s------~pk-----aAv 885 (1189)
T KOG2041|consen 817 KYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS------LPK-----AAV 885 (1189)
T ss_pred HHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc------CcH-----HHH
Confidence 433321 1 11123344445556666666666666666654421 121 234
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHH--------------HHHHHHHHccCCHHHHHHHHHHHHH----CCCCCC
Q 007384 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVY--------------TIAINCCSQTGDWEFACSVYDDMTK----KGVIPD 303 (605)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~ 303 (605)
..|...+++.+|.++-+...-.. ..+. ---|..+-+.|++-+|-+++.+|-+ ++.+|-
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~q----v~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~l 961 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQ----VQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYL 961 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHH
Confidence 45555666666665544322111 1110 1123344455555555555555533 222211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (605)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (605)
..--.-++.+.. ..+..++.+-.+....+|...+... +...|-+.++.++.+..-+ ......|..|..-
T Consensus 962 r~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQr 1030 (1189)
T KOG2041|consen 962 RLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQR 1030 (1189)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHH
Confidence 110011111110 1112222222233333332211110 1122222233333222211 1122334444455
Q ss_pred HHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 384 LCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
....|..+.|++.--.+.+ ..+-|....|+.+.-+.+....+.-.-+.|-++.
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 6677889998876544433 2356777788877665555555554444444443
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.71 E-value=0.089 Score=47.95 Aligned_cols=123 Identities=18% Similarity=0.244 Sum_probs=70.3
Q ss_pred HHHhhCC--CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007384 82 RFFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (605)
Q Consensus 82 ~~~~~~~--~~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (605)
+.|..++ ..|-.+|-+.+..+.. .+..+-....++.|.+-|+..|..+|+.|++.+-+-.-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------- 123 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------- 123 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----------
Confidence 3444444 4455566666655443 244555556667777777777777777777665332211
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHH
Q 007384 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEM 223 (605)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~ 223 (605)
|.. .+....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 124 -----P~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 124 -----PQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred -----cHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 110 1111111111 23345788888888888888888888888888777653 3344444444
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.34 E-value=3.2 Score=40.79 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 407 PNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 407 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
.|-..+.+++.++.-.|++++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45566778888888888888888888888874
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=2.5 Score=39.48 Aligned_cols=142 Identities=15% Similarity=0.078 Sum_probs=62.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007384 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (605)
Q Consensus 138 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (605)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34555555555555555442 22334444555555555666656555555543311111111112222333333333333
Q ss_pred HHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCC
Q 007384 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGD 284 (605)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 284 (605)
.+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+++. -.+...-..|+..+.--|.
T Consensus 224 ~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 224 DLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333221 22444444555555666666666555544444321 1233455555555555553
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=4.7 Score=42.49 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=16.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRL 117 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~ 117 (605)
...+|..+.+-....|+++-|..+++.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 445566666666666777766666543
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=5.1 Score=42.83 Aligned_cols=174 Identities=12% Similarity=0.101 Sum_probs=94.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC-CCCChhhHHHHHHHHHhCCChHHH
Q 007384 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-PNPTLSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A 111 (605)
+.|++..-++-|+.+-..-.... .....++...+..+.+.|++++|...|-+. .--++ ..++.-|....+..+-
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHH
Confidence 34555556666666554332211 223456666667777788999998877553 21111 2345556666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (605)
-..++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+-+.+-.++|..+-.+...
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 7777888888744 44555678889999988877666655443 2211 11123444455555555555544333321
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007384 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (605)
+......++ -..+++++|++.+..+
T Consensus 492 ----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 ----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 222223222 2335566666555443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.11 E-value=0.076 Score=39.20 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 375 STMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.+++.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555666666666666666554321 011 11 33455555666666666666666665543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.07 E-value=0.071 Score=39.34 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
.+++.+...|...|++++|...|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666666666666666666655431 10 111 3455666666667777777776666643
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=1.1 Score=41.59 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC----hhhHHHHHHHHHhCCChH
Q 007384 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT----LSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~ 109 (605)
.++..|++.+|..+|....... +.+......+++.+...|+.+.|..+++.+|... ......-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4456677777777777776655 4455555556666666667777777777665211 111112233333333444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAG 176 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g 176 (605)
+..++-+..-.. +-|...-..+...+...|+.++|.+.+-.+.+.. -.-|...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333333321 3355555556666666666666665555544331 1223344444554444444
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.98 E-value=3.8 Score=39.73 Aligned_cols=149 Identities=17% Similarity=0.073 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 285 WEFACSVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (605)
Q Consensus 285 ~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (605)
...|...-.+..+ +.||.+-- ..-..++.+.|+..++-.+++.+.+....|+ .+ ++..+.+.|+. +..-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHH
Confidence 4444444443333 34443322 2234577888999999999999988754443 32 23345566653 222222
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCC
Q 007384 364 HMKSI-KL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGV 440 (605)
Q Consensus 364 ~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~ 440 (605)
+.... .+ +.+..+-..+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++++.+.+..+..-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 22210 11 33466667777788888998888776666655 47888888888877654 5999999999999988655
Q ss_pred CCC
Q 007384 441 IPN 443 (605)
Q Consensus 441 ~p~ 443 (605)
+|+
T Consensus 395 dPa 397 (531)
T COG3898 395 DPA 397 (531)
T ss_pred CCc
Confidence 554
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.97 E-value=5.1 Score=41.19 Aligned_cols=404 Identities=11% Similarity=0.107 Sum_probs=203.3
Q ss_pred chhhhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHH
Q 007384 24 DVSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFN 96 (605)
Q Consensus 24 ~~~~~~~~~~~l~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 96 (605)
........|..++..+ ..+.++.+++.++..- |.-..++..++..-.+.|..+.+.++|++.. +-++..|.
T Consensus 40 ~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~ 117 (577)
T KOG1258|consen 40 NDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWL 117 (577)
T ss_pred cchhcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3355666788888433 3456666777777554 7777777777777788899999999999754 45666777
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 97 MLMSVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 97 ~ll~~~~-~~~~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
..+..+. ..|+.+.....|+..... |.. .....|...|..-..++++.....+++..++. ....++....-|.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFK 193 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHH
Confidence 7666543 457788888888877653 211 24556777888778888999999999998863 2333343333332
Q ss_pred h---c------CCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHhhCcCCCCCCHHHHHH
Q 007384 174 K---A------GQVAKAFGAYGIMRSK---N-VKPDRVVFNALITACG-QSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (605)
Q Consensus 174 ~---~------g~~~~A~~~~~~m~~~---g-~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (605)
+ . ...+++.++-...... + ..+....+..-+.--. ..+..+++.....+.. ..
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-------------~~ 260 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-------------SI 260 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-------------HH
Confidence 2 1 1223333222221110 0 0001111111111100 0111111111111100 00
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007384 240 LMKACANAGQVDRAREVYKMIHKY-------NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 312 (605)
--.++-..-........|+.-.++ -.+++..+|...+..-.+.|+++.+.-+|+...-.-.. =...|-..+.
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~ 339 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYAR 339 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHH
Confidence 011111222222233333332221 11234566777777777777777777777765432111 1122322333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCC
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGIS--VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQ 389 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~ 389 (605)
-....|+.+.|..++....+-..+ |....+.+.+ .-..|++..|..+++.+.+.- |+. ..-..-+....+.|.
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcc
Confidence 333337777776666655544322 2233333322 334567777777777776542 442 222223344555666
Q ss_pred hhHHH---HHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 390 LPKTM---EVLSDMKSLGLCPNTITYSILLV-----ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 390 ~~~A~---~~~~~m~~~g~~p~~~t~~~ll~-----~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (605)
.+.+. +++...... .-+..+...+.- .+.-.++.+.|..++.++.+. ..++...|..+++.+
T Consensus 416 ~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 416 LEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred hhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 66665 333332221 112222222221 123356677777777777764 455556666666654
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.89 E-value=4.3 Score=39.92 Aligned_cols=73 Identities=8% Similarity=0.162 Sum_probs=38.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 101 VCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAK---SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
.|-...+++...++.+.+...- +.-....-....-++.+ .|+.++|++++..+....-.++..++..+.+.|-
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 4666666677777766665431 11112222223334444 5666777777666444444566666666666553
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.89 E-value=0.23 Score=45.44 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007384 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (605)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 425 (605)
-+=+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 345788899999999999999999999999887753
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.78 E-value=1.1 Score=45.53 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=80.1
Q ss_pred HHhCCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007384 102 CASSKDSEGAFQVLR--LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (605)
Q Consensus 102 ~~~~~~~~~A~~~~~--~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (605)
..-.++++.+.++.+ .+. ..+ +..-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344556666555543 111 111 13446666666667777777766543321 2233445667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007384 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (605)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (605)
.|.++-++. .+...|..|.....+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHH
Confidence 776553322 255677777777777777777777776542 144455566667776666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007384 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (605)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (605)
....|- ++....++.-.|+.+++.+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 665552 44444555556666666666543
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.77 E-value=0.41 Score=47.51 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
+...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555566666666666666666665553 2332 2355566666666666666666666554
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.70 E-value=0.17 Score=50.06 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
+.+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|.+.|++++|.+.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999887 46774 35899999999999999999999999985
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.46 E-value=2.5 Score=35.31 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=15.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007384 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (605)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (605)
..+...+........++.+...+ ..+...++.++..|++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 33333334444444444444333 1333344444444443
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.68 Score=44.96 Aligned_cols=139 Identities=17% Similarity=0.084 Sum_probs=88.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 007384 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 111 (605)
-|.+.+.|++..|...|+.....=. ..... ....-..+. ..-..+++.+...|.+.+++..|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~--~~~~~---------~~ee~~~~~-------~~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE--YRRSF---------DEEEQKKAE-------ALKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh--ccccC---------CHHHHHHHH-------HHHHHHhhHHHHHHHhhhhHHHH
Confidence 4567789999999999988664210 00000 000000010 01123455566678888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 007384 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRS 190 (605)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~ 190 (605)
++.-+..+..+ ++|+-..-.-..+|...|+++.|+..|+++.+.. +-|..+-+-|+.+--+..... ...++|..|..
T Consensus 277 i~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 277 IESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888776 7777777778888888888999998888888763 234445555555555544443 34677777754
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=94.26 E-value=4.4 Score=40.64 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 250 VDRAREVYKMIHKY-NIKG-TPEVYTIAINCCSQ---------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 250 ~~~A~~~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
.+.|..+|.+.... .+.| ....|..+..++.. .....+|.++-+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45677777777621 1222 23344333332221 12233455555555555443 5555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
+++.|...|++....+ +....+|......+.-+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5666666666555544 22333444444444445666666666555443
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.05 E-value=2.9 Score=43.20 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=113.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHhc----cCCHHHH
Q 007384 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPD-----RVVFNALITACGQ----SGAVDRA 216 (605)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~a 216 (605)
.-+|.-+... +|| ....++....-.|+-+.+++.+.+..+.+ +.-. ...|+.++..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555543 133 35567777777888888888888766542 2211 1234445544443 4568899
Q ss_pred HHHHHHHhhCcCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007384 217 FDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACSVY 292 (605)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 292 (605)
.+++..+... -|+...|... .+.+...|++++|.+.|+...... . ......+--+.-.+.-..+|++|.+.|
T Consensus 253 ~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 9999998864 4665555433 466778899999999999755321 1 112344555666788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007384 293 DDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (605)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (605)
..+.+.+-- +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999886432 44455544443 3556777 888999888754
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=1.5 Score=41.43 Aligned_cols=119 Identities=9% Similarity=-0.044 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC-cCCCCCCHHHHHHHHHHHHhcCChHH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDR 252 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (605)
..|+..+|-..++++.+. .+.|..++...-++|.-.|+.+.-...++++... ..+.+-..++-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356666666666776654 3556667777777777777777766666666532 11111112222333334456667777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007384 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (605)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (605)
|++.-++..+.+ +.|.-+-.+....+-.+|++.++.+...+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 777766666665 44555555666666666666666665543
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=1.2 Score=43.24 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (605)
.+++.+..+|.+.+++..|++...+.+..+.. |.-..-.-..+|...|+++.|+..|+.+.+.. +.|..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45666677777777777777777777766543 55555556667777777777777777777764 33444444444444
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 007384 350 SNAKNWQ-KALELYEHMK 366 (605)
Q Consensus 350 ~~~g~~~-~A~~~~~~m~ 366 (605)
.+..... ...++|..|.
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 4433333 3355666664
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.90 E-value=2.9 Score=33.85 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (605)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (605)
+...+......|+-++-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444455555555555555555555432 4555555556666666666666666666555544
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.58 E-value=2.6 Score=33.99 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=64.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDD 424 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~ 424 (605)
+.+..|+++.|++.|.+....- +.+...||.-..++.-.|+.++|++-+++..+..-.-+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4667888888888888877642 456778888888888888888888888887663211121 234444455677888
Q ss_pred HHHHHHHHHHHHHCC
Q 007384 425 VEVGLMLLSQAKEDG 439 (605)
Q Consensus 425 ~~~a~~~~~~~~~~g 439 (605)
-+.|+.-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888877655
No 241
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.57 E-value=8.5 Score=38.24 Aligned_cols=420 Identities=13% Similarity=0.133 Sum_probs=209.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHHHHH---HhhCCCCChhhHHHHHHH--HHhCCC
Q 007384 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSV--CASSKD 107 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~ll~~--~~~~~~ 107 (605)
+++++.+|..+|.++.+.-... ....+.+.++.++-. ++++.-... +++-.+ ...|-.+..+ +-+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 8999999999999987653211 112233344443332 233333322 222222 2334445443 457788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 007384 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (605)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li 169 (605)
+++|.+.+..-..+ +..| |-..-+..++++...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999988766554 2222 2222356778888999999999998888754 3347888999877
Q ss_pred HHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHhhC
Q 007384 170 DGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE 226 (605)
Q Consensus 170 ~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~ 226 (605)
-+++++= . ++.+.-..++|... .+.|.......++.-..-. .+..--++++..-..
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~- 253 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN- 253 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-
Confidence 6666531 1 22333333333321 1233333333333332211 122223333333322
Q ss_pred cCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 007384 227 VHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIK----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (605)
Q Consensus 227 ~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (605)
.-+.|+. .+...+...+.+ +.+++..+-+.+....+. .-..++..++....+.++...|.+.+.-+.-..+.
T Consensus 254 -~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 -FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred -hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 2334542 223334443333 444444444333222111 01356777778888888887777777655433221
Q ss_pred --------CCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCC
Q 007384 302 --------PDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKN-WQKALELYEHMKSIK 369 (605)
Q Consensus 302 --------p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~ 369 (605)
....+...++. -=...-+...-+.++......++.-. +....--..-+.+.|. -++|..+++.+.+..
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft 410 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT 410 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Confidence 11222222221 00011122223334444443332110 1111122334555555 677888888777643
Q ss_pred CCCCHHHHHHHH----HHHHc---CCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 007384 370 LKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPN----TITYSILLVA--CERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 370 ~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~--~~~~g~~~~a~~~~~~~~ 436 (605)
+-|..+-|.+. .+|.+ ...+.+-+.+-.-..+.|+.|- ...-+.|.+| +..+|++.++.-.-.-+.
T Consensus 411 -~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 411 -NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 23443333322 22322 2234444444444556777763 3334444443 566788888766655555
Q ss_pred HCCCCCCHHHHHHHHHHHH---hhHHHHHhhhhh
Q 007384 437 EDGVIPNLVMFKCIIGMCS---RRYEKARTLNEH 467 (605)
Q Consensus 437 ~~g~~p~~~~~~~li~~~~---~~~~~a~~~~~~ 467 (605)
+ +.|++.+|. |+.+|. ++|++|......
T Consensus 490 ~--iaPS~~~~R-LlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 490 K--IAPSPQAYR-LLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred H--hCCcHHHHH-HHHHHHHHHhhHHHHHHHHHh
Confidence 5 778777776 444443 367777665544
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.54 E-value=8.5 Score=38.15 Aligned_cols=146 Identities=10% Similarity=0.133 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007384 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (605)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (605)
...|...+.+-.+...++.|..+|-+..+.+ ..+++.++++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567778888888888999999999999988 5678889999998775 57778899999865543 3554443 4566
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007384 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (605)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (605)
.-+..-++-+.|..+|+...+. +..+ ...|..+|+--+.-|+...+..+-+++.+ +-|...+-....+.|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 6777888999999999965543 3333 56899999999999999999988888887 4555555444555554
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.48 E-value=6.3 Score=39.74 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHH
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSIL 415 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 415 (605)
..+-..|..++.+.|+.++|.+.|++|.+.... .+......|+.++...+.+.++..++.+-.+... |.. ..|+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaA 337 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAA 337 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHH
Confidence 333445666677778888888888877653211 1234556677888888888888888777654322 332 345554
Q ss_pred H
Q 007384 416 L 416 (605)
Q Consensus 416 l 416 (605)
+
T Consensus 338 L 338 (539)
T PF04184_consen 338 L 338 (539)
T ss_pred H
Confidence 4
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.38 E-value=1.4 Score=40.70 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=38.6
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChH
Q 007384 174 KAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (605)
+.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+..+..+.-...+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34445555555555544310 0011223334455555555555555555544432111112233334444444555555
Q ss_pred HHHHHHHHHHhc
Q 007384 252 RAREVYKMIHKY 263 (605)
Q Consensus 252 ~A~~~~~~~~~~ 263 (605)
+|..+|+.+.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.36 E-value=5.9 Score=40.93 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHHHHH
Q 007384 35 LIRQGRISECIDLLEDM 51 (605)
Q Consensus 35 l~~~g~~~~A~~~~~~~ 51 (605)
|+=++++++|.++|+.-
T Consensus 6 lflnn~~~eAe~~l~~~ 22 (468)
T PF10300_consen 6 LFLNNRFKEAEELLSPR 22 (468)
T ss_pred HHHCCCHHHHHHHHHhc
Confidence 44577888888888843
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.35 E-value=4.1 Score=33.97 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (605)
++..+.+.+........++.+...+ +.+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4444444455555555555554444 23444555555555443
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=1.3 Score=40.75 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 007384 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAI 276 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li 276 (605)
.|+.-+. +.+.|++..|.+.|.......++-.-....+-.|..++...|++++|..+|..+.+.-- +.-+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554443 34556677777777766654322221222333466666777777777777766655421 11245555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 007384 277 NCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=93.32 E-value=5.4 Score=40.00 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhhCC---CCC---hhhHHHHHHHHH---------hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007384 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (605)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~ll~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (605)
...+.|+.+|.+.. +-| ...|..+...+. ......+|.++.+...+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 45677888887755 322 333333322211 1234556777788888776 7788888888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHH
Q 007384 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALITACGQSGAVDRA 216 (605)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a 216 (605)
.++++.|..+|++....+ +-...+|........-+|+.++|.+.+++..+. .|.. ......++.|+.. .+++|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 888999999999988764 223455665556667789999999999886655 3332 2333344566654 46667
Q ss_pred HHHHHH
Q 007384 217 FDVLAE 222 (605)
Q Consensus 217 ~~~~~~ 222 (605)
.+++-.
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 776644
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.23 E-value=3.8 Score=33.18 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007384 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (605)
.|.+++..++..+...+. +..-+|.+|--....-+.+-..++++.+-.. ..+.+- .-...++.+|++.|..
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDis~C-~NlKrVi~C~~~~n~~---- 85 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDISKC-GNLKRVIECYAKRNKL---- 85 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-GGG--S-THHHHHHHHHTT------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh-cCchhh-cchHHHHHHHHHhcch----
Confidence 466666666666665532 4455555555555555555666666555331 111100 0011122333322211
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
......-+..+.+.|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++-+++.+.-+.|
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 133344455566666666666666666542 23455666666666777777777777766666666
Q ss_pred C
Q 007384 335 I 335 (605)
Q Consensus 335 ~ 335 (605)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=2.7 Score=39.77 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=82.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCCHH
Q 007384 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVD 214 (605)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~ 214 (605)
..|+..+|-..++++.+.- +.|..+++-.=++|.-.|+.+.-...++++...- .+|...|. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566666666677766542 4466666666667777777777777777766441 23332222 2333445667777
Q ss_pred HHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCHHHHHHH
Q 007384 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSV 291 (605)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 291 (605)
+|.+.-++..+.. +-|...-.++...+-..|++.++.+...+-...--..+ ..-|=...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 7777776665431 33444555566666667777777766554332210000 01122222334445666666666
Q ss_pred HHH
Q 007384 292 YDD 294 (605)
Q Consensus 292 ~~~ 294 (605)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 654
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.01 E-value=6.3 Score=37.85 Aligned_cols=166 Identities=12% Similarity=0.034 Sum_probs=87.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CCCHHH
Q 007384 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI-----KGTPEV 271 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~ 271 (605)
|..+.+++-+..++.+++++-..-... +|..| --....++..++...+.++++++.|+...+.-. .....+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444444444444455555444333221 12222 112233355556666667777777776654311 112346
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFL-----SALIDFAGHAGKVEAAFEILQEAKN----QGISV- 337 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~- 337 (605)
+-.|-+.|.+..++++|.-...+..+ .++.--..-| -.+.-++...|++..|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777777777777777655544322 2222111112 2333456667777777766666543 23221
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 338 GIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.......+.+.|...|+.+.|+.-|++.-
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23445567778888888888877777653
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.97 E-value=2.6 Score=34.88 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 316 HAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.+++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444443310 11222333444444455555555555444444
No 253
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.90 E-value=9.1 Score=36.67 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCChhHHHHHHHHHHhcCC-
Q 007384 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AG----KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN- 354 (605)
Q Consensus 285 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 354 (605)
+++...+++.|.+.|+.-+..+|.+....... .. ...+|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555667777777776666555543322222 11 24567778888877642 2334445555433 2333
Q ss_pred ---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007384 355 ---WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLV 417 (605)
Q Consensus 355 ---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (605)
.+.+...|+.+.+.|+..+ ...+.+-+-++..... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3456666777776665544 2233333333332222 3467777888888888877666665543
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.81 E-value=4.3 Score=32.74 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=57.8
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQ 177 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~ 177 (605)
+.+..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++..+..-..... .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566777777777777766542 4567777777777777777777777777766542222222 22223334566677
Q ss_pred HHHHHHHHHHHHhCC
Q 007384 178 VAKAFGAYGIMRSKN 192 (605)
Q Consensus 178 ~~~A~~~~~~m~~~g 192 (605)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.80 E-value=11 Score=37.40 Aligned_cols=386 Identities=12% Similarity=0.091 Sum_probs=198.3
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007384 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (605)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 134 (605)
|.+..-+..++..+..++..++-+++++++..|-+ ..|..-+++-...+++.....+|.+.+... .+...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 66666667777778888888888888888776543 357766776666678888888888877653 3455666555
Q ss_pred HHHHhcCChh------HHHHHHHHHHH-cCCCC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCH
Q 007384 135 TTCAKSGKVD------AMFEVFHEMVN-AGIEP-NVHTYGALIDGCA---------KAGQVAKAFGAYGIMRSKNVKPDR 197 (605)
Q Consensus 135 ~~~~~~g~~~------~A~~~~~~m~~-~g~~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~ 197 (605)
+--.+....- ...+.|+-... .+++| +...|+..+..+- +..+++...+.|.+|....+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 5443333211 11233333332 23333 3334555444322 223345555666666543211101
Q ss_pred HHHH------HHHHHH-hc------cCCHHHHHHHHHHHhhCcCCCCC----CHHH-----------HHHHHHHHHhcC-
Q 007384 198 VVFN------ALITAC-GQ------SGAVDRAFDVLAEMNAEVHPVDP----DHIT-----------IGALMKACANAG- 248 (605)
Q Consensus 198 ~~~~------~li~~~-~~------~g~~~~a~~~~~~~~~~~~~~~~----~~~~-----------~~~ll~~~~~~g- 248 (605)
..|+ .=++-. ++ +--+..|.+.+++...-..|... +..+ |...|+--...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 1111 111110 00 11134455555554322112111 1111 222222111111
Q ss_pred ----C--hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------------HH---
Q 007384 249 ----Q--VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------------EV--- 305 (605)
Q Consensus 249 ----~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~--- 305 (605)
+ .....-+|+..... +.....+|--.-..+...++-+.|++....-.+. .|. ..
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~yel~nd~e~v~ 353 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEYYELVNDEEAVY 353 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHHHhhcccHHHHh
Confidence 1 11122223333222 2333455555555555666666666655443221 121 00
Q ss_pred -HHHHHHHHHHh---cCCHHHHHH------HHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH
Q 007384 306 -FLSALIDFAGH---AGKVEAAFE------ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTV 374 (605)
Q Consensus 306 -~~~~li~~~~~---~g~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~ 374 (605)
+|..++..+.+ .++.+.+.. ...+..-.....-..+|..+++.-.+..-++.|+.+|-+..+.+ +.+++
T Consensus 354 ~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 354 GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 11111111110 011111100 01111000001124567788888888888999999999999888 67889
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 007384 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCII 451 (605)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li 451 (605)
..+++++.-++. |+..-|..+|+--... -||...|. -.+.-+...++-..|+.+|+..+.. +..+ ..+|..+|
T Consensus 434 yi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi 509 (660)
T COG5107 434 YIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMI 509 (660)
T ss_pred eeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH
Confidence 999999987774 6788899999874442 46655544 5677778889999999999866543 2223 45677777
Q ss_pred H
Q 007384 452 G 452 (605)
Q Consensus 452 ~ 452 (605)
+
T Consensus 510 ~ 510 (660)
T COG5107 510 E 510 (660)
T ss_pred H
Confidence 5
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=7.6 Score=35.23 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 007384 237 IGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
+.-....|..+|.++.|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 444455566666666655555544
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.64 E-value=1.5 Score=40.99 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 203 (605)
++..++..+..+|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|++.|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455666666666677777666666654 44666677777777777777777766666644 3666666665554
Q ss_pred HHH
Q 007384 204 ITA 206 (605)
Q Consensus 204 i~~ 206 (605)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.47 E-value=0.55 Score=29.92 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 238 GALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
..+...|.+.|++++|.++|+++.+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.26 E-value=11 Score=35.97 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
+...++.+|...+..+ +|..+++.+..+ .+-+| .++..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655533 445555555432 12222 23333455555566666777777666654
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.17 E-value=0.56 Score=29.88 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 344 SLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
.+...|...|++++|.++|+++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.00 E-value=1.9 Score=40.36 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44455555555666666666666555543 3445556666666666666666666555544
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.96 E-value=5.2 Score=33.15 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 007384 240 LMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
++.+|.+.+++++|...+++..+.
T Consensus 53 l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 444444444444444444444443
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.78 E-value=26 Score=39.42 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=66.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (605)
|.-.++.--++|.+.+|+.++ .|+...+..+. ..+...+.+++|--.|...-+. .-.+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHH
Confidence 344444444555566655554 24444444443 3444556666666666543221 23456
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVS--TMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
+|..+|++.+|..+..++.. ..+.. +-..|+.-+...+++-+|-++..+...
T Consensus 974 a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 77778888888888777753 22322 225678888888998888888877654
No 264
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.75 E-value=13 Score=35.71 Aligned_cols=131 Identities=14% Similarity=0.258 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHhhCcCCC-CCCHHHHHHHHHHHHhcCC-
Q 007384 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SG----AVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (605)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~- 249 (605)
+++.+.+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++..+-+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777776665543222222 22 2456777888887653222 2344555555433 2222
Q ss_pred ---hHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007384 250 ---VDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (605)
Q Consensus 250 ---~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 310 (605)
.+.++.+|+.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24555666666665554432 222223222222211 33566666667766666655555444
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.72 E-value=5.6 Score=33.70 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (605)
+.++.+++..+++.+.-.. |....+...-...+...|++.+|+++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5666666666666666544 4444444444444555566666666666554
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.69 E-value=9.8 Score=34.30 Aligned_cols=199 Identities=16% Similarity=0.074 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~- 312 (605)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455555566666666666666655542 223334555555666666666677777776666543332 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 389 (605)
.+...|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777654221 1223334444444666777888888877777643 22 35667777777777778
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.++|...+...... .|+ ...+..+...+...+..+.+...+.+..+
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888777663 343 33444444444466667777777777766
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.52 E-value=11 Score=34.59 Aligned_cols=53 Identities=9% Similarity=0.037 Sum_probs=24.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHH
Q 007384 345 LMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLS 398 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~ 398 (605)
+.+-|.+.|.+..|..-++.|.+. .+-+. ...-.|..+|...|..++|...-.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 334455555555555555555543 11111 223334445555555555544433
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.50 E-value=24 Score=39.75 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=78.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCCHHHH
Q 007384 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV----FNALITACGQSGAVDRA 216 (605)
Q Consensus 141 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~a 216 (605)
++++.|+.-+.++. ...|.-.++.--++|.+.+|+.++. |+... |.+...-+.....+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 44555555444432 2234444444456667777766552 33333 33333444455666666
Q ss_pred HHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007384 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (605)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (605)
.-.|+..-+ ..-.+.+|..+|+|.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+-.
T Consensus 959 al~Ye~~Gk-----------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGK-----------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhcc-----------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 666655321 1224566667777777777666553321 0001122456666666777777766666554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (605)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (605)
.. ..-.+..+++...+++|..+-..
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 43 12223334445556666555443
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.41 E-value=18 Score=36.71 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007384 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALI 381 (605)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li 381 (605)
..+..++-+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+-.+...+.+ ..+|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 44555566778888888888888765322 2344566788888888888888888877654432222 34555543
No 270
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=3.1 Score=42.60 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=85.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 007384 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (605)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 107 (605)
.+.-|.+++-.|+++.|-.++..+++. .+..++++..++|-.++|+.+- ++||. -.....+.|+
T Consensus 589 ~vleyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d~-----rFelal~lgr 652 (794)
T KOG0276|consen 589 EVLEYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPDQ-----RFELALKLGR 652 (794)
T ss_pred HHHHHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChhh-----hhhhhhhcCc
Confidence 334455666667777766655544421 2233444455556556665431 11211 1122345667
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (605)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (605)
++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 653 l~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 653 LDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 777766655432 445577777777777777777777665542 44566666666666555555444
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007384 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (605)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (605)
..+.|. .|.-..+|...|+++++.+++..
T Consensus 718 ~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 444442 22233345566777777666654
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.93 E-value=9.4 Score=32.67 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGAL 168 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l 168 (605)
....|...++ +++.+..++|+.-|..+.+.|...-++ ..-.........|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344544444 466778888888888888877543222 22333445667788888888888877653233222 11111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 169 --IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 169 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
.-.+..+|.++......+-+...+-+--...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 113456777777777776666554333333445566666778888888888887765
No 272
>PRK09687 putative lyase; Provisional
Probab=90.90 E-value=15 Score=34.96 Aligned_cols=235 Identities=14% Similarity=0.051 Sum_probs=113.7
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHH
Q 007384 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNVH 163 (605)
Q Consensus 88 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~ 163 (605)
.++|.......+.++...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 455555555556666655543 33333333332 34555555666666666653 3556666655333 45666
Q ss_pred HHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 164 TYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 164 ~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ .++...+-.+.. .+|..+-.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR~ 177 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVRN 177 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHHH
Confidence 665555655554321 223333333222 2244444555666666665 344455444443 23333444
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007384 239 ALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (605)
Q Consensus 239 ~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (605)
..+.++.+.+ ....+...+..+.. .++..+....+.++.+.|.. .|...+-...+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 4444444432 12344444444442 33445566666666666653 4444444444432 1 123455566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007384 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (605)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (605)
|.. +|...+..+.+.. +|..+-...+.++
T Consensus 249 g~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred CCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 663 4555555555432 2444444444333
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.53 E-value=12 Score=33.30 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (605)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (605)
|-+.-|.--|....... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...+.-|. +.-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 34444444555554443 33467899999999999999999999999988765433333333332 33468888888777
Q ss_pred HHHHHCCCCCChh--HHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007384 328 QEAKNQGISVGII--SYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (605)
Q Consensus 328 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (605)
...-+.+ +.|+. .|--+ -...-++.+|..-+ ++.. ..|..-|...|-.|.-..-.++ .+++++...
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~- 225 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKAD- 225 (297)
T ss_pred HHHHhcC-CCChHHHHHHHH---HHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-
Confidence 7766654 22222 22212 12333455665443 3333 3455666655555443222222 234444432
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 405 LCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 405 ~~p~-------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
-..+ ..||--+..-+...|+.++|..+|+..+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1211 346666777888899999999999988764
No 274
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=27 Score=37.19 Aligned_cols=318 Identities=13% Similarity=0.106 Sum_probs=171.8
Q ss_pred HHhCCChHHHHHHHHHH--------HHcCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007384 102 CASSKDSEGAFQVLRLV--------QEAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (605)
Q Consensus 102 ~~~~~~~~~A~~~~~~m--------~~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (605)
+.+..++++-..+.+.+ ...|++.+..-|. .+++-+...+.+..|+++-..+...-..- ..+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 34445555544444333 2456777666554 45777778888899988877765221111 4566666
Q ss_pred HHHHHhcCC--HHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCC--CCHHHHHHHHHH
Q 007384 169 IDGCAKAGQ--VAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKA 243 (605)
Q Consensus 169 i~~~~~~g~--~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~ll~~ 243 (605)
..-+.+..+ -+++++.. +++... . .+..+|..+.+-....|+.+-|..+++.-......++ .+..-+...+.-
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 666666532 22333333 333322 2 3456788888878888999999888764322111110 111223445556
Q ss_pred HHhcCChHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH---------HHHccCCHHHHHHHHH--HHH----H
Q 007384 244 CANAGQVDRAREVYKMIHKYN-----------IKGTPEVYTIAIN---------CCSQTGDWEFACSVYD--DMT----K 297 (605)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~---------~~~~~g~~~~A~~~~~--~m~----~ 297 (605)
+...|+.+....++-.+...- .+.....|.-++. .|-+..+. ++...|. ... .
T Consensus 556 aies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~ 634 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETI 634 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhh
Confidence 667777777776665554421 1111122222221 11111122 2221111 100 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHH---HH-------HHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 298 KGVIPDEVFLSALIDFAGHAGKVE---AA-------FEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 298 ~~~~p~~~~~~~li~~~~~~g~~~---~a-------~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.+..|+. .....++.+..... +| ..+.+.+... +......+.+--+.-+...|+..+|.++-.+..
T Consensus 635 ~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk 711 (829)
T KOG2280|consen 635 EGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK 711 (829)
T ss_pred cccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC
Confidence 1222322 23333444333211 11 1222222221 222333444555566777888888888877776
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
-||-..|.--+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|..++.+..
T Consensus 712 ----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 712 ----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred ----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6888888888889999988887666554432 25667788889999999999988875543
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.39 E-value=18 Score=34.97 Aligned_cols=168 Identities=15% Similarity=0.045 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChh
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGII 340 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~ 340 (605)
..|..+..++-+..++.+++.+-..-.. .|..| ......++..+....+.++++++.|+...+.. .-....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3445555555555555566555544332 22222 11223345556666777888888888776531 112345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHcCCChhHHHHHHHHHH----hCCCCC
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMN-----ALITALCDGDQLPKTMEVLSDMK----SLGLCP 407 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p 407 (605)
++..|-..|.+..++++|.-+.....+ .++..-..-|. .|.-++...|+.-+|.+.-++.. ..|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788888889999998888776665543 22211111222 24456778888888888777743 344333
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 408 N-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 408 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
. ......+.+.|...|+.+.|+.-++.+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 23455677888899999998888877653
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.80 E-value=11 Score=31.87 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=25.6
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 103 ASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.+.++.+.+..++..+.-. .|.. ..-..-...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445666666666655533 2322 11122223345566666666666665544
No 277
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.66 E-value=14 Score=32.85 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=38.2
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.-+..||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|..| --|+++-|.+-|...-+.
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 345567777666777777777777777777654222222233333322 456677776666555544
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.24 E-value=8.7 Score=33.61 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNAL 203 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l 203 (605)
.+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+.... |-..+...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666665432222 234455566666666666666665554332 111111111111
Q ss_pred HH--HHhccCCHHHHHHHHHHHh
Q 007384 204 IT--ACGQSGAVDRAFDVLAEMN 224 (605)
Q Consensus 204 i~--~~~~~g~~~~a~~~~~~~~ 224 (605)
.. .+...+++..|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1233567777777766554
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.22 E-value=26 Score=35.10 Aligned_cols=383 Identities=12% Similarity=0.083 Sum_probs=199.4
Q ss_pred HhhhHHHHHHHHHHhhCCC---CC------hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHh
Q 007384 71 CKSQKAIKEAFRFFKLVPN---PT------LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT--CAK 139 (605)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~ 139 (605)
..+++++.+|.+.|.++.+ .+ .+.-+.++++|... +.+.....+....+.. | ...|-.+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 4567889999999988742 22 22344567776654 5666666555555432 2 1223333322 347
Q ss_pred cCChhHHHHHHHHHHHc--CCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHH
Q 007384 140 SGKVDAMFEVFHEMVNA--GIE------------PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN----VKPDRVVFN 201 (605)
Q Consensus 140 ~g~~~~A~~~~~~m~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~ 201 (605)
.+.+++|.+.+..-... +.. +|-..-+..+..+...|++.++..+++++...= ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78889998887765543 211 122334667778889999999999999887543 235788888
Q ss_pred HHHHHHhccCC---------------HHHHHHHHHHHhhCcC----CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 007384 202 ALITACGQSGA---------------VDRAFDVLAEMNAEVH----PVDPDHITIGALMKACANA--GQVDRAREVYKMI 260 (605)
Q Consensus 202 ~li~~~~~~g~---------------~~~a~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~ 260 (605)
.++-.++++=- ++.+.-...+|..... .+.|.......++....-. .+..--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 86666554311 1111111122211100 1223333333333222211 1111122222222
Q ss_pred HhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007384 261 HKYNIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (605)
Q Consensus 261 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (605)
...-+.|+ .-+...|+..+.+ +.+++..+.+.+....+.+ =..++..++....+.++...|.+.+.-+....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld- 328 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD- 328 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-
Confidence 23333333 2233444444444 5566666555544332211 23568888889999999999999988776653
Q ss_pred CCChhHH-------HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHcCCC-hhHHHHHHHHH
Q 007384 336 SVGIISY-------SSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT---ALCDGDQ-LPKTMEVLSDM 400 (605)
Q Consensus 336 ~~~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~---~~~~~g~-~~~A~~~~~~m 400 (605)
|+...- ..+.+..+. .-+...=..+|+.....++... ..-..|+. -+-+.|. -++|+.+++..
T Consensus 329 -p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 329 -PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred -CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 322221 122222221 1223344556666655433221 22223333 3455555 88999999998
Q ss_pred HhCCCCC-CHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH---HHh-hHHHHHhh
Q 007384 401 KSLGLCP-NTITYSILL----VACER---KDDVEVGLMLLSQAKEDGVIPN----LVMFKCIIGM---CSR-RYEKARTL 464 (605)
Q Consensus 401 ~~~g~~p-~~~t~~~ll----~~~~~---~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~---~~~-~~~~a~~~ 464 (605)
.+ +.| |...-+.+. .+|.. ...+.+-..+-.-+.+.|+.|- ....|+|-++ |+. .|.+|...
T Consensus 407 l~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 87 344 333322222 33332 3344555555555566788765 3467777765 332 56666543
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.17 E-value=16 Score=32.78 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007384 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (605)
..+......+...+.+..+...+...... .........+......+...+....+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 44444444555555555555555444320 0112233344444444455555555555555555433221 111222222
Q ss_pred -HHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 007384 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (605)
Q Consensus 278 -~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (605)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666666666666666644221 112233333333455667777777777777665422145666777777777778
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007384 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (605)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (605)
.+.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888777642 33 344444444455666788888887777653
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.81 E-value=14 Score=31.69 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007384 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (605)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (605)
.+.++.+.+.+++|+...+..+++.+.+.|++....+++.. ++-+|.......+-.+. +....+.++=-.|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence 34455556667777777888888888888877666555543 23344333332222121 12223333322332
Q ss_pred hc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 262 KY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 262 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (605)
++ + ..+..++..+...|++-+|++..+..... +......++.+..+.++...-..+++....
T Consensus 86 kRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 86 KRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 2 24566667777788888887777664222 112234555666666665555555554444
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=19 Score=32.85 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=104.2
Q ss_pred CCCCCCCCCCCCccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhC
Q 007384 9 LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLV 87 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (605)
++.+||. .++-.-.+.+...-+.+-...+++.|...+.+..+-- ..+. .+|+ .+..+.|.-+.+++
T Consensus 18 ~t~~~wk---ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y--EnnrslfhA--------AKayEqaamLake~ 84 (308)
T KOG1585|consen 18 LTLTRWK---ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFHA--------AKAYEQAAMLAKEL 84 (308)
T ss_pred HHhhccC---CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHHH--------HHHHHHHHHHHHHH
Confidence 3445562 3344444555556666667788888888777766321 1221 1222 12344444444444
Q ss_pred CCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---C--CCC
Q 007384 88 PNP--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---G--IEP 160 (605)
Q Consensus 88 ~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~~ 160 (605)
..- -+..|+-....|.++|.++.|-..+++.-+. .+.-++++|+++|.+.... + ..-
T Consensus 85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 321 1234555566677777777776666554321 1222334444444332210 0 000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcC-CCCCCH
Q 007384 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN----VKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH 234 (605)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 234 (605)
-...+..+-+.+.+...+++|-..|.+-.... -.++ -..|...|-.+.-..++..|...++.--+... .-+.|.
T Consensus 149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 11223334445566666666655544332110 0111 12244444455556677777777766332211 112345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHH
Q 007384 235 ITIGALMKACANAGQVDRAREVY 257 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~ 257 (605)
.+...|+.+| ..|+.+++..++
T Consensus 229 r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 229 RSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHh-ccCCHHHHHHHH
Confidence 5666666655 345666555544
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.27 E-value=16 Score=31.46 Aligned_cols=135 Identities=14% Similarity=0.230 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (605)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (605)
+.++.+.+.+++|+...+..+++.+.+.|++.... .+.+.++-+|.......+-.+. +....+.++=-+|..+=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 34455566777888888888888888887755433 3344444445444333332222 22233333333333220
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007384 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (605)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (605)
...+..++..+...|++-+|+++....... +......++.+..+.++...-..+|+...++
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV------DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 024556667777778888888777664221 1112234566666666665555555555443
No 284
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.23 E-value=7.7 Score=36.51 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007384 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (605)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 375 (605)
|......+...++..-....+++.+..++-.+.... ..++... .+.++.+.+ -+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 333344555555555555667777777777665541 1122111 122333322 35667777777777888888888
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSL 403 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (605)
+++.+|+.+.+.+++.+|.++...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887776554
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.11 E-value=6.1 Score=30.01 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q 007384 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~ 454 (605)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++++-++ +.|. +...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 344566667777777889999999999999999999999999999887 4343 455788777653
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.05 E-value=1.1 Score=27.01 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSD 399 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~ 399 (605)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555544
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.62 E-value=6.4 Score=34.45 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=8.8
Q ss_pred ccCCHHHHHHHHHHH
Q 007384 281 QTGDWEFACSVYDDM 295 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m 295 (605)
..+++..|-+.|-+.
T Consensus 125 ~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 125 AQRDFKEAAELFLDS 139 (177)
T ss_pred HhchHHHHHHHHHcc
Confidence 345666666666554
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.36 E-value=7.3 Score=29.93 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 007384 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCS 455 (605)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~ 455 (605)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++++-++.. |.. ...|..+++-+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqElk 90 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHHh
Confidence 55566667777788999999999999999999999999999988754 433 237888876543
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.81 E-value=1.6 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007384 165 YGALIDGCAKAGQVAKAFGAYGI 187 (605)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (605)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.81 E-value=16 Score=30.55 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=34.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (605)
..++++++..+++.|.-.. |....+...-...+...|++++|.++|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5777788888887776554 55555544445556666777777777777653
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.27 E-value=1.2 Score=26.45 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007384 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (605)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (605)
+..+.+ |.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 333433 445556666666666666665553
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.24 E-value=1.7 Score=25.59 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
|..+...|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3444444444444444444444443
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.10 E-value=2 Score=25.25 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007384 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (605)
Q Consensus 410 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (605)
.+|..+...+...|++++|...|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688889999999999999999999998 5554
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.78 E-value=15 Score=32.25 Aligned_cols=118 Identities=9% Similarity=0.052 Sum_probs=73.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCChhhHHHH-----HHHHHhCCChH
Q 007384 37 RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNML-----MSVCASSKDSE 109 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-----l~~~~~~~~~~ 109 (605)
..+.. +.....+.+...+. ..........++......+++++|..-++... .+.-..+..+ .+.....|.++
T Consensus 65 ~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 65 QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444 55566666665552 12233334445566777788888888887654 3333333333 34567788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (605)
+|+.+++.....+. .......-.+.+...|+-++|+.-|.+....+
T Consensus 144 ~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88888877654321 22233445577888888888888888888764
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=27 Score=31.69 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=13.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH
Q 007384 350 SNAKNWQKALELYEHMKSIKLKPTV 374 (605)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~ 374 (605)
+..+++.+|+++|+++....+..+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchH
Confidence 3445556666666666554433333
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.39 E-value=20 Score=29.89 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=31.5
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 103 ASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
...++++++..+++.|.-. .|+. ..-..-...+...|++++|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3467777777777777643 3332 22222233456778888888888887765
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.28 E-value=31 Score=31.82 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007384 173 AKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (605)
.+.|++++|.+.|+.+...- -+-...+--.++-++.+.+++++|...+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34566666666666665431 0112333444455556666666666666666543
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.99 E-value=8.6 Score=29.25 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (605)
++.+-++.+...++.|++....+.+.+|.+.+++..|..+|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555566666666666666666666666666666554
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.98 E-value=1.6 Score=25.99 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhcCChhHH
Q 007384 127 CKLYTTLITTCAKSGKVDAM 146 (605)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A 146 (605)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33333344444444443333
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.72 E-value=41 Score=32.01 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=86.1
Q ss_pred HhCCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHc--------CCCCCH----
Q 007384 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (605)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~---- 162 (605)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+.+..++++|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666666666554321 12221 23444444443333777776666654332 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
.+...++.+|...+..+ +|..+++.+.... +-...++..-+..+.+.++.+++.+.+.+|.... .-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchHH
Confidence 45677788888877654 4556666665442 2224555556677777899999999999998752 21223344
Q ss_pred HHHHHH---HhcCChHHHHHHHHHHHhcCCCCC
Q 007384 239 ALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (605)
Q Consensus 239 ~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~ 268 (605)
.++..+ .... ...+...++.+....+.|.
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 444433 3332 3345455544444333433
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.85 E-value=19 Score=31.18 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 391 PKTMEVLSDMKSLGLCPNT-ITYSILLVACERKD----D-------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g----~-------~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (605)
++|+.-|++.+. +.|+. .++..+..++...+ + +++|...|+++.. .+|+..+|+.-+.+.
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444555444 56764 56666666665432 2 4445555555555 679999998877774
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.30 E-value=20 Score=33.89 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 007384 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (605)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (605)
|.+....+...++..-....+++.+...+-.++..... ..| ..+++ ++.+. .-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHH-ccChHHHHHHHhCcchhccccc
Confidence 44445555555555555556677777766665532110 011 12222 22222 2355677777777777777788
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
..+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888887777777666544
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.11 E-value=37 Score=35.29 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (605)
..+.+.+.+.+.|-.++|+++- +|..-. .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3455566666666666655432 222111 122345666776666654432 4456777777777
Q ss_pred ccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007384 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (605)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (605)
+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|.-..+|...|+++++
T Consensus 678 ~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 77777777776665431 34455556666665555444444444441 22233345566777777
Q ss_pred HHHHHH
Q 007384 289 CSVYDD 294 (605)
Q Consensus 289 ~~~~~~ 294 (605)
.+++.+
T Consensus 741 ~~lLi~ 746 (794)
T KOG0276|consen 741 LELLIS 746 (794)
T ss_pred HHHHHh
Confidence 666544
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.01 E-value=3.8 Score=23.88 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
|..+...|.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.72 E-value=85 Score=34.23 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChH
Q 007384 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~ 109 (605)
+.|.+.|++++|.+-|-+-+. ...+...+ .-+.....+.+-..+++... -.+...-..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi-----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVI-----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHH-----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 445589999999998876653 22222221 11223334444444444432 233444567888899988888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
+-.++.+... .|.. .+-....+..+.+.+-.++|.-+-.... .+......++ -..+++++|++.+..+.
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7776665443 2211 1113345556666666666665544432 1333333333 34567777777776653
No 306
>PRK09687 putative lyase; Provisional
Probab=81.63 E-value=50 Score=31.47 Aligned_cols=137 Identities=11% Similarity=-0.032 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 007384 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (605)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (605)
+..+-...+.++.+.++ .++...+-.+... +|...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34455555555555554 3444444444442 23333333344444332 12344444444442 23455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (605)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 420 (605)
.++.+.|+ ..|...+-...+. ++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 66666665 3344444444432 22 123455556666653 466666665542 345555444444443
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.62 E-value=3.4 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 412 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+..+...+...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555555555555555555554
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.21 E-value=85 Score=33.91 Aligned_cols=151 Identities=10% Similarity=0.084 Sum_probs=86.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 007384 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (605)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 108 (605)
.++-|++.+.+++|+++-+.....- +. .......++.-+...|++++|-...-.|...+..-|..-+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 4556889999999998887655432 21 2222333333345567888888888888888888888887777777666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------------------HHcCCCCCHHHHHHHHH
Q 007384 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM------------------VNAGIEPNVHTYGALID 170 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------------~~~g~~~~~~~~~~li~ 170 (605)
.....+ +.......+...|..++..+.. .+...-.++..+- .+. .-+...-..|+.
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~ 513 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAH 513 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHH
Confidence 544332 2222112356677777776665 2222111111110 000 112223344667
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007384 171 GCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~ 189 (605)
.|...+++..|++++-..+
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7777777777777776655
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.91 E-value=51 Score=31.12 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHH
Q 007384 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (605)
Q Consensus 284 ~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (605)
...+|+++|+.... ..+.-|..+...++..... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455666553221 2233355666666655443 11 222223333333332 33566667777788888888888888
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007384 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (605)
Q Consensus 360 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (605)
++++..... +...|...|..+|......|+..-...+..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 877766543 4455677788888888888876555444443
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.38 E-value=10 Score=29.14 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666666666666665543
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.36 E-value=21 Score=31.65 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCC-CCCHHHHHHHHHHHHhcCChHHH
Q 007384 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVDRA 253 (605)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A 253 (605)
.|++.|-.+...+.--++.....|..-|. ..+.+++.+++....+...+- .+|...+.+|++.|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444432223333333332222 344444444444443321111 33444444444444444444443
No 312
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.70 E-value=91 Score=33.33 Aligned_cols=163 Identities=12% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (605)
.|..-+..+...++.. ....+.+...-+..+......++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 3444444444433222 44444444433334666777888888888888888888877655421 1234555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HH--HHhcCCHHH
Q 007384 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VA--CERKDDVEV 427 (605)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~--~~~~g~~~~ 427 (605)
++|+......+-+.+.+ .|+..|... ..++++.+....+-.+.-++.+.. .- ..+.|++.+
T Consensus 450 ra~d~~~v~~i~~~ll~---------------~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~ 513 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE---------------EYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFRE 513 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHHH---------------HHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHH
Confidence 66666555555444442 233333211 111111111100000111111111 11 123477777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
|.+.+-.+.+.++.|...-..-|.++
T Consensus 514 Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 514 AASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 77777777777777777666655554
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.10 E-value=4.7 Score=24.81 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
+++.|...|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555443
No 314
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.47 E-value=28 Score=26.75 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007384 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (605)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 119 (605)
+.++|-.+-+.+...+. ........-+....++|++++|..+.+..+.||...|.++-. .+.|-.+.+..-+..|.
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 56777777777766541 122222222233445677888887777777777777766643 34455555555555555
Q ss_pred HcC
Q 007384 120 EAG 122 (605)
Q Consensus 120 ~~g 122 (605)
..|
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 555
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.12 E-value=1e+02 Score=32.89 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhc
Q 007384 108 SEGAFQVLRLVQEAGLKADCKLYTTLIT----T-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKA 175 (605)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 175 (605)
...|.+.++...+.| +......+.. + ++...+.+.|...|..... .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777787777665 2222222222 2 3355678888888888765 33 333455566666653
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHH--hc
Q 007384 176 G-----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NA 247 (605)
Q Consensus 176 g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~ 247 (605)
. +.+.|+.+|.+.-+.| .|+....-..+..... ..+...|.++|...... | .++..-+.+++.... ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G-~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--G-HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHhCCCcC
Confidence 2 5666888887777776 4454444333333333 24566777777776653 2 122222211111111 12
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 007384 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (605)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 300 (605)
.+...|..++.+..++| .+....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 35677777777777776 3322222222333333 666666666666655554
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.02 E-value=62 Score=30.48 Aligned_cols=58 Identities=10% Similarity=-0.013 Sum_probs=32.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
++.....|..+|.+.+|.++.+..+..+.- +...+-.++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334445566666666666666665554432 4555666666666666655555544444
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.63 E-value=14 Score=35.37 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhhCC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007384 74 QKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (605)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (605)
+|.+++|+..|.... .| |.+++..-..+|.+..++..|..-....+..+ ..-.-.|..-+.+--..|...+|.+-+
T Consensus 110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKkD~ 188 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKKDC 188 (536)
T ss_pred ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 344444444444321 12 44444444444444444444443333333221 111223343444444445555665555
Q ss_pred HHHHHc
Q 007384 151 HEMVNA 156 (605)
Q Consensus 151 ~~m~~~ 156 (605)
+..++.
T Consensus 189 E~vL~L 194 (536)
T KOG4648|consen 189 ETVLAL 194 (536)
T ss_pred HHHHhh
Confidence 555544
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.24 E-value=40 Score=29.28 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCC-----------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007384 356 QKALELYEHMKSIKLKPT-VSTMNALITALCDGD-----------QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (605)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 423 (605)
++|..-|++.... .|+ ..++..+..+|...+ .+++|.+.|++... ..|+..+|..-+..+.
T Consensus 52 edAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 52 EDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH---
Confidence 3444444444443 454 345555555554332 25667777777666 4899999998887764
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q 007384 424 DVEVGLMLLSQAKEDGVIPN 443 (605)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~ 443 (605)
+|-+++.++.+.+..+.
T Consensus 125 ---kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 125 ---KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp ---THHHHHHHHHHSSS---
T ss_pred ---hhHHHHHHHHHHHhhhh
Confidence 36778888877765443
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.86 E-value=67 Score=30.27 Aligned_cols=71 Identities=8% Similarity=0.017 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMF 447 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~ 447 (605)
+++.....|..+|.+.+|.++-++.+... +.+...+-.++..++..|+--.+..-++++.+ .|+..+..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455567888888888888888877642 33666677788888888887677666665532 3666665544
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.73 E-value=0.91 Score=38.15 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007384 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 424 (605)
++..+.+.+..+.....++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3445555566666666666666544344556666666666666666666655541 111233345566666666
Q ss_pred HHHHHHHHHHH
Q 007384 425 VEVGLMLLSQA 435 (605)
Q Consensus 425 ~~~a~~~~~~~ 435 (605)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555443
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.41 E-value=6.3 Score=24.20 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888888888888888887764
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.73 E-value=1.2e+02 Score=32.41 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhcc
Q 007384 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDG-----CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (605)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 210 (605)
...|.++++...+.| +...-..+..+ +....+.+.|+..|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888888765 33333333322 4456789999999988876 44 233555666666664
Q ss_pred C-----CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 007384 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (605)
Q Consensus 211 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (605)
. +...|+.++...... + .|+.......+..... ..+...|.++|....+.|.. .++-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~--g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL--G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc--C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 567788888877653 2 3444333222221112 23567888999888888742 22222222221
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007384 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (605)
-..+...|...+.+.-+.| .|....-...+..+.. ++.+.+.-.+..+...+.
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2346778888888888887 3332222333334444 677777777766666653
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.40 E-value=35 Score=26.27 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=26.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (605)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (605)
.+...|++++|..+.+.+. .||...|-+|.. .+.|..+.+..-+..|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445556666655555442 455555555443 34455555555555555554
No 324
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.19 E-value=41 Score=36.28 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCceeeccccCcccchhHH
Q 007384 552 PRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKPF 592 (605)
Q Consensus 552 ~~a~~~~~~a~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 592 (605)
++| ++...+.+++|..+...+..+=+-..+++++++.+
T Consensus 522 ~~A---L~~i~~L~liP~~~~~V~~~a~~f~~l~~~V~~~l 559 (613)
T PF04097_consen 522 EQA---LDIIEKLDLIPLDPSEVRRCAENFRQLDDEVRRNL 559 (613)
T ss_dssp HHH---HHHHHHTT-S-S-HHHHHHHHHCGCCS-HHHHTTH
T ss_pred HHH---HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHH
Confidence 556 55556678899665544444444455666655544
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.92 E-value=25 Score=31.45 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=9.2
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 007384 239 ALMKACANAGQVDRAREVYKM 259 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~ 259 (605)
.++..+|-.|++++|..-++.
T Consensus 40 flfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 40 FLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhhcchHHHHHHHHHH
Confidence 344444444444444444433
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.80 E-value=35 Score=34.34 Aligned_cols=147 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 007384 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (605)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (605)
.|...-...-|.--...|++-.|-+-+..... ..+.+..............|+++.+.+.+...... +.....+..
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr---~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~ 361 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALR---NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLR 361 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHH---hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHH
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH
Q 007384 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (605)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (605)
.++....+.|++++|..+-..|....+. +..............|-++++...++++...+.+.+....|.+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.83 E-value=27 Score=31.27 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007384 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (605)
Q Consensus 96 ~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (605)
+..++.+.+.+++++++...+.-++.. +.|...-..+++.+|-.|++++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 334455556666666666666555543 4455555566666666666666655554443
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.45 E-value=7.7 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 412 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
|..+...+...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444455555555555544443
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.44 E-value=1.8 Score=36.27 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007384 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (605)
Q Consensus 99 l~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (605)
+..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344445555555555555544433445555555555555555455444444
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.33 E-value=6.7 Score=22.83 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.04 E-value=74 Score=28.10 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=60.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007384 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-----LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 419 (605)
+...+..+|++++|...++..... |....+.. |.......|.+++|+.+++.....+. .......-.+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345667788888888888877653 22233333 44567788888999888876554321 222233344778
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 007384 420 ERKDDVEVGLMLLSQAKEDG 439 (605)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~g 439 (605)
...|+-++|+.-|++.+..+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 88899999999998888765
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.90 E-value=11 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 415 LLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 415 ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
+..+|...|+.+.|+++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666655555543
No 333
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.34 E-value=1.2e+02 Score=31.00 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=28.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 007384 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (605)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (605)
.++.++..+++++.+...|.....+.+|.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 35677777788777777776666666777776776666543
No 334
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.24 E-value=1.8e+02 Score=31.55 Aligned_cols=51 Identities=4% Similarity=-0.104 Sum_probs=36.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 434 (605)
+..+...|...+|...+..+... .+......+.......|.++.+......
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 45567789999999999888763 3455556666666778888877766544
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.05 E-value=8.7 Score=21.00 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 007384 345 LMGACSNAKNWQKALELY 362 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~ 362 (605)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.87 E-value=55 Score=26.45 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
+..+-+..+....+.|++.....-+.+|.+.+|+..|.++|+-++.. ..+...+|-.+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 34455666667778999999999999999999999999999888753 34444477777654
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.12 E-value=65 Score=28.56 Aligned_cols=92 Identities=12% Similarity=0.037 Sum_probs=42.3
Q ss_pred HhccCCHHHHHHHHHHHhhCcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 007384 207 CGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (605)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (605)
+.+.|++++|..-|.+.....+.... -.+.|..-..+..+.+.++.|+.-..+..+.+ +....+...-..+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 34455555555555555442111000 01223333334455555666665555555554 1111112222345556666
Q ss_pred HHHHHHHHHHHHHCC
Q 007384 285 WEFACSVYDDMTKKG 299 (605)
Q Consensus 285 ~~~A~~~~~~m~~~~ 299 (605)
+++|++=|.++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 666666666666653
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.06 E-value=1.9e+02 Score=31.28 Aligned_cols=180 Identities=15% Similarity=0.171 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCCCc--hHHHHHHHHHHHh-hhHHHHHHHHHHhhCC----CCChh-----hHHHHHHHHHhCCChHH
Q 007384 43 ECIDLLEDMERKGLLDM--DKVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----TFNMLMSVCASSKDSEG 110 (605)
Q Consensus 43 ~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~~~ll~~~~~~~~~~~ 110 (605)
-|++.++.+.+..-.++ ...++..++.++. .-.+++.|...+.+.. +++.. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34556665554322222 2344444444443 2345777777776642 22111 1223445555555554
Q ss_pred HHHHHHHHHHcC----CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 007384 111 AFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCA--KAGQVAK 180 (605)
Q Consensus 111 A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~ 180 (605)
|...++..++.- ..+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 877777765421 11222333333 333333368888888887765432 2344444555554433 3455566
Q ss_pred HHHHHHHHHhCC---------CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHH
Q 007384 181 AFGAYGIMRSKN---------VKPDRVVFNALITACG--QSGAVDRAFDVLAEM 223 (605)
Q Consensus 181 A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 223 (605)
+.+..+.+.... ..|-..+|..+++.++ ..|+++.+.+.++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666553211 1344566666666543 456655555554443
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.86 E-value=17 Score=34.71 Aligned_cols=53 Identities=19% Similarity=-0.011 Sum_probs=32.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
-|.+.|.+++|++.+....... +-+++++..-..+|.+...+..|..=-....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4667777777777776655543 2256666666666777766665555444443
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=66.41 E-value=31 Score=23.05 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 415 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
+.-++.+.|+++.|++..+.+++ +.|+..-...|-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 44566777777777777777777 56776665555444
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.41 E-value=9.8 Score=21.77 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007384 172 CAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~ 189 (605)
+.+.|++++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333344444444444333
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.34 E-value=71 Score=29.93 Aligned_cols=88 Identities=8% Similarity=-0.037 Sum_probs=43.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----
Q 007384 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG---- 208 (605)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---- 208 (605)
=|.+++..+++.+++...-+--+.--+.-..+...-|-.|.|.+.+..+.++-.......-..+...|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3556666666666655444333221111223344445556666666666666555544321223333555444433
Q ss_pred -ccCCHHHHHHHH
Q 007384 209 -QSGAVDRAFDVL 220 (605)
Q Consensus 209 -~~g~~~~a~~~~ 220 (605)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 346666666665
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.82 E-value=12 Score=21.34 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=15.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 007384 133 LITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
+..++.+.|+.++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445566666777777777666654
No 344
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.28 E-value=85 Score=26.27 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (605)
.|+++.-....+.+.-.+.+++.+..-. -.-+..+|.+++.+.++..- ---+..+|..+.+.+..++...|.++
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455555455555555555555542210 02244567777777765554 34456677777776777777777777
Q ss_pred HHHHHh
Q 007384 451 IGMCSR 456 (605)
Q Consensus 451 i~~~~~ 456 (605)
|..+.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 776544
No 345
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.11 E-value=68 Score=25.10 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (605)
...++|..+.+.+...+. ....+--.-+..+.+.|++++|+. .- .....||...|-+|-. .+.|..+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~~--~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--LP--QCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--HH--TTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--hc--ccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 345666666666665442 222222233344556666666611 11 1112456555555433 4566666666666
Q ss_pred HHHHhCC
Q 007384 186 GIMRSKN 192 (605)
Q Consensus 186 ~~m~~~g 192 (605)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6665554
No 346
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.20 E-value=39 Score=27.56 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHh
Q 007384 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (605)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (605)
++.++|..|...++....+.++...+..+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555444444444444444444555555555443
No 347
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.62 E-value=2.1e+02 Score=30.11 Aligned_cols=88 Identities=6% Similarity=0.091 Sum_probs=60.0
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhhhHHHHHHHHHHhhCC------CCChhhHHHHHH
Q 007384 32 YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMS 100 (605)
Q Consensus 32 ~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~------~~~~~~~~~ll~ 100 (605)
|..+. +-|..+.+..+|++-...- |.....+..... .+...|+.+.-.+.|+... --....|-..|.
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 55555 7899999999999988643 555444433333 3345566667777777643 124456777777
Q ss_pred HHHhCCChHHHHHHHHHHHHc
Q 007384 101 VCASSKDSEGAFQVLRLVQEA 121 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~ 121 (605)
--..++++.....+++..++.
T Consensus 160 ~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh
Confidence 777788889999999888863
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.49 E-value=93 Score=26.07 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHH
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSI 414 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (605)
..|+++......++..-...+++.+.... -..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34666666666666666666666553211 02345678888888866655 3456777888888788889999999
Q ss_pred HHHHHHhcCCH
Q 007384 415 LLVACERKDDV 425 (605)
Q Consensus 415 ll~~~~~~g~~ 425 (605)
++.+|.+....
T Consensus 121 li~~~l~g~~~ 131 (145)
T PF13762_consen 121 LIKAALRGYFH 131 (145)
T ss_pred HHHHHHcCCCC
Confidence 99988876433
No 349
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=1.4e+02 Score=28.11 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHH----HHhCCCCCCHHH
Q 007384 378 NALITALCDGDQLPKTMEVLSD----MKSLGLCPNTIT 411 (605)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t 411 (605)
.-+|..+.+.|++.+|+.+... +.+..-+|+..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 4577888899999999876544 333333454433
No 350
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.01 E-value=65 Score=24.14 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHHHH
Q 007384 283 GDWEFACSVYDDMT 296 (605)
Q Consensus 283 g~~~~A~~~~~~m~ 296 (605)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33333333333333
No 351
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.14 E-value=1.1e+02 Score=28.82 Aligned_cols=87 Identities=6% Similarity=-0.045 Sum_probs=36.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----
Q 007384 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----- 385 (605)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----- 385 (605)
|.+++..+++.++....-+--+..-+..+.+.-.-|-.|.|.|....+.++-..-.+..-..+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 445555555555443332222211111122333333345566665555555554443222222333444444333
Q ss_pred cCCChhHHHHHH
Q 007384 386 DGDQLPKTMEVL 397 (605)
Q Consensus 386 ~~g~~~~A~~~~ 397 (605)
=.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 245556655554
No 352
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.85 E-value=1.7e+02 Score=28.56 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHH
Q 007384 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ---SGAVDRAFDVL 220 (605)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~~ 220 (605)
+.-+.++++.++.. +.+...+..++..+.+..+.+...+.++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666655553 3455666666666666666777777777776652 2245556655544332 12344444444
Q ss_pred HH
Q 007384 221 AE 222 (605)
Q Consensus 221 ~~ 222 (605)
.+
T Consensus 126 ~~ 127 (321)
T PF08424_consen 126 EK 127 (321)
T ss_pred HH
Confidence 44
No 353
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.81 E-value=1.4e+02 Score=27.73 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=12.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 007384 240 LMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
|...|...+.+.+..++++++..
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHH
Confidence 44455555555555555555543
No 354
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=60.68 E-value=1.7e+02 Score=28.63 Aligned_cols=15 Identities=0% Similarity=0.133 Sum_probs=8.7
Q ss_pred CChhHHHHHHHHHHh
Q 007384 388 DQLPKTMEVLSDMKS 402 (605)
Q Consensus 388 g~~~~A~~~~~~m~~ 402 (605)
+..+++...|.+..+
T Consensus 272 ~~~~~~~~~~~~a~~ 286 (352)
T PF02259_consen 272 ESSDEILKYYKEATK 286 (352)
T ss_pred ccHHHHHHHHHHHHH
Confidence 455566666666554
No 355
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.66 E-value=80 Score=24.74 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007384 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (605)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 117 (605)
....++|-.+.+.+...+. ........-+....++|++.+|+..=...+.||...|.+|-. .+.|-.+++..-+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 3466777777777777663 222222222233445577777743333344566666655532 455666666666655
Q ss_pred HHHcC
Q 007384 118 VQEAG 122 (605)
Q Consensus 118 m~~~g 122 (605)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 55444
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.27 E-value=21 Score=22.73 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=7.4
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007384 171 GCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~ 189 (605)
+|...|+.+.|.+++++..
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333333333333333333
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.76 E-value=1.3e+02 Score=26.83 Aligned_cols=72 Identities=8% Similarity=-0.022 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHH
Q 007384 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRA 216 (605)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a 216 (605)
+.|.+.|-.+...+.--++.....|...|. ..+.++++.++-...+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 666777777666654445555555555554 55666777766665542 2355677777777777777777665
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.19 E-value=1.2e+02 Score=30.88 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHH---CCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-----
Q 007384 314 AGHAGKVEAAFEILQEAKN---QGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKS-------IKLKPT----- 373 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~----- 373 (605)
+.-.|++.+|.+++...-- .|...+ -..||.|...+.+.|.+..+..+|....+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3445777777776654321 121111 12235554455556666666666655542 343332
Q ss_pred ------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007384 374 ------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (605)
Q Consensus 374 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 421 (605)
..+||. .-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233443 23567789999999999887654 56788899999988853
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.47 E-value=1.4e+02 Score=26.67 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=23.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 245 ANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
.+.|++++|..-|........+.. ...|..-..++.+.+.++.|++-..+.++.
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 344555555555555444321111 122333333444455555555444444444
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.24 E-value=2.4e+02 Score=29.15 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=123.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
|-...-+++..+..+...+-...+..+|...| .+-..|-.++.+|... ..+.-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55567788888999989999999999998865 4567788899999888 567788899988877532 5555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHH
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (605)
-|-+ ++...+...|.+...+=++. =...|.-|...- ..+.+..+++...+... .|...-.+.+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHhc
Confidence 5555 88888888888876542210 123555555322 35667777777766543 344445556666667788
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007384 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (605)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (605)
...++++|.+++..+.+.+ ..|.-+...++..
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 8889999999999888776 3444444444443
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.11 E-value=2.2e+02 Score=28.78 Aligned_cols=7 Identities=43% Similarity=0.453 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 007384 396 VLSDMKS 402 (605)
Q Consensus 396 ~~~~m~~ 402 (605)
-++.|..
T Consensus 302 ei~~mk~ 308 (413)
T PHA02875 302 ELRRIKS 308 (413)
T ss_pred HHHHHHh
Confidence 3444544
No 362
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=56.03 E-value=2e+02 Score=27.78 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=32.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH
Q 007384 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (605)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (605)
.+..|..+..++++.+.++.+++....+ |.--..|.+....+.+.|
T Consensus 102 ~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 102 RVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 4456677778888888888888887765 556666666666666655
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.48 E-value=1.8e+02 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 007384 126 DCKLYTTLITTCAKSGKVDAMFEVFH 151 (605)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (605)
|+.....+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 66777788888888888888776653
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.37 E-value=1.7e+02 Score=26.83 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=47.2
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHH---HH-HHHHh--cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 007384 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LL-VACER--KDDVEVGLMLLSQAKEDGVIPN---LVMFKCIIGMCS 455 (605)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll-~~~~~--~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~ 455 (605)
+..+++.+|+++|++.....+..+.--|+. ++ .++++ ..+.-.+...+++-.+ ..|+ ..-+..|-+++.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCcccccHHHHHHHHHHH
Confidence 467889999999999877654444333332 12 12222 2455556666666665 3343 333444433332
Q ss_pred h-hHHHHHhhhhhhhhccCCCc
Q 007384 456 R-RYEKARTLNEHVLSFNSGRP 476 (605)
Q Consensus 456 ~-~~~~a~~~~~~~~~~~~~~~ 476 (605)
- .-.+...+.+.+..|++.++
T Consensus 243 aieE~d~e~fte~vkefDsisr 264 (288)
T KOG1586|consen 243 AIEEQDIEKFTEVVKEFDSISR 264 (288)
T ss_pred HHhhhhHHHHHHHHHhhhccch
Confidence 1 11223345556666666544
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.65 E-value=3.4e+02 Score=30.17 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=49.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHH-HHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 007384 137 CAKSGKVDAMFEVFHEMVNAGIEPNV-------HTYGALIDG-CAKAGQVAKAFGAYGIMRSK----NVKPDRVVFNALI 204 (605)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li 204 (605)
.....++++|..+..++...-..|+. ..|+.|-.. ....|+++.|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34556778888777776553212221 133333322 23456777777766655432 2233455566666
Q ss_pred HHHhccCCHHHHHHHHHHHh
Q 007384 205 TACGQSGAVDRAFDVLAEMN 224 (605)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~ 224 (605)
.+..-.|++++|..+..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 505 EAAHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHHHhchHHHHHHHHHHHH
Confidence 67777788888777765544
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.35 E-value=93 Score=25.22 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
+..+-++.+...++.|++......+.+|.+.+++..|..+|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666677777777777777888888888887777776654
No 367
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.28 E-value=1.9e+02 Score=27.03 Aligned_cols=121 Identities=8% Similarity=0.123 Sum_probs=62.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcC
Q 007384 247 AGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK---GV--IPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g 318 (605)
...+++|+.-|+++.+..-... -.+...+|..+.+.+++++..+.+.+|..- .+ .-+..+.++++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467788888887776532211 233455677777778877777777776531 11 113344555555555444
Q ss_pred CHHHHHHHHHHHHHC-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 319 KVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 319 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
+.+....+++.-.+. +-+.-..|-+-|...|...|.+.+..+++.++.+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 444444443322111 1111112223455555556666666666665543
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.00 E-value=68 Score=24.30 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=25.5
Q ss_pred CccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~ 55 (605)
..|.|+......-..++..|++++|++.+-.+.+.+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 457777777777777788888888888888887765
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.93 E-value=2.2e+02 Score=27.75 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=13.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC
Q 007384 419 CERKDDVEVGLMLLSQAKEDGV 440 (605)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~ 440 (605)
+...|-.+.|..+++-+++..+
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHc
Confidence 3456666666666666665533
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.02 E-value=50 Score=21.46 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=17.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007384 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (605)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (605)
.+.|-..++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555566665555555555555444
No 371
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.36 E-value=75 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888766
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.26 E-value=3.9e+02 Score=30.10 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH-
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAG--IEP-NVHTYGALIDGCAKAGQ-----------------VAKAFGAYGIM- 188 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~-~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m- 188 (605)
|..|+..|...|+.++|+++|.+..... ..+ -..-+-.++.-+.+.+. .+...++|..-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6778888888888888888887776521 010 11122224443333333 33334444330
Q ss_pred --HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc
Q 007384 189 --RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (605)
Q Consensus 189 --~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (605)
....+.++ .+-.|......+-+...++.+... .-.++....+.++..|+..
T Consensus 587 ~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~--~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISD--NRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHh--ccccchHHHHHHHHHHHHH
Confidence 00111111 223466777788888888888764 2245666777777777653
No 373
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=50.21 E-value=2.6e+02 Score=27.41 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
....+|..++..+.+.|.++.|...+.++...+... .+...-.-...+-..|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777778888888888888887776533111 223333344555667777888887777665
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.01 E-value=1.2e+02 Score=23.94 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888766
No 375
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.56 E-value=2.3e+02 Score=28.57 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH--c----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVN--A----GI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~--~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (605)
...|++.++-.|++..|+++++.+.- . .+ .-.+.++-.+.-+|.-.+++.+|.+.|....-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666665554321 0 11 22445566666777777777788777777653
No 376
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.36 E-value=1.3e+02 Score=23.69 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHH
Q 007384 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--DDVEVGLMLLSQAKEDGVIPNLVM 446 (605)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~p~~~~ 446 (605)
..++..|...|+.++|...+.++.... -.......++..+... ..-+....++..+.+.+..+....
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~ 74 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQF 74 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 345566777777888777776653210 1112222333333332 223344456666666555444433
No 377
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.19 E-value=2.5e+02 Score=26.89 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 007384 306 FLSALIDFAGHAGKVEAA 323 (605)
Q Consensus 306 ~~~~li~~~~~~g~~~~a 323 (605)
+|.-++.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455666666666665543
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=48.45 E-value=40 Score=18.11 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
|..+...+...|++++|...|+..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444443
No 379
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.11 E-value=2.6e+02 Score=26.94 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHH
Q 007384 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~ 223 (605)
.|.-+.-+.|+..+|.+.|+++.+. .|=...+ ..|+.++....-+.++..++.+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444667777777777776654 2222222 34666666666555555555444
No 380
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.85 E-value=99 Score=23.22 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 007384 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (605)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 107 (605)
|+.+.|..++..++ ..+..|..++.++-..|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444555555444 344444444444444443
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.27 E-value=40 Score=23.36 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHH
Q 007384 378 NALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
-.+|.+|.+.|++++|.+.++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555555555555555555543
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.19 E-value=56 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=6.6
Q ss_pred HHHHHHHcCCChhHHH
Q 007384 379 ALITALCDGDQLPKTM 394 (605)
Q Consensus 379 ~li~~~~~~g~~~~A~ 394 (605)
.|+.+|+..|++.+++
T Consensus 48 ~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 48 YLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 383
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.89 E-value=17 Score=29.62 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (605)
.|.-.+|..+|+.|.+.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3444555666666666665555 45555543
No 384
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.67 E-value=2.6e+02 Score=26.54 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhc-cCC-HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHH
Q 007384 176 GQVAKAFGAYGIMRS-KNVKPDRVVFNALITACGQ-SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (605)
Q Consensus 176 g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (605)
..+.+|+++|+..-. ..+-.|..+...+++.... .+. ...--++.+-+... .+-.++..+...++..+++.+++..
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t-~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST-FSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc-cccCCChhHHHHHHHHHHhcccHHH
Confidence 345566666653221 1233455555555555544 211 11122222222221 2234455555566666666666666
Q ss_pred HHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007384 253 AREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (605)
Q Consensus 253 A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 293 (605)
-.++++..... +...|...|..+|....+.|+..-..++.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66666655443 334455566666666666666654444443
No 385
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.54 E-value=23 Score=28.93 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=18.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
.|.-.+|-.+|..|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34556667777777777766654 6666543
No 386
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.31 E-value=80 Score=20.48 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=8.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH
Q 007384 141 GKVDAMFEVFHEMVNAGIEPNVH 163 (605)
Q Consensus 141 g~~~~A~~~~~~m~~~g~~~~~~ 163 (605)
|-..++..++++|.+.|+..+..
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~ 38 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPK 38 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHH
Confidence 33333344444444333333333
No 387
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=45.91 E-value=3.6e+02 Score=27.93 Aligned_cols=166 Identities=10% Similarity=0.052 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHH
Q 007384 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (605)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (605)
.|....-+++..+..+..+.-+..+..+|...| -+...|..++..|... ..+.-..+++++.+- . -.|.+.-..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--d-fnDvv~~Re 137 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--D-FNDVVIGRE 137 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--c-chhHHHHHH
Confidence 355555666666666666666666666666654 2555666666666665 444555556555442 1 123333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYNIK-----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDF 313 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~ 313 (605)
|...|-+ ++.+.+...|.++..+-++ .-...|..++..- ..+.+..+.+..++... |..--.+.+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3333333 6666666666665544321 1123444444321 23444444444444432 222223344444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 007384 314 AGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~ 334 (605)
|....++++|++++..+.+.+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD 235 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc
Confidence 555566666666666655554
No 388
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.91 E-value=78 Score=32.98 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=25.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (605)
|.+...+.|...+|..++.+..... .....++-++.++|....+++.|++.|++..+.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 3333344444444444444433322 122334444444444445555555555444433
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.42 E-value=62 Score=22.42 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 007384 168 LIDGCAKAGQVAKAFGAYGI 187 (605)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~ 187 (605)
+|.+|...|++++|.+..++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444443333
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.61 E-value=1.2e+02 Score=26.86 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 405 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
..|+..+|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468888888888888888888888888888876
No 391
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=44.37 E-value=3.6e+02 Score=27.39 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007384 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (605)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (605)
...++.-|.-.|+..+|...++++.-- .--...++-+++.+..+.|+-...+.+++..-.. ..+|-+.|-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhh
Confidence 457788899999999999887664321 1124567889999999999988888888887754 45677888888876
Q ss_pred CCC
Q 007384 387 GDQ 389 (605)
Q Consensus 387 ~g~ 389 (605)
-.+
T Consensus 587 V~d 589 (645)
T KOG0403|consen 587 VYD 589 (645)
T ss_pred hhc
Confidence 543
No 392
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.57 E-value=94 Score=24.49 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=23.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
+++.+.+|...++|+++.+.|.+.| +.+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556667777777777777777776 445444444433
No 393
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.23 E-value=83 Score=21.00 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=17.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007384 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413 (605)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 413 (605)
+.-++.+.|++++|.+..+.+.+ +.|+..-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 34455666666666666666655 355544433
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.53 E-value=1.6e+02 Score=30.81 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=58.8
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007384 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (605)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (605)
--.|+...|.+.+.......+.-..+....+.....+.|..-.|..++.+..... ...+-++..+.++|.-..+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3456666666666554432221122233444444555566666666666655554 334556666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 360 ELYEHMKSIKLKPTVSTMNALITALC 385 (605)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (605)
+.|++..+.. +.+.+.-+.|...-|
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 7777776653 334555555554433
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.01 E-value=1.7e+02 Score=25.66 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHH-----HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007384 355 WQKALELYEHMKSIKLKPT--VSTM-----NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (605)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 422 (605)
++.|..+|+.+.+.--.|. .... -..+..|.+.|.+++|.+++++... .|+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 4566666666654321221 1111 1233457788888888888887765 45555544444444333
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.91 E-value=2.3e+02 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007384 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (605)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (605)
+.|+..+|.+.+-.+.+.+..|...-...|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 347777787777777777666655544444443
No 397
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=41.05 E-value=20 Score=36.24 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=36.9
Q ss_pred cCchhHHHHHHHHHHhCCCCCcccccCCceeeccccCcccchhHHHHHHHh-hhhhcC
Q 007384 548 GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKPFSARRIS-FRRRIL 604 (605)
Q Consensus 548 g~~~~~a~~~~~~a~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 604 (605)
|+. .+.+-.+++|.+.|..|.+|...|.++||+..+- .+|=.=+-+ .|+||+
T Consensus 419 GR~-QEvM~VLee~mr~g~ipe~PVYlDGMI~EatAIh----taYPEyL~~~lr~~I~ 471 (637)
T COG1782 419 GRS-QEVMIVLEEAMRKGLIPEVPVYLDGMIWEATAIH----TAYPEYLNKELRERIF 471 (637)
T ss_pred ccc-ceehhHHHHHHhcCCCCCCceeeeeeeeehhhhh----hcCHHhhhHHHHHHHh
Confidence 443 3567789999999999999999999999976543 334333333 555553
No 398
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.58 E-value=3.8e+02 Score=26.65 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=41.0
Q ss_pred ChhhHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 007384 91 TLSTFNML---MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMVN 155 (605)
Q Consensus 91 ~~~~~~~l---l~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 155 (605)
|...|-++ +..+.+.|.+..|++..+.+...+..-|+..-..+|+.|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 3456777888888888887777664446666666676664 45566666666665443
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.29 E-value=1.7e+02 Score=24.56 Aligned_cols=57 Identities=7% Similarity=0.050 Sum_probs=26.5
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (605)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (605)
.+.+.|++.+ .--..++..+.+.+..-.|.++++++.+.++..+..|.-..+..+..
T Consensus 11 ~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 11 RLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 3344444433 22344455555555555566666666555544444443333333333
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.01 E-value=2.3e+02 Score=30.30 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=59.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHhcCCCCCHHHHHHH
Q 007384 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD------RAREVYKMIHKYNIKGTPEVYTIA 275 (605)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 275 (605)
+|+.+|..+|++..+.++++.+.....+-+.-...+|..++...+.|.++ .|.+.++... +..|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999988887654343333456777777788888653 3334444333 45566788877
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 007384 276 INCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~ 297 (605)
+.+-...-+-.-..-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766654444444445555444
No 401
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.89 E-value=4.1e+02 Score=26.84 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=17.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHH
Q 007384 138 AKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAKAGQVA 179 (605)
Q Consensus 138 ~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~ 179 (605)
++.|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~ 49 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE 49 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 445555433 33334555554422 233444445556554
No 402
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.70 E-value=5.2e+02 Score=27.97 Aligned_cols=158 Identities=13% Similarity=0.145 Sum_probs=88.2
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHcCCCC---c-hHHHHHHHHHHHhhhHHHHHHHHHHhhCC----CCChh----hHHH
Q 007384 31 SYNRLI-RQGRISECIDLLEDMERKGLLD---M-DKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLS----TFNM 97 (605)
Q Consensus 31 ~~~~l~-~~g~~~~A~~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~----~~~~ 97 (605)
..+.|+ ...++++|...+.+....--.+ + --....++++++.+.+... |.+.+++.. ..... .+..
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 344455 6789999999999775432111 1 1122334556555544333 777766532 11111 2222
Q ss_pred H-HHHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcC---------CCCCH
Q 007384 98 L-MSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAG---------IEPNV 162 (605)
Q Consensus 98 l-l~~~~~~~~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g---------~~~~~ 162 (605)
+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+++.+..+.+.... ..|..
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 2 222333479999999998876532 2344555555555544 3455677777777764321 13456
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 007384 163 HTYGALIDGCA--KAGQVAKAFGAYGIMR 189 (605)
Q Consensus 163 ~~~~~li~~~~--~~g~~~~A~~~~~~m~ 189 (605)
.+|..+++.++ ..|+++.+...++++.
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777777654 5677667666655553
No 403
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.82 E-value=1.1e+02 Score=24.99 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLR 116 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~ 116 (605)
...|......+-..|++.+|.++|+
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555666777777777765
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.53 E-value=1.7e+02 Score=22.16 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=30.6
Q ss_pred HcCCChhHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 385 CDGDQLPKTMEVLSDMKS----LGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.+.|++.+|++.+.+.-+ .+..+. ......+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777655554432 221111 12233344556778889999888888775
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.50 E-value=2.2e+02 Score=24.96 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 007384 345 LMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34457777777777777777665
No 406
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.04 E-value=2.2e+02 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=21.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 007384 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (605)
Q Consensus 117 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 163 (605)
.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 334445444332 2234444444544455555555555544333333
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.69 E-value=1.6e+02 Score=25.99 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 372 PTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
|+...|..++..+...|+.++|.+...++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.60 E-value=6.3e+02 Score=28.28 Aligned_cols=227 Identities=14% Similarity=0.090 Sum_probs=113.8
Q ss_pred hccCCHHHHHHHHHHHhhCcC--CCCCC---HHHHHHHHH-HHHhcCChHHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 007384 208 GQSGAVDRAFDVLAEMNAEVH--PVDPD---HITIGALMK-ACANAGQVDRAREVYKMIHKY----NIKGTPEVYTIAIN 277 (605)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~--~~~~~---~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 277 (605)
....++++|..++.+....-. +..+. ...++.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 445788888888887654210 01111 112332221 223467888888877766543 22234566777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHH---HHHH--HHHHhcCCHH--HHHHHHHHHHHCC---C---CCChhHHHH
Q 007384 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFL---SALI--DFAGHAGKVE--AAFEILQEAKNQG---I---SVGIISYSS 344 (605)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li--~~~~~~g~~~--~a~~~~~~~~~~~---~---~~~~~~~~~ 344 (605)
+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +....|....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999998887766543222233322 2222 2344556333 2233333332221 0 122344555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCCC----CHHHHHHHH-
Q 007384 345 LMGACSNA-KNWQKALELYEHMKSIKLKPTVSTM--NALITALCDGDQLPKTMEVLSDMKSLGLCP----NTITYSILL- 416 (605)
Q Consensus 345 li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll- 416 (605)
+..++.+. +...++..-++--......|-.... ..|+......|+.++|...+.++......+ +-.+-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555551 1122222222222222111222222 256777888999999999888876532222 322222222
Q ss_pred -HHHHhcCCHHHHHHHHHH
Q 007384 417 -VACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 417 -~~~~~~g~~~~a~~~~~~ 434 (605)
......|+...+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 223457777777665544
No 409
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.79 E-value=2.8e+02 Score=29.63 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHH------HHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
+|+.+|..+|++..+.++++.+... |-+.=...+|..|+...+.|.++ .|.+++++. .+.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-----~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-----RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-----hcCCcchHHH
Confidence 8999999999999999999998764 33334567888899999999764 344444443 3567888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007384 239 ALMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
.++.+-...-+-....-++.....
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 777655443333333334444433
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.00 E-value=4.6e+02 Score=26.29 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 007384 279 CSQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGH--AGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~~~~~ 333 (605)
+.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33556666666666666554 332222 23333333332 34455666666655443
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.46 E-value=3.8e+02 Score=24.80 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHH
Q 007384 316 HAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKT 393 (605)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A 393 (605)
...+++.|..-+.+.+..+ |+. .-|+.=+.+|.+..+++.+..--.+..+. .||.+ ..-.+..++.....+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 3455666776555555543 444 33445555677777777776655555543 45543 333445556677778888
Q ss_pred HHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 394 MEVLSDMK----SLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (605)
Q Consensus 394 ~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 435 (605)
+..+.+.. .+.+.|-......|..+=-..=.+.+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88877763 2334444555666665544444445555555443
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.11 E-value=2.7e+02 Score=26.67 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----------cCCHHHH
Q 007384 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (605)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~a 216 (605)
.++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+++.+.... .-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4688888888888888888877777888888889999999887642 225555555543 4888888
Q ss_pred HHHHHHH
Q 007384 217 FDVLAEM 223 (605)
Q Consensus 217 ~~~~~~~ 223 (605)
+++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 8887653
No 413
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.72 E-value=4.4e+02 Score=25.32 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=37.2
Q ss_pred HHccCCHHHHHHHHH-HHHHCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 007384 279 CSQTGDWEFACSVYD-DMTKKGVIPDE----VFLSALIDFAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (605)
Q Consensus 279 ~~~~g~~~~A~~~~~-~m~~~~~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (605)
..+...+++.....+ +|.+.++ |+. ..|+.++++---..+-+ -|.+.+++ ..+|.-|+.+++..
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQ 334 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcC
Confidence 334444555544443 4555544 454 35666666543332211 12233332 34577788888888
Q ss_pred CCHHHHH
Q 007384 353 KNWQKAL 359 (605)
Q Consensus 353 g~~~~A~ 359 (605)
|+.+..+
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 8876554
No 414
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.50 E-value=79 Score=22.21 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (605)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (605)
...++.++..+++-.-.++++..+.+..+.| ..+..+|.--++.+
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSL 52 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3344444454444444455555555554444 23334443333333
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.48 E-value=79 Score=30.08 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (605)
|+..|..-.+.|++++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 445666666666666666666666665554333343
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.45 E-value=1.8e+02 Score=22.08 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHhCCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007384 102 CASSKDSEGAFQVLRLVQE----AGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (605)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~----~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (605)
..+.|++.+|.+.+....+ .+.... ....-.+.......|+.++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456677776554444332 221111 11222234445556666666666666543
No 417
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.32 E-value=1.7e+02 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=15.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 007384 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (605)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g 157 (605)
+++.+.+|.-.++|+++++.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455566666666666666666665
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=32.73 E-value=6.7e+02 Score=27.18 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=41.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHHHHHHHHHh---
Q 007384 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN--- 351 (605)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 351 (605)
...+.-.|+++.|.+.+.+ ..+...|.+.+...+..|.-..-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3456678999999988876 2223335566655555443222222111 2222211 01122567788888876
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007384 352 AKNWQKALELYEHMKSI 368 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~~ 368 (605)
..+..+|.+.|-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45678888888777654
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.24 E-value=94 Score=17.17 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 007384 39 GRISECIDLLEDMERKGLLDMDKVYHAR 66 (605)
Q Consensus 39 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 66 (605)
|+.+.|..+|+++.... |....++..
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~ 26 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLK 26 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHH
Confidence 46778888888888765 444444433
No 420
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=32.11 E-value=79 Score=22.28 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=24.8
Q ss_pred ccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMER 53 (605)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~ 53 (605)
.|.-..-.+..+|.|+..|++++|..+-...++
T Consensus 2 lpGad~l~~~~F~~l~~~g~y~eAA~~AA~sP~ 34 (66)
T PF13838_consen 2 LPGADDLYVQQFNELFSQGQYEEAAKVAANSPR 34 (66)
T ss_dssp -SS-HHHHHHHHHHHHHTT-HHHHHHHHHHSGG
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 455566778889999999999999988877664
No 421
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.71 E-value=1.2e+03 Score=29.74 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=90.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007384 98 LMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (605)
Q Consensus 98 ll~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (605)
+..+-.+++.+.+|...++.-..... .-....|..+...|+..+++|...-+...... .|+ .+ .-|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 33455667778888888877311100 11122344444588888888887777664221 232 22 334446678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHH-HHHHHhcCChHHHH
Q 007384 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAR 254 (605)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~ 254 (605)
|++..|...|+.+.+.+ ++...+++-++......|.+.......+..... ..+....++++ +.+--+.++++...
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 99999999999998875 444777887777777778887777666555432 22333333333 33445667777766
Q ss_pred HHHH
Q 007384 255 EVYK 258 (605)
Q Consensus 255 ~~~~ 258 (605)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 6655
No 422
>PRK12356 glutaminase; Reviewed
Probab=31.69 E-value=1.6e+02 Score=28.48 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHH
Q 007384 387 GDQLPKTMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN----------LVMFKCIIGMC 454 (605)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~----------~~~~~~li~~~ 454 (605)
.|.-..|+..| |++.|.-+ | ..+.......|+-....+..-.+..-+-..|+.|. ...-++++..|
T Consensus 167 t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TC 244 (319)
T PRK12356 167 TNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTME 244 (319)
T ss_pred hhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHc
Confidence 33344444333 44444332 2 23344444445444444444433333334455441 12233444444
Q ss_pred HhhHHHHHhh
Q 007384 455 SRRYEKARTL 464 (605)
Q Consensus 455 ~~~~~~a~~~ 464 (605)
+- |+.+|++
T Consensus 245 Gm-Yd~SG~f 253 (319)
T PRK12356 245 GL-YERSGDW 253 (319)
T ss_pred CC-ccchhhH
Confidence 43 6666664
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.40 E-value=1.1e+02 Score=29.24 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~ 124 (605)
|+..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 455555566666666666666666655543
No 424
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.36 E-value=2.9e+02 Score=22.49 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 392 KTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 392 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 434 (605)
++.++|..|..+|+--. ..-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554433 34455666666666666666666654
No 425
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.15 E-value=4.2e+02 Score=24.33 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.4
Q ss_pred CccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL 57 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~ 57 (605)
.+++++-.++..| ++..|+++.|+++.+-+++.|..
T Consensus 80 ~~qd~Vl~~~mvW--~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 80 GYQDDVLMTVMVW--RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred CCCCCeeeEeeee--eeeccCHHHHHHHHHHHHHcCCC
Confidence 4555555555555 66899999999999999998863
No 426
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=31.14 E-value=5.1e+02 Score=25.31 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007384 346 MGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (605)
...+...|+..++.++++...+
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 3334444555555555544443
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.01 E-value=25 Score=33.79 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 007384 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVF 150 (605)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 150 (605)
|.++.|+..|.... ++....|..-.+++.+.++...|..=+....+. .|| ...|-.--.+..-.|++++|...|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHHHH
Confidence 44555555554432 233333444444455555555555555544433 222 222333333334445666666666
Q ss_pred HHHHHcCCCCCH
Q 007384 151 HEMVNAGIEPNV 162 (605)
Q Consensus 151 ~~m~~~g~~~~~ 162 (605)
....+.++.+..
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 666555444333
No 428
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.81 E-value=1.2e+03 Score=29.63 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (605)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (605)
..+|....+.....|+++.|...+-...+.+ . +..+--...-....|+...|..++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777777888899998887777666655 2 344556667788889999999998887753
No 429
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.43 E-value=8.1e+02 Score=27.44 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 007384 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (605)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 106 (605)
.....|+.|+..|+++.|.++-..-++ .-.++...-+.++-+.+++..|.+.|.++ ..+|..+.--+....
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~p~-----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTRPD-----ALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEIN 430 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCCHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcC
Confidence 345679999999999999887653311 11223333445566677888888888876 334555544455555
Q ss_pred ChHHHHHHH
Q 007384 107 DSEGAFQVL 115 (605)
Q Consensus 107 ~~~~A~~~~ 115 (605)
+.+ ++..|
T Consensus 431 ~~~-~L~~~ 438 (911)
T KOG2034|consen 431 QER-ALRTF 438 (911)
T ss_pred CHH-HHHHH
Confidence 555 44433
No 430
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.33 E-value=8.8e+02 Score=27.82 Aligned_cols=248 Identities=17% Similarity=0.085 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (605)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (605)
.+|+.+-...+..+.+.+.. .+...+..+.+ .++..+-...+.++.+.+........+..+... +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 66777777788888887764 45555555554 456666666666665543322222333334332 466666666
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 007384 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (605)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (605)
+.++...+..+ ...+.. ... .+|..+-...+.++.+.+..+. + .... ..++..+-...+.++...+
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~-----D~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG-----DPDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc-----CCCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHHHHHHHHHhc
Confidence 66666543211 122333 332 4566666667777776655432 2 2222 2456677777777887777
Q ss_pred CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 007384 284 DWEF-ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (605)
Q Consensus 284 ~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (605)
..+. +...+..+... +|...-.+.+.++...|....+...+..+.+. ++..+-...+.++.+.+. +++...+
T Consensus 771 ~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 771 AGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred cccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHH
Confidence 6543 34555555443 46777788888888888766554445555443 456667777888888876 4566666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 363 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
..+.+ .|+...-...+.++.+.+....+...+....+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66664 57777777778888776445577777777765
No 431
>PRK10941 hypothetical protein; Provisional
Probab=30.00 E-value=4.8e+02 Score=24.67 Aligned_cols=59 Identities=14% Similarity=0.012 Sum_probs=33.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34445566666666666666666554 444444444445566666666666655555443
No 432
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.77 E-value=5.9e+02 Score=25.64 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNA--GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
.+.--|++.+.-.|+.....+.++.|.+. |-.|...+---+.-+|.-.+++.+|.+.|-...
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777766666666666542 222221111334455666777777777776654
No 433
>PRK10941 hypothetical protein; Provisional
Probab=29.69 E-value=4.9e+02 Score=24.63 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3334455555555555555554442 22333343333445555555555554444443
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.39 E-value=6e+02 Score=25.57 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
..+.-+...|...|+++.|++.|.+...- +.. ....+..+|..-...|++.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45777888888899999999998885442 111 1223444444555567777666666665543
No 435
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.22 E-value=6.1e+02 Score=25.58 Aligned_cols=60 Identities=17% Similarity=0.037 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007384 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
-.|++.+.-.|+.....+.++.+..+-.+..|...+---+.-+|.-.+++.+|.+.|-.+
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665543333333211122344455556666666666544
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.18 E-value=5.3e+02 Score=24.86 Aligned_cols=43 Identities=5% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (605)
++++.|.+.++.|.-..+..+.-.+.+.=.+...+.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555554445555555555555555543
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.00 E-value=1.2e+02 Score=21.39 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007384 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (605)
Q Consensus 89 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (605)
.|....++.++..+++..-.+.+...+......| .-+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3556677888888888888889999999998888 45677777777766654
No 438
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.81 E-value=5.7e+02 Score=25.11 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007384 390 LPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (605)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (605)
.++.+.++.+++.. .|+. .-|.+++......|.++..+.+|++++..|-.|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45777788877764 5664 3477788888888999999999999999999988888888887754
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.79 E-value=1e+02 Score=31.23 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCh
Q 007384 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDS 108 (605)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 108 (605)
.|.+++...++.|+.++.++++.+ |+.+.+...-.....+.+++..|+.=+.+..+-+ ...|---..+|.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 455667777888888888887776 5555444433333333344444443333322211 11222222334444555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 109 EGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 137 (605)
.+|+..|+.... +.|+..-....++-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 555555555543 245554444444433
No 440
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=5.2e+02 Score=24.56 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007384 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLL 57 (605)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~ 57 (605)
.++...|.+++..++++|++.+.++...|+.
T Consensus 5 ~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s 35 (421)
T COG5159 5 SSLELANNAVKSNDIEKAIGEYKRILGKGVS 35 (421)
T ss_pred chHHHHHHhhhhhhHHHHHHHHHHHhcCCCC
Confidence 4467788899999999999999999988763
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=5.7e+02 Score=24.88 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCH----H
Q 007384 340 ISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNT----I 410 (605)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 410 (605)
..+-....-|++-|+-+.|.+.+.... ..|.+.|++.+..=+. -|..+.-..+-++..+.+.+.|-..+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 345566778899999888888776654 3566667655544332 344444456667777777777755543 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 411 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+|..+- |....++.+|..+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 454443 4456688888888876654
No 442
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=5e+02 Score=24.15 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc------CCCCchH-------HHHHHHHHH---HhhhHHHHHHHHHHhhCC---CCC
Q 007384 31 SYNRLIRQGRISECIDLLEDMERK------GLLDMDK-------VYHARFFNV---CKSQKAIKEAFRFFKLVP---NPT 91 (605)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~------~~~~~~~-------~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~ 91 (605)
--|.|.+.|++.+|...|.+.+-. .-.|+.. ....+++.+ ....|++-++++....+. +.|
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n 263 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN 263 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch
Confidence 346788999999998888775421 0012222 122222222 223344444444444432 334
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQE 120 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 120 (605)
+..|-.-..+.+..-+.++|..=|..+++
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 44555445555555555555555555554
No 443
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.74 E-value=2.7e+02 Score=22.99 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=26.3
Q ss_pred CccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL 57 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~ 57 (605)
.+++++-.++..| ++..|+++.|+++.+-+++.|..
T Consensus 45 g~qd~Vl~~~mvW--~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 45 GAQDDVLMTVMVW--LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred CCcCchHHhhHhh--hhcccCHHHHHHHHHHHHHcCCC
Confidence 4455555555555 56889999999999988888763
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.58 E-value=6.4e+02 Score=25.31 Aligned_cols=54 Identities=20% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChh--HHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGII--SYSSLMGAC--SNAKNWQKALELYEHMKS 367 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~--~~~g~~~~A~~~~~~m~~ 367 (605)
...+.+++..|.+++..+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344789999999999999887 555444 455555655 457788999999998875
No 445
>PRK12798 chemotaxis protein; Reviewed
Probab=27.49 E-value=6.6e+02 Score=25.42 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007384 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG-QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (605)
.|+..++.+.+..+.....++....+-.|+.+-. ...+...|+.+|+...-..+|.-.......--+-.....|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5777777777777766655666666666665543 335667777777776543222111122222233445566666665
Q ss_pred HHHHHHH
Q 007384 254 REVYKMI 260 (605)
Q Consensus 254 ~~~~~~~ 260 (605)
..+-..-
T Consensus 205 ~~la~~Y 211 (421)
T PRK12798 205 EALARNY 211 (421)
T ss_pred HHHHHHH
Confidence 5544433
No 446
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.14 E-value=2.6e+02 Score=21.16 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 007384 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (605)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 107 (605)
.+++.+...|+..... .. .+-......+.+.++++.++...+.+|..+..++-..+.
T Consensus 24 ~v~~~L~~~gvlt~~~-~~----~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDILTDSM-AE----SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCCCHHH-HH----HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 4677777777653321 11 111222345667777777777777777777777655443
No 447
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.17 E-value=5.7e+02 Score=24.22 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 007384 357 KALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (605)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 404 (605)
.|...|.+....+ +......+...|.. ..+..+|...|....+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555555543 23333333333322 234566666666666554
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.42 E-value=3.9e+02 Score=23.13 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007384 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (605)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (605)
+..-.|.++++.+.+.+...+..|.-..|..+...
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 33344455555554444444444333333333333
No 449
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.02 E-value=5.8e+02 Score=25.08 Aligned_cols=68 Identities=7% Similarity=0.096 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007384 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (605)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (605)
.++++.+++++...-+...--.--|..++......|.++..+.+|+++...|..|-...-.++++.+-
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34555555555543111111123456666677777777777777777777777666555555555433
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.43 E-value=4.3e+02 Score=22.81 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=28.3
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007384 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (605)
Q Consensus 119 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (605)
.+.|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344544443322 33333334444555666666666555444544444444555555543
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.36 E-value=3.7e+02 Score=25.00 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=32.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhC---cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007384 202 ALITACGQSGAVDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
.+..-|.+.|++++|.++|+.+... ..=..+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555666666777666666665321 0012344455556666666777766665554433
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.33 E-value=7.4e+02 Score=24.96 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
..+.-+.+.|..+|+++.|++.|.+...-- .+.....|-.+|..-.-.|++........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345667777888888888888887754320 111233455555555566776666666555443
No 453
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.26 E-value=9.9e+02 Score=26.40 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=63.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (605)
-+.+.+.+++|+.+.+... |..| -...+...|+.+.-.|++++|-...-.|.. -+..-|.--+.-+...++
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 3566777888887776554 2233 344667778888888888888888877773 366667777766666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007384 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (605)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (605)
...... -+....-..+...|..++..+..
T Consensus 439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 544332 23332222456677777777665
No 454
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.17 E-value=9e+02 Score=25.87 Aligned_cols=261 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 007384 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (605)
Q Consensus 78 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (605)
+-+....+.+..+....+..|++.+... +.+.-.++++.+.. .. ...+..++++....|......-+.+.+....
T Consensus 296 ~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 296 HLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCH------HHHHHHHHHH
Q 007384 158 IEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAV------DRAFDVLAEM 223 (605)
Q Consensus 158 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~------~~a~~~~~~~ 223 (605)
+.+ .....-..+-.....-..+-...+++-+......+.. .++..+++-+|..... ++..+.+.+.
T Consensus 371 ~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~ 450 (574)
T smart00638 371 ITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHEL 450 (574)
T ss_pred CCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q ss_pred hhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHCCCC
Q 007384 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--GDWEFACSVYDDMTKKGVI 301 (605)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~ 301 (605)
... ..-..|..--...+.+..+.|.......+-..+. .....+...-...+.++-+. ...+.+..++-.+-...-.
T Consensus 451 l~~-~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e 528 (574)
T smart00638 451 LQQ-AVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAE 528 (574)
T ss_pred HHH-HHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCC
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhHHHHH
Q 007384 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSL 345 (605)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l 345 (605)
+...-..+++......-.......+...+... +......+|+.|
T Consensus 529 ~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 529 PPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 455
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=23.97 E-value=2.9e+02 Score=31.54 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=46.1
Q ss_pred CccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (605)
.|+.+.. -+..|..|-....+.++.++|..|...++......++......+.+.+.+.+|..+|....
T Consensus 74 ~Y~nD~R-fl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Gi 141 (974)
T KOG1166|consen 74 RYRNDPR-FLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGI 141 (974)
T ss_pred hccccHH-HHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 3334444445667788888888888888777777777777777777777888888877654
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.93 E-value=5.8e+02 Score=23.57 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=37.1
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHcCCChhH
Q 007384 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-K-----------LKPTVSTMNALITALCDGDQLPK 392 (605)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~ 392 (605)
++.+-....+++-+.....+++ +...|++.+|..-++.-... | -.|.+.....++..|. .+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHH
Confidence 3333333444444444444443 45567766666655543320 0 0344444444444332 244555
Q ss_pred HHHHHHHHHhCCCCC
Q 007384 393 TMEVLSDMKSLGLCP 407 (605)
Q Consensus 393 A~~~~~~m~~~g~~p 407 (605)
|.+++.++-+.|..|
T Consensus 257 A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 257 ALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHHHHcCCCH
Confidence 555555555555444
No 457
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.56 E-value=3.2e+02 Score=21.72 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=13.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 311 IDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
++...++...++|+++++.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444455555566666666666555
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.52 E-value=1.2e+02 Score=17.82 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH
Q 007384 424 DVEVGLMLLSQAKEDGVIPNLVMFK 448 (605)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (605)
.++.|+.+|++.+. +.|++.+|-
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHH
Confidence 46778888888877 457766654
No 459
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.44 E-value=5.9e+02 Score=23.51 Aligned_cols=98 Identities=19% Similarity=0.273 Sum_probs=60.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CC-----------CCCCHHHHHHH
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LG-----------LCPNTITYSIL 415 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g-----------~~p~~~t~~~l 415 (605)
-|.+..+.+--.++.+-....+++-+..-..+++ +...|+..+|+.-++.-.. .| -.|.+.....+
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 3555555444444444444444444433333333 3456777777666554321 11 14777777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007384 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (605)
Q Consensus 416 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (605)
+..|.. +++++|.+++.++.+.|+.|...+.+
T Consensus 246 l~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~ 277 (333)
T KOG0991|consen 246 LQACLK-RNIDEALKILAELWKLGYSPEDIITT 277 (333)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 877765 68999999999999999999876554
No 460
>PRK12798 chemotaxis protein; Reviewed
Probab=23.39 E-value=7.9e+02 Score=24.90 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=84.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCH
Q 007384 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA-KAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAV 213 (605)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~ 213 (605)
-.|+.+++.+.+..+.....++....+-.|+.+-. ...+...|+.+|+...-. .|-+. ...--+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 46888999999988877766777777877777644 456889999999887644 33322 333344556778888
Q ss_pred HHHHHHHHHHhhCcCCCCCCHH-HHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007384 214 DRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (605)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (605)
+++..+-.+..... ...|-.. .+..+...+.+..+ .+.-..++..| +-..-...|..+...-.-.|+.+-|.
T Consensus 202 ~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~---d~~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 202 DKFEALARNYLRRF-RHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFM---DPERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhc---CchhHHHHHHHHHHHHHHcCcHHHHH
Confidence 87766555444321 1122111 12222233333332 22222222222 11112345666666666666666666
Q ss_pred HHHHHHHH
Q 007384 290 SVYDDMTK 297 (605)
Q Consensus 290 ~~~~~m~~ 297 (605)
..-.+...
T Consensus 278 ~As~~A~~ 285 (421)
T PRK12798 278 FASERALK 285 (421)
T ss_pred HHHHHHHH
Confidence 55555443
No 461
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=23.25 E-value=8.6e+02 Score=25.31 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 007384 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL---CDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLV 417 (605)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~ 417 (605)
-+.+++-+.+.|-..+|+.++..+.... +|+...|..+|..- ..+| ..-+..+++.|.. .| .|+..|.-.+.
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 3566777777788888888888777653 56667777666532 2222 5566666766654 34 55566666665
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007384 418 ACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~ 437 (605)
--...|..+.+-.++.++.+
T Consensus 539 ~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hhccCCCcccccHHHHHHHH
Confidence 55566776666666665554
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.20 E-value=2.5e+02 Score=28.65 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=47.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCh
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIIS-YSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQL 390 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~ 390 (605)
.....+.++.|..++.++.+.. ||-.. |..=..++.+.+++..|..=+....+.. |+ ...|--=..++...+++
T Consensus 13 ~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 3344555666666666665543 32222 2222245556666666655555555432 22 11121122223333444
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007384 391 PKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (605)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 421 (605)
.+|+..|+.... +.|+..-+...+.-|-+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 444444444433 45655555555544443
No 463
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.09 E-value=4.2e+02 Score=21.61 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 392 KTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLS 433 (605)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~ 433 (605)
+..++|..|..+|+--.. .-|......+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345566666665544332 334455555566666666666654
No 464
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.78 E-value=5.5e+02 Score=22.85 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=7.2
Q ss_pred cCCHHHHHHHHHHHH
Q 007384 317 AGKVEAAFEILQEAK 331 (605)
Q Consensus 317 ~g~~~~a~~~~~~~~ 331 (605)
.|+++.|.++++-|.
T Consensus 134 ~~~~~~Ae~~~~~ME 148 (204)
T COG2178 134 KGSFEEAERFLKFME 148 (204)
T ss_pred hccHHHHHHHHHHHH
Confidence 344555555444444
No 465
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.77 E-value=3.4e+02 Score=20.47 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 007384 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (605)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (605)
+.|......+...+...|++++|++.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334455555555556666666666655555544
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.71 E-value=4.4e+02 Score=24.44 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=10.1
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 007384 240 LMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~ 260 (605)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444555555555555444
No 467
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.67 E-value=9.2e+02 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=11.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 007384 202 ALITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~ 223 (605)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3444555555555555555554
No 468
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=22.35 E-value=8.5e+02 Score=24.90 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (605)
...|+.-|...|...+|...++++- ++- -.+.+.+++.+..+.|+-..-+.+++...+.|+ .|-+.|-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh
Confidence 3567888999999999998887753 322 356788999999999998877777777776654 4556666666
Q ss_pred Hh
Q 007384 455 SR 456 (605)
Q Consensus 455 ~~ 456 (605)
.|
T Consensus 585 ~R 586 (645)
T KOG0403|consen 585 ER 586 (645)
T ss_pred hh
Confidence 55
No 469
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.29 E-value=6.2e+02 Score=23.33 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGDWEFACSVYDDMT 296 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 296 (605)
++..+-+.|+++++...++++...+...+..-.+.|-.+|-. -|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 556666777777777777777776656666666666665532 244445555555444
No 470
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.19 E-value=3.5e+02 Score=20.35 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007384 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (605)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (605)
++|+.....|+..|+.+|..+++.+.-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555566666666666666665544444555555555554
No 471
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=21.97 E-value=1e+02 Score=21.54 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=23.0
Q ss_pred cccccCchhHHHHHHHHHHhCCCCCcccc
Q 007384 544 IDGFGEYDPRAFSLLEEAASFGIVPCVSF 572 (605)
Q Consensus 544 i~~~g~~~~~a~~~~~~a~~~g~~p~~~~ 572 (605)
+..-+|..++|...|++..+.|-+|...|
T Consensus 34 Le~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 34 LEDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 34447888999999999988888887654
No 472
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.95 E-value=7.2e+02 Score=23.91 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHH---------HHHcCCCCC--
Q 007384 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-----KVDAMFEVFHE---------MVNAGIEPN-- 161 (605)
Q Consensus 99 l~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~---------m~~~g~~~~-- 161 (605)
+-++++.|..+ ...+++.+... .-.++...|..++..+.... ..+.....|+. +.+.|.++.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCC
Q 007384 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (605)
Q Consensus 162 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (605)
......+++.. ..... ...|.+.|+.....+. ..+......++....+.|+.+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHH
Q 007384 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (605)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 294 (605)
++......++.+.+...+.+...++++.+...+..+.......+.... ....-.+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.29 E-value=3.7e+02 Score=20.99 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 007384 345 LMGACSNAKNWQKALELYEHM 365 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m 365 (605)
++.-|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444455555555555443
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=4e+02 Score=29.72 Aligned_cols=108 Identities=11% Similarity=0.160 Sum_probs=50.6
Q ss_pred chhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 007384 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (605)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 103 (605)
++.+.-+.|..-+-+.++++.+.+.+...--| ..++.+..+.|-.+-|+.+.+ |..+ -...+.
T Consensus 592 ~IDptEy~FKlALi~k~ydeVl~lI~ns~LvG---------qaiIaYLqKkgypeiAL~FVk-----D~~t---RF~LaL 654 (1202)
T KOG0292|consen 592 TIDPTEYRFKLALLNKKYDEVLHLIKNSNLVG---------QAIIAYLQKKGYPEIALHFVK-----DERT---RFELAL 654 (1202)
T ss_pred eechHHHHHHHHHHhhhhHHHHHHHHhcCccc---------HHHHHHHHhcCCcceeeeeec-----Ccch---heeeeh
Confidence 45566666666666677777766655432222 122233333333333332221 1111 112234
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007384 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (605)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (605)
..|+++.|++.-..+ .|..+|..|.....+.|+.+-|+..|+...
T Consensus 655 e~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 455555555543332 244555555555555565555555555443
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.11 E-value=2.7e+02 Score=21.92 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 417 VACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
..+...+..-.|.++++.+.+.+...+..
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~ 36 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLA 36 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHH
Confidence 33333344444555555555544444433
No 476
>PRK09857 putative transposase; Provisional
Probab=21.11 E-value=7.4e+02 Score=23.76 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (605)
+..++.-..+.++.++..++++.+.+. .+......-++..-+.+.|..++++++-.+|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344444444556555556666555543 12223333344455555555555666666666666543
No 477
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.06 E-value=1.1e+03 Score=25.95 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=29.6
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 286 EFACSVYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 286 ~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
++....+... ...|+..+......++... .|++..++.+++++...
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4445555444 3457766777676666554 58888888888776653
No 478
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=20.84 E-value=2.6e+02 Score=20.10 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=26.8
Q ss_pred CchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 007384 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDM 59 (605)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 59 (605)
.+....+.+|..+++..+++.+...+..-...+..|+
T Consensus 27 ~~~k~~v~~W~~~L~d~~ye~v~~al~~~i~~~kfPP 63 (71)
T PF11417_consen 27 TDSKETVDLWYDMLKDYDYEIVMKALKKHIATNKFPP 63 (71)
T ss_dssp STHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-SS--
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Confidence 3445678999999999999999999988776654444
No 479
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=6.1e+02 Score=22.58 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=9.8
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007384 421 RKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 421 ~~g~~~~a~~~~~~~~~ 437 (605)
+.|+++.|.+.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666655543
No 480
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.41 E-value=7.6e+02 Score=23.61 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 007384 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (605)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (605)
++..+.+.++.....+.+..+.. ...-...+..+...|++..|++++.+..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444445555555555555442 2333445555666677777777666554
No 481
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=20.00 E-value=1.4e+03 Score=26.36 Aligned_cols=261 Identities=11% Similarity=-0.040 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
.+|..+-...+..+.+.+..+ +...+..+.+. ++...-...+.++.+.+........+..+.. .+|..+-.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~-----~~d~~VR~ 702 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG-----SPDPVVRA 702 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc-----CCCHHHHH
Confidence 578888888888888887644 55555555543 3444444555555544332222233333433 25656666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
..+.++...+..+ ...+.. ..+ .++..+-...+.++.+.+..+. +..... .++...-.....++...+
T Consensus 703 ~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 703 AALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhc
Confidence 6667666554222 222323 222 4566777777788777665432 222222 346666666777777776
Q ss_pred CHHH-HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 007384 319 KVEA-AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (605)
Q Consensus 319 ~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 397 (605)
..+. +...+..+.+ .++..+-.+.+.++.+.|....+...+..+.+ .++...-...+.++...+. +++...+
T Consensus 771 ~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 771 AGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred cccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5442 3455555544 35688888999999999987665455555554 4566666667788887775 5677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 398 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
..+.+ .|+...-...+.++.+......+...+..+.+ ++|..+-.....+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~a 893 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRA 893 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 77775 57777777788888886444567777777775 3455444444333
Done!