Query 007384
Match_columns 605
No_of_seqs 749 out of 3941
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 00:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-35 6.1E-40 316.7 42.7 416 27-456 82-562 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.3E-34 1.8E-38 305.3 42.7 398 31-444 123-583 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.4E-30 8.3E-35 265.8 25.7 205 252-456 8-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3E-27 1E-31 238.5 48.0 377 33-423 7-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.2E-29 4.2E-34 260.6 25.5 187 236-422 28-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-26 1.9E-30 229.2 46.5 363 69-444 7-372 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.3E-22 2.2E-26 203.6 39.8 333 90-434 24-405 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4.2E-26 201.5 40.4 320 111-445 11-363 (450)
9 2gw1_A Mitochondrial precursor 99.9 6.7E-22 2.3E-26 207.0 37.5 405 29-447 10-485 (514)
10 2gw1_A Mitochondrial precursor 99.9 2.5E-21 8.4E-26 202.7 37.8 376 25-412 39-485 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.6E-25 199.2 37.3 392 31-438 31-491 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 2.3E-18 8E-23 170.8 40.9 318 91-443 2-338 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 4.1E-18 1.4E-22 169.1 41.9 320 126-484 2-345 (359)
14 3fp2_A TPR repeat-containing p 99.9 3.6E-18 1.2E-22 179.7 41.4 377 61-454 25-472 (537)
15 3hym_B Cell division cycle pro 99.8 1.3E-17 4.4E-22 163.5 33.2 286 90-384 20-314 (330)
16 3hym_B Cell division cycle pro 99.8 8E-18 2.7E-22 165.0 31.5 292 124-425 19-321 (330)
17 2ooe_A Cleavage stimulation fa 99.8 4.2E-16 1.4E-20 163.5 44.5 408 21-437 9-491 (530)
18 2xm6_A Protein corresponding t 99.8 4E-15 1.4E-19 154.4 49.3 365 44-441 26-435 (490)
19 2xm6_A Protein corresponding t 99.8 5.1E-15 1.8E-19 153.6 48.4 351 24-404 38-433 (490)
20 1fch_A Peroxisomal targeting s 99.8 1.2E-17 4.2E-22 166.6 24.4 322 38-399 14-355 (368)
21 1fch_A Peroxisomal targeting s 99.8 1.3E-17 4.3E-22 166.5 24.2 302 105-436 38-357 (368)
22 2ooe_A Cleavage stimulation fa 99.8 1.5E-14 5.2E-19 151.7 44.5 396 48-453 2-472 (530)
23 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.8E-22 166.0 20.1 264 163-434 66-352 (365)
24 4eqf_A PEX5-related protein; a 99.8 9.7E-17 3.3E-21 159.9 26.0 267 90-363 63-351 (365)
25 3mkr_A Coatomer subunit epsilo 99.8 6.1E-16 2.1E-20 148.2 28.4 257 30-300 4-266 (291)
26 3cv0_A Peroxisome targeting si 99.8 3.2E-16 1.1E-20 153.3 26.9 279 91-399 20-311 (327)
27 1b89_A Protein (clathrin heavy 99.7 1.5E-16 5.2E-21 155.7 23.4 290 29-361 6-304 (449)
28 3spa_A Mtrpol, DNA-directed RN 99.7 5.2E-18 1.8E-22 178.9 12.4 119 304-422 127-249 (1134)
29 3cv0_A Peroxisome targeting si 99.7 7.3E-16 2.5E-20 150.7 26.8 277 129-437 23-314 (327)
30 1b89_A Protein (clathrin heavy 99.7 1.3E-17 4.5E-22 163.2 13.6 309 72-427 14-330 (449)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.7E-22 176.5 13.4 150 92-248 127-286 (1134)
32 4g1t_A Interferon-induced prot 99.7 5.4E-15 1.8E-19 152.8 31.5 360 60-438 50-459 (472)
33 3mkr_A Coatomer subunit epsilo 99.7 5.5E-15 1.9E-19 141.5 27.7 246 173-437 10-263 (291)
34 4g1t_A Interferon-induced prot 99.7 3.9E-14 1.3E-18 146.3 31.6 357 37-412 63-469 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 2.3E-12 8E-17 140.6 45.9 373 31-462 991-1375(1630)
36 1xi4_A Clathrin heavy chain; a 99.6 2.2E-12 7.4E-17 140.9 41.3 339 32-423 1056-1415(1630)
37 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4.2E-18 129.7 25.4 57 165-223 8-64 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 9.5E-14 3.3E-18 141.9 25.0 344 29-404 7-388 (452)
39 3uq3_A Heat shock protein STI1 99.6 2.4E-13 8.3E-18 127.6 25.2 222 129-366 7-234 (258)
40 2pl2_A Hypothetical conserved 99.6 1.4E-13 4.9E-18 125.7 22.2 192 199-398 7-209 (217)
41 2pl2_A Hypothetical conserved 99.6 1.2E-13 4E-18 126.3 21.6 199 231-436 2-212 (217)
42 2ho1_A Type 4 fimbrial biogene 99.6 2E-12 6.7E-17 121.1 26.5 199 235-437 38-237 (252)
43 2h6f_A Protein farnesyltransfe 99.6 1.6E-12 5.4E-17 128.8 26.8 246 92-347 97-361 (382)
44 3u4t_A TPR repeat-containing p 99.6 1.1E-12 3.7E-17 124.5 24.6 231 168-402 9-249 (272)
45 2vq2_A PILW, putative fimbrial 99.5 3.6E-12 1.2E-16 116.8 27.0 197 130-330 11-208 (225)
46 2ho1_A Type 4 fimbrial biogene 99.5 4.8E-12 1.6E-16 118.5 28.4 200 92-297 37-237 (252)
47 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.3E-17 127.1 27.1 248 127-384 97-363 (382)
48 2vq2_A PILW, putative fimbrial 99.5 6.3E-12 2.2E-16 115.1 27.7 204 90-299 6-212 (225)
49 3u4t_A TPR repeat-containing p 99.5 2.3E-12 7.7E-17 122.2 24.9 229 134-368 10-250 (272)
50 2q7f_A YRRB protein; TPR, prot 99.5 8.7E-13 3E-17 122.7 21.4 202 91-299 22-223 (243)
51 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.8E-13 1.6E-17 127.0 19.4 182 106-295 19-203 (275)
52 1ouv_A Conserved hypothetical 99.5 3.6E-11 1.2E-15 114.0 32.4 220 199-438 8-251 (273)
53 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.7E-17 122.0 21.1 130 270-402 92-221 (243)
54 1ouv_A Conserved hypothetical 99.5 5.4E-11 1.8E-15 112.8 33.2 222 162-403 6-251 (273)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.2E-13 1.5E-17 127.4 17.6 224 92-327 43-269 (275)
56 4e6h_A MRNA 3'-END-processing 99.5 3.5E-10 1.2E-14 119.5 40.8 418 28-454 65-584 (679)
57 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-12 1.1E-16 130.4 24.7 342 67-440 9-389 (452)
58 3vtx_A MAMA; tetratricopeptide 99.4 2.9E-11 1E-15 107.0 22.6 165 234-402 5-169 (184)
59 3sf4_A G-protein-signaling mod 99.4 3.4E-12 1.2E-16 128.6 18.5 302 91-425 8-363 (406)
60 4a1s_A PINS, partner of inscut 99.4 6.1E-12 2.1E-16 127.2 19.3 277 129-438 50-372 (411)
61 2ond_A Cleavage stimulation fa 99.4 2.6E-10 9E-15 110.1 29.8 219 214-438 33-270 (308)
62 3vtx_A MAMA; tetratricopeptide 99.4 3.5E-11 1.2E-15 106.6 21.7 174 268-447 4-177 (184)
63 3sf4_A G-protein-signaling mod 99.4 7.1E-12 2.4E-16 126.2 19.0 281 125-438 7-336 (406)
64 4a1s_A PINS, partner of inscut 99.4 6.2E-12 2.1E-16 127.1 18.6 236 94-330 50-329 (411)
65 3ro2_A PINS homolog, G-protein 99.4 1.2E-11 4E-16 120.9 19.1 97 341-437 225-331 (338)
66 2ond_A Cleavage stimulation fa 99.4 3.6E-10 1.2E-14 109.2 29.1 217 109-333 33-270 (308)
67 4e6h_A MRNA 3'-END-processing 99.4 9.1E-09 3.1E-13 108.8 40.8 393 41-439 48-534 (679)
68 3ro2_A PINS homolog, G-protein 99.4 1.6E-11 5.4E-16 120.0 18.0 276 95-402 8-331 (338)
69 3ulq_A Response regulator aspa 99.4 5.3E-11 1.8E-15 119.0 22.2 309 22-366 9-366 (383)
70 3ulq_A Response regulator aspa 99.4 1.1E-10 3.6E-15 116.9 24.2 232 203-437 109-367 (383)
71 4abn_A Tetratricopeptide repea 99.3 5.4E-11 1.9E-15 122.3 21.4 225 108-366 84-319 (474)
72 4abn_A Tetratricopeptide repea 99.3 4.1E-11 1.4E-15 123.2 19.9 216 177-401 83-319 (474)
73 3nf1_A KLC 1, kinesin light ch 99.3 7.3E-12 2.5E-16 121.1 12.5 175 93-297 28-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.3 8.3E-12 2.8E-16 120.7 11.5 246 163-437 28-306 (311)
75 3q15_A PSP28, response regulat 99.3 2.8E-09 9.7E-14 106.2 27.0 230 203-437 107-364 (378)
76 1hz4_A MALT regulatory protein 99.2 4.1E-09 1.4E-13 104.8 28.0 266 171-437 23-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.2 9.1E-10 3.1E-14 97.0 20.1 93 342-436 79-171 (186)
78 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.7E-14 96.5 20.0 166 234-403 8-173 (186)
79 1hz4_A MALT regulatory protein 99.2 7.8E-09 2.7E-13 102.7 27.6 231 100-330 22-279 (373)
80 3q15_A PSP28, response regulat 99.2 4.4E-09 1.5E-13 104.8 25.2 232 167-402 106-364 (378)
81 4gyw_A UDP-N-acetylglucosamine 99.2 1.3E-09 4.3E-14 116.7 21.4 165 234-402 9-173 (723)
82 4i17_A Hypothetical protein; T 99.2 2.9E-09 9.8E-14 97.7 21.1 200 232-445 5-214 (228)
83 4i17_A Hypothetical protein; T 99.2 4.9E-09 1.7E-13 96.2 21.4 204 194-412 4-216 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.1 1.5E-09 5.3E-14 116.1 20.2 165 268-437 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.1 2.2E-09 7.5E-14 101.8 15.5 124 139-262 13-155 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.5E-14 103.3 13.2 230 208-437 12-280 (283)
87 1qqe_A Vesicular transport pro 99.0 2.2E-08 7.5E-13 95.7 19.4 131 236-366 79-226 (292)
88 2fo7_A Synthetic consensus TPR 99.0 2.8E-08 9.5E-13 82.0 17.0 126 273-401 5-130 (136)
89 3dra_A Protein farnesyltransfe 99.0 2.3E-07 7.7E-12 88.1 24.3 238 20-262 27-286 (306)
90 2fo7_A Synthetic consensus TPR 99.0 4.6E-08 1.6E-12 80.7 17.5 127 95-224 4-130 (136)
91 3qky_A Outer membrane assembly 98.9 6.9E-08 2.4E-12 90.5 19.9 189 232-444 13-228 (261)
92 3qky_A Outer membrane assembly 98.9 5E-08 1.7E-12 91.5 18.7 99 126-225 14-125 (261)
93 3urz_A Uncharacterized protein 98.9 5.2E-08 1.8E-12 87.8 18.0 136 310-451 60-197 (208)
94 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.4E-12 88.8 21.0 180 111-299 85-283 (310)
95 1qqe_A Vesicular transport pro 98.9 2.7E-08 9.4E-13 95.0 16.7 207 212-437 32-268 (292)
96 3urz_A Uncharacterized protein 98.9 4.3E-08 1.5E-12 88.4 16.9 171 236-415 6-196 (208)
97 2pzi_A Probable serine/threoni 98.9 3.3E-08 1.1E-12 106.2 17.9 171 36-212 402-583 (681)
98 3mv2_B Coatomer subunit epsilo 98.9 8.4E-07 2.9E-11 83.3 25.1 244 173-444 24-286 (310)
99 2uy1_A Cleavage stimulation fa 98.9 1.2E-06 4.3E-11 89.7 28.8 101 38-155 7-117 (493)
100 2r5s_A Uncharacterized protein 98.9 2.9E-08 9.8E-13 86.9 14.1 165 22-189 3-171 (176)
101 3dra_A Protein farnesyltransfe 98.8 2.7E-06 9.2E-11 80.7 26.9 219 106-331 47-285 (306)
102 4ga2_A E3 SUMO-protein ligase 98.8 5E-08 1.7E-12 82.7 13.3 143 67-212 3-149 (150)
103 3qou_A Protein YBBN; thioredox 98.8 1E-07 3.5E-12 90.7 16.8 160 26-188 118-281 (287)
104 2pzi_A Probable serine/threoni 98.8 4E-08 1.4E-12 105.6 14.9 173 138-318 402-582 (681)
105 2r5s_A Uncharacterized protein 98.8 7.4E-08 2.5E-12 84.2 13.4 159 239-401 11-171 (176)
106 3rjv_A Putative SEL1 repeat pr 98.8 1E-06 3.6E-11 79.4 21.3 173 111-299 5-198 (212)
107 3qou_A Protein YBBN; thioredox 98.8 1.9E-07 6.4E-12 88.9 16.9 166 124-296 114-282 (287)
108 4ga2_A E3 SUMO-protein ligase 98.8 3E-08 1E-12 84.1 9.5 53 313-366 40-92 (150)
109 3rjv_A Putative SEL1 repeat pr 98.7 1.1E-06 3.7E-11 79.3 20.2 176 145-334 4-198 (212)
110 2yhc_A BAMD, UPF0169 lipoprote 98.7 8.7E-07 3E-11 80.8 19.4 202 127-368 4-213 (225)
111 2yhc_A BAMD, UPF0169 lipoprote 98.7 9.8E-07 3.4E-11 80.5 19.5 204 161-403 3-213 (225)
112 2vsy_A XCC0866; transferase, g 98.7 2.8E-07 9.7E-12 97.1 18.0 154 210-369 2-158 (568)
113 2vsy_A XCC0866; transferase, g 98.7 5.7E-07 1.9E-11 94.8 18.9 153 247-403 2-157 (568)
114 3q7a_A Farnesyltransferase alp 98.6 2.7E-05 9.4E-10 74.6 26.4 182 96-284 58-257 (349)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.6E-06 8.9E-11 76.7 18.7 126 65-192 10-151 (213)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 1.5E-06 5E-11 83.6 17.2 199 175-401 4-222 (307)
117 2uy1_A Cleavage stimulation fa 98.6 8.9E-05 3E-09 75.9 31.0 354 37-437 26-412 (493)
118 2ifu_A Gamma-SNAP; membrane fu 98.6 1.1E-06 3.9E-11 84.4 15.7 229 37-291 3-254 (307)
119 3q7a_A Farnesyltransferase alp 98.5 6.4E-05 2.2E-09 72.0 26.5 174 139-319 66-257 (349)
120 1na0_A Designed protein CTPR3; 98.5 3.4E-06 1.2E-10 68.0 15.4 98 92-191 9-106 (125)
121 3dss_A Geranylgeranyl transfer 98.5 5.3E-05 1.8E-09 72.2 25.3 184 37-225 41-266 (331)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.5 9.5E-06 3.3E-10 72.9 19.5 127 201-334 10-151 (213)
123 3u3w_A Transcriptional activat 98.5 1.9E-05 6.5E-10 75.2 21.8 126 312-437 123-265 (293)
124 1a17_A Serine/threonine protei 98.5 5.6E-06 1.9E-10 70.9 16.4 127 94-223 15-143 (166)
125 4gco_A Protein STI-1; structur 98.5 5E-06 1.7E-10 67.7 15.1 97 93-191 14-110 (126)
126 1a17_A Serine/threonine protei 98.5 7.1E-06 2.4E-10 70.2 16.7 93 238-332 17-109 (166)
127 2e2e_A Formate-dependent nitri 98.4 2.8E-06 9.4E-11 74.0 13.6 120 316-438 22-144 (177)
128 1na0_A Designed protein CTPR3; 98.4 9E-06 3.1E-10 65.5 15.9 93 237-331 12-104 (125)
129 4gco_A Protein STI-1; structur 98.4 7.1E-06 2.4E-10 66.8 15.1 91 240-332 19-109 (126)
130 4f3v_A ESX-1 secretion system 98.4 8.4E-06 2.9E-10 75.5 17.1 199 246-452 18-249 (282)
131 3u3w_A Transcriptional activat 98.4 1.1E-05 3.7E-10 76.9 18.6 205 185-401 34-264 (293)
132 2c2l_A CHIP, carboxy terminus 98.4 8.2E-07 2.8E-11 84.1 10.5 96 235-332 5-100 (281)
133 4f3v_A ESX-1 secretion system 98.4 2.1E-05 7.3E-10 72.8 19.5 188 104-299 18-238 (282)
134 3gyz_A Chaperone protein IPGC; 98.4 1.9E-06 6.5E-11 72.6 11.4 99 91-191 35-133 (151)
135 2qfc_A PLCR protein; TPR, HTH, 98.4 1.9E-05 6.6E-10 75.1 19.8 167 271-437 77-265 (293)
136 2qfc_A PLCR protein; TPR, HTH, 98.4 2.5E-05 8.6E-10 74.3 20.5 165 236-401 77-264 (293)
137 2c2l_A CHIP, carboxy terminus 98.4 6.1E-07 2.1E-11 85.0 9.0 96 93-190 5-100 (281)
138 2lni_A Stress-induced-phosphop 98.4 9.3E-06 3.2E-10 66.4 15.3 114 234-350 16-129 (133)
139 2vyi_A SGTA protein; chaperone 98.4 7E-06 2.4E-10 66.8 14.4 117 93-212 13-129 (131)
140 2lni_A Stress-induced-phosphop 98.4 6E-06 2.1E-10 67.6 13.6 115 91-208 15-129 (133)
141 2vyi_A SGTA protein; chaperone 98.4 1E-05 3.5E-10 65.8 14.7 90 240-331 18-107 (131)
142 2e2e_A Formate-dependent nitri 98.4 2.1E-06 7E-11 74.9 10.9 119 281-402 22-143 (177)
143 3gyz_A Chaperone protein IPGC; 98.4 3.2E-06 1.1E-10 71.2 11.6 103 338-445 35-138 (151)
144 3gw4_A Uncharacterized protein 98.4 3.3E-06 1.1E-10 75.2 12.3 156 281-437 4-175 (203)
145 2vgx_A Chaperone SYCD; alterna 98.4 1.8E-06 6.3E-11 72.7 9.8 98 338-438 20-118 (148)
146 3gw4_A Uncharacterized protein 98.3 5.3E-06 1.8E-10 73.9 13.2 131 270-401 27-174 (203)
147 3dss_A Geranylgeranyl transfer 98.3 0.001 3.6E-08 63.3 28.4 188 104-298 41-267 (331)
148 2vgx_A Chaperone SYCD; alterna 98.3 3.4E-06 1.2E-10 71.0 10.1 60 340-400 56-115 (148)
149 1elw_A TPR1-domain of HOP; HOP 98.3 4E-05 1.4E-09 60.8 16.2 97 93-191 5-101 (118)
150 3upv_A Heat shock protein STI1 98.2 2.6E-05 8.7E-10 63.3 14.0 93 343-437 8-100 (126)
151 1p5q_A FKBP52, FK506-binding p 98.2 2.8E-05 9.5E-10 75.6 16.6 87 270-358 197-283 (336)
152 1p5q_A FKBP52, FK506-binding p 98.2 2E-05 6.8E-10 76.6 15.5 145 269-437 147-293 (336)
153 4gcn_A Protein STI-1; structur 98.2 1.4E-05 4.7E-10 65.2 12.1 106 340-448 9-120 (127)
154 3upv_A Heat shock protein STI1 98.2 3.2E-05 1.1E-09 62.8 14.0 97 93-191 5-101 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.2 6E-05 2.1E-09 59.8 15.5 26 341-366 74-99 (118)
156 2xcb_A PCRH, regulatory protei 98.2 1.4E-05 4.7E-10 66.7 11.5 98 339-438 18-115 (142)
157 2fbn_A 70 kDa peptidylprolyl i 98.2 2.2E-06 7.5E-11 76.3 6.8 61 341-402 90-150 (198)
158 2kck_A TPR repeat; tetratricop 98.2 3.1E-05 1E-09 60.9 12.8 98 92-191 6-106 (112)
159 4gcn_A Protein STI-1; structur 98.1 3.7E-05 1.3E-09 62.5 12.8 104 94-200 10-119 (127)
160 3sz7_A HSC70 cochaperone (SGT) 98.1 5.8E-05 2E-09 64.6 14.6 99 338-438 10-108 (164)
161 2kck_A TPR repeat; tetratricop 98.1 3.6E-05 1.2E-09 60.5 12.4 98 339-438 6-106 (112)
162 2xcb_A PCRH, regulatory protei 98.1 2.8E-05 9.5E-10 64.8 12.1 96 94-191 20-115 (142)
163 2fbn_A 70 kDa peptidylprolyl i 98.1 7.4E-06 2.5E-10 72.8 9.0 139 75-216 18-175 (198)
164 1elr_A TPR2A-domain of HOP; HO 98.1 3.1E-05 1.1E-09 62.9 11.9 109 93-204 5-119 (131)
165 3q49_B STIP1 homology and U bo 98.1 7.6E-05 2.6E-09 61.4 14.4 98 91-190 8-105 (137)
166 3q49_B STIP1 homology and U bo 98.1 7.8E-05 2.7E-09 61.3 13.8 97 234-332 9-105 (137)
167 2dba_A Smooth muscle cell asso 98.1 0.00014 4.8E-09 60.5 15.4 111 90-204 26-140 (148)
168 1elr_A TPR2A-domain of HOP; HO 98.1 3.4E-05 1.1E-09 62.7 11.2 94 343-437 8-107 (131)
169 1hxi_A PEX5, peroxisome target 98.0 6E-05 2E-09 60.7 11.9 95 95-191 20-114 (121)
170 2dba_A Smooth muscle cell asso 98.0 0.00023 7.8E-09 59.2 16.1 95 198-297 29-127 (148)
171 3sz7_A HSC70 cochaperone (SGT) 98.0 7.2E-05 2.5E-09 64.0 13.0 98 92-191 11-108 (164)
172 4b4t_Q 26S proteasome regulato 98.0 7E-05 2.4E-09 75.6 14.7 219 27-296 6-243 (434)
173 1wao_1 Serine/threonine protei 97.9 0.00011 3.8E-09 75.0 14.4 117 244-363 16-134 (477)
174 1hxi_A PEX5, peroxisome target 97.9 0.00011 3.7E-09 59.2 11.3 86 243-330 26-111 (121)
175 4b4t_Q 26S proteasome regulato 97.9 0.00059 2E-08 68.7 19.4 166 272-437 58-244 (434)
176 2xev_A YBGF; tetratricopeptide 97.8 0.00057 1.9E-08 55.2 14.5 92 98-191 8-105 (129)
177 2xev_A YBGF; tetratricopeptide 97.8 0.00049 1.7E-08 55.6 14.1 25 377-401 79-103 (129)
178 3ro3_A PINS homolog, G-protein 97.8 0.00013 4.6E-09 61.5 11.1 131 307-437 12-157 (164)
179 1wao_1 Serine/threonine protei 97.8 0.00016 5.4E-09 73.9 13.4 119 100-221 14-134 (477)
180 3rkv_A Putative peptidylprolyl 97.8 0.00022 7.5E-09 60.7 12.1 63 374-437 63-125 (162)
181 3k9i_A BH0479 protein; putativ 97.8 2.4E-05 8.4E-10 62.6 5.5 86 352-438 3-90 (117)
182 3rkv_A Putative peptidylprolyl 97.8 0.00024 8.3E-09 60.4 12.0 110 304-416 11-138 (162)
183 3ro3_A PINS homolog, G-protein 97.8 0.00019 6.6E-09 60.5 11.4 95 129-223 11-115 (164)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00045 1.5E-08 70.1 15.2 118 236-356 270-402 (457)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00046 1.6E-08 70.1 15.0 119 94-215 270-403 (457)
186 1ihg_A Cyclophilin 40; ppiase 97.7 0.00037 1.3E-08 68.4 13.8 120 237-358 226-360 (370)
187 1dce_A Protein (RAB geranylger 97.7 0.0027 9.3E-08 66.0 20.2 173 106-285 43-242 (567)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.00042 1.4E-08 68.1 12.9 90 161-254 272-361 (370)
189 3k9i_A BH0479 protein; putativ 97.6 0.00011 3.7E-09 58.7 7.2 86 105-191 3-90 (117)
190 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00037 1.3E-08 67.6 10.6 146 94-263 181-328 (338)
191 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00031 1.1E-08 68.1 10.0 146 270-437 180-327 (338)
192 1dce_A Protein (RAB geranylger 97.5 0.0062 2.1E-07 63.3 20.3 171 250-426 45-243 (567)
193 2hr2_A Hypothetical protein; a 97.5 0.0015 5.2E-08 54.4 11.8 62 376-437 59-130 (159)
194 2hr2_A Hypothetical protein; a 97.5 0.0018 6.3E-08 53.9 12.2 93 96-189 15-129 (159)
195 1klx_A Cysteine rich protein B 97.4 0.0062 2.1E-07 49.9 14.8 15 353-367 75-89 (138)
196 1klx_A Cysteine rich protein B 97.4 0.0076 2.6E-07 49.4 15.0 110 249-369 10-127 (138)
197 2l6j_A TPR repeat-containing p 97.3 0.00018 6.2E-09 56.4 4.6 63 93-156 5-67 (111)
198 1na3_A Designed protein CTPR2; 97.3 0.0025 8.5E-08 47.5 10.7 62 94-156 11-72 (91)
199 1zu2_A Mitochondrial import re 97.3 0.00062 2.1E-08 56.6 7.5 98 351-453 14-133 (158)
200 3n71_A Histone lysine methyltr 97.3 0.0011 3.9E-08 67.2 11.0 124 314-437 319-463 (490)
201 2l6j_A TPR repeat-containing p 97.3 0.00037 1.3E-08 54.5 5.8 54 312-366 12-65 (111)
202 1zu2_A Mitochondrial import re 97.2 0.00056 1.9E-08 56.9 6.6 97 318-418 16-133 (158)
203 2kat_A Uncharacterized protein 97.2 0.0024 8E-08 50.4 10.2 77 111-189 4-80 (115)
204 1na3_A Designed protein CTPR2; 97.2 0.0048 1.6E-07 45.8 10.9 60 237-297 12-71 (91)
205 3n71_A Histone lysine methyltr 97.1 0.0021 7.1E-08 65.2 11.1 88 173-260 320-419 (490)
206 2kat_A Uncharacterized protein 97.1 0.0035 1.2E-07 49.4 10.0 22 240-261 25-46 (115)
207 3ly7_A Transcriptional activat 97.0 0.032 1.1E-06 53.4 16.7 75 124-202 274-348 (372)
208 3ma5_A Tetratricopeptide repea 96.7 0.0081 2.8E-07 45.9 9.0 62 92-154 7-68 (100)
209 3ma5_A Tetratricopeptide repea 96.7 0.0086 2.9E-07 45.8 9.0 65 125-190 5-69 (100)
210 3ly7_A Transcriptional activat 96.5 0.036 1.2E-06 53.0 13.3 74 371-448 274-347 (372)
211 1pc2_A Mitochondria fission pr 96.5 0.04 1.4E-06 45.2 11.6 95 355-453 14-113 (152)
212 3mkq_A Coatomer beta'-subunit; 96.1 0.25 8.4E-06 54.0 19.2 152 102-294 609-761 (814)
213 3mkq_A Coatomer beta'-subunit; 96.0 0.11 3.7E-06 56.8 16.0 47 137-189 662-708 (814)
214 3qww_A SET and MYND domain-con 96.0 0.017 6E-07 57.4 8.4 61 340-400 341-408 (433)
215 2kc7_A BFR218_protein; tetratr 95.9 0.024 8.3E-07 42.8 7.4 55 101-156 9-64 (99)
216 3qwp_A SET and MYND domain-con 95.8 0.041 1.4E-06 54.8 10.5 62 375-436 330-398 (429)
217 3qww_A SET and MYND domain-con 95.7 0.031 1.1E-06 55.6 8.9 87 351-437 310-410 (433)
218 3bee_A Putative YFRE protein; 95.5 0.12 4.1E-06 38.6 9.5 66 125-191 4-72 (93)
219 3bee_A Putative YFRE protein; 95.5 0.12 4.2E-06 38.5 9.5 66 90-156 4-72 (93)
220 3qwp_A SET and MYND domain-con 95.4 0.13 4.5E-06 51.1 12.4 88 244-331 297-398 (429)
221 3mkq_B Coatomer subunit alpha; 95.4 1 3.6E-05 37.8 16.2 81 92-187 34-114 (177)
222 2kc7_A BFR218_protein; tetratr 95.3 0.13 4.5E-06 38.6 9.6 58 241-299 7-65 (99)
223 3u64_A Protein TP_0956; tetrat 95.3 1.8 6.1E-05 39.7 18.0 92 213-308 179-281 (301)
224 3mkq_B Coatomer subunit alpha; 95.1 0.85 2.9E-05 38.3 14.4 98 173-293 16-113 (177)
225 1pc2_A Mitochondria fission pr 95.0 0.15 5.2E-06 41.8 9.3 84 321-408 15-103 (152)
226 1nzn_A CGI-135 protein, fissio 94.2 0.58 2E-05 36.8 10.6 96 352-451 14-114 (126)
227 1wy6_A Hypothetical protein ST 94.2 1.6 5.6E-05 34.5 14.1 62 307-369 94-155 (172)
228 3u64_A Protein TP_0956; tetrat 94.2 3.3 0.00011 38.0 20.9 93 250-343 179-281 (301)
229 2v5f_A Prolyl 4-hydroxylase su 93.9 0.43 1.5E-05 36.3 9.5 27 411-437 48-74 (104)
230 4h7y_A Dual specificity protei 93.9 0.45 1.5E-05 38.5 9.4 112 338-451 12-136 (161)
231 2v5f_A Prolyl 4-hydroxylase su 93.7 0.7 2.4E-05 35.1 10.4 61 130-190 8-74 (104)
232 1wy6_A Hypothetical protein ST 93.0 2.8 9.5E-05 33.2 15.4 138 174-335 19-156 (172)
233 4b4t_P 26S proteasome regulato 92.9 5.4 0.00018 39.7 17.9 98 200-297 140-246 (445)
234 1nzn_A CGI-135 protein, fissio 92.0 0.71 2.4E-05 36.3 7.9 86 319-408 16-106 (126)
235 4h7y_A Dual specificity protei 91.9 1.5 5.1E-05 35.5 9.7 114 88-204 9-135 (161)
236 4ady_A RPN2, 26S proteasome re 90.6 22 0.00074 38.7 25.5 265 137-416 384-668 (963)
237 1v54_E Cytochrome C oxidase po 89.3 3.1 0.00011 30.9 8.6 66 389-455 25-90 (109)
238 4gns_B Protein CSD3, chitin bi 87.7 2.2 7.5E-05 45.2 10.0 50 315-365 348-397 (754)
239 4gns_B Protein CSD3, chitin bi 87.4 2.8 9.6E-05 44.4 10.6 124 202-330 253-397 (754)
240 2ff4_A Probable regulatory pro 87.3 2.7 9.2E-05 41.0 9.9 72 130-202 174-250 (388)
241 2ff4_A Probable regulatory pro 86.4 3.1 0.0001 40.6 9.8 130 91-239 111-250 (388)
242 4fhn_B Nucleoporin NUP120; pro 86.1 19 0.00064 40.8 17.3 90 127-218 899-992 (1139)
243 1v54_E Cytochrome C oxidase po 85.9 8.4 0.00029 28.6 9.1 62 284-346 25-86 (109)
244 3o48_A Mitochondria fission 1 85.6 12 0.0004 29.6 12.2 79 371-453 37-120 (134)
245 2y69_E Cytochrome C oxidase su 85.2 9.3 0.00032 30.1 9.6 65 390-455 69-133 (152)
246 2p58_C Putative type III secre 83.3 9.9 0.00034 28.1 8.5 86 106-200 21-106 (116)
247 2uwj_G Type III export protein 80.7 15 0.00051 27.2 8.7 80 38-122 19-98 (115)
248 3o48_A Mitochondria fission 1 80.4 13 0.00046 29.3 9.1 71 336-408 37-110 (134)
249 2uwj_G Type III export protein 80.4 9.4 0.00032 28.2 7.5 86 106-200 20-105 (115)
250 4fhn_B Nucleoporin NUP120; pro 80.3 41 0.0014 38.0 17.0 169 165-357 815-989 (1139)
251 2p58_C Putative type III secre 79.9 16 0.00055 27.0 8.8 80 38-122 20-99 (116)
252 2y69_E Cytochrome C oxidase su 79.0 20 0.00068 28.3 9.4 62 284-346 68-129 (152)
253 4b4t_P 26S proteasome regulato 78.6 54 0.0018 32.4 20.2 94 273-366 141-245 (445)
254 1qsa_A Protein (soluble lytic 76.7 74 0.0025 32.9 36.5 198 212-432 229-436 (618)
255 4ady_A RPN2, 26S proteasome re 75.3 99 0.0034 33.7 32.6 84 34-120 154-258 (963)
256 3ffl_A Anaphase-promoting comp 75.2 19 0.00065 29.7 8.9 57 240-296 26-90 (167)
257 3ffl_A Anaphase-promoting comp 73.1 21 0.0007 29.5 8.7 119 95-226 23-151 (167)
258 1y8m_A FIS1; mitochondria, unk 72.6 35 0.0012 27.3 13.9 79 371-453 36-119 (144)
259 3lvg_A Clathrin heavy chain 1; 71.6 0.002 6.9E-08 62.9 -17.7 232 127-397 54-285 (624)
260 3lvg_A Clathrin heavy chain 1; 68.7 0.005 1.7E-07 60.2 -15.7 223 92-352 54-276 (624)
261 4b4t_R RPN7, 26S proteasome re 65.1 35 0.0012 33.5 10.4 59 202-260 136-194 (429)
262 4b4t_R RPN7, 26S proteasome re 64.6 72 0.0025 31.2 12.5 61 236-296 133-195 (429)
263 3esl_A Checkpoint serine/threo 64.5 18 0.00062 30.9 6.9 60 27-86 78-140 (202)
264 1y8m_A FIS1; mitochondria, unk 63.8 55 0.0019 26.2 12.2 71 336-408 36-109 (144)
265 1zbp_A Hypothetical protein VP 62.3 39 0.0013 30.4 8.9 54 102-156 7-60 (273)
266 3ltm_A Alpha-REP4; protein eng 62.1 74 0.0025 27.1 19.2 48 126-177 63-110 (211)
267 2wpv_A GET4, UPF0363 protein Y 61.6 1E+02 0.0035 28.6 21.1 134 25-185 13-157 (312)
268 3ltm_A Alpha-REP4; protein eng 58.9 83 0.0029 26.7 16.6 128 85-225 57-184 (211)
269 3lpz_A GET4 (YOR164C homolog); 57.9 1.2E+02 0.0042 28.3 22.8 135 24-185 11-159 (336)
270 1zbp_A Hypothetical protein VP 54.9 1.2E+02 0.0041 27.3 12.0 52 208-262 8-59 (273)
271 3esl_A Checkpoint serine/threo 54.6 1E+02 0.0035 26.3 11.3 55 106-160 93-148 (202)
272 1qsa_A Protein (soluble lytic 53.9 2E+02 0.007 29.6 35.5 367 34-438 15-410 (618)
273 4a1g_A Mitotic checkpoint seri 53.1 20 0.00069 29.1 5.0 49 80-128 84-137 (152)
274 3ltj_A Alpharep-4; protein eng 48.0 1.2E+02 0.0042 25.3 19.8 81 89-177 25-105 (201)
275 3lpz_A GET4 (YOR164C homolog); 47.0 1.8E+02 0.0063 27.1 21.7 66 130-210 38-107 (336)
276 2wvi_A Mitotic checkpoint seri 46.8 37 0.0013 28.0 5.7 40 89-128 93-132 (164)
277 2d2s_A Exocyst complex compone 42.9 1.6E+02 0.0054 25.9 9.7 27 269-295 91-117 (235)
278 4aez_C MAD3, mitotic spindle c 42.3 29 0.00099 30.2 4.6 33 93-125 151-183 (223)
279 1k1a_A B-cell lymphoma 3-encod 37.5 57 0.0019 28.3 6.2 21 137-157 16-36 (241)
280 2r9g_A AAA ATPase, central reg 35.6 2.1E+02 0.007 24.4 9.2 17 283-299 28-44 (204)
281 2wpv_A GET4, UPF0363 protein Y 35.6 2.7E+02 0.0092 25.7 22.9 114 130-258 36-158 (312)
282 2d2s_A Exocyst complex compone 35.3 1.9E+02 0.0067 25.3 9.1 26 197-222 91-116 (235)
283 3bge_A Predicted ATPase; struc 33.7 2.1E+02 0.0072 24.3 8.3 32 282-313 20-51 (201)
284 3eiq_C Programmed cell death p 33.6 3.1E+02 0.011 25.9 12.0 76 377-453 220-297 (358)
285 4a1g_A Mitotic checkpoint seri 33.2 1.9E+02 0.0066 23.3 10.4 51 110-160 83-134 (152)
286 1wdy_A 2-5A-dependent ribonucl 32.4 74 0.0025 28.3 6.3 23 386-408 191-213 (285)
287 1n11_A Ankyrin; clathrin, BAND 31.0 60 0.0021 31.6 5.7 16 171-186 119-134 (437)
288 2rg8_A Programmed cell death p 29.9 2.3E+02 0.0078 23.2 8.2 25 377-401 13-37 (165)
289 2p1h_A APAF-1, apoptotic prote 29.7 1.6E+02 0.0054 21.2 6.9 63 44-111 24-86 (94)
290 1wdy_A 2-5A-dependent ribonucl 29.1 41 0.0014 30.2 3.8 24 350-373 190-213 (285)
291 3ctd_A Putative ATPase, AAA fa 28.0 2.9E+02 0.0098 23.7 8.6 33 282-314 48-80 (213)
292 1bpo_A Protein (clathrin); cla 27.6 4.5E+02 0.015 25.8 11.8 112 106-222 343-454 (494)
293 4aez_C MAD3, mitotic spindle c 27.3 2.4E+02 0.008 24.5 7.9 55 391-445 131-186 (223)
294 1mzb_A Ferric uptake regulatio 26.8 2E+02 0.0069 22.5 7.1 58 260-318 9-67 (136)
295 3eiq_C Programmed cell death p 26.8 4.1E+02 0.014 25.1 15.5 26 199-224 56-81 (358)
296 2fe3_A Peroxide operon regulat 26.8 2E+02 0.007 22.7 7.2 44 275-318 27-70 (145)
297 2wvi_A Mitotic checkpoint seri 26.0 2.7E+02 0.0093 22.8 11.0 51 111-161 79-130 (164)
298 1k1a_A B-cell lymphoma 3-encod 25.8 1.5E+02 0.0051 25.5 6.9 11 433-443 200-210 (241)
299 1oai_A Nuclear RNA export fact 25.2 72 0.0025 20.9 3.3 45 523-572 13-57 (59)
300 2zu6_B Programmed cell death p 24.6 1E+02 0.0034 28.5 5.5 233 96-332 7-269 (307)
301 3ygs_P Procaspase 9; apoptosis 24.0 1.3E+02 0.0043 22.1 4.9 64 46-114 25-90 (97)
302 2xig_A Ferric uptake regulatio 23.7 2.1E+02 0.0071 22.9 6.7 67 251-318 9-75 (150)
303 2w57_A Ferric uptake regulatio 23.7 2.2E+02 0.0076 22.7 6.9 58 260-318 8-66 (150)
304 3eyy_A Putative iron uptake re 23.3 1.8E+02 0.0063 23.1 6.3 57 260-318 10-66 (145)
305 3t8k_A Uncharacterized protein 23.2 2.5E+02 0.0085 23.2 7.5 29 133-161 41-69 (186)
306 3hra_A Ankyrin repeat family p 23.1 73 0.0025 26.6 4.1 15 394-408 158-172 (201)
307 4gq2_M Nucleoporin NUP120; bet 23.0 5.3E+02 0.018 28.2 11.8 49 128-176 898-950 (950)
308 3jxi_A Vanilloid receptor-rela 22.6 63 0.0022 28.6 3.7 53 243-295 11-72 (260)
309 3t8k_A Uncharacterized protein 21.7 2.8E+02 0.0094 22.9 7.5 15 394-408 133-148 (186)
310 3ygs_P Procaspase 9; apoptosis 21.2 2.4E+02 0.0083 20.5 6.1 14 320-333 53-66 (97)
311 3txn_A 26S proteasome regulato 21.1 5.5E+02 0.019 24.5 25.4 170 274-448 104-293 (394)
312 3txn_A 26S proteasome regulato 20.2 5.7E+02 0.02 24.4 24.3 93 309-401 104-208 (394)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-35 Score=316.73 Aligned_cols=416 Identities=8% Similarity=-0.039 Sum_probs=355.7
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC--CCCChhhHHHHHH
Q 007384 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (605)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~ 100 (605)
++...|+.++ +.|++++|+.+|+++.... |.. ..+..++..+...|++++|+.+|+++ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 3455555544 7999999999999999765 444 44566888888999999999999998 4788999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 007384 101 VCASSKDSEGAFQVLRLVQEA---------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (605)
.|.+.|++++|..+|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999853211 223458899999999999999999999999999874 2234443
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007384 166 GAL--------------------------------------IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (605)
Q Consensus 166 ~~l--------------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (605)
..+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 333 55667889999999999999876 58999999999999
Q ss_pred hccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHH
Q 007384 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (605)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (605)
.+.|++++|.++|+++.... +.+..++..++.+|.+.|++++|..+|+.+.+.. +.+..+|+.++..|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3466788999999999999999999999998765 6778999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 288 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
|.++|+++.+.... +..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886543 68899999999999999999999999999875 56789999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007384 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (605)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 441 (605)
.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457899999999999999999999999999875 66787 7899999999999999999999999998854 3
Q ss_pred CCHHHHHHHHHHHHh
Q 007384 442 PNLVMFKCIIGMCSR 456 (605)
Q Consensus 442 p~~~~~~~li~~~~~ 456 (605)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 367788888877643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-34 Score=305.26 Aligned_cols=398 Identities=10% Similarity=0.016 Sum_probs=349.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-------------------C
Q 007384 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------T 91 (605)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~ 91 (605)
....+.+.|++++|+++|+++... +.+...+..++..+.+.|++++|+++|+++.+. +
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchh
Confidence 344556899999999999998654 455667778888899999999999999965433 4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------------------------------------- 133 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------------------------------------- 133 (605)
..+|+.++.+|.+.|++++|..+|+.+.+.+ +.+...+..+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 8899999999999999999999999999875 3344444433
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007384 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (605)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (605)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.++.+.|+.
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 55666789999999999999866 5899999999999999999999999999999775 45788999999999999999
Q ss_pred HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007384 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (605)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 293 (605)
++|.++++++... .+.+..++..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 356 ~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 356 NKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999863 35678899999999999999999999999998875 5678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 007384 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K 369 (605)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 369 (605)
++.+.+.. +..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +
T Consensus 432 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 432 TAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 99987653 78899999999999999999999999999875 557899999999999999999999999999875 5
Q ss_pred CCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007384 370 LKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (605)
Q Consensus 370 ~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (605)
..|+ ..+|..++.+|.+.|++++|++.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+ +.|+.
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~ 583 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNE 583 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCC
Confidence 5777 7899999999999999999999999998864 44789999999999999999999999999998 45554
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.4e-30 Score=265.79 Aligned_cols=205 Identities=16% Similarity=0.243 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 007384 252 RAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VE 321 (605)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~ 321 (605)
.+..+.+.+.+++....+. .++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444555555555544433 4667777777777777777777777777777777777777777766543 56
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
+|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (605)
Q Consensus 402 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (605)
+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.+++.+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888877888888888887777653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3e-27 Score=238.51 Aligned_cols=377 Identities=12% Similarity=0.046 Sum_probs=277.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChH
Q 007384 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~ 109 (605)
..+.+.|++++|.+.++++.+.. |.+...+..+...+...|++++|..+++.. .+.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45668899999999999888876 667777777777777778888888877654 3456677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
+|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887754 4456678888888888888888888888877763 3345566777777777888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007384 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (605)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (605)
+.. +.+..+|..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...|++..+.. +.+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 653 3456777788888888888888888888877632 3345667777777888888888888888777765 4556
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (605)
.++..+...|.+.|++++|.+.|+++.+.++. +..++..+...+.+.|++++|...++++.+.. +.+..+++.+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 77777888888888888888888887776543 56677777777777888888888887777664 55677777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 007384 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKD 423 (605)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 423 (605)
.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|+..|+++.+. .| +...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 78888888888887777643 344667777777777788888888877777763 45 3455555555554443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.2e-29 Score=260.58 Aligned_cols=187 Identities=18% Similarity=0.281 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 007384 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEVF 306 (605)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~~ 306 (605)
.++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4555666666666666666666666666666666666666666665443 6788889999998899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007384 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (605)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (605)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999998888899999999999999999999999999999998999999999999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007384 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (605)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 422 (605)
.|+.++|.++|++|.+.|..|+..||+.++..+...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999888899999999888887653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.6e-26 Score=229.17 Aligned_cols=363 Identities=13% Similarity=0.079 Sum_probs=318.1
Q ss_pred HHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007384 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (605)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (605)
..+.+.|++++|.+.|..+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34556788999999998753 4456677777888999999999999999998865 7789999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998874 4456789999999999999999999999998864 33456777888899999999999999999986
Q ss_pred CcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (605)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 305 (605)
. .+.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++.....+. +..
T Consensus 164 ~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 4 24457889999999999999999999999999986 667889999999999999999999999999886543 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007384 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (605)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (605)
++..+...+...|++++|...++++.+.+ +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 4567889999999999999999999999998764 567899999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007384 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (605)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (605)
+.|++++|+..|+++.+. .+.+..++..+..++.+.|++++|...++++.+ +.|+.
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 999999999999999875 234578899999999999999999999999997 45653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.3e-22 Score=203.64 Aligned_cols=333 Identities=11% Similarity=0.018 Sum_probs=235.8
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007384 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (605)
.+...|..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345567777777777778888888777777653 5567777777777777788888888877777664 34567777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHhccCCHHHHHHHHHHHhhCcCCCCCCH
Q 007384 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (605)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (605)
..|.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|...|+++... .+.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCh
Confidence 77777888888888887777653 2223 444444 33377778888888888887653 23466
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL---- 310 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---- 310 (605)
.++..+..+|.+.|++++|...|+++.+.+ +.+..+|..+...|...|++++|...|+++...... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 777778888888888888888888877764 556778888888888888888888888887765432 34444433
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007384 311 --------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (605)
Q Consensus 311 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (605)
...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...++++.+.. +.+...|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 677788888888888888887753 112 3467778888888888888888888877643 34577888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHH------------HHHHhcC-----CHHHHHHHHHH
Q 007384 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL------------VACERKD-----DVEVGLMLLSQ 434 (605)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll------------~~~~~~g-----~~~~a~~~~~~ 434 (605)
.+..+|...|++++|...|+++.+ +.|+ ...+..+. ..|...| +.+++++.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 888888888888888888888876 3554 44444444 2244444 56677777776
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.2e-21 Score=201.47 Aligned_cols=320 Identities=13% Similarity=0.052 Sum_probs=252.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (605)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (605)
+...+..+.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444432 5567888889999999999999999999988764 45788899999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCH----HHHHHH------------HHHHHhcCChHHHH
Q 007384 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGAL------------MKACANAGQVDRAR 254 (605)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~l------------l~~~~~~g~~~~A~ 254 (605)
.+ +.+..++..+...|.+.|++++|.+.|+++... .|+. ..+..+ ...+.+.|++++|.
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 75 456788889999999999999999999998763 4443 455544 44488899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
..|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +..++..+...|...|++++|...|+++.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998875 667888999999999999999999999998876433 67888999999999999999999999988764
Q ss_pred CCCChhHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHH
Q 007384 335 ISVGIISYSSL------------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVL 397 (605)
Q Consensus 335 ~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~ 397 (605)
+.+...+..+ ...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|+..+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3345555544 78889999999999999998875 344 447888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 398 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
+++.+.. +.+..+|..+..+|...|++++|...++++.+ +.|+..
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~ 363 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQ 363 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchH
Confidence 9987642 33678899999999999999999999999987 455533
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.7e-22 Score=207.04 Aligned_cols=405 Identities=10% Similarity=0.013 Sum_probs=316.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhC
Q 007384 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (605)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 105 (605)
...-+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+++. +.+...|..+..++.+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 344566779999999999999999987 5 46677778888888999999999998753 55678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----------------------------
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----------------------------- 156 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------------- 156 (605)
|++++|...|+.+.+.+ +++......++..+........+.+.+..+...
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999876 445454444554444433323222222111100
Q ss_pred ------CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHH
Q 007384 157 ------GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALIT 205 (605)
Q Consensus 157 ------g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~ 205 (605)
.. +.+...+..+...+.. .|++++|...|+++.+ ..- +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 00 1114444445454554 8999999999999987 311 223567788889
Q ss_pred HHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH
Q 007384 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (605)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (605)
.+...|++++|...++++... .|+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 999999999999999998864 3347788889999999999999999999998876 55678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (605)
Q Consensus 286 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (605)
++|...|++..+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887654 66788889999999999999999999998864 456788899999999999999999999988
Q ss_pred HhCCC-CCC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 366 KSIKL-KPT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 366 ~~~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.+... .++ ..+|..+...+.. .|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 76321 111 3488899999999 999999999999988752 33677888999999999999999999999998
Q ss_pred CCCCCCHHHH
Q 007384 438 DGVIPNLVMF 447 (605)
Q Consensus 438 ~g~~p~~~~~ 447 (605)
+.|+....
T Consensus 478 --~~~~~~~~ 485 (514)
T 2gw1_A 478 --LARTMEEK 485 (514)
T ss_dssp --HCSSHHHH
T ss_pred --hccccHHH
Confidence 45665433
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.5e-21 Score=202.74 Aligned_cols=376 Identities=6% Similarity=-0.042 Sum_probs=292.0
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHH
Q 007384 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV 101 (605)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~ 101 (605)
..........+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|...|+++. +++......++..
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 3334444456668999999999999999987 7788888888999999999999999998753 3444444444444
Q ss_pred HHhCCChHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHH
Q 007384 102 CASSKDSEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTC 137 (605)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~-----------------------------------g~---------~~~~~~~~~li~~~ 137 (605)
+........+.+.+..+... .. +.+...+......+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 43322222222222111100 00 11244444455545
Q ss_pred Hh---cCChhHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007384 138 AK---SGKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (605)
Q Consensus 138 ~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (605)
.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.+.. |+..++.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence 44 8999999999999987 311 2245678889999999999999999999998874 3488889
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007384 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (605)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (605)
.+...+...|++++|...++++... .+.+..++..+...|...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999998864 23456788899999999999999999999999876 5567899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhHHHHHHHHHHh---cC
Q 007384 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AK 353 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g 353 (605)
.|++++|...++++.+.... +..++..+...+...|++++|...++.+.+.... ++ ...+..+...|.+ .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999876543 5678889999999999999999999998775311 11 3488999999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007384 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (605)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (605)
++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+. .|+....
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 9999999999998764 456788999999999999999999999999884 5765443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.1e-20 Score=199.17 Aligned_cols=392 Identities=12% Similarity=0.045 Sum_probs=295.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCC
Q 007384 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (605)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 107 (605)
.-+.+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+...+..+...+...|+
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 3455668999999999999999987 7788888888999999999999999998753 5577889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCHH------------------
Q 007384 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVH------------------ 163 (605)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~------------------ 163 (605)
+++|...|+. ... .|+. ....+..+...+....|...++.+... ...|+..
T Consensus 109 ~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999963 322 2322 222344455556667788888877542 1112222
Q ss_pred ------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHH
Q 007384 164 ------------TYGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRA 216 (605)
Q Consensus 164 ------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a 216 (605)
....+...+.. .|++++|..+|+++.+.. +.+. .++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 12222222211 247889999999988763 2232 3466666778888999999
Q ss_pred HHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007384 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (605)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (605)
...+++.... .|+..++..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|.+.|++..
T Consensus 263 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 263 QVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999998864 4567788888889999999999999999998876 5678889999999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CC
Q 007384 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LK 371 (605)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~ 371 (605)
+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 76543 56778888889999999999999999988875 5567788889999999999999999999886532 11
Q ss_pred CCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 372 PTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 372 ~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
.....+..+...+... |++++|+..|++..+.. +.+..++..+...+...|++++|.+.|+++.+.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223344555667777 99999999999988752 345778888999999999999999999999884
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.3e-18 Score=170.85 Aligned_cols=318 Identities=10% Similarity=0.036 Sum_probs=189.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
|+..+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556677777888888888888888887764 5567788888888888888888888888887764 346677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVK---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (605)
.+...|++++|...|+++.+.. + .+...+..+..... ...+..+...+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHc
Confidence 8888888888888888887663 1 13333333311000 00111223344444
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (605)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (605)
|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.... +..++..+...+...|++++|...+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444433 333444444444444555555555555444443322 3444444444444555555555555
Q ss_pred HHHHHCCCCCChhHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChh
Q 007384 328 QEAKNQGISVGIISY------------SSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLP 391 (605)
Q Consensus 328 ~~~~~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~ 391 (605)
+...+.. +.+...+ ..+...+.+.|++++|...++++.+.. +.+. ..+..+...+.+.|+++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHH
Confidence 4444432 1122221 123555777777777777777776643 1222 22444666777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007384 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (605)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (605)
+|+..+++..+.. +.+..++..+...+...|++++|...++++.+ +.|+
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~ 338 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNEN 338 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 7777777776641 23566777777777777777777777777776 3454
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=4.1e-18 Score=169.05 Aligned_cols=320 Identities=12% Similarity=0.049 Sum_probs=233.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007384 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (605)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (605)
|+..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777778888888888888877664 4456777777788888888888888888777653 335677777777
Q ss_pred HHhccCCHHHHHHHHHHHhhCcCCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007384 206 ACGQSGAVDRAFDVLAEMNAEVHPVDP---D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (605)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (605)
.+...|++++|...|++.... .| + ...+..+...+. ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 777888888888888777643 34 2 222222211110 1224445678899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007384 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (605)
.|++++|.+.++++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887554 77889999999999999999999999999875 66788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHH------------HHHHHHcCCChhHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCC
Q 007384 362 YEHMKSIKLKPTVSTMNA------------LITALCDGDQLPKTMEVLSDMKSLGLCPN-T----ITYSILLVACERKDD 424 (605)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~g~ 424 (605)
|++..+.. +.+...+.. +...+.+.|++++|+..++++.+. .|+ . ..+..+...+...|+
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccC
Confidence 99998754 334444432 366799999999999999998875 344 3 235557788999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh--hHHHHHhhhhhhhhccCCCccchhhhHH
Q 007384 425 VEVGLMLLSQAKEDGVIP-NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS 484 (605)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 484 (605)
+++|...++++.+. .| +...+..+...+.+ ++++|....+.....+ |.+...|..
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~ 345 (359)
T 3ieg_A 288 PVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN---ENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChHHHHH
Confidence 99999999999985 34 55566666666543 5666766555443333 444444443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.6e-18 Score=179.72 Aligned_cols=377 Identities=11% Similarity=0.033 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (605)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 137 (605)
...+...+..+...|++++|++.|+++. +.+...|..+..++.+.|++++|...++.+.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3445566677777888899999998753 5677888888899999999999999999988875 66788888999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHH------------
Q 007384 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVV------------ 199 (605)
Q Consensus 138 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~------------ 199 (605)
...|++++|.+.|+. ... .|+ ..+..+..+...+....|...++.+... ...|+...
T Consensus 104 ~~~g~~~~A~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSV-LSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHH-Hhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999963 322 222 2233344556666677888888887543 11222222
Q ss_pred ------------------HHHHHHHHhcc--------CCHHHHHHHHHHHhhCcCCCCCC--------HHHHHHHHHHHH
Q 007384 200 ------------------FNALITACGQS--------GAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACA 245 (605)
Q Consensus 200 ------------------~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~ 245 (605)
...+...+... |++++|..+++++... .|+ ..++..+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHH
Confidence 22222222222 4788999999998764 333 234666777888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (605)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (605)
..|++++|...|+.+.+.. |+..++..+...+...|++++|.+.|+++.+.... +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998874 44888999999999999999999999999887544 67889999999999999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-
Q 007384 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG- 404 (605)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 404 (605)
.++++.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...|..+...+...|++++|+..|+++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998875 4467888999999999999999999999998764 4457788999999999999999999999986532
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007384 405 ----LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIP-NLVMFKCIIGMC 454 (605)
Q Consensus 405 ----~~p~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~ 454 (605)
.......+......+... |++++|...++++.+. .| +...+..+..++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLK 472 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 111223344555667777 9999999999999884 34 344555555544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.3e-17 Score=163.52 Aligned_cols=286 Identities=15% Similarity=0.082 Sum_probs=175.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007384 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (605)
.+...+..+...+...|++++|..+|+.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..+|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 345556666667777777777777777777654 4455556666677777777777777777777653 33566677777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcC
Q 007384 170 DGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (605)
Q Consensus 170 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (605)
..+...| ++++|...|++..... +.+...|..+...+...|++++|.+.+++..... +.+...+..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 7777777 7777777777776653 3345666677777777777777777777766531 223445555666677777
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCH
Q 007384 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGKV 320 (605)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~ 320 (605)
++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 7777777777766654 4456666666666666777777766666655421 011234555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007384 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (605)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (605)
++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555555555543 2344555555555555555555555555555432 22344444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=8e-18 Score=164.97 Aligned_cols=292 Identities=12% Similarity=0.021 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (605)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (605)
+.+...+..+...+...|++++|.++|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4455666777778888888888888888887764 3455667777778888888888888888887753 4456777778
Q ss_pred HHHHhccC-CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 007384 204 ITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (605)
Q Consensus 204 i~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (605)
...+...| ++++|.+.|++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888877532 3345667778888888888888888888887765 44456677778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCChhHHHHHHHHHHhcCC
Q 007384 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKN 354 (605)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 354 (605)
|++++|.+.+++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 8888888888888776543 56777777778888888888888887776531 12335677777777777888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCCH
Q 007384 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC-ERKDDV 425 (605)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~-~~~g~~ 425 (605)
+++|...|++..+.. +.+...|..+...|.+.|++++|...|++..+. .| +...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 888888877776653 335667777777777777888887777776653 44 455566666555 344443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=4.2e-16 Score=163.53 Aligned_cols=408 Identities=11% Similarity=0.070 Sum_probs=274.3
Q ss_pred ccCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHHH
Q 007384 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (605)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (605)
+|.++..-..... +.+.|++++|+.+|+++.+.. |.+..++..++....+.|++++|..+|++.. .|+...|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4566655555454 357899999999999999876 7788888888888888899999999999864 4677777777
Q ss_pred HHH-HHhCCChHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCH
Q 007384 99 MSV-CASSKDSEGAFQ----VLRLVQEA-GLK-ADCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNV 162 (605)
Q Consensus 99 l~~-~~~~~~~~~A~~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~ 162 (605)
+.. ....|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.++.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 653 345677777665 66666542 443 356788887777655 68899999999998873211112
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHhcc--
Q 007384 163 HTYGALIDGC-------------AKAGQVAKAFGAYGIM------RSKN---VKPD--------RVVFNALITACGQS-- 210 (605)
Q Consensus 163 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~-- 210 (605)
..|....... .+.+++..|..++..+ .+.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3444332211 1234566677666652 2221 2343 23555544332221
Q ss_pred --CCH----HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCCCHH
Q 007384 211 --GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPE 270 (605)
Q Consensus 211 --g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~ 270 (605)
++. ..+..+|++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+..
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred cCCcchhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 3666777777653 23456677777776665 68876 7888888887632355678
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH-
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA- 348 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 348 (605)
.|..++..+.+.|++++|..+|+++.+.... +. ..|...+..+.+.|++++|..+|++..+.. +.+...|......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 8888888888888888888888888875332 32 467777777778888888888888887753 2233333332222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCH
Q 007384 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDV 425 (605)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~ 425 (605)
+...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 335788888888888777643 3457788888888888888888888888887752 2232 44677777777778888
Q ss_pred HHHHHHHHHHHH
Q 007384 426 EVGLMLLSQAKE 437 (605)
Q Consensus 426 ~~a~~~~~~~~~ 437 (605)
+.+..++.++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888776
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=4e-15 Score=154.42 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=299.2
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHhhCC-CCChhhHHHHHHHHHh----CCChHHHHHH
Q 007384 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (605)
Q Consensus 44 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~----~~~~~~A~~~ 114 (605)
+...+....+.| +......+...+.. .++.++|+..|++.. ..+...+..+...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345555555544 33334445555554 578899999998754 3567788888888888 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007384 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (605)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 186 (605)
|+...+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 67788888888888 789999999999998865 67788888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 007384 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (605)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~ 258 (605)
+..+.| +...+..+...|.. .++.++|.+.|...... .+...+..+...|.. .+++++|...|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67888888888887 89999999999998763 356677788888886 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 007384 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (605)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 329 (605)
+..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... ++.++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998865 45777778888877 899999999999998775 556777777888777 899999999999
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHh
Q 007384 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (605)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 402 (605)
..+.+ +...+..+...|.+.| +.++|.+.|++..+. .+...+..|...|.. .+++++|+..|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99876 4567778888888766 789999999999885 467888899999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 007384 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (605)
Q Consensus 403 ~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~ 441 (605)
.| +...+..+...+.+ .+++++|...|+++.+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 64 56778888888887 89999999999999986543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=5.1e-15 Score=153.61 Aligned_cols=351 Identities=13% Similarity=0.045 Sum_probs=292.1
Q ss_pred chhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHhhCC-CCChhh
Q 007384 24 DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLST 94 (605)
Q Consensus 24 ~~~~~~~~~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~ 94 (605)
+.......-..+.. .+++++|+..|++..+.| +......+...+.. .++.++|++.|++.. ..+...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444444444555 799999999999999876 23445556666666 678999999998864 446777
Q ss_pred HHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 007384 95 FNMLMSVCAS----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (605)
Q Consensus 95 ~~~ll~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 166 (605)
+..+...|.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+.| +...+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888888 789999999999998865 67788888888887 789999999999998864 788899
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 167 ALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 167 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
.|...|.. .++.++|...|++..+.| +..++..+...|.. .++.++|..+|+..... .+...+.
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~ 259 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQF 259 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHH
Confidence 99999988 899999999999998876 56778888888876 78999999999998753 3556777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007384 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSA 309 (605)
Q Consensus 239 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ 309 (605)
.+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|...|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78888888 899999999999998765 457888888888887 89999999999999875 4567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007384 310 LIDFAGHAG---KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (605)
Q Consensus 310 li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 382 (605)
+...|...| +.++|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777766 7899999999999875 57788899999998 899999999999999854 6778888999
Q ss_pred HHHc----CCChhHHHHHHHHHHhCC
Q 007384 383 ALCD----GDQLPKTMEVLSDMKSLG 404 (605)
Q Consensus 383 ~~~~----~g~~~~A~~~~~~m~~~g 404 (605)
.|.+ .+++++|...|++..+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9988 899999999999998865
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.2e-17 Score=166.55 Aligned_cols=322 Identities=11% Similarity=-0.010 Sum_probs=193.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHH-HHhhCC---C--C--ChhhHHHHHHHHHhCCChH
Q 007384 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~---~--~--~~~~~~~ll~~~~~~~~~~ 109 (605)
.+.++.+...++.+.+.+ +. .+...|++++|+. .|++.. + | +...+..+...+.+.|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHcCC--ch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 344555555666665544 11 1122367888888 777542 1 1 3456888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
+|...|+.+.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.
T Consensus 82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999875 6678899999999999999999999999998875 4578889999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 007384 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-- 267 (605)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-- 267 (605)
... +.+...+..+... .. . ..+. ..+..+...+ ..|++++|...|+++.+.. +.
T Consensus 160 ~~~-~~~~~~~~~~~~~-------~~-------~------~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~ 215 (368)
T 1fch_A 160 RYT-PAYAHLVTPAEEG-------AG-------G------AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSI 215 (368)
T ss_dssp HTS-TTTGGGCC------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSC
T ss_pred HhC-cCcHHHHHHHHHH-------hh-------h------hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcc
Confidence 764 2222222111000 00 0 0000 0111122222 5666667777766666654 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007384 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (605)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (605)
+..++..+...|.+.|++++|...|+++.+.... +..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4566666667777777777777777766654332 45666666667777777777777777766653 345666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLK----------PTVSTMNALITALCDGDQLPKTMEVLSD 399 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (605)
+|.+.|++++|...|+++.+.... ....+|..+..+|...|++++|..++++
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 777777777777777766543210 1156777777777777777777776654
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.3e-17 Score=166.47 Aligned_cols=302 Identities=10% Similarity=-0.007 Sum_probs=203.7
Q ss_pred CCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007384 105 SKDSEGAFQ-VLRLVQEAGL-KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (605)
Q Consensus 105 ~~~~~~A~~-~~~~m~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (605)
.|++++|.. .++...+... .| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5554432210 01 23445566666667777777777777766653 3455666666666667777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 007384 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKM 259 (605)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (605)
|...|+++.+.. +.+..++..+...+...|++++|...++++.... |+. ..+..+.. ...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~-------~~~------- 177 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT----PAYAHLVTPAEE-------GAG------- 177 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----TTTGGGCC---------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCcHHHHHHHHH-------Hhh-------
Confidence 777776666553 3456666666666666666666666666665431 211 11100000 000
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007384 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (605)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (605)
.. .+ ...+..+. .+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.+
T Consensus 178 ~~----~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 GA----GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hh----cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 00 01112233 3348899999999999998865432 57889999999999999999999999998875 556
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-C---------
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-N--------- 408 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~--------- 408 (605)
..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+. .| +
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 327 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGA 327 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccc
Confidence 8899999999999999999999999998764 456889999999999999999999999998763 22 1
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 409 --TITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 409 --~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
..+|..+..++...|++++|..++.+..
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6889999999999999999999887554
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.5e-14 Score=151.65 Aligned_cols=396 Identities=10% Similarity=0.068 Sum_probs=282.9
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 007384 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (605)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~ 124 (605)
|++.++.+ |.+...+..++.. .+.|++++|..+|+++. +.+...|...+..+.+.|++++|..+|+++++. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666666 6677666666665 55688999999999864 456778999999999999999999999999876 4
Q ss_pred CCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 007384 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVNA-GIE-PNVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (605)
Q Consensus 125 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 188 (605)
|+...|...+... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 45677777665 77776543 443 356788888887655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------hccCCHHHHHHHHHHH------hhCc-CCCCCC--------HHHHHHH
Q 007384 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPD--------HITIGAL 240 (605)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~------~~~~-~~~~~~--------~~~~~~l 240 (605)
.+....+....|....... .+.+++..|..++... .... ..++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8742111133444322211 1345677777776652 1110 012443 2455555
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHC
Q 007384 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (605)
Q Consensus 241 l~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~ 298 (605)
+...... ++. .++..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433222 232 37788999988874 6678999999988876 79987 899999998862
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007384 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (605)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (605)
-.+-+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 122267889999999999999999999999999864 2233 589999999999999999999999998753 2233333
Q ss_pred HHHHHH-HHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHH
Q 007384 378 NALITA-LCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIG 452 (605)
Q Consensus 378 ~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~--~~~~~~li~ 452 (605)
...... +...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|+.+|+++...+ ..|+ ...|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 332222 34689999999999998874 35 57889999999999999999999999999863 2332 335555554
Q ss_pred H
Q 007384 453 M 453 (605)
Q Consensus 453 ~ 453 (605)
.
T Consensus 472 ~ 472 (530)
T 2ooe_A 472 F 472 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.4e-17 Score=166.03 Aligned_cols=264 Identities=14% Similarity=0.021 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHH
Q 007384 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (605)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (605)
..+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++.... +.+..++..+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~ 141 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMALAV 141 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence 335555555666666666666666655543 3345556666666666666666666666555421 233555555666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 007384 243 ACANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALID 312 (605)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~ 312 (605)
+|...|++++|...|+++.+.... .....+..+...+...|++++|.+.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 666666666666666665543200 01223344566777777777777777777765432 15667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (605)
.+...|++++|...++++.+.. +.+..+++.+..+|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777664 4456777777777777888888888777777653 3346777777777777788888
Q ss_pred HHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 393 TMEVLSDMKSLGLCP-------------NTITYSILLVACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 393 A~~~~~~m~~~g~~p-------------~~~t~~~ll~~~~~~g~~~~a~~~~~~ 434 (605)
|...|+++.+. .| +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88777776542 12 245677777777777777776665543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=9.7e-17 Score=159.90 Aligned_cols=267 Identities=11% Similarity=-0.061 Sum_probs=180.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007384 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (605)
.+...|..+...+.+.|++++|...|+.+.+.. +.+..+|..+...|...|++++|++.|+++.+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345668888889999999999999999998875 6678899999999999999999999999998874 45688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
..|...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.... +-..+..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 99999999999999999987652 22 1222334566677777777777777776532 1112456666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+.... +..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 67777777777777777777766654 445666777777777777777777777766655332 4556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCC-----------CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 319 KVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELYE 363 (605)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (605)
++++|...|+++.+.... .+...|..+..++...|+.+.+..+..
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666665543200 023445555555555555555554443
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=6.1e-16 Score=148.21 Aligned_cols=257 Identities=12% Similarity=0.144 Sum_probs=178.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 007384 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (605)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 108 (605)
.........|++..|++.++...... |.+ ......+++.+...|+++.|+..++...+|+..++..+...+...++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcH
Confidence 34556677888888888887765543 443 234456667777778888888877766566666777777778888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 109 EGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (605)
++|.+.++.+...+..| +...+..+...+...|++++|++.+++ +.+..++..++..|.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877665434 556666677778888888888887776 35677777788888888888888888888
Q ss_pred HHhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007384 188 MRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (605)
Q Consensus 188 m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (605)
+.+.. |+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|+++.+.+
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77663 442211 12233344457777788777777764 24566677777777777777777777777777765
Q ss_pred CCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCCC
Q 007384 265 IKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKGV 300 (605)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~ 300 (605)
+.+..++..++..+...|+.++ +.++++++.+..+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5567777777777777777765 4567777766543
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=3.2e-16 Score=153.29 Aligned_cols=279 Identities=9% Similarity=-0.028 Sum_probs=165.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
+...+..+...+...|++++|..+|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677778888899999999999888765 5578888888888999999999999999888764 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHH--HHHhcC
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK--ACANAG 248 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g 248 (605)
.|...|++++|.+.|+++.... +.+...+..+...+ |+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------------HHHHHHHHHHHhHHHHHcc
Confidence 8888999999999988887763 22222222220000 00000011101 134444
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (605)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (605)
++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554443 334455555555555555555555555555544322 34455555555555555555555555
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChhHHHHHH
Q 007384 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPKTMEVL 397 (605)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~ 397 (605)
++.+.. +.+...+..+...|.+.|++++|...|+++.+..... +..+|..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555443 3345555556666666666666666666555432110 2455666666666666666666665
Q ss_pred HH
Q 007384 398 SD 399 (605)
Q Consensus 398 ~~ 399 (605)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 44
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.5e-16 Score=155.75 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=122.4
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 007384 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (605)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 107 (605)
....+.|+ +.|++++|.+.++++... ..+..++..+.+.|++++|++.|.+. +|..+|..++..+...|+
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 33455555 678888898888888332 24557777788888888888888764 466688888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (605)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (605)
+++|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877766653 4557778888888888888888887774 36777888888888888999999888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007384 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (605)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (605)
+ ..|..++.++.+.|++++|.+.+..+ .+..+|..++.+|...|+++.|...... +..
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 6 36888888888999999888888876 2567888888888888888888554443 223
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------Ch
Q 007384 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GI 339 (605)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~ 339 (605)
.+.-...++..|.+.|++++|..+++...... ......|+-+.-+|++- +++.+.++.|.. +.+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 34445568888888889999888888877654 33566666666666553 334444444431 223333 45
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH
Q 007384 340 ISYSSLMGACSNAKNWQKALEL 361 (605)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~ 361 (605)
..|..++-.|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 6788888888888888888765
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=178.86 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 304 EVFLSALIDFAGHAGKVEAAFEILQEAKN---QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (605)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (605)
..||+++|++|++.|++++|.++|..|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45777777777777777777777776653 367777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007384 381 ITALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (605)
Q Consensus 381 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 422 (605)
|.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 7777777764 56777777777777777777777777665554
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=7.3e-16 Score=150.69 Aligned_cols=277 Identities=12% Similarity=0.032 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (605)
.+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455556666666666666666666543 3355566666666666666666666666665543 334555666666666
Q ss_pred ccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHccCCHH
Q 007384 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA-IN-CCSQTGDWE 286 (605)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~ 286 (605)
..|++++|.+.++++....+ .+...+..+... .++......+ .. .+...|+++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP---QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST---TTTTC------------------------------------------CCTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC---ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666666554311 111111111000 0011111122 22 377889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
+|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999887544 78889999999999999999999999998875 5568889999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------------TITYSILLVACERKDDVEVGLMLLS 433 (605)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~~~~~~g~~~~a~~~~~ 433 (605)
+.. +.+..+|..+...|...|++++|.+.|+++.+. .|+ ..++..+..++.+.|++++|..+++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 764 456889999999999999999999999998764 344 6788899999999999999999987
Q ss_pred HHHH
Q 007384 434 QAKE 437 (605)
Q Consensus 434 ~~~~ 437 (605)
+..+
T Consensus 311 ~~l~ 314 (327)
T 3cv0_A 311 QNVE 314 (327)
T ss_dssp CCSH
T ss_pred HHHH
Confidence 6543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.3e-17 Score=163.18 Aligned_cols=309 Identities=13% Similarity=0.144 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007384 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (605)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (605)
...|++++|.++++++++|+ +|..+..++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|++.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34577999999999996664 899999999999999999999965 3577899999999999999999999887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCC
Q 007384 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (605)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (605)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 77764 5667889999999999999999988874 3677899999999999999999999999762
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007384 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (605)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 311 (605)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++
T Consensus 150 ----n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 150 ----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 5888999999999999999999988 25789999999999999999996655432 22444456788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 007384 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (605)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~ 383 (605)
..|.+.|++++|..+++...... +-....|+-|.-.|++- +++.+..+.|..- .+++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 66677888887778764 4555666665422 22233 34568889999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007384 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (605)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 427 (605)
|.+.++++.|... |.+. +|+...-..+.....+..+.+-
T Consensus 292 y~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~el 330 (449)
T 1b89_A 292 YDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVEL 330 (449)
T ss_dssp HHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred HHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHH
Confidence 9999999988764 4442 3333333333344445554443
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=176.47 Aligned_cols=150 Identities=13% Similarity=0.210 Sum_probs=126.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (605)
..+||++|++|++.|++++|..+|+.|. +.|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC------HHHHHHHH
Q 007384 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (605)
Q Consensus 169 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~ll 241 (605)
|.++++.|+ .++|.++|++|.+.|+.||.++|+.++.+..+.+ +++..+++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 5789999999999999999999999987665543 333333332 234433 45556677
Q ss_pred HHHHhcC
Q 007384 242 KACANAG 248 (605)
Q Consensus 242 ~~~~~~g 248 (605)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.4e-15 Score=152.78 Aligned_cols=360 Identities=11% Similarity=-0.031 Sum_probs=176.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhCC------------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-----C
Q 007384 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----G 122 (605)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----g 122 (605)
...++..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...++...+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34555666666666677777777765431 223456777777777777777777777665532 0
Q ss_pred --CCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 007384 123 --LKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKP 195 (605)
Q Consensus 123 --~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p 195 (605)
......++..+..++.+.| ++++|++.|++..+.. +-+...+..+... +...++.++|++.|++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 0113455555555554443 5677777777776653 2234444444443 234456666777776666543 33
Q ss_pred CHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007384 196 DRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (605)
Q Consensus 196 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (605)
+..++..+...+.. .++.++|.+.+++.... .+.+..++..+...|.+.|++++|...+++..+.. +.+..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 45555555444433 34566777777766543 13445566677777777777777777777777664 445566
Q ss_pred HHHHHHHHHcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 272 YTIAINCCSQT-------------------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 272 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (605)
+..+...|... +.++.|...|++..+.... +..++..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66555544321 1233444444444433221 223344444555555555555555555544
Q ss_pred CCCCCChh--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007384 333 QGISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (605)
Q Consensus 333 ~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (605)
....+... .+..+.. .+...|+.++|...|++..+. .|+...+... ...+..+++...... +.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CCCH
Confidence 43221110 1111111 122445555555555555443 2222111111 112223333333221 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 410 ITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 410 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
.+|..+..++...|++++|.+.|+++++.
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555666666666666666665553
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=5.5e-15 Score=141.55 Aligned_cols=246 Identities=12% Similarity=0.064 Sum_probs=136.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCCh
Q 007384 173 AKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (605)
...|++..|+..+++.... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...++.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCCCcH
Confidence 3455666666655554332 2222 2334445566666666665554422 1134455555555566666666
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 251 DRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (605)
Q Consensus 251 ~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (605)
++|.+.++.+...+. +.+...+..+...+.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666555432 33445555555666666666666666655 23455556666666666666666666666
Q ss_pred HHHCCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007384 330 AKNQGISVGIIS---YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (605)
Q Consensus 330 ~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (605)
+.+.. |+... ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..+. .
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--D 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 65543 22211 1122233334466777777777666542 445666666666777777777777777766653 3
Q ss_pred C-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 007384 407 P-NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (605)
Q Consensus 407 p-~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~ 437 (605)
| +..++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3 45566666666666666654 4566666665
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.9e-14 Score=146.30 Aligned_cols=357 Identities=10% Similarity=-0.017 Sum_probs=239.8
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-------C----CChhhHHHH
Q 007384 37 RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N----PTLSTFNML 98 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~----~~~~~~~~l 98 (605)
..|++++|++.|++..+. ...+.....+..++.++...|++++|...|+++. . ....+++.+
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 789999999999987642 1124455667778888888899999998887642 1 234456655
Q ss_pred HHHHHh--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 99 MSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 99 l~~~~~--~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
..++.. .+++++|...|++..+.. |-++..+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHH
Confidence 555544 457999999999999875 4456666666555 445678889999999988764 446667766666555
Q ss_pred h----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc--
Q 007384 174 K----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-- 247 (605)
Q Consensus 174 ~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 247 (605)
. .++.++|.+.+++..... +.+..++..+...|...|++++|...+.+..... +.+..++..+..+|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHH
Confidence 4 467789999999988764 5678889999999999999999999999988642 34556666666555432
Q ss_pred -----------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHH
Q 007384 248 -----------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV--FLS 308 (605)
Q Consensus 248 -----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~ 308 (605)
+..+.|...|++..+.+ +.+..++..+...|...|++++|.+.|++..+....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23567888888887765 5556788899999999999999999999998875543221 222
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007384 309 ALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (605)
Q Consensus 309 ~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (605)
.+.. ...+.|+.++|+..|.+..+.. |+..... +....+..+++...+.. +.+..+|+.+...|...
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELN 443 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 2222 2357899999999999998864 3332222 22244455666655543 45678999999999999
Q ss_pred CChhHHHHHHHHHHhCC-CCCCHHHH
Q 007384 388 DQLPKTMEVLSDMKSLG-LCPNTITY 412 (605)
Q Consensus 388 g~~~~A~~~~~~m~~~g-~~p~~~t~ 412 (605)
|++++|++.|++.++.| ..|+..+|
T Consensus 444 g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 444 EKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHCC----------------------
T ss_pred CCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999988753 33444443
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=2.3e-12 Score=140.59 Aligned_cols=373 Identities=14% Similarity=0.183 Sum_probs=268.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChH
Q 007384 31 SYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (605)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 109 (605)
+...++..|.+.+|+++++++...+. ++.+......++....+. +......+..+...-+ ...+...+...|.++
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHH
Confidence 44566799999999999999985432 224555555454443332 2333333333332222 445677889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
+|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|++.|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 9999999852 22333344433 778899999998865 35788999999999999999999999664
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007384 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (605)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (605)
-|...|..++.++.+.|++++|.+.+....+. .++....+.++.+|++.+++++..... + .++.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 37788999999999999999999999877653 233333445889999999988644432 1 3455
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (605)
..|..+...|...|++++|...|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 67778999999999999999999985 37999999999999999999999876 3568899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh--cCCHH
Q 007384 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACER--KDDVE 426 (605)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~--~g~~~ 426 (605)
...|++..|......+. .+...+..++..|.+.|.+++|+.+++..... .|. ...|+-+...+++ -++..
T Consensus 1261 ve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHH
Confidence 99999999988776543 46667789999999999999999999887653 343 3445444444444 44555
Q ss_pred HHHHHHHHHHHCCCCC------CHHHHHHHHHHHHh--hHHHHH
Q 007384 427 VGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (605)
Q Consensus 427 ~a~~~~~~~~~~g~~p------~~~~~~~li~~~~~--~~~~a~ 462 (605)
++.++|..-. .+.| +...|.-++-.|.+ .+++|.
T Consensus 1334 Ehlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1334 EHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5555554322 2222 34457777766543 344444
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=2.2e-12 Score=140.88 Aligned_cols=339 Identities=12% Similarity=0.135 Sum_probs=255.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 007384 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 111 (605)
...++..|.+++|..+|++.... ..+ ... .....+++++|.++.+++. +..+|..+..++.+.|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~----~~A--~~V---Lie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN----TSA--VQV---LIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH----HHH--HHH---HHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 34566899999999999986311 111 111 1235678999999998874 466788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (605)
...|.+. .|...|..++.++.+.|++++|.+.+...++.. ++....+.++.+|++.+++++. +-| ..
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel-e~f---I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL-EEF---IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH-HHH---Hh-
Confidence 9999653 578888999999999999999999999877763 4444455699999999998853 333 22
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007384 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (605)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (605)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 446677888999999999999999999874 26888999999999999999999887 33588
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (605)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999998876542 2356677899999999999999999998887665 5556677777777765
Q ss_pred c--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCChhHHHHH-------------HHHHHhCCCCCCHH
Q 007384 352 A--KNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTMEV-------------LSDMKSLGLCPNTI 410 (605)
Q Consensus 352 ~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~ 410 (605)
. +++.++.+.|..-.. ++| +...|.-++..|.+.|+++.|... |.+... -..|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~e 1402 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVE 1402 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHH
Confidence 4 456667777764432 222 456799999999999999999832 222221 134566
Q ss_pred HHHHHHHHHHhcC
Q 007384 411 TYSILLVACERKD 423 (605)
Q Consensus 411 t~~~ll~~~~~~g 423 (605)
.|...+.-|...+
T Consensus 1403 lyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1403 LYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhhC
Confidence 6666666665544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-13 Score=129.70 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007384 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (605)
+..+...+...|++++|+..|++..+.. .+..+|..+...+...|++++|...+++.
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 64 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDA 64 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3334444444444444444444443332 33334444444444444444444444443
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=9.5e-14 Score=141.91 Aligned_cols=344 Identities=11% Similarity=0.018 Sum_probs=191.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHH---HHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 007384 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (605)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 105 (605)
...-..+.+.|++++|.+.|++..+.|.. ... ..+..++...|+. ++|+..|++....++..+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYS--EAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC--TGG--GTCC----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCH--HHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 44556677889999999999988877632 211 1233333344555 7888888877655666677776655555
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007384 106 K-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (605)
Q Consensus 106 ~-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (605)
+ ++++|...|+...+.|. ++ .+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4 67788888888887663 22 5566666666655433 3444454444433 34556666777776664
Q ss_pred H----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc---
Q 007384 178 V----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (605)
Q Consensus 178 ~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 247 (605)
+ +.+..+++..... .| ..+..|...|.+.| +.++|++.|+.....+ +++...+..+...|...
T Consensus 157 ~~~~~~~a~~~~~~a~~~--~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT--TD--ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT--CT--THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGS
T ss_pred cccCHHHHHHHHHHHHcC--CH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCC
Confidence 3 3444444433322 22 36666777777777 7777777777776542 34444445566666444
Q ss_pred -CChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 007384 248 -GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----- 318 (605)
Q Consensus 248 -g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 318 (605)
+++++|...|++.. .+ ++..+..|... | ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 57777777777776 32 34556666555 3 45677777777777777665 4555555555555 34
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 007384 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (605)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 390 (605)
++++|...|++.. . -++..+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 7777777777665 2 345556666666655 336777777777776654 22334444444443 3456
Q ss_pred hHHHHHHHHHHhCC
Q 007384 391 PKTMEVLSDMKSLG 404 (605)
Q Consensus 391 ~~A~~~~~~m~~~g 404 (605)
++|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665554
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.4e-13 Score=127.63 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPD----RVVFNA 202 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 202 (605)
.+..+...+...|++++|...|++..+.. .+..++..+...|...|++++|...|++..+... .++ ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555555555555555555544 4445555555555555555555555555443210 011 344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 007384 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (605)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (605)
+...+...|++++|...|++.... .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE----HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 555555555555555555555432 2221 22333444555555555554432 22334444445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 007384 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (605)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (605)
|++++|...|++..+.... +..++..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555554443222 33444444444444444444444444444432 223344444444444444444444444
Q ss_pred HHHH
Q 007384 363 EHMK 366 (605)
Q Consensus 363 ~~m~ 366 (605)
++..
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.4e-13 Score=125.68 Aligned_cols=192 Identities=16% Similarity=-0.006 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007384 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (605)
.+..+...+.+.|++++|...|++.... -+.+...+..+..++.+.|++++|...|++..+.+ +.+...+..+...
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE---NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3333334444444444444444443321 11223333334444444444444444444444333 2333334444443
Q ss_pred HHcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007384 279 CSQT-----------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (605)
Q Consensus 279 ~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (605)
+.+. |++++|...|++..+..+. +...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 3333 4444444444444333221 23333333334444444444444444443333 33333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (605)
+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|+
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444444444444443321 1223333444444444444444444433
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.2e-13 Score=126.29 Aligned_cols=199 Identities=13% Similarity=-0.035 Sum_probs=160.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007384 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (605)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 310 (605)
+++...+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4556678888889999999999999999999876 778899999999999999999999999999887654 67788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007384 311 IDFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (605)
Q Consensus 311 i~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (605)
...+... |++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8899999 99999999999998875 4567888899999999999999999999998876 67888999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 380 LITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
+...|...|++++|+..|++..+. .| +...+..+..++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999998875 45 57778888899999999999998887764
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2e-12 Score=121.10 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (605)
..+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 445555666666677777777776666654 445666666666777777777777777766655432 555666666667
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007384 315 GHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (605)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (605)
...|++++|..+++++.+.+. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776665222 2245566666677777777777777777766543 33466677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 394 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
...|+++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777766532 33455666666777777777777777777766
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.6e-12 Score=128.80 Aligned_cols=246 Identities=10% Similarity=0.064 Sum_probs=160.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
...|+.+...+.+.|++++|+..++.+++.. +-+..+|+.+..++...|+ +++|+..|++.++.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456666677777788888888887777764 5567777777777777775 888888887777764 346677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh-cCC
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQ 249 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~ 249 (605)
++.+.|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++.... +.+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 7777777777777777777664 4466777777777777777777777777776531 3356667777777777 444
Q ss_pred hHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 007384 250 VDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---- 318 (605)
Q Consensus 250 ~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 318 (605)
.++| ...|++..+.+ +.+...|+.+...+.+.| ++++|.+.+.++ +... .+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccc
Confidence 4666 36666666654 455666777666666666 466666666665 3322 24555666666665543
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCChhHHHHHHH
Q 007384 319 -----KVEAAFEILQEA-KNQGISVGIISYSSLMG 347 (605)
Q Consensus 319 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~ 347 (605)
..++|.++++++ .+.+ +.....|..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 235666666665 3332 233344444433
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=1.1e-12 Score=124.46 Aligned_cols=231 Identities=12% Similarity=0.032 Sum_probs=98.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc
Q 007384 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (605)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (605)
....+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.............+|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444455555555555444432 122334444444444555555555555444432100011122344444445555
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (605)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (605)
|++++|...|++..+.+ +.+..+|..+...|...|++++|.+.|++..+.... +...+..+...+...+++++|...+
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544443 233344555555555555555555555544443221 3333333331222223455555555
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHcCCChhHHHHHH
Q 007384 328 QEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIK-LKPT------VSTMNALITALCDGDQLPKTMEVL 397 (605)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 397 (605)
+++.+.. +.+...+..+...+...|+ +++|...|++..+.. ..|+ ..+|..+...|.+.|++++|.+.|
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5444432 2223344444444444444 444444444433210 0011 123444444555555555555555
Q ss_pred HHHHh
Q 007384 398 SDMKS 402 (605)
Q Consensus 398 ~~m~~ 402 (605)
++..+
T Consensus 245 ~~al~ 249 (272)
T 3u4t_A 245 KNILA 249 (272)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.6e-12 Score=116.78 Aligned_cols=197 Identities=12% Similarity=-0.023 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (605)
+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3333334444444444444444433322 1223334444444444444444444444433321 2233333444444444
Q ss_pred c-CCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007384 210 S-GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (605)
Q Consensus 210 ~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (605)
. |++++|...++++... ...+.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 4 4444444444443320 0011112333333444444444444444444443332 22233344444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
.+.+++..+.....+...+..+...+...|+.+.+..+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444444333222112333333333333344444444444333
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=4.8e-12 Score=118.45 Aligned_cols=200 Identities=12% Similarity=0.015 Sum_probs=102.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
...|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445555555666666666666666665543 3345555556666666666666666666655543 2244555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCCh
Q 007384 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (605)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 555555555555555555421122 23344444555555555555555555544321 22344444444555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555544432 33344444444444455555555555544444
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=2.7e-12 Score=127.09 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007384 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (605)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (605)
...|..+...+.+.|++++|++.|++.++.. +-+..+|+.+...+...|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888888899999999999988774 4467888888888888886 999999999888764 446788888888
Q ss_pred HHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCC
Q 007384 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (605)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 284 (605)
++...|++++|+..|+++.... +.+...|..+..++.+.|++++|+..|+++.+.+ +.+..+|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888988888887642 4467788888888888888888888888888876 6677888888888888 555
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC----
Q 007384 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (605)
Q Consensus 285 ~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 353 (605)
.++| ++.|++..+.... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5666 4677777765443 5667777777777766 577777777776 32 2445667777777777653
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 007384 354 -----NWQKALELYEHM-KSIKLKPTVSTMNALITAL 384 (605)
Q Consensus 354 -----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~ 384 (605)
..++|.++|+++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777777 5432 22345555555444
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=6.3e-12 Score=115.14 Aligned_cols=204 Identities=10% Similarity=-0.028 Sum_probs=171.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007384 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (605)
.+...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 345677888888999999999999999988765 5678889999999999999999999999988764 45778899999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc
Q 007384 170 DGCAKA-GQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (605)
Q Consensus 170 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (605)
..+... |++++|...|+++.+.+..|+ ...+..+...+...|++++|...++++.... +.+...+..+...+.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHc
Confidence 999999 999999999999987322333 6778888899999999999999999987642 34577888899999999
Q ss_pred CChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 007384 248 GQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (605)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 299 (605)
|++++|...++.+.+.. + .+...+..+...+...|+.+.|...++.+.+..
T Consensus 161 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp TCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999988875 4 677888888888899999999999999887653
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.3e-12 Score=122.20 Aligned_cols=229 Identities=10% Similarity=-0.062 Sum_probs=106.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccC
Q 007384 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSG 211 (605)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g 211 (605)
...+...|++++|++.|++..+.. +.+..++..+...|...|++++|+..|++..+.+..++ ..+|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444444444444444444432 12223444444444444444444444444444211111 122444444445555
Q ss_pred CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007384 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (605)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 291 (605)
++++|...|++..... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...+...+++++|.+.
T Consensus 89 ~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp CHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444321 1223344445555555555555555555554442 33344444444122222355555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------hhHHHHHHHHHHhcCCHHHHHHH
Q 007384 292 YDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQG-ISVG------IISYSSLMGACSNAKNWQKALEL 361 (605)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~ 361 (605)
|++..+.... +...+..+...+...|+ .++|...++++.+.. ..|+ ..+|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555544322 34444444455555554 455555555544331 0111 13555666666777777777777
Q ss_pred HHHHHhC
Q 007384 362 YEHMKSI 368 (605)
Q Consensus 362 ~~~m~~~ 368 (605)
|++..+.
T Consensus 244 ~~~al~~ 250 (272)
T 3u4t_A 244 WKNILAL 250 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7776654
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=8.7e-13 Score=122.68 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=132.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666677777888888888888877654 5567777778888888888888888888877664 346677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCCh
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (605)
.|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCH
Confidence 8888888888888888777654 445667777777777778888888877777653 133566677777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 007384 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (605)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 299 (605)
++|...|+.+.+.. +.+..++..+...|.+.|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777777776664 4556677777777777777777777777776654
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=4.8e-13 Score=127.03 Aligned_cols=182 Identities=11% Similarity=-0.011 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (605)
|++++|...++.+.+... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344444444444443311 0123344444445555555555555555544432 223444555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007384 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
..|++..+.. +.+..++..+...+.+.|++++|...|+++... .|+.......+..+...|++++|...++....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555544432 223444444444555555555555555544432 12222222222233334444555554444433
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007384 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (605)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 295 (605)
.. +++...+. ++..+...++.++|...+.+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHH
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHH
Confidence 32 22222222 333344444444444444443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=3.6e-11 Score=114.02 Aligned_cols=220 Identities=11% Similarity=-0.024 Sum_probs=103.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 007384 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (605)
++..+...+...|++++|.+.|++... +.+...+..+...|.. .+++++|...|++..+.+ +..++..
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 333333444444444444444444332 1122333334444444 444444444444444432 2344444
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 007384 275 AINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (605)
Q Consensus 275 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (605)
+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 4444444 444555555444444432 33444444444444 455555555555554443 233444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 347 GACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (605)
Q Consensus 347 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 418 (605)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 45544 555555555555555432 34445555555555 555555555555555432 13444445555
Q ss_pred HHh----cCCHHHHHHHHHHHHHC
Q 007384 419 CER----KDDVEVGLMLLSQAKED 438 (605)
Q Consensus 419 ~~~----~g~~~~a~~~~~~~~~~ 438 (605)
+.. .+++++|.+.+++..+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 555 55555555555555553
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.1e-12 Score=122.00 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (605)
.++..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 33333333333334444444443333332211 23333333344444444444444444433332 22333444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|...|+++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 44444444444444444332 22344444444555555555555555555444
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=5.4e-11 Score=112.82 Aligned_cols=222 Identities=12% Similarity=-0.001 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCcCCCCCCHHHH
Q 007384 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (605)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (605)
..++..+...|...|++++|+..|++..+.+ +..++..+...+.. .+++++|...|++.... .+...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHH
Confidence 3344444444555555555555555544422 33444444444544 55555555555554432 134444
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007384 238 GALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (605)
Q Consensus 238 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 309 (605)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 445555555 555555555555555543 34555555555555 566666666666655543 3444555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 310 LIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (605)
Q Consensus 310 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (605)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 5555555 666666666666666553 34555666666666 677777777777666643 255566666
Q ss_pred HHHHc----CCChhHHHHHHHHHHhC
Q 007384 382 TALCD----GDQLPKTMEVLSDMKSL 403 (605)
Q Consensus 382 ~~~~~----~g~~~~A~~~~~~m~~~ 403 (605)
..|.+ .+++++|++.|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 66666 67777777777776664
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=4.2e-13 Score=127.40 Aligned_cols=224 Identities=12% Similarity=-0.039 Sum_probs=143.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
..+|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 4456666777777788888888887777664 4567777778888888888888888888877653 3356777777788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChH
Q 007384 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (605)
|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+....... +++...+ .++..+...++.+
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGW-NIVEFYLGNISEQ 194 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHH-HHHHHHTTSSCHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CcchHHH-HHHHHHHHhcCHH
Confidence 88888888888888877765 3333334444445566678888888886665531 2333333 3556666777777
Q ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 252 RAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (605)
Q Consensus 252 ~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (605)
+|...++...+.... .+..++..+...|.+.|++++|...|++.....+. +.. ....++...|++++|++.+
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hHH---HHHHHHHHHHHHHhhHHHH
Confidence 777777776554211 01356677777777777777777777777765422 222 2233455556666665544
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=3.5e-10 Score=119.54 Aligned_cols=418 Identities=8% Similarity=0.007 Sum_probs=276.6
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH---HHHHHHHHhhCC-----CCChhhH
Q 007384 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (605)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (605)
+..+|..|+ +.+.++.++.+|+++...- |....++...+..-.+.+. ++.+..+|++.. +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 344555555 6789999999999999876 7777777777777777788 999999999853 2788888
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHH
Q 007384 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVN 155 (605)
Q Consensus 96 ~~ll~~~~~~~~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 155 (605)
..-+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887765554443 334477776554 465 44 46788887776542 3457788999999885
Q ss_pred cCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 007384 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (605)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~----~-----------p-----~---~ 197 (605)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222223344322221111 1223445555554321 111 1 1 0 1
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCCCH
Q 007384 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (605)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~ 269 (605)
..|...+.---..+ ..+.+..+|++.... ++-+...|...+..+.+.|+.++|. .+|++..... +.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCH
Confidence 34444444332222 123455678877763 3446678888888888889988896 9999988753 6677
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~ 328 (605)
..|..++...-+.|+++.|.++|+.+..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888889999999999999998875310 132 2357777777778889999999999
Q ss_pred HHHHCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007384 329 EAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (605)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (605)
...+.........|...+..-.+.+ +.+.|..+|+...+. .+.+...|...+......|+.+.|..+|++.......+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 9987611223344444444444544 589999999988875 34567778888888888899999999999988753212
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 408 --NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (605)
Q Consensus 408 --~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (605)
....|...+.--.+.|+.+.+..+.+++.+. .|+......+++-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 2456778888888899999999999999874 34443444444443
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=3.3e-12 Score=130.45 Aligned_cols=342 Identities=11% Similarity=-0.010 Sum_probs=233.6
Q ss_pred HHHHHhhhHHHHHHHHHHhhCC-CCChhhHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 007384 67 FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (605)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 141 (605)
++....+.|++++|++.|++.. ..+...+..+...|...|+. ++|...|+...+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4455667899999999998754 23455566666667777888 8999999988753 5566666776555555
Q ss_pred ----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--
Q 007384 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (605)
Q Consensus 142 ----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 212 (605)
+.++|...|++..+.| .+ ..+..|...|...+.. .++.+.+......| +...+..|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG-EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT-CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7789999999999876 23 3677788888776543 34556666665555 34566667777777774
Q ss_pred --HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----C
Q 007384 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (605)
Q Consensus 213 --~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 283 (605)
.+++..++..... -.|+ .+..|...|.+.| +.++|.+.|++..+.+ +++...+..|...|... +
T Consensus 159 ~~~~~a~~~~~~a~~----~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALN----TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTT----TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHc----CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 4455555555443 2344 7778888999999 8999999999999988 66667667777777665 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-----CH
Q 007384 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (605)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 355 (605)
++++|.+.|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44556666655 4 56899999999999999887 5777888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 007384 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (605)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~ 427 (605)
++|...|++.. +.+...+..|...|.. ..++++|...|++..+.|. |+ ....|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3467788888877776 3489999999999988763 33 34445545543 468999
Q ss_pred HHHHHHHHHHCCC
Q 007384 428 GLMLLSQAKEDGV 440 (605)
Q Consensus 428 a~~~~~~~~~~g~ 440 (605)
|...++...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998774
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.9e-11 Score=107.03 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (605)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 313 (605)
..+|..+...|.+.|++++|...|++..+.+ +.+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555544 444555555555555555555555555555444332 34444444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007384 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (605)
+...++++.+...+.+..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554443 3334445555555555555555555555554432 23344555555555555555555
Q ss_pred HHHHHHHHh
Q 007384 394 MEVLSDMKS 402 (605)
Q Consensus 394 ~~~~~~m~~ 402 (605)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=3.4e-12 Score=128.60 Aligned_cols=302 Identities=14% Similarity=0.029 Sum_probs=155.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CC
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PN 161 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~ 161 (605)
....+......+...|++++|...|+...+.+ +.+ ..++..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 33445555566777777777777777777653 223 245666777777777777777777765432 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------HHHH
Q 007384 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (605)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a 216 (605)
..++..+...|...|++++|...+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566666677777777777777766543210 001 2245555555555565 5555
Q ss_pred HHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007384 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (605)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (605)
...+.+........ ++. +....++..+...|...|++++|...+++..
T Consensus 167 ~~~~~~al~~~~~~-~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 167 VDFYEENLSLVTAL-GDR-------------------------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHT-TCH-------------------------------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCc-------------------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55544432210000 000 0012234444444555555555555554443
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 297 KKGV-IPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 297 ~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
+... .++ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...|.+.|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2100 011 1244455555555555555555555544321 000 13455566666666666666666666554
Q ss_pred hCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCH
Q 007384 367 SIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCP-NTITYSILLVACERKDDV 425 (605)
Q Consensus 367 ~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~ 425 (605)
+... .++ ..++..+...|...|++++|...+++..+ .+-.+ ...++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3110 011 34566666667777777777777666443 12112 234455566666666655
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=6.1e-12 Score=127.16 Aligned_cols=277 Identities=15% Similarity=0.023 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVV 199 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~ 199 (605)
.+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|...|++.... +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556666777777777777766653 1222 35666666666677777777766665432 10 112234
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007384 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (605)
+..+...|...|++++|...+++........ .+ .+....++..+...|
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~-------------------------------~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL-GD-------------------------------RLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hc-------------------------------hHHHHHHHHHHHHHH
Confidence 4444555555555555555555543210000 00 011123444555555
Q ss_pred HccCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 007384 280 SQTGD-----------------WEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS- 336 (605)
Q Consensus 280 ~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 336 (605)
...|+ +++|.+.+.+..+. +..+ ...++..+...+...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555544321 1111 1235666666777777777777777776543110
Q ss_pred ----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----
Q 007384 337 ----VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL----K-PTVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (605)
Q Consensus 337 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 403 (605)
.....+..+...|...|++++|...|++..+... . ....++..+...|...|++++|...+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 1123677888889999999999998887764210 0 11467788888999999999999999987652
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 404 g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
+-.+ ...++..+...+...|++++|.+.++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1346778889999999999999999999873
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=2.6e-10 Score=110.13 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=160.1
Q ss_pred HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007384 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (605)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (605)
++|..+|++.... .+.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566666666553 1334555655555554 34665 78888888887731245667888888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCHHH
Q 007384 280 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 357 (605)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 357 (605)
.+.|++++|.++|++..+..+. +.. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888875432 233 67778888888888888888888888765 344555554443322 3699999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007384 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 434 (605)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~ 434 (605)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.+..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887653 3467889999999999999999999999998853 455 356788888888899999999999999
Q ss_pred HHHC
Q 007384 435 AKED 438 (605)
Q Consensus 435 ~~~~ 438 (605)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=3.5e-11 Score=106.57 Aligned_cols=174 Identities=16% Similarity=0.064 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007384 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (605)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (605)
+..+|..+...|.+.|++++|++.|++..+..+. +..++..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5688999999999999999999999999987655 78889999999999999999999999998875 556778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 427 (605)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988764 4568889999999999999999999999998752 3367889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q 007384 428 GLMLLSQAKEDGVIPNLVMF 447 (605)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~ 447 (605)
|.+.|+++++ +.|+...|
T Consensus 160 A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHh--CCccCHHH
Confidence 9999999998 56655433
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=7.1e-12 Score=126.23 Aligned_cols=281 Identities=14% Similarity=0.018 Sum_probs=179.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 007384 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP- 195 (605)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 195 (605)
.....+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...|++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345555666666777777777777777766653 222 245666666677777777777766665321 1111
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007384 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 275 (605)
...++..+...+...|++++|...+++....... .++. .....++..+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~-------------------------------~~~~~~~~~l 133 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDK-------------------------------VGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccc-------------------------------cchHHHHHHH
Confidence 1234444555555555555555555544321000 0000 0012345555
Q ss_pred HHHHHccCC--------------------HHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 276 INCCSQTGD--------------------WEFACSVYDDMTK----KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 276 i~~~~~~g~--------------------~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
...|...|+ +++|.+.+.+... .+..| ...++..+...+...|++++|...+++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555566 6666666655432 11111 2346778888999999999999999988
Q ss_pred HHCCC-CC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 331 KNQGI-SV----GIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 331 ~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
.+... .+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|+..+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 75411 11 134788899999999999999999998764210 111 567888999999999999999999987
Q ss_pred HhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 401 KSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 401 ~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
.+. +-.+ ...++..+...+...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 652 1111 1557888889999999999999999998753
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=6.2e-12 Score=127.10 Aligned_cols=236 Identities=13% Similarity=0.055 Sum_probs=144.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCHHH
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----G-IEPNVHT 164 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~ 164 (605)
.+..+...+...|++++|...|+.+.+.+ +.+. .++..+...|...|++++|...|++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455667889999999999999998874 3343 47888899999999999999999987653 1 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCC-----------------HHHHHHHHHH
Q 007384 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (605)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 222 (605)
+..+...|...|++++|...|++.... + .+....++..+...+...|+ +++|...+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888899999999999999999887653 1 11124466777778888888 7777777666
Q ss_pred HhhCcC--C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 007384 223 MNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDD 294 (605)
Q Consensus 223 ~~~~~~--~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (605)
...... + ......++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 432100 0 0111234555566666666666666666655443100 01 12455555555566666666655555
Q ss_pred HHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 295 MTKKGVI-P----DEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 295 m~~~~~~-p----~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
....... . ...++..+...+...|++++|...+++.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4332100 0 0223344444444444444444444443
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.2e-11 Score=120.88 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHH
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 410 (605)
++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+. +-.+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444455555555555555544432100 001 334555555666666666666666554431 1001 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 411 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
++..+...+...|++++|...++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455566666666777777776666665
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=3.6e-10 Score=109.17 Aligned_cols=217 Identities=9% Similarity=0.098 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 007384 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~ 173 (605)
++|..+|+...+.. +.++..|..++..+.. .|++ ++|..+|++.++ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777777777653 5567777776666653 4664 677777777766 22 334556777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHH-hcCCh
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 250 (605)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..... +.+...|........ ..|+.
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 777777777777777764 332 22 66666666777777777777777766531 122233332222211 24666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (605)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 327 (605)
++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665543 4455666666666666666666666666666542 222 3445555555555666666666666
Q ss_pred HHHHHC
Q 007384 328 QEAKNQ 333 (605)
Q Consensus 328 ~~~~~~ 333 (605)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=9.1e-09 Score=108.79 Aligned_cols=393 Identities=12% Similarity=0.052 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCC---hHHHHHH
Q 007384 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (605)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~---~~~A~~~ 114 (605)
..+.+..|++.+..+ |.+...+..++..+.+.+.++.+..+|+.+. +.....|..-+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445666778777777 7788888888888888888999999998764 5567788888888888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------
Q 007384 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (605)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (605)
|+..+... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998753 148999999888877666654 334577877554 465 44 4578888887644
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHh----------ccCCHHHHHHHHHHHhhCcCCC----C-----
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNA---LITACG----------QSGAVDRAFDVLAEMNAEVHPV----D----- 231 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~----------~~g~~~~a~~~~~~~~~~~~~~----~----- 231 (605)
..++++.+..+|+..+......-..+|.. ...... ...+++.|...+.++.....++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 24457889999999986422222334432 222110 0112344455554432111111 0
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHH-
Q 007384 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (605)
Q Consensus 232 ------~-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 289 (605)
| + ...|...+..--..+ ..+.+..+|+++.... +.....|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 234544544322222 1234567788888764 668899999999999999999997
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC------------ChhHHHHHHHH
Q 007384 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (605)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~ 348 (605)
++|++..... +.+...|...+......|+++.|.++|+.+..... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988753 33666677788888899999999999999876410 12 23468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007384 349 CSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (605)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 426 (605)
..+.|..+.|+.+|.+..+. + ......|...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999875 2 12334444333333344 4589999999998875 3345666778888888899999
Q ss_pred HHHHHHHHHHHCC
Q 007384 427 VGLMLLSQAKEDG 439 (605)
Q Consensus 427 ~a~~~~~~~~~~g 439 (605)
.|+.+|+++++..
T Consensus 522 ~AR~lferal~~~ 534 (679)
T 4e6h_A 522 QVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=1.6e-11 Score=119.96 Aligned_cols=276 Identities=15% Similarity=0.053 Sum_probs=148.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHH
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHTY 165 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~ 165 (605)
+......+...|++++|...|+.+.+.. +.+ ...+..+...+...|++++|.+.+++..+. +- +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344556777888888888888887764 333 356777888888888888888888776542 11 1124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------HHHHHHHH
Q 007384 166 GALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDVL 220 (605)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 220 (605)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888888877654210 111 2355666666666666 66666655
Q ss_pred HHHhhCcC--C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 221 AEMNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 221 ~~~~~~~~--~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
++...... + ......++..+...+...|++++|...+++..+... .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------------------------~ 215 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-------------------------------E 215 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------------------------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------h
Confidence 54432100 0 000122344444445555555555555544432210 0
Q ss_pred CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 007384 298 KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI--- 368 (605)
Q Consensus 298 ~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 368 (605)
.+. .....++..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|...+++..+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000 0001234444444455555555555554443221 00 01334555555666666666666666555431
Q ss_pred -CCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 369 -KLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 369 -~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
+.. ....++..+...|.+.|++++|...+++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 000 0123555566666666666666666666654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=5.3e-11 Score=119.04 Aligned_cols=309 Identities=9% Similarity=0.013 Sum_probs=139.4
Q ss_pred cCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C--CchHHHHHHHH--HHHhhhHHHHHHH-----------HHHh
Q 007384 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-L--DMDKVYHARFF--NVCKSQKAIKEAF-----------RFFK 85 (605)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~-~--~~~~~~~~~l~--~~~~~~~~~~~A~-----------~~~~ 85 (605)
+..+..-+..|-..++.+++++|..+++++.+.-. . ..+...+..++ +.....+.++.+. ..++
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 34566777889999999999999999999875421 1 11222212111 1111223333333 3333
Q ss_pred hCC--CCChhh------HHHHHHHHHhCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007384 86 LVP--NPTLST------FNMLMSVCASSKDSEGAFQVLRLVQEAGL-KA----DCKLYTTLITTCAKSGKVDAMFEVFHE 152 (605)
Q Consensus 86 ~~~--~~~~~~------~~~ll~~~~~~~~~~~A~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 152 (605)
.+. +.+... +......+...|++++|...++...+.-. .+ ...++..+...|...|++++|...+.+
T Consensus 89 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 89 EIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 321 001011 11123334555666666666655543200 01 123455555555555666655555555
Q ss_pred HHHcC--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 153 MVNAG--I----EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 153 m~~~g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
..+.- . .....+++.+...|...|++++|...|++..+... .++..
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------- 221 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ--------------------------- 221 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------------
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH---------------------------
Confidence 44320 0 00123444455555555555555555554432100 00100
Q ss_pred CcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--
Q 007384 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-----YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-- 298 (605)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 298 (605)
....++..+..+|...|++++|...|++..+ .+.+....++..+...|.+.|++++|.+.+++..+.
T Consensus 222 ------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 222 ------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0012344444444455555555544444433 111222344445555555555555555555444321
Q ss_pred --CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 299 --GVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 299 --~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
+-......+..+...+...|+ .++|..+++.. +.. .....+..+...|.+.|++++|...|++..
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 296 KAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000011123334444555555 44444444433 111 122344555566666666666666666554
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.1e-10 Score=116.86 Aligned_cols=232 Identities=9% Similarity=-0.061 Sum_probs=148.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCCHHHHH
Q 007384 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI------KGTPEVYT 273 (605)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~ 273 (605)
....+...|++++|...|++........+. ...++..+...|...|++++|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666666666666665542111111 134556666667777777777777766554310 11134667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhHHH
Q 007384 274 IAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYS 343 (605)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 343 (605)
.+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777888888888877776532110 11 235667777888888888888888877662 22 33466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007384 344 SLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (605)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~l 415 (605)
.+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888877642 111112335667777888888 77777777665 22333 3456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 007384 416 LVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 416 l~~~~~~g~~~~a~~~~~~~~~ 437 (605)
...+...|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999998888765
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=5.4e-11 Score=122.26 Aligned_cols=225 Identities=12% Similarity=-0.004 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007384 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (605)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (605)
+++++..++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444322 33555566666666666666 66666666655543 2235555666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007384 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (605)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (605)
+..+. .|+...+..+...+...+. .+ ...+.|++++|...|++..+.. +
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~-------------------~~---------~~~~~g~~~~A~~~~~~al~~~-p 210 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQT-------------------DS---------GDEHSRHVMDSVRQAKLAVQMD-V 210 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCC-------------------SC---------HHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhcc-------------------CC---------hhhhhhhHHHHHHHHHHHHHhC-C
Confidence 55554 3444555555555555400 00 0000044555555555554443 3
Q ss_pred CCHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007384 267 GTPEVYTIAINCCSQT--------GDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (605)
Q Consensus 267 ~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (605)
.+...|..+...|... |++++|.+.|++..+.... -+...+..+..+|...|++++|...|++..+.. +
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 289 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-P 289 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 3445555555555555 5666666666666554320 155666666666666777777777776666654 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 337 VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.+...+..+..++...|++++|.+.+.++.
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445566677777777777777777665553
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=4.1e-11 Score=123.18 Aligned_cols=216 Identities=10% Similarity=-0.076 Sum_probs=181.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007384 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (605)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 255 (605)
.+++++..++...... +.+...+..+...+...|++ ++|.+.|++..... +.+...|..+..+|.+.|++++|.+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3566777777666543 44677888888888888998 99999998887642 3457788888899999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 007384 256 VYKMIHKYNIKGTPEVYTIAINCCSQT---------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------G 318 (605)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g 318 (605)
.|++..+.+ |+..++..+...|... |++++|.+.|++..+.... +...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 999988864 5578888899999998 9999999999999887654 688899999999988 9
Q ss_pred CHHHHHHHHHHHHHCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007384 319 KVEAAFEILQEAKNQGIS---VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (605)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (605)
++++|...|++..+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 3 578899999999999999999999999998764 4457789999999999999999998
Q ss_pred HHHHHH
Q 007384 396 VLSDMK 401 (605)
Q Consensus 396 ~~~~m~ 401 (605)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 876653
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=7.3e-12 Score=121.07 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI- 158 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~- 158 (605)
.++..+...+...|++++|...++.+.+. ..+....++..+...|...|++++|...+++.... +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555666666666666555542 11222344455555555555555555555554432 10
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHH
Q 007384 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (605)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (605)
+....++..+...|...|++++|...|++..+.. .... +...+....++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~--~~~~~~~~~~~~ 157 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVL--GKDHPDVAKQLN 157 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhc--CCCChHHHHHHH
Confidence 1122334444444444444444444444433210 0000 000011223344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 239 ALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
.+...+...|++++|...++++.+. + .+....++..+...|...|++++|.+.++++.+
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555554432 1 011233455555666666666666666655543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=8.3e-12 Score=120.67 Aligned_cols=246 Identities=14% Similarity=0.036 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCc-----CCC
Q 007384 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSK-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPV 230 (605)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~ 230 (605)
.++..+...+...|++++|...|+++.+. ..+....++..+...+...|++++|...+++..... ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444444555555555555444431 111223344444555555555555555554443210 011
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----
Q 007384 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----- 298 (605)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 298 (605)
+....++..+...|...|++++|...++++.+. + .+....++..+...+...|++++|.+.|++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122345555666666666766666666665543 1 1122455677777777788888888777776543
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 299 -GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (605)
Q Consensus 299 -~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (605)
+..| ...++..+...+...|++++|...++++.+.. ..+.......
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 1111 23345566666666777777776666665421 0000000000
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
....+..+...+...+.+.+|...++...... +.+..++..+..+|.+.|++++|.++++++.+
T Consensus 243 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 ---HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122223333444555556666665554421 12345566666666677777777777766654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=2.8e-09 Score=106.20 Aligned_cols=230 Identities=11% Similarity=-0.062 Sum_probs=163.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--C----CCHHHH
Q 007384 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNI--K----GTPEVY 272 (605)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~ 272 (605)
....+...|++++|...|++........ ++ ..++..+...|...|+++.|...+++..+... . ....++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3345667788888888888876532111 22 44667777888888888888888887755311 1 124567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhHH
Q 007384 273 TIAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISY 342 (605)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 342 (605)
+.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+.+..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888899999999999988876642 1111 134667778888899999999999998876 43 3337778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHH
Q 007384 343 SSLMGACSNAKNWQKALELYEHMKSIKL---KPT-VSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSI 414 (605)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ 414 (605)
..+...|.+.|++++|...+++..+... .+. ...+..+...|...++ ..+|+..+++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8899999999999999999998875311 122 3456666667777888 77787777762 22333 345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007384 415 LLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 415 ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+...+...|++++|...|+++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999988865
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=4.1e-09 Score=104.79 Aligned_cols=266 Identities=10% Similarity=-0.047 Sum_probs=154.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC----HHHHHHHHH
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK 242 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~ 242 (605)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++....... .++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 3334444555566666666666554431100 111 122344555
Q ss_pred HHHhcCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHH
Q 007384 243 ACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALI 311 (605)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li 311 (605)
.+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777776665442 111 1 2334555666777777777777777776543211 1234566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-hhHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 007384 312 DFAGHAGKVEAAFEILQEAKNQGISVG-IISYS-----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALIT 382 (605)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~ 382 (605)
..+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++..+....+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 777788888888888877764311111 11111 23344678888888888888876543211 1335667778
Q ss_pred HHHcCCChhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 383 ALCDGDQLPKTMEVLSDMKSL----GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888889999999888886542 222222 2556667778889999999998888765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=9.1e-10 Score=97.00 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007384 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (605)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 421 (605)
+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH
Confidence 3333333333333444433333333321 1223333333444444444444444444433321 1123333444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 007384 422 KDDVEVGLMLLSQAK 436 (605)
Q Consensus 422 ~g~~~~a~~~~~~~~ 436 (605)
.|++++|...++++.
T Consensus 157 ~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 157 MGRHEEALPHFKKAN 171 (186)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444433
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.1e-09 Score=96.52 Aligned_cols=166 Identities=10% Similarity=0.026 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (605)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 313 (605)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4567778888999999999999999988765 567889999999999999999999999999876543 67888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007384 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (605)
+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998875 5678889999999999999999999999988764 45678999999999999999999
Q ss_pred HHHHHHHHhC
Q 007384 394 MEVLSDMKSL 403 (605)
Q Consensus 394 ~~~~~~m~~~ 403 (605)
...+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998763
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=7.8e-09 Score=102.73 Aligned_cols=231 Identities=12% Similarity=0.063 Sum_probs=121.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHH
Q 007384 100 SVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALID 170 (605)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~ 170 (605)
..+...|++++|...++.........+.. +++.+...+...|++++|.+.+++.....- ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34566788888888887776643222222 455566677777888888877777654210 111 123455666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCC--CHHHHHHHH
Q 007384 171 GCAKAGQVAKAFGAYGIMRSK----NVK--P-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALM 241 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~ll 241 (605)
.+...|++++|...+++.... +.. | ...++..+...+...|++++|...+++.........+ ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 677777777777777766532 211 2 1234455666667777777777777665542111111 123455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 007384 242 KACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALID 312 (605)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~ 312 (605)
..+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 66666666666666666654431111 101111 122334555666666666555443221110 112334444
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 007384 313 FAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~ 330 (605)
.+...|++++|...++..
T Consensus 262 ~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 445555555555555444
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=4.4e-09 Score=104.77 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=165.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCC----CCHHHH
Q 007384 167 ALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITI 237 (605)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ 237 (605)
.....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+.+......... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556778889999988888765410 122 44677778888888999888888877654211111 124567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007384 238 GALMKACANAGQVDRAREVYKMIHKYN----IK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFL 307 (605)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 307 (605)
+.+...|...|++++|...|++..+.. .+ ....++..+...|...|++++|.+.|++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 778888899999999999888776531 11 1235677888889999999999999988876 4333 36678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHH
Q 007384 308 SALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNA 379 (605)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~ 379 (605)
..+...+.+.|++++|...+++..+.. .+.....+..+...|...++ +.+|...+++.. ..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 888889999999999999999887642 12223455666667777888 777877777632 2233 346677
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 007384 380 LITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
+...|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999988754
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1.3e-09 Score=116.73 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (605)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 313 (605)
..+++.|...|.+.|++++|++.|++..+.+ +.+..+|+.+...|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777777777777777777777765 556677777777777777777777777777765443 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007384 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (605)
+...|++++|++.|++..+.+ +-+...|+.+..+|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777877777777664 4456777777778888888888888888777653 33466777778888888888887
Q ss_pred HHHHHHHHh
Q 007384 394 MEVLSDMKS 402 (605)
Q Consensus 394 ~~~~~~m~~ 402 (605)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=2.9e-09 Score=97.74 Aligned_cols=200 Identities=17% Similarity=0.095 Sum_probs=136.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007384 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (605)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 311 (605)
.|...+......+...|++++|...|++..+.+.+++...+..+...+...|++++|++.|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3556777777888888888888888888887763367777777888888888888888888888776543 556777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 007384 312 DFAGHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALI 381 (605)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li 381 (605)
..+...|++++|...+++..+.. +.+. ..|..+...+.+.|++++|...|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888887764 3334 44667777777888888888888887765 343 45666666
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
..|... +...++++...+ ..+...|.... ....+.+++|...++++.+ +.|+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 666543 334455554432 23344444333 2334557778888887777 445543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=4.9e-09 Score=96.16 Aligned_cols=204 Identities=13% Similarity=0.054 Sum_probs=159.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 007384 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (605)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (605)
+.|+..+......+...|++++|...|++..... .+++...+..+..++...|++++|...|++..+.+ +.+..+|.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHH
Confidence 3467888889999999999999999999988742 12677788789999999999999999999999876 55678899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHH
Q 007384 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSS 344 (605)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 344 (605)
.+...|...|++++|.+.|++..+..+. +. ..|..+...+...|++++|...|++..+.. +. +...+..
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 9999999999999999999999886543 45 457777888899999999999999998874 33 4677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007384 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (605)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (605)
+..+|...| ...++.+...+ ..+...|..... ...+.+++|+..|++..+. .|+....
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 888886544 44455555543 334455544432 3346689999999998874 5654433
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=1.5e-09 Score=116.06 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007384 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (605)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (605)
+..+|+.|...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..|++..+.+ +.+...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999987654 67899999999999999999999999999876 556889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 007384 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (605)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 426 (605)
+|.+.|++++|.+.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+. .| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998864 345889999999999999999999999999884 56 4678999999999999999
Q ss_pred HHHHHHHHHHH
Q 007384 427 VGLMLLSQAKE 437 (605)
Q Consensus 427 ~a~~~~~~~~~ 437 (605)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=2.2e-09 Score=101.75 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=62.6
Q ss_pred hcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 007384 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NV-KPDRVVFNALI 204 (605)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~li 204 (605)
..|++++|+..|++..+. ..+....++..+...|...|++++|+..|++.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665441 11223455666666777777777777777666532 11 11233455555
Q ss_pred HHHhccCCHHHHHHHHHHHhhCc-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007384 205 TACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
..+...|++++|...+.+..... ...+....++..+...|...|++++|...++++.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665554310 00011233344444444444444444444444433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.3e-09 Score=103.29 Aligned_cols=230 Identities=12% Similarity=0.017 Sum_probs=155.2
Q ss_pred hccCCHHHHHHHHHHHhhCc-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 007384 208 GQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIA 275 (605)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 275 (605)
...|++++|..++++..... ...+....++..+...|...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34566666666665554310 011234567888889999999999999999988764 11 2235678899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhH
Q 007384 276 INCCSQTGDWEFACSVYDDMTKK-----GV-IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIIS 341 (605)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 341 (605)
...|...|++++|.+.|.+.... +. .| ...++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988754 11 12 3567788888999999999999999998765 1 1234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH---hCC-CCC-C
Q 007384 342 YSSLMGACSNAKNWQKALELYEHMKSI-------KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK---SLG-LCP-N 408 (605)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g-~~p-~ 408 (605)
+..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+....+..+..... ..+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999988752 1112 22344444444444444333332211111 111 112 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 409 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
..++..+...+...|++++|..+++++.+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999998875
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=2.2e-08 Score=95.71 Aligned_cols=131 Identities=11% Similarity=-0.015 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCC-C----H
Q 007384 236 TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIP-D----E 304 (605)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~ 304 (605)
+|+.+..+|.+.|++++|...|++..+.... .+ ..+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444555555555555555555444332100 00 12344444555553 55555555555443321000 0 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.++..+...+.+.|++++|+..|++..+....... ..+..+..++...|++++|...|++..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23444444444555555555555544443211111 023344444444455555555554444
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=2.8e-08 Score=82.03 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 007384 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (605)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (605)
..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 33444444444444444444444433221 33333334444444444444444444443332 22233344444444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
|++++|...++++.+.. +.+...+..+...+.+.|++++|...|+++.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444443322 1223344444444444444444444444443
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=2.3e-07 Score=88.08 Aligned_cols=238 Identities=8% Similarity=0.066 Sum_probs=146.0
Q ss_pred CccCchhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH--HHHHHHHHHhhCC---CCChh
Q 007384 20 NYAHDVSEQLHSYNRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLS 93 (605)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~ 93 (605)
.|+.....-...+..+.+.|.+ ++|+++++.++..+ |........-..+....+ .+++++++++.+. +.+..
T Consensus 27 ~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~ 104 (306)
T 3dra_A 27 LYDEDYKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ 104 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH
Confidence 3444444455555566666655 58899998888887 666666665555665555 6777777777643 44555
Q ss_pred hHHHHHHHH----HhC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHH
Q 007384 94 TFNMLMSVC----ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHT 164 (605)
Q Consensus 94 ~~~~ll~~~----~~~---~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~ 164 (605)
+|+.-...+ ... +++++++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++++++.. +.|...
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sA 182 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHH
Confidence 666554444 444 66777777777777664 556677777666667777766 7777777777665 446667
Q ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHhhCcCCCCCCHHHH
Q 007384 165 YGALIDGCAKAGQ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITI 237 (605)
Q Consensus 165 ~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~ 237 (605)
|+.-...+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|+..+ +..+...+......-..+...+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 7666666655555 666777766666554 4466666666666666555333 3334443332110012345556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 007384 238 GALMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
..+..+|.+.|+.++|.++++.+.+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 6666666666666666666666654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=4.6e-08 Score=80.66 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (605)
|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555566666666666655543 3345555555555556666666666666655443 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 007384 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (605)
.|++++|.+.|+++.... +.+..++..+...+.+.|++++|...+.++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 556666655555555432 2334455555555555555555555555544
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=6.9e-08 Score=90.50 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 007384 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD-EVF 306 (605)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~ 306 (605)
.+...+..+...+.+.|++++|...|+.+.+.. +.+ ..++..+...|.+.|++++|...|++..+..+ .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666777778888888888888887764 333 56777777888888888888888888776533 122 345
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007384 307 LSALIDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (605)
Q Consensus 307 ~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (605)
+..+..++.. .|++++|...|+++.+.. +.+......+... ..+.. .....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~----~~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHH----HHHHHHH
Confidence 5566666666 777777777777777653 2222222221111 11100 0011245
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCH
Q 007384 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNL 444 (605)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~g~~p~~ 444 (605)
.+...|.+.|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++++++. .|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 6778889999999999999998774 343 34666777777765 8889999999999874 4544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=5e-08 Score=91.47 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCHHHH
Q 007384 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-K-PDRVVF 200 (605)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~~~~~ 200 (605)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555555566666666666666666665542 112 44555566666666666666666666655411 1 113344
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHHhh
Q 007384 201 NALITACGQ--------SGAVDRAFDVLAEMNA 225 (605)
Q Consensus 201 ~~li~~~~~--------~g~~~~a~~~~~~~~~ 225 (605)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 445555555 5666666666665554
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=5.2e-08 Score=87.82 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=68.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007384 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (605)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (605)
+..++.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+..+|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 4455555566666666666555543 3345555566666666666666666666655543 2335555555555544332
Q ss_pred --hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007384 390 --LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (605)
Q Consensus 390 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (605)
...+...++.... ..|....+.....++...|++++|...|+++++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2233334433321 111122233334444555666666666666665 455555444443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=1.3e-07 Score=88.78 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
|...|++..+.+ +++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666655544 45555556666777777777777777777655431 1255666677777777777777777777776
Q ss_pred hCCCCC-----CHHHHHHHHHHHh--ccC--CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007384 190 SKNVKP-----DRVVFNALITACG--QSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 190 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
+. .| +..+...|+.++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 44 2344444544422 223 677777777776543 344333334444667777777777777655
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 007384 261 HKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (605)
Q Consensus 261 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 299 (605)
.+.. -+.++.+...+|......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4421 03345555445444444555 6667777766654
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=2.7e-08 Score=95.01 Aligned_cols=207 Identities=10% Similarity=0.049 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCCHH
Q 007384 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWE 286 (605)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 286 (605)
++++|...|.+. ...|...|++++|...|.+..+. +-++ ...+|+.+...|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477887777765 33567789999999888877554 2111 1457888888899999999
Q ss_pred HHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----hhHHHHHHHHHHhcCCH
Q 007384 287 FACSVYDDMTKKGVI-PD----EVFLSALIDFAGHA-GKVEAAFEILQEAKNQGISV-G----IISYSSLMGACSNAKNW 355 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 355 (605)
+|+..|++..+.... .+ ..++..+...|... |++++|+..|++..+..... + ..+++.+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 998888877542110 01 34667777777775 88888888888776542110 1 34577778888888888
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--h
Q 007384 356 QKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TYSILLVACE--R 421 (605)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~--~ 421 (605)
++|...|++..+....... ..|..+..++...|++++|+..|++..+ +.|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 8888888887765322211 1466677777888888888888887765 234321 2334455553 3
Q ss_pred cCCHHHHHHHHHHHHH
Q 007384 422 KDDVEVGLMLLSQAKE 437 (605)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (605)
.+++++|...|+++.+
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 4567777766655543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=4.3e-08 Score=88.36 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHccCCHHHHHHHHHHHHHCC
Q 007384 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI----------------AINCCSQTGDWEFACSVYDDMTKKG 299 (605)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~ 299 (605)
.+......+...|++++|...|++..+.+ +.+...|.. +...|.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566778899999999999988875 445566777 8888899999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCH--H
Q 007384 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN--WQKALELYEHMKSIKLKPTV--S 375 (605)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~--~ 375 (605)
+. +...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|. ...+...+.... .|+. .
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY 158 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence 54 67888888889999999999999999988875 5567788888888766554 345556666554 3443 3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (605)
.+..+..++...|++++|+..|++..+ +.|+......+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 344455666778889999999998887 46876544433
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=3.3e-08 Score=106.24 Aligned_cols=171 Identities=8% Similarity=-0.038 Sum_probs=118.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChhhHHHHHHHHHh
Q 007384 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (605)
Q Consensus 36 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~ 104 (605)
...|++++|++.|++.. +.. |.+...+..++..+...|++++|+..|+++. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56788888888888877 444 5566666666777777777888887777653 4466677777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (605)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888887777664 4456777777777778888877 77777777654 34566777777778888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007384 185 YGIMRSKNVKPDRVVFNALITACGQSGA 212 (605)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (605)
|++..+.+ +-+...+..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 87776653 2234556666666655443
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=8.4e-07 Score=83.26 Aligned_cols=244 Identities=11% Similarity=0.011 Sum_probs=145.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHH
Q 007384 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (605)
.-.|.+..++.-..++... . ....-..+.+++...|++... ..-.|....+..+.. |...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~--~-~~~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKV--T-DNTLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCC--C-CHHHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHhhHHHHHHHHHHhcCcc--c-hHHHHHHHHHHHHHcCCCccC-----------CCCCHHHHHHHHHHH-Hhccc----
Confidence 3456777666633332211 1 222333345666666665421 011344333333332 33322
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (605)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (605)
|...|++..+.+ .++..++..+...+...|++++|++++.+....+.. -+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 455566667777888888888888888877666541 245667777778888888888888888887
Q ss_pred HCCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 332 NQGISV-----GIISYSSLMGA--CSNAK--NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 332 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
+.. | +..+...|..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 653 4 24444455544 22233 788888888888764 35533334444478888888888888886654
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007384 403 L-----GL---CP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (605)
Q Consensus 403 ~-----g~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (605)
. .. .| |..++..++......|+ ++.++++++.+ ..|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 2 00 14 45556566666666676 77788888887 44554
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=1.2e-06 Score=89.69 Aligned_cols=101 Identities=11% Similarity=0.131 Sum_probs=53.6
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHHHHHHHHhCCC-hHHHHH
Q 007384 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (605)
Q Consensus 38 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~A~~ 113 (605)
.| +++.|+++|+.+...- |. ++.+.+..+|++.. .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666666666665432 21 34666666666543 3566666666665544442 344555
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHH
Q 007384 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVN 155 (605)
Q Consensus 114 ~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 155 (605)
+|+..... |. +.+...|...+..+. ..++.+.+.++|+..+.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 66655542 32 335566666665543 23456677777777765
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=2.9e-08 Score=86.86 Aligned_cols=165 Identities=12% Similarity=0.140 Sum_probs=99.5
Q ss_pred cCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CChhhHHHHH
Q 007384 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM 99 (605)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll 99 (605)
|......+..-..+.+.|++++|...|++..+.+ |.+...+..++.++...|++++|+..|+++.. |+...+..+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence 3444555556667778888888888888887766 66777777777777777888888888877642 2333222221
Q ss_pred HH-HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 007384 100 SV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQ 177 (605)
Q Consensus 100 ~~-~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~ 177 (605)
.. +...+....|...++...+.. |.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11 112223334566666666543 3456666666666666677777777666666553111 23456666666666666
Q ss_pred HHHHHHHHHHHH
Q 007384 178 VAKAFGAYGIMR 189 (605)
Q Consensus 178 ~~~A~~~~~~m~ 189 (605)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666666543
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=2.7e-06 Score=80.65 Aligned_cols=219 Identities=8% Similarity=-0.018 Sum_probs=110.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---G 176 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g 176 (605)
...++|+.+++.++..+ +-+..+|+.--..+...+ +++++++.++.+.... +.+..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 33456777777776654 445566666666666666 6777777777666553 33444555544444 333 4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCC-----
Q 007384 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ----- 249 (605)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----- 249 (605)
++++++.+++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++.+.... +.|...|+.-.....+.+.
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhh
Confidence 5666666666665543 345555555554455555554 5555555555431 3344445444444444443
Q ss_pred -hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 250 -VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFE 325 (605)
Q Consensus 250 -~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (605)
++++.+.++.+...+ +.+..+|+-+-..+.+.|+... +..+..++...+ -..+...+..+...|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 455555555555544 4445555555554444444222 222333322211 01133444444444444444444444
Q ss_pred HHHHHH
Q 007384 326 ILQEAK 331 (605)
Q Consensus 326 ~~~~~~ 331 (605)
+++.+.
T Consensus 280 ~~~~l~ 285 (306)
T 3dra_A 280 VYDLLK 285 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=5e-08 Score=82.72 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=107.9
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007384 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (605)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (605)
++.++.+.|++++|+..|.+..+. +...+..+...|.+.|++++|...|+..++.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 445566788999999988876532 34466677888999999999999999988875 56788899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007384 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (605)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (605)
++|+..|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988774 34678888888899999988776655 47766653 4466777766666665553
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1e-07 Score=90.72 Aligned_cols=160 Identities=11% Similarity=0.102 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChhhHHHHH-HHH
Q 007384 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM-SVC 102 (605)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll-~~~ 102 (605)
......-..+.+.|++++|.+.|++..+.. |.+...+..++..+...|++++|...|+++. .|+........ ..+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 333333444445566666666666555554 4455555555555555555555555555543 23322211111 123
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 007384 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKA 181 (605)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A 181 (605)
.+.++.+.|...++...+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 44445555555555555443 344555555555555555555555555555544211 0134455555555555555555
Q ss_pred HHHHHHH
Q 007384 182 FGAYGIM 188 (605)
Q Consensus 182 ~~~~~~m 188 (605)
...|++.
T Consensus 275 ~~~~r~a 281 (287)
T 3qou_A 275 ASXYRRQ 281 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=4e-08 Score=105.57 Aligned_cols=173 Identities=14% Similarity=-0.017 Sum_probs=118.9
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007384 138 AKSGKVDAMFEVFHEMV--------NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (605)
Q Consensus 138 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (605)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677778887777776 332 3355667777777778888888888887777653 3456777777777778
Q ss_pred cCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007384 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (605)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (605)
.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++ .+.|+++.+.+ +.+...|..+...+.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888887776532 2345566777777788888888 88888777765 556777777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
+.|++..+.+.. +...+..+..++...+
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 888777665332 3445555555554433
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=7.4e-08 Score=84.19 Aligned_cols=159 Identities=12% Similarity=0.096 Sum_probs=85.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 007384 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHA 317 (605)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~ 317 (605)
.+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|++...... +...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 34455666666666666666665544 44556666666666666777777666666554332 33222211111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHH
Q 007384 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEV 396 (605)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 396 (605)
+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12223455555555543 3345556666666666666666666666666543211 234555666666666666666666
Q ss_pred HHHHH
Q 007384 397 LSDMK 401 (605)
Q Consensus 397 ~~~m~ 401 (605)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=1e-06 Score=79.42 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 007384 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYG 186 (605)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 186 (605)
|++.|+...+.| ++.++..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|+..|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 55566666666666666666666666666543 45555566666655 4 6666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCcCCCCCC---HHHHHHHHHHHHh----cCChHHHHH
Q 007384 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRARE 255 (605)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~~A~~ 255 (605)
+..+.| +..++..|...|.. .+++++|..+|++.... .++ ...+..|...|.. .+++++|..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 665554 45555556666655 56666666666665542 221 4455555555655 556666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 007384 256 VYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (605)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 299 (605)
.|++..+. +.+...+..|...|... | ++++|...|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666554 12233455555555432 2 5666666666555554
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=1.9e-07 Score=88.87 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007384 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (605)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (605)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4445566666677777777777777777776653 335666777777777777777777777776654 3443333222
Q ss_pred H-HHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHH
Q 007384 204 I-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCS 280 (605)
Q Consensus 204 i-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~ 280 (605)
. ..+...++.++|...+++.... -+.+...+..+...+...|++++|...|..+.+.+ +.+ ...+..++..+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHH
Confidence 2 2355556666677777666653 13456667777777777777777777777777664 222 566777777777
Q ss_pred ccCCHHHHHHHHHHHH
Q 007384 281 QTGDWEFACSVYDDMT 296 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~ 296 (605)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 7777777777776543
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=3e-08 Score=84.11 Aligned_cols=53 Identities=17% Similarity=-0.031 Sum_probs=20.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|...|++..
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3333333333333333333332 2233333333334444444444444444333
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=1.1e-06 Score=79.35 Aligned_cols=176 Identities=11% Similarity=-0.033 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----CHHHHHHHH
Q 007384 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG----AVDRAFDVL 220 (605)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~ 220 (605)
+|++.|++..+.| +..++..|...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566676666643 66677777777777777777777777777665 45666666666666 5 677777777
Q ss_pred HHHhhCcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHc----cCCHHHHHHH
Q 007384 221 AEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQ----TGDWEFACSV 291 (605)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 291 (605)
++.... .+...+..|...|.. .+++++|...|++..+.+.. ..+.++..|...|.. .+++++|...
T Consensus 77 ~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA-----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT-----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC-----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 776542 244555566666655 56677777777766665421 114556666666655 5566666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007384 292 YDDMTKKGVIPDEVFLSALIDFAGHA-G-----KVEAAFEILQEAKNQG 334 (605)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 334 (605)
|++..+.+- +...+..+...|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666655411 223344444444332 2 5666666666555554
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=8.7e-07 Score=80.81 Aligned_cols=202 Identities=9% Similarity=-0.027 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH-HHH
Q 007384 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDR-VVF 200 (605)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~ 200 (605)
...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 4455556667777788888888888877652 32 346667777778888888888888877765211 111 133
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007384 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (605)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (605)
..+..++.+.+.. .+. .+..+...+...|+.++|...|+++.+.. +.+..++.+.....
T Consensus 82 ~~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~- 140 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH-
T ss_pred HHHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH-
Confidence 3344444332110 000 01112222334556666666666666543 22222222111100
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 007384 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKA 358 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 358 (605)
.+...+. .....+...|.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.++|
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0000000 011234455666677777777777666553111 124466666677777777777
Q ss_pred HHHHHHHHhC
Q 007384 359 LELYEHMKSI 368 (605)
Q Consensus 359 ~~~~~~m~~~ 368 (605)
.+.++.+...
T Consensus 204 ~~~~~~l~~~ 213 (225)
T 2yhc_A 204 EKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=9.8e-07 Score=80.47 Aligned_cols=204 Identities=10% Similarity=-0.023 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCH-HHH
Q 007384 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-P-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITI 237 (605)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 237 (605)
+...+..+...+.+.|++++|+..|+++...... | ....+..+..++.+.|++++|...|+++....+. .+.. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 3445556666777788888888888877764211 1 1345666777777888888888888877654211 1211 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007384 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (605)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (605)
..+..++.+.+.. .+ ..|..+...+...|++++|...|+++.+..+. +..........
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l---- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----
Confidence 3333334332210 01 11223334455678899999999998876433 22222211110
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHH
Q 007384 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT----VSTMNALITALCDGDQLPKT 393 (605)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A 393 (605)
..+...+ ......+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|
T Consensus 140 ------~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 ------VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ------HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0001111 1112356778999999999999999998753 43 25688899999999999999
Q ss_pred HHHHHHHHhC
Q 007384 394 MEVLSDMKSL 403 (605)
Q Consensus 394 ~~~~~~m~~~ 403 (605)
.+.++.+...
T Consensus 204 ~~~~~~l~~~ 213 (225)
T 2yhc_A 204 EKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998875
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=2.8e-07 Score=97.09 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007384 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (605)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (605)
.|++++|.+.+++.... .+.+...+..+...|.+.|++++|.+.|++..+.+ +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46777788888777643 13346677777777888888888888888877765 556777777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 007384 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (605)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 366 (605)
+.|++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888877766433 56677777777778888888888887777664 34566777777777777 77888888877777
Q ss_pred hCC
Q 007384 367 SIK 369 (605)
Q Consensus 367 ~~~ 369 (605)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 653
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=5.7e-07 Score=94.78 Aligned_cols=153 Identities=10% Similarity=-0.093 Sum_probs=94.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007384 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (605)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (605)
.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776654 455677777777777777777777777777766443 566677777777777777777777
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHhC
Q 007384 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKSL 403 (605)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 403 (605)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77777664 4456677777777777777777777777776643 33466677777777777 7777777777776664
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=2.7e-05 Score=74.56 Aligned_cols=182 Identities=6% Similarity=-0.023 Sum_probs=123.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007384 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (605)
Q Consensus 96 ~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (605)
+.+.....+.+..++|+++++.++..+ +-+..+|+.--..+...| .++++++.++.+.... +.+..+|+.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334455566678888888888775 556777888777777777 5888888888888765 5577788887777776
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHHhhCcCCCCCCHHHHHHHHHHH
Q 007384 175 A-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (605)
Q Consensus 175 ~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (605)
. + ++++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.... +.|...|+-....+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYLR 211 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 6 6 7888888888888765 557777775554444444444 6777777766531 44666666666666
Q ss_pred HhcCC-------hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 007384 245 ANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (605)
Q Consensus 245 ~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (605)
.+.+. ++++.+.+++....+ +.|..+|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66654 566667776666665 5566667665555555544
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=2.6e-06 Score=76.68 Aligned_cols=126 Identities=15% Similarity=-0.002 Sum_probs=102.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 007384 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (605)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (605)
..++..+...|++++|+..|++..+++...|..+...+...|++++|...++...+.. +.+...+..+..+|...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556667888899999988877788888888888999999999999999888765 567888888999999999999
Q ss_pred HHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 145 AMFEVFHEMVNAGIEPN----------------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (605)
Q Consensus 145 ~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (605)
+|.+.|++..+.. +.+ ..++..+...|.+.|++++|...|++..+..
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999988753 112 2678888888899999999999999888763
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=1.5e-06 Score=83.60 Aligned_cols=199 Identities=13% Similarity=0.045 Sum_probs=125.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007384 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (605)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHH
Confidence 467778888887766431 111 0 11146777777776653 34567788888888
Q ss_pred HHHHHHHhcCCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHH
Q 007384 255 EVYKMIHKYNIK-----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--V-IPD--EVFLSALIDFAGHAGKVEAAF 324 (605)
Q Consensus 255 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~li~~~~~~g~~~~a~ 324 (605)
..|.+..+.... ....+|+.+...|.+.|++++|+..|++..+.- . .+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888776543210 013467777888888888888888887765321 1 111 2456666667777 8888888
Q ss_pred HHHHHHHHCCCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHH
Q 007384 325 EILQEAKNQGIS-----VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTM 394 (605)
Q Consensus 325 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (605)
..+++..+.... ....+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776543111 01356677777788888888888888777642 11111 225556666677778888888
Q ss_pred HHHHHHH
Q 007384 395 EVLSDMK 401 (605)
Q Consensus 395 ~~~~~m~ 401 (605)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887766
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=8.9e-05 Score=75.91 Aligned_cols=354 Identities=8% Similarity=-0.026 Sum_probs=197.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH-HHHHHHHHhhCC------CCChhhHHHHHHHHH----hC
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLVP------NPTLSTFNMLMSVCA----SS 105 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~------~~~~~~~~~ll~~~~----~~ 105 (605)
-.|+++.+.++|++....- | +..++...+.+..+.++ .+....+|+... ..+...|...+..+. ..
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 4589999999999998853 4 44455555555554432 334455565421 346678888777544 24
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (605)
++.+.+..+|+..+.. |+. ...|......- +......+.++..+.. +.+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 5788899999999873 332 22222222211 1111222222222211 11222233
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccC--C-----HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007384 184 AYGIMRSKNVKPDRVVFNALITACGQSG--A-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (605)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (605)
+++.+...--..+...|...+.--...+ - .+.+..+|+++... .+.+...|...+..+.+.|+.+.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3322221100012334444443322110 0 23455667766652 233455666666666777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007384 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p---~~~~~~~li~~~~~~g~~~~a~ 324 (605)
+++.... +.+...|...... ...++. ++.+.+. +..+ ....|...+....+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~y~~~----~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYYGLV----MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHHHHHH----TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHHHHhh----cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777766 4343333322211 111111 2222110 0001 1245666666666778899999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007384 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (605)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (605)
.+|... +.. ..+..+|......-...+ +.+.|..+|+...+.. +.+...|...+.-..+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999988 322 234455543333333334 6999999999887642 2345567777777788899999999999873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 404 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.....|...+.--...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777788999999999988874
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=1.1e-06 Score=84.36 Aligned_cols=229 Identities=12% Similarity=-0.009 Sum_probs=145.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 007384 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (605)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 116 (605)
..|++++|.+++++..+... .. ++...+++++|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 35778888888887765431 10 01112456666666554 3456777888888888887
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPN--VHTYGALIDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 117 ~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 185 (605)
+..+... .+ -..+|+.+...|.+.|++++|+..|++..+. | .+. ..+++.+...|.. |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7654311 11 1347778888888888888888888876543 2 121 3567778888877 8888888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007384 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVY 257 (605)
Q Consensus 186 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~ 257 (605)
++.... +-.+ ...+++.+...+.+.|++++|+..|++...... +..+. ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877643 1100 145677788888888999888888887764211 11122 235666777777888999999988
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHccCCHHHHHHH
Q 007384 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (605)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~ 291 (605)
++.. .... .. ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8887 4211 11 12344555555 56777666653
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=6.4e-05 Score=72.02 Aligned_cols=174 Identities=6% Similarity=-0.066 Sum_probs=124.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-C-CHHH
Q 007384 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (605)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 215 (605)
+.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445578999999998875 446777888888888888 5999999999999875 55778888766666665 6 7889
Q ss_pred HHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---
Q 007384 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (605)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 284 (605)
++++++.+... -+.+..+|+--.-.+.+.|.++ ++.+.++++.+.+ +.+..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999998864 2456677766655555555555 7888888888776 5677778777777777665
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007384 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (605)
Q Consensus 285 ----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (605)
++++++.+++.....+. |...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 56777777777665544 66666655555544443
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=3.4e-06 Score=68.05 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555556666666666666666665543 3455566666666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007384 172 CAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (605)
|...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665544
No 121
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=5.3e-05 Score=72.22 Aligned_cols=184 Identities=8% Similarity=0.030 Sum_probs=116.8
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHHhhCC---CCChhhHHHHHHHH
Q 007384 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (605)
Q Consensus 37 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~ll~~~ 102 (605)
+.|.++ +|+++++.++..+ |.+..+...-..+....+. +++++.+++.+. +.+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566665 7899999998877 6666655544444433332 566777776643 45666777766666
Q ss_pred HhCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 007384 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (605)
Q Consensus 103 ~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (605)
...+ .+++++.+++.+.+.. +.|..+|+.-..++...|. ++++++.++.+++.. +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 6666 3677888888777765 5577777777767777776 477777777777765 44667777666655554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHhh
Q 007384 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (605)
Q Consensus 176 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~ 225 (605)
+.++++++.+....... +-|..+|+.+-..+.+. +.++++++.++++.+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34666777777666553 44666666544444433 234555555555554
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=9.5e-06 Score=72.92 Aligned_cols=127 Identities=12% Similarity=-0.030 Sum_probs=68.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007384 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (605)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (605)
..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...|++..+.+ +.+..+|..+...|.
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 334444555555555555555432 2344555555555555666666666665555544 344555555666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007384 281 QTGDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (605)
..|++++|.+.|++..+.... | ....+..+..++...|++++|...++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 666666666666655553221 0 11445555555666666666666666655543
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.9e-05 Score=75.15 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHH
Q 007384 312 DFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPT-VSTMNAL 380 (605)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~-~~~~~~l 380 (605)
..+...+++++|...+.++.+.... ++ ..+++.+...|...|++++|...|+++.+ . +..+. ..+|..+
T Consensus 123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl 202 (293)
T 3u3w_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 3334444445555555444442111 11 12355555555555555555555555542 1 11111 2345556
Q ss_pred HHHHHcCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007384 381 ITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKD-DVEVGLMLLSQAKE 437 (605)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~ 437 (605)
...|.+.|++++|+..+++..+ .+..+. ..+|..+..++.+.| .+++|.+.++++..
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6666666666666666655432 111122 445666666666666 34666666666543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.48 E-value=5.6e-06 Score=70.92 Aligned_cols=127 Identities=11% Similarity=0.042 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
.|..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|.+.+++..+.. +.+..+|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45555666677777777777777776654 4456677777777777777777777777766653 335666667777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~ 223 (605)
..|++++|...|++..+.. +.+...+.. +...+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777766543 223444432 223355566666666666544
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=5e-06 Score=67.71 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (605)
..+......+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556666777777777777777776654 5566777777777777777777777777776654 34566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007384 173 AKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (605)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777776665
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=7.1e-06 Score=70.22 Aligned_cols=93 Identities=12% Similarity=-0.036 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007384 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (605)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (605)
..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 333444444445555555444444433 233444444444444444444444444444443221 333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 007384 318 GKVEAAFEILQEAKN 332 (605)
Q Consensus 318 g~~~~a~~~~~~~~~ 332 (605)
|++++|...++++.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=2.8e-06 Score=74.04 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=89.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 007384 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (605)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 392 (605)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777888887777664 4567778888888888888888888888877653 3466777777777 7788888 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
|+..|++..+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999888887742 234677778888888899999999999888874
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=9e-06 Score=65.49 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007384 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (605)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (605)
+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+.... +..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 3333344444444444444444443332 223333444444444444444444444443332211 23333333333444
Q ss_pred cCCHHHHHHHHHHHH
Q 007384 317 AGKVEAAFEILQEAK 331 (605)
Q Consensus 317 ~g~~~~a~~~~~~~~ 331 (605)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444333
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.44 E-value=7.1e-06 Score=66.82 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (605)
....|.+.|++++|...|++..+.+ +.+..+|..+..+|.+.|++++|+..|++..+.+.. +...|..+..++...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCC
Confidence 3333444444444444444443333 333334444444444444444444444443333221 23333333333344444
Q ss_pred HHHHHHHHHHHHH
Q 007384 320 VEAAFEILQEAKN 332 (605)
Q Consensus 320 ~~~a~~~~~~~~~ 332 (605)
+++|.+.|++..+
T Consensus 97 ~~~A~~~~~~al~ 109 (126)
T 4gco_A 97 WSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=8.4e-06 Score=75.46 Aligned_cols=199 Identities=10% Similarity=0.024 Sum_probs=139.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHHHHCCCCCC---------------
Q 007384 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA-------INCCSQTGDWEFACSVYDDMTKKGVIPD--------------- 303 (605)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 303 (605)
..++...|.+.|.++.+.+ +.....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888888876 5667777777 4555555555555554444333 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 007384 304 -------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--V 374 (605)
Q Consensus 304 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 374 (605)
..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233445667788899999999998877654 333366667778899999999999998666531 111 2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007384 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (605)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (605)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+...+.+|.+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL~~ 249 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHHhC
Confidence 3677788899999999999999999875433254 34566777888999999999999999998 4566555555543
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=1.1e-05 Score=76.87 Aligned_cols=205 Identities=8% Similarity=0.001 Sum_probs=134.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHH
Q 007384 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI---TIGALMKACANAGQVDRAREVYKMIH 261 (605)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (605)
+..+......|+..+...+...+.-.-+ .++.. ....+.. .+...+..+...|++++|..++++..
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~-----~~~~~------~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII-----HFYEV------LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH-----HHHHT------TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH-----HHhCC------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3444333346777777766666543311 12211 1122222 23334667888899999999998887
Q ss_pred hcCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 262 KYNIKGTPE------VYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 262 ~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
+.. +.+.. .+..+...+...|++++|+..|++....... ++ ..+++.+...|...|++++|...++++
T Consensus 103 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 103 KKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp TTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 743 22221 3345667777778999999999988874322 23 236788888889999999999999888
Q ss_pred HHC-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHcCCC-hhHHHHHHH
Q 007384 331 KNQ-----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT-VSTMNALITALCDGDQ-LPKTMEVLS 398 (605)
Q Consensus 331 ~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~ 398 (605)
.+. +..+ ...++..+...|.+.|++++|...+++..+ .+..+. ..+|..+..+|.+.|+ +++|++.++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 741 1112 234778888889999999999999887764 222222 5678888888888885 589988888
Q ss_pred HHH
Q 007384 399 DMK 401 (605)
Q Consensus 399 ~m~ 401 (605)
+..
T Consensus 262 ~Al 264 (293)
T 3u3w_A 262 KAS 264 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.43 E-value=8.2e-07 Score=84.07 Aligned_cols=96 Identities=14% Similarity=-0.075 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (605)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (605)
..+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555543 334555555555555556666665555555544322 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007384 315 GHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~ 332 (605)
...|++++|...|....+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=2.1e-05 Score=72.76 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=123.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCCC---------------
Q 007384 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (605)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 161 (605)
..++...|.+.|....+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788888888888888765 5567777766 4555555555555554444433 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC-
Q 007384 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (605)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 233 (605)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 2233445667778888888888888777653 44435555666778888888888888755431 0 111
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 007384 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (605)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 299 (605)
...+..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2356667777888888888888888876543213 23456666777778888888888888887764
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=1.9e-06 Score=72.60 Aligned_cols=99 Identities=7% Similarity=-0.036 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
+...+..+...+.+.|++++|...|+...+.. |.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34456666667777788888888888777764 5567777777777878888888888887777664 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007384 171 GCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (605)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888888777765
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=1.9e-05 Score=75.07 Aligned_cols=167 Identities=10% Similarity=0.012 Sum_probs=114.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--hh
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS---VG--II 340 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 340 (605)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+.+..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566677778888888888776665332111 12333455567778888888888887754211 11 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-H
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMKS---I-KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-T 409 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 409 (605)
+++.+...|...|++++|...|++..+ . +..+ ...+++.+...|.+.|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888889999999999999988762 1 1111 1257888888999999999999999887542 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 007384 410 ITYSILLVACERKDDVEVG-LMLLSQAKE 437 (605)
Q Consensus 410 ~t~~~ll~~~~~~g~~~~a-~~~~~~~~~ 437 (605)
.+|..+...+.+.|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777777654
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.41 E-value=2.5e-05 Score=74.27 Aligned_cols=165 Identities=6% Similarity=-0.050 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--H
Q 007384 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--E 304 (605)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~ 304 (605)
.+...+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|...+.+..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566777888888888888777665322 21 2234456667788899999999888775322 112 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-
Q 007384 305 VFLSALIDFAGHAGKVEAAFEILQEAKN---QG-ISV--GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT- 373 (605)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~- 373 (605)
.++..+...|...|++++|...+++..+ .. ..+ ...+++.+...|.+.|++++|...+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888889999999999999988763 21 111 1257888999999999999999999987642 11111
Q ss_pred HHHHHHHHHHHHcCCChhHH-HHHHHHHH
Q 007384 374 VSTMNALITALCDGDQLPKT-MEVLSDMK 401 (605)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 401 (605)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788899999999999999 77777754
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=6.1e-07 Score=84.98 Aligned_cols=96 Identities=8% Similarity=-0.084 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (605)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555566666666665555543 3345555555555555666666666555555442 23445555555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 007384 173 AKAGQVAKAFGAYGIMRS 190 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~ 190 (605)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=9.3e-06 Score=66.40 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (605)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 313 (605)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4445555555555555555555555555543 334455555555555555555555555555544322 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 007384 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (605)
+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 555555555555555554442 222333444444443
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=7e-06 Score=66.81 Aligned_cols=117 Identities=10% Similarity=0.035 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (605)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555555666666666666666665543 3455566666666666666666666666665543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007384 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (605)
.+.|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666655542 2344455555555544443
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=6e-06 Score=67.56 Aligned_cols=115 Identities=11% Similarity=0.054 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
+...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34456666666666677777777776666543 3456666666666666666666666666666543 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007384 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (605)
.+.+.|++++|.+.|++..+.. +.+...+..+...+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 6666666666666666665442 222334444444443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=1e-05 Score=65.81 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (605)
+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+.+..+.... +...+..+...+...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCC
Confidence 3333444444444444444443332 223333444444444444444444444443332211 23333333333333444
Q ss_pred HHHHHHHHHHHH
Q 007384 320 VEAAFEILQEAK 331 (605)
Q Consensus 320 ~~~a~~~~~~~~ 331 (605)
+++|...++...
T Consensus 96 ~~~A~~~~~~~~ 107 (131)
T 2vyi_A 96 HVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=2.1e-06 Score=74.87 Aligned_cols=119 Identities=8% Similarity=0.067 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH-HHhcCCH--HH
Q 007384 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNW--QK 357 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 357 (605)
..|++++|...+++..+.... +...+..+...|...|++++|...+++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555555555555444322 44555555555556666666666666555543 2344555555555 5566665 66
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
|...|++..+.. +.+...|..+...|...|++++|+..|++..+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666665542 23355566666666666666666666666655
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.37 E-value=3.2e-06 Score=71.21 Aligned_cols=103 Identities=8% Similarity=-0.116 Sum_probs=72.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 007384 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (605)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 416 (605)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 34456666777777777777777777777653 345677777777777777778887777777663 34 456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 417 VACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
.++...|++++|...|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 777777888888877777777 345543
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=3.3e-06 Score=75.22 Aligned_cols=156 Identities=10% Similarity=0.039 Sum_probs=92.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhHHHHHHHHHHhcCCH
Q 007384 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKNW 355 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~ 355 (605)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++.... +. +....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45566666664433322 11123445555666666666666666666665541 11 12345566677777778888
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCC
Q 007384 356 QKALELYEHMKSI----KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN----TITYSILLVACERKDD 424 (605)
Q Consensus 356 ~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~ 424 (605)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+.. -.++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8887777766542 1111 13456677777888888888888887765310 0112 2345677778888899
Q ss_pred HHHHHHHHHHHHH
Q 007384 425 VEVGLMLLSQAKE 437 (605)
Q Consensus 425 ~~~a~~~~~~~~~ 437 (605)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887765
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=1.8e-06 Score=72.69 Aligned_cols=98 Identities=9% Similarity=-0.103 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 007384 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (605)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 416 (605)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.... .| +...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 45566777788888889999988888887654 456778888888888899999999999888774 34 567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 007384 417 VACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
.++...|++++|...|+++++.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999998888773
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=5.3e-06 Score=73.89 Aligned_cols=131 Identities=10% Similarity=0.024 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS--VG 338 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~ 338 (605)
.++..+...+...|++++|...+++..+ .+..| ...++..+...+...|++++|...+.+..+. +.. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444555555555555444432 11111 1233444445555555666555555554432 101 11
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
...+..+...+...|++++|...+++..+. + .+. ..++..+...+...|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 234555666666666666666666655421 1 111 2234556666777777777777776654
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.001 Score=63.29 Aligned_cols=188 Identities=4% Similarity=-0.056 Sum_probs=114.1
Q ss_pred hCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 104 SSKDSE-GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (605)
Q Consensus 104 ~~~~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (605)
+.|.++ +|+.+++.+...+ |-+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444444 6777777777654 3445556544444433332 566777777776654 45677777776666
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc--
Q 007384 173 AKAG--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-- 247 (605)
Q Consensus 173 ~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 247 (605)
.+.+ .+++++.+++++.+.. +-|..+|+.-.-.+...|. .+++++.++.+... -+.|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhh
Confidence 6666 3777777777777664 4566777766666666666 47777777777653 144556666555555444
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHC
Q 007384 248 ------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----------GDWEFACSVYDDMTKK 298 (605)
Q Consensus 248 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 298 (605)
+.++++.+.+......+ |.|..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777665 56666776554444443 2345555555555554
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.30 E-value=3.4e-06 Score=70.99 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
..|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.
T Consensus 56 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 56 RFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333444444444444444333321 122333333334444444444444444433
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=4e-05 Score=60.83 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (605)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555566666677777777777666553 4456666666666666777777777776666553 23455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007384 173 AKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (605)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6667777777666666654
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.6e-05 Score=63.34 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007384 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (605)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 422 (605)
..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 333344444444444444444443322 2233444444444444444444444444444321 11233444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 007384 423 DDVEVGLMLLSQAKE 437 (605)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (605)
|++++|...++++.+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 444444444444443
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=2.8e-05 Score=75.57 Aligned_cols=87 Identities=10% Similarity=-0.093 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (605)
.+|..+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|...|+++.+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555555555555555555555554322 44455555555555555555555555555443 23344555555555
Q ss_pred HhcCCHHHH
Q 007384 350 SNAKNWQKA 358 (605)
Q Consensus 350 ~~~g~~~~A 358 (605)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=2e-05 Score=76.58 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007384 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (605)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (605)
...+..+...|.+.|++++|...|++..+....... . ..+.+..+- +.....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------~-~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------------F-SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------------C-CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc------------C-ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 345666666666666666666666666554322100 0 001110000 0014566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 007384 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427 (605)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 427 (605)
|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777888888888887777653 345677777778888888888888888877764 34 45667777777777777777
Q ss_pred H-HHHHHHHHH
Q 007384 428 G-LMLLSQAKE 437 (605)
Q Consensus 428 a-~~~~~~~~~ 437 (605)
+ ...++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7 446666654
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=1.4e-05 Score=65.16 Aligned_cols=106 Identities=12% Similarity=0.191 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHH
Q 007384 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYS 413 (605)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~ 413 (605)
..+..+...|.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.|++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777776653 3446677777777777777777777777765421 1111 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007384 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (605)
Q Consensus 414 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (605)
.+..++...|++++|++.|++.++ ..|+..+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 666777777888888888877776 345554433
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.2e-05 Score=62.77 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (605)
..|..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555566666777777777777766654 4456666667777777777777777777766653 33456666666677
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007384 173 AKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (605)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777776666543
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=6e-05 Score=59.78 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.+..+..+|...|++++|...|++..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333444444444444444333
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=1.4e-05 Score=66.68 Aligned_cols=98 Identities=8% Similarity=-0.048 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 418 (605)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 4455566677778888888888888877653 3467777788888888888888888888877642 2345667777788
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 007384 419 CERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~ 438 (605)
+...|++++|...|+++.+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888887763
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=2.2e-06 Score=76.31 Aligned_cols=61 Identities=21% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007384 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (605)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (605)
.+..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444444444555555555544444432 22344444444444444555555544444443
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=3.1e-05 Score=60.91 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALI 169 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li 169 (605)
...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3444555555555666666666666555543 3345555555555555555555555555555442 22 344555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 007384 170 DGCAKA-GQVAKAFGAYGIMRSK 191 (605)
Q Consensus 170 ~~~~~~-g~~~~A~~~~~~m~~~ 191 (605)
..+.+. |++++|.+.|+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=3.7e-05 Score=62.54 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC----HHHHHH
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPN----VHTYGA 167 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~----~~~~~~ 167 (605)
.+..+...+.+.|++++|+..|+..++.. |.+...|..+..+|.+.|++++|++.|++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777777777777777777664 4567777777777777777777777777766532 0111 235566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007384 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (605)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (605)
+...+...|++++|++.|++.... .||....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666677777777777777766654 3454433
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=5.8e-05 Score=64.55 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007384 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (605)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (605)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788888899999999999999888764 3467888999999999999999999999988752 235778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 007384 418 ACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~ 438 (605)
++...|++++|...|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=3.6e-05 Score=60.50 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007384 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILL 416 (605)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll 416 (605)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|+..|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4455556666666677777777766666543 3345566666666677777777777777666532 22 355666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHC
Q 007384 417 VACERK-DDVEVGLMLLSQAKED 438 (605)
Q Consensus 417 ~~~~~~-g~~~~a~~~~~~~~~~ 438 (605)
..+... |++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666677 7777777777666654
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.13 E-value=2.8e-05 Score=64.76 Aligned_cols=96 Identities=8% Similarity=-0.024 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|+...... +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555666666677766666666554 4456666666666666666666666666666553 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 007384 174 KAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~ 191 (605)
..|++++|...|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.13 E-value=7.4e-06 Score=72.84 Aligned_cols=139 Identities=9% Similarity=-0.067 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHH
Q 007384 75 KAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----------------KLYTTLIT 135 (605)
Q Consensus 75 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~----------------~~~~~li~ 135 (605)
+.+++|.+.++.... .....+..+...+...|++++|...|+...+.. +.+. .++..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 445555544443221 123345566667777888888888888777643 1122 45555666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 007384 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (605)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (605)
+|.+.|++++|+..++...+.. +.+..++..+..+|...|++++|...|++..+.. +-+...+..+..++...++..+
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665543 3345556666666666666666666666655442 2244455555544444444433
Q ss_pred H
Q 007384 216 A 216 (605)
Q Consensus 216 a 216 (605)
+
T Consensus 175 ~ 175 (198)
T 2fbn_A 175 K 175 (198)
T ss_dssp -
T ss_pred H
Confidence 3
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=3.1e-05 Score=62.88 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 166 (605)
..|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666777777777777777776654 45666777777777777777777777777665421 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (605)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (605)
.+...|.+.|++++|...|++..+. .|+...+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 6677777777777777777776664 34544444333
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=7.6e-05 Score=61.36 Aligned_cols=98 Identities=8% Similarity=-0.081 Sum_probs=53.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007384 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (605)
Q Consensus 91 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (605)
+...|..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|...|+...+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44455555555555556666665555555543 3345555555555555555555555555555443 224455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007384 171 GCAKAGQVAKAFGAYGIMRS 190 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~ 190 (605)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.07 E-value=7.8e-05 Score=61.29 Aligned_cols=97 Identities=13% Similarity=-0.077 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (605)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 313 (605)
...+..+...+...|++++|...|+...+.+ +.+...|..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 4444444555555555555555555554443 334445555555555555555555555555443322 34444445555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007384 314 AGHAGKVEAAFEILQEAKN 332 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~ 332 (605)
+...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=0.00014 Score=60.49 Aligned_cols=111 Identities=14% Similarity=0.029 Sum_probs=76.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 007384 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (605)
.+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35556777777777888888888888877764 344 5667777777778888888888887777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (605)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (605)
..+..+|...|++++|...|++..+.. +.+...+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 777777777888888888877776653 22344444333
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=3.4e-05 Score=62.68 Aligned_cols=94 Identities=11% Similarity=0.186 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHHHH
Q 007384 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSILL 416 (605)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ll 416 (605)
..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|+..+++..+.. ..++ ..++..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333334444444444444444443321 2233334444444444444444444444433211 0011 33344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007384 417 VACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.++...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.03 E-value=6e-05 Score=60.70 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=67.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (605)
+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4445556777777777777777777654 4567777777777777777777777777777664 3356677777777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007384 175 AGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (605)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00023 Score=59.16 Aligned_cols=95 Identities=8% Similarity=-0.027 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 007384 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (605)
..+..+...+...|++++|.+.|++.... .|+ ...+..+...|...|++++|...+++..+.. +.+...+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 33444444444444444444444444321 222 2333344444444444444444444444432 22334444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 007384 274 IAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
.+...+...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.03 E-value=7.2e-05 Score=63.95 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
...|..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3345555556666666666666666666553 3455666666666666666666666666666553 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007384 172 CAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (605)
|.+.|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=7e-05 Score=75.56 Aligned_cols=219 Identities=11% Similarity=-0.028 Sum_probs=106.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 007384 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (605)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 106 (605)
..+.-.+.+++.|++++|++.|.++.+......+... .........+..++ ++..+...|...|
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--------------al~~l~~~y~~~~ 69 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--GASVDDKRRNEQET--------------SILELGQLYVTMG 69 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--SSSBCSHHHHHHHH--------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHH--HHHHHHHHhhhHHH--------------HHHHHHHHHHHCC
Confidence 3455667788999999999999999876532111100 00000001111222 2456677788888
Q ss_pred ChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcC
Q 007384 107 DSEGAFQVLRLVQEAG-LKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPN-VHTYGALIDGCAKAG 176 (605)
Q Consensus 107 ~~~~A~~~~~~m~~~g-~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g 176 (605)
++++|.+.+..+.+.- ..++.. +.+.+-..+...|+.+.|.+++...... +..+. ..++..+...|...|
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 8888888777665321 011111 1222222333445566666655554321 11111 234444555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCC---CCHHHHHHHHHHHHhcCChHHH
Q 007384 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRA 253 (605)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A 253 (605)
++++|..+++++. ....+.. ....++..++..|...|++++|
T Consensus 150 ~~~~A~~~l~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 150 QYKDSLALINDLL-----------------------------------REFKKLDDKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp CHHHHHHHHHHHH-----------------------------------HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHHH-----------------------------------HHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence 5555555554443 2111110 1123444455555555555555
Q ss_pred HHHHHHHHhc--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007384 254 REVYKMIHKY--NIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMT 296 (605)
Q Consensus 254 ~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (605)
..++++.... ....+ ...+..+...+...|++++|...|.+..
T Consensus 195 ~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 195 KASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555544321 11111 2345555566666677777766665554
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.93 E-value=0.00011 Score=75.02 Aligned_cols=117 Identities=12% Similarity=-0.029 Sum_probs=60.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007384 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (605)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (605)
+.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|++.+++..+.... +...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555543 334555555666666666666666666665555332 445555555566666666666
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 007384 324 FEILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYE 363 (605)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 363 (605)
.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555543 2223333334333 555566666666655
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.91 E-value=0.00011 Score=59.18 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=34.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007384 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322 (605)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 322 (605)
.+.+.|++++|...|++..+.+ +.+...|..+...+...|++++|+..|++..+..+. +...+..+..++...|++++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444433 333344444444444444444444444444333222 23333333334444444444
Q ss_pred HHHHHHHH
Q 007384 323 AFEILQEA 330 (605)
Q Consensus 323 a~~~~~~~ 330 (605)
|...+++.
T Consensus 104 A~~~~~~a 111 (121)
T 1hxi_A 104 ALASLRAW 111 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00059 Score=68.66 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=96.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhH
Q 007384 272 YTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIIS 341 (605)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~ 341 (605)
+..+...|.+.|++++|.+.+..+...- ..++.. +.+.+-..+...|+.+.|..++...... +.. .-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666667777777776666554311 111111 1122222333456677777776665432 211 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC-C-C--HH
Q 007384 342 YSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL--GLC-P-N--TI 410 (605)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~ 410 (605)
+..+...|...|++++|..+++++... +-.+. ..++..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777788888888888777766531 11111 346777777888888888888887775431 111 1 1 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 411 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556667778888888877776653
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.83 E-value=0.00057 Score=55.24 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=58.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 007384 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (605)
Q Consensus 98 ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~ 171 (605)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+...+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4445666777777777777766543 2222 456666666777777777777777766653 122 4556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007384 172 CAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (605)
+.+.|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.82 E-value=0.00049 Score=55.63 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
+..+..++...|++++|...|+++.
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.82 E-value=0.00013 Score=61.54 Aligned_cols=131 Identities=13% Similarity=0.008 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 007384 307 LSALIDFAGHAGKVEAAFEILQEAKNQGIS-V----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVST 376 (605)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~ 376 (605)
+..+...+...|++++|...+.+..+.... . ...++..+...|...|++++|...+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444455555555555444332100 0 0134555666666677777777766665431 1001 1345
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666677777778888888777775432 1111 134566677778888888888888877765
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.82 E-value=0.00016 Score=73.88 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=84.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007384 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (605)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (605)
..+.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34566788888888888887764 4567788888888888888888888888888764 446777888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 007384 180 KAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (605)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 221 (605)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877653 2233445545444 677788888888877
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00022 Score=60.70 Aligned_cols=63 Identities=10% Similarity=-0.100 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+++++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3445555555555555555555555555431 22345555555556666666666666665555
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=2.4e-05 Score=62.56 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007384 352 AKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 429 (605)
.|++++|...|++..+.+ -+.+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777642 12234566777777777777777777777776642 224566777777777777888887
Q ss_pred HHHHHHHHC
Q 007384 430 MLLSQAKED 438 (605)
Q Consensus 430 ~~~~~~~~~ 438 (605)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777663
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.78 E-value=0.00024 Score=60.44 Aligned_cols=110 Identities=12% Similarity=-0.013 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQ--------G---------ISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
...+......+.+.|++++|+..|...... . .+.+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888999999999999999998775 1 12234678889999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 007384 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILL 416 (605)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 416 (605)
+.. +.+...|..+..+|...|++++|+..|++..+. .|+.. .....+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l 138 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREM 138 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 864 456889999999999999999999999998874 57644 444333
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.78 E-value=0.00019 Score=60.51 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 007384 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRV 198 (605)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 198 (605)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++.... +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554432100 01 124455555555566666665555554321 0000 022
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 007384 199 VFNALITACGQSGAVDRAFDVLAEM 223 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~ 223 (605)
.+..+...+...|++++|...+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444455555555555555443
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.74 E-value=0.00045 Score=70.15 Aligned_cols=118 Identities=11% Similarity=-0.008 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 007384 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT---------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (605)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 300 (605)
.+..+...|.+.|++++|...|++..+.. +.+ ..+|..+..+|.+.|++++|+..|++..+...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 44445555556666666666666555432 111 23444444444444444444444444444322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH
Q 007384 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (605)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (605)
. +...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.++.+
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 2 33344444444444444444444444444332 222333344444444444333
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00046 Score=70.08 Aligned_cols=119 Identities=8% Similarity=-0.040 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 158 (605)
.|..+...+.+.|++++|...|+..++.. +.+ ...|..+..+|.+.|++++|+..|++.++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 45555555666666666666666665532 111 2444444444444455555555444444432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 007384 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (605)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (605)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 2234444444444444444444444444444432 2223334444444444444433
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.72 E-value=0.00037 Score=68.40 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 007384 237 IGALMKACANAGQVDRAREVYKMIHKYN---------------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (605)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (605)
+..+...+.+.|++++|...|++..+.. -+.+..+|..+..+|.+.|++++|++.+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3444555556666666666665554410 0112344555555555555555555555555554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 007384 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (605)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (605)
+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555443 22344444444444444444433
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.0027 Score=65.99 Aligned_cols=173 Identities=6% Similarity=-0.052 Sum_probs=120.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (605)
...++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467788888888765 5566777776666666666 788888888888765 45777888877777788
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhc-----
Q 007384 176 G--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----- 247 (605)
Q Consensus 176 g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----- 247 (605)
+ +++++++.++++.+.. +-|..+|+.-...+.+.| ..+++++.++++.+. -+.|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhccccc
Confidence 8 6688888888888765 457777877777777777 778888888777653 244666776666655553
Q ss_pred ---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH
Q 007384 248 ---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (605)
Q Consensus 248 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (605)
+.++++.+.++.....+ +.+..+|+-+-..+.+.++.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 34566777777666655 55566676666666665553
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00042 Score=68.07 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHH
Q 007384 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (605)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 240 (605)
+..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..... +.+...+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l 347 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 34456666666666666666666666666543 3345566666666666666666666666655431 2244455555
Q ss_pred HHHHHhcCChHHHH
Q 007384 241 MKACANAGQVDRAR 254 (605)
Q Consensus 241 l~~~~~~g~~~~A~ 254 (605)
..++...++.+++.
T Consensus 348 ~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 348 LKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.64 E-value=0.00011 Score=58.65 Aligned_cols=86 Identities=12% Similarity=-0.073 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007384 105 SKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (605)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (605)
.|++++|...|+...+.+ -+.+...+..+..+|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355556666666655432 12234455556666666666666666666665543 234555556666666666666666
Q ss_pred HHHHHHHhC
Q 007384 183 GAYGIMRSK 191 (605)
Q Consensus 183 ~~~~~m~~~ 191 (605)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.53 E-value=0.00037 Score=67.60 Aligned_cols=146 Identities=17% Similarity=0.081 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (605)
.+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ . ..+|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 3455556667778888888888777654 233221 11111222221111 0 124556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCC-CHHHHHHHHHH-HHhcCChH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKA-CANAGQVD 251 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~-~~~~g~~~ 251 (605)
+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.... .| +...+..+... ....+..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 335566666666666666666666666665532 22 22333333333 22334555
Q ss_pred HHHHHHHHHHhc
Q 007384 252 RAREVYKMIHKY 263 (605)
Q Consensus 252 ~A~~~~~~~~~~ 263 (605)
.+...|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 666666666543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.53 E-value=0.00031 Score=68.11 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007384 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (605)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (605)
..+..+...+.+.|++++|...|.+..... |+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345566666777777777777777766542 22221 122233333322221 13566677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCCHHH
Q 007384 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEV 427 (605)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~-~~~~g~~~~ 427 (605)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776653 34566777777777777777777777777665 345433 33333333 223455666
Q ss_pred HHHHHHHHHH
Q 007384 428 GLMLLSQAKE 437 (605)
Q Consensus 428 a~~~~~~~~~ 437 (605)
+...|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 6777777665
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.0062 Score=63.29 Aligned_cols=171 Identities=8% Similarity=-0.040 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 007384 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG- 318 (605)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 318 (605)
-++|.+.++++...+ +.+..+|+.--..+...|+ ++++++.++.+.+..++ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456778888887776 5566677766666666666 78888888888877665 6777777777777778
Q ss_pred -CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---------
Q 007384 319 -KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDG--------- 387 (605)
Q Consensus 319 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 387 (605)
+++++++.++++.+.+ +-+...|+.-...+.+.| .++++.+.++++.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 6688888888888876 556777777777777777 7888888888887765 45677787776666552
Q ss_pred -----CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 007384 388 -----DQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (605)
Q Consensus 388 -----g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 426 (605)
+.++++++.+.+.... .| |...|.-+-..+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4467888888887764 45 5566776666666666533
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.46 E-value=0.0015 Score=54.37 Aligned_cols=62 Identities=10% Similarity=0.022 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC-----CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 376 TMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPNT-ITY----SILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~-~t~----~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.|+.+..++.+.|++++|+..+++.++. .+.|+. ..| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5556666666666666666666665542 125543 455 6666777777777777777777654
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.45 E-value=0.0018 Score=53.90 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHc-------C
Q 007384 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLK-A-----DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA-------G 157 (605)
Q Consensus 96 ~~ll~~~~~~~~~~~A~~~~~~m~~~g~~-~-----~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g 157 (605)
......+.+.|++++|+..|+..++.... | +. ..|+.+..++.+.|++++|+..+++.++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444566667777777777776654311 0 12 25555555666666666666666555543 2
Q ss_pred CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 158 IEPNVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 158 ~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
+-+...| .....++...|++++|+..|++..
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 1123344 445555555555555555555443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.39 E-value=0.0062 Score=49.93 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHHh
Q 007384 353 KNWQKALELYEHMKS 367 (605)
Q Consensus 353 g~~~~A~~~~~~m~~ 367 (605)
+++++|.+.|++..+
T Consensus 75 ~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 75 KDLRKAAQYYSKACG 89 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 344444444444433
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.36 E-value=0.0076 Score=49.42 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007384 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAF 324 (605)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 324 (605)
++++|.+.|++..+.+ .+... |...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 22222 5555555566666777776666654 44555666666665 66777777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 007384 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIK 369 (605)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 369 (605)
..|++..+.| ++..+..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776654 35556666666666 667777777777766654
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00018 Score=56.38 Aligned_cols=63 Identities=8% Similarity=-0.051 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
..|..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|++.|++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555666666666666555543 334555555555666666666666666655544
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.31 E-value=0.0025 Score=47.47 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 94 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.|..+...+...|++++|...++...+.. +.+..++..+..++.+.|++++|.+.|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444555555555555555554432 334444555555555555555555555555443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.30 E-value=0.00062 Score=56.61 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=64.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 007384 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----------LPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (605)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~ 419 (605)
+.+.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++. .| +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3445566666666655543 3345566655555555544 34777777777763 45 456677777777
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 420 ERK-----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 420 ~~~-----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
... |++++|.+.|+++++ +.|+...|...+.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 765 478899999998888 67887777666555
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.29 E-value=0.0011 Score=67.18 Aligned_cols=124 Identities=7% Similarity=-0.013 Sum_probs=77.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 007384 314 AGHAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNA 379 (605)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~ 379 (605)
+...|++++|+.++++..+. | -+....+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44677788887777766542 1 011245677788888888888888887777653 121 122 356777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 380 LITALCDGDQLPKTMEVLSDMKS---LGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~---~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
|...|...|++++|+.++++..+ .-+-|+ ..+...+-.++...+.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777543 111233 22334444555667777777777777654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00037 Score=54.54 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=20.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
..+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333333333333333332 2223333333334444444444444444433
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.23 E-value=0.00056 Score=56.90 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007384 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN----------WQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (605)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (605)
+.+++|...++...+.+ +.+...|+.+..++...++ +++|+..|++..+.. +.+...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34555555555555544 3345555555555555443 357777777777653 23466777777777665
Q ss_pred -----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 388 -----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (605)
Q Consensus 388 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 418 (605)
|++++|++.|++..+ +.|+...|...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 478999999998887 47877766655544
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.23 E-value=0.0024 Score=50.41 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
|...|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444432 3345555555555555555555555555555442 2234455555555555555555555555544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0048 Score=45.84 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
+..+...+...|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444444432 23334444444444444444444444444443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.14 E-value=0.0021 Score=65.24 Aligned_cols=88 Identities=8% Similarity=-0.069 Sum_probs=41.1
Q ss_pred HhcCCHHHHHHHHHHHHhC---CCC---C-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCc---C-CCCCC-HHHHHHH
Q 007384 173 AKAGQVAKAFGAYGIMRSK---NVK---P-DRVVFNALITACGQSGAVDRAFDVLAEMNAEV---H-PVDPD-HITIGAL 240 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~---g~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~-~~~~~-~~~~~~l 240 (605)
...|++++|+.++++..+. -+. | ...+++.|...|...|++++|..++++..... . .-.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666554421 011 1 13345555556666666666655555443210 0 01122 2344455
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 007384 241 MKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~ 260 (605)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555444
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.11 E-value=0.0035 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.144 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 007384 240 LMKACANAGQVDRAREVYKMIH 261 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~ 261 (605)
+...|...|++++|...|++..
T Consensus 25 lg~~~~~~g~~~~A~~~~~~al 46 (115)
T 2kat_A 25 LGKTYAEHEQFDAALPHLRAAL 46 (115)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333333333333333333333
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.97 E-value=0.032 Score=53.38 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007384 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (605)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (605)
+.+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 6678888888777777899999999999998884 78888888888888999999999999888876 566666653
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.74 E-value=0.0081 Score=45.92 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (605)
...|..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444445555555555555555554443 2334445555555555555555555554443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.73 E-value=0.0086 Score=45.75 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (605)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (605)
.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666666666677777777776666553 23455666666666666666666666666543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.50 E-value=0.036 Score=53.00 Aligned_cols=74 Identities=9% Similarity=-0.042 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007384 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (605)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (605)
+.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 345566666655555557777777777776664 36666665666666667777777777776666 455555443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.48 E-value=0.04 Score=45.22 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 007384 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGL 429 (605)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~ 429 (605)
...+.+.|.+..+.+ .++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 456677777776665 478888888899999988 5669999999988763 35 2445566777889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 430 MLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 430 ~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
+.++.+++ ++|+..-...|..+
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHH
Confidence 99999998 77877666666554
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.25 Score=53.95 Aligned_cols=152 Identities=14% Similarity=0.055 Sum_probs=85.9
Q ss_pred HHhCCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007384 102 CASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (605)
Q Consensus 102 ~~~~~~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (605)
....+++++|.+ ++.. -++......++..+.+.|..++|+++.+.-. .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 344666776655 3311 1112223566666777777777766542211 11233456777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007384 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.. +..+...|...|+.+...++-+..
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 77765433 2567777788888888888888887776642 334455555566666655555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007384 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (605)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (605)
...|. ++.-...|.+.|++++|.+++.+
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44431 33334445556666666665544
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.99 E-value=0.11 Score=56.77 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=26.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (605)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (605)
+...|++++|.++.+.+ .+...|..|...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34556666665554332 245556666666666666666666666553
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.96 E-value=0.017 Score=57.42 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007384 340 ISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNALITALCDGDQLPKTMEVLSDM 400 (605)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (605)
.+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3445555555555555555555554432 110 111 233444444455555555554444443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.91 E-value=0.024 Score=42.82 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=29.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 101 VCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.+.+.|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445555555555555555443 33444 5555555555555555555555555544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.83 E-value=0.041 Score=54.76 Aligned_cols=62 Identities=8% Similarity=-0.063 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 375 STMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (605)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 436 (605)
.+++.+...|...|++++|+.++++.+. .| -.|+ ..+++.|...|..+|++++|..+++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555432 11 1122 2345555666666666666666666554
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.67 E-value=0.031 Score=55.58 Aligned_cols=87 Identities=11% Similarity=0.020 Sum_probs=67.9
Q ss_pred hcCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 007384 351 NAKNWQKALELYEHMKS---IKLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILL 416 (605)
Q Consensus 351 ~~g~~~~A~~~~~~m~~---~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll 416 (605)
..|++++|..++++..+ .-+.|+ ..+++.|..+|...|++++|+.++++.++ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788999998887764 112222 46789999999999999999999999754 22 1233 45688999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007384 417 VACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~ 437 (605)
..|..+|++++|..+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.47 E-value=0.12 Score=38.60 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007384 125 ADCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (605)
Q Consensus 125 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (605)
.|+..+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444433322 455555555555443 233444455555555555555555555555544
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.46 E-value=0.12 Score=38.54 Aligned_cols=66 Identities=5% Similarity=-0.007 Sum_probs=40.8
Q ss_pred CChhhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 90 PTLSTFNMLMSVCASSKD---SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 90 ~~~~~~~~ll~~~~~~~~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
.|+..+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555555543333 566777777666654 445666666666666777777777777776655
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.42 E-value=0.13 Score=51.12 Aligned_cols=88 Identities=17% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHhcCChHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHH
Q 007384 244 CANAGQVDRAREVYKMIHKYN---IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGV-IPD-EVFLSA 309 (605)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~ 309 (605)
+.+.|++++|..++++..+.. +.+ ...+++.+...|...|++++|+.++++... .|. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344555555555555554321 111 133455555556666666666666555432 121 111 234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 007384 310 LIDFAGHAGKVEAAFEILQEAK 331 (605)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~ 331 (605)
+...|...|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5556666666666666665543
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.38 E-value=1 Score=37.81 Aligned_cols=81 Identities=9% Similarity=0.118 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
...|..|.....+.|+++-|...|..... +..+.-.|...|+.+.-.++-+.....| . ++.....
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~-----~n~af~~ 98 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE-D-----FGSMLLN 98 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT-C-----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc-c-----HHHHHHH
Confidence 34455555555555555555555544321 2233334444455444444433333322 1 3333344
Q ss_pred HHhcCCHHHHHHHHHH
Q 007384 172 CAKAGQVAKAFGAYGI 187 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~ 187 (605)
+...|+++++.++|.+
T Consensus 99 ~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 99 TFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 4445555555555533
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.32 E-value=0.13 Score=38.56 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=34.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 007384 241 MKACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (605)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 299 (605)
...+.+.|++++|...|+++.+.+ +.+.. .+..+...|...|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334555666666666666666554 34445 56666666666666666666666665543
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.25 E-value=1.8 Score=39.72 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhCcCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C
Q 007384 213 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 283 (605)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 283 (605)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+.+-..+..++......++.. |
T Consensus 179 l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 45666666666643 455 45677777778774 78888888888888775323467777777777774 7
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHH
Q 007384 284 DWEFACSVYDDMTKKGVI--PDEVFLS 308 (605)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~--p~~~~~~ 308 (605)
+.+++.+.+++.....+. |+....+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888888777665 5544333
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.85 Score=38.35 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=48.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHH
Q 007384 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (605)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (605)
.+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|.... | +..+.-.|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D---~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQH--------S---FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------C---HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhC--------C---HHHHHHHHHHhCCHHH
Confidence 34555555555544441 34555555555555566655555555432 1 2233334444555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007384 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (605)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 293 (605)
..++-+.....|- ++.-...+.-.|+++++.++|.
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444331 3333444445555555555553
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.98 E-value=0.15 Score=41.76 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 007384 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 395 (605)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 395 (605)
..+.+-|.+..+.+ +++..+...+..++++.+ +.+++..+|+...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 44555555555554 356666666777777766 4557777777776643 23 23445556666777777777777
Q ss_pred HHHHHHhCCCCCC
Q 007384 396 VLSDMKSLGLCPN 408 (605)
Q Consensus 396 ~~~~m~~~g~~p~ 408 (605)
.++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777776 3564
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.22 E-value=0.58 Score=36.80 Aligned_cols=96 Identities=15% Similarity=0.036 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHH
Q 007384 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVE 426 (605)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~g~~~ 426 (605)
...+..+.+-|......| .++..+-..+..+++++....+ ++.+++++...+ .| + ....-.+.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455566666555544 3677777777788888877665 888888877653 24 2 233445667788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 007384 427 VGLMLLSQAKEDGVIPNLVMFKCII 451 (605)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~~~~~li 451 (605)
+|++.++.+++ +.|+..-...|-
T Consensus 92 ~A~~~~~~lL~--~eP~n~QA~~Lk 114 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHH
Confidence 88888888887 567654444443
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.21 E-value=1.6 Score=34.48 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007384 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (605)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (605)
+...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344444455555555555555553332 24445555555555555555555555555555544
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.20 E-value=3.3 Score=37.96 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 007384 250 VDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVE 321 (605)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 321 (605)
...|...+++..+.+ +. +...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 179 l~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 457777777777764 22 356788888888884 88899999998888765432356666777777774 8888
Q ss_pred HHHHHHHHHHHCCCC--CChhHHH
Q 007384 322 AAFEILQEAKNQGIS--VGIISYS 343 (605)
Q Consensus 322 ~a~~~~~~~~~~~~~--~~~~~~~ 343 (605)
++.+.+++....... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888887655 5544443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.94 E-value=0.43 Score=36.33 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007384 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (605)
Q Consensus 411 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 437 (605)
.+..+..++.+.|+++.|...++++.+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 333444444444444444444444443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.89 E-value=0.45 Score=38.50 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH-HHHHHHHH------HHHcCCChhHHHHHHHHHHhCC
Q 007384 338 GIISYSSLMGACSNAKNW------QKALELYEHMKSIKLKPTV-STMNALIT------ALCDGDQLPKTMEVLSDMKSLG 404 (605)
Q Consensus 338 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~-~~~~~li~------~~~~~g~~~~A~~~~~~m~~~g 404 (605)
|..+|-..+....+.|+. ++.+++|++.... ++|+. ..|...|. .+...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555665 5666666666542 23331 11111111 1233478999999999987643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007384 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (605)
Q Consensus 405 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (605)
-.- ...|.....--.++|++..|++++.+.+..+..|....-.++-
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 233 6667777777788999999999999999987776654444443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.75 E-value=0.7 Score=35.11 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAG------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (605)
+..|...+.+.++++.|...|+...+.- -.+...++..|..+|.+.|+++.|+..+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444445555555555554443320 012334444455555555555555555554443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.98 E-value=2.8 Score=33.22 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=80.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007384 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (605)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (605)
-.|..++..++..+..... +..-||.+|--....-+.+-..++++.+-.. + |. ..+|++...
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---F--Di----------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---F--DL----------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---S--CG----------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---c--Cc----------HhhhcHHHH
Confidence 3577777777777776542 5566666666666666667777777665431 1 11 123333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (605)
...+-.+-.. ......-++.+...|+-++..+++..+.. +..|++.....+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n~~-----se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNTL-----NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTCC-----CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcch-----HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333222111 13445555666677777777777776533 23456666777777777777777777777777776
Q ss_pred CC
Q 007384 334 GI 335 (605)
Q Consensus 334 ~~ 335 (605)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.92 E-value=5.4 Score=39.65 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=65.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----HH
Q 007384 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PE 270 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~ 270 (605)
...|...+...|++.+|..++.++..+..+.... ...+...+..|...+++..|..++.++... ...+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3456777888888888888888876543332222 334556677888888998888888876421 11222 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007384 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (605)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (605)
.+..++..+...+++.+|.+.|.+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456667777788888888887777643
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.98 E-value=0.71 Score=36.31 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHH
Q 007384 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKT 393 (605)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 393 (605)
.+..+.+-+......| .++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444 3666666667777777776555 777777777653 23 233444566678888888888
Q ss_pred HHHHHHHHhCCCCCC
Q 007384 394 MEVLSDMKSLGLCPN 408 (605)
Q Consensus 394 ~~~~~~m~~~g~~p~ 408 (605)
.+.++.+++. .|+
T Consensus 94 ~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHHh--CCC
Confidence 8888887773 564
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.90 E-value=1.5 Score=35.54 Aligned_cols=114 Identities=10% Similarity=-0.008 Sum_probs=74.9
Q ss_pred CCCChhhHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHhcCChhHHHHHHHHHH
Q 007384 88 PNPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMV 154 (605)
Q Consensus 88 ~~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~g~~~~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~ 154 (605)
.+.|..+|-..+...-+.|+. +...++|++.... ++|+.. .|-.|-- .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888877777888 7888888887764 466421 1111111 1123478888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (605)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (605)
+.. +.=...|......-.+.|++..|.+++......+..| .......+
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 652 3336677777777778888999998888888876443 33333333
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.65 E-value=22 Score=38.67 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=133.3
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHHHHHHHHHHH
Q 007384 137 CAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K-----PDRVVFNALITAC 207 (605)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~li~~~ 207 (605)
....|+.++++.+++.....+ -.+....-..+.-+....|...++..++.......- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345567777777766654311 012223333444445555655567776665543210 0 1111122222233
Q ss_pred hccCC-HHHHHHHHHHHhhCcCCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHH
Q 007384 208 GQSGA-VDRAFDVLAEMNAEVHPVDPDHIT----IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI--NCCS 280 (605)
Q Consensus 208 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~ 280 (605)
+-.|. -+++...+..+... .+..+ -.+|...+.-.|+.+....++..+.+.. +..+...+. -++.
T Consensus 464 a~~GS~~eev~e~L~~~L~d-----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYN-----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHT-----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 33332 23455555555442 12111 1122333445667777777777666532 223333333 3344
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 007384 281 QTGDWEFACSVYDDMTKKGVIPDEVFLS---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (605)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (605)
..|+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+.....+++..+.... ..++.....+.-++...|+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 6678887777777776541 122 2222 23335667778766666777777642 2233333333334445666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007384 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILL 416 (605)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll 416 (605)
+.++++.+.+.+ .|.+..-.++.-|....|.. .++++++..+.. .+|..+-..-+
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai 668 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAM 668 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHH
Confidence 777777666543 45555455555566656554 577788888764 45554433333
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.34 E-value=3.1 Score=30.88 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007384 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (605)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (605)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++++-++.. ..+...+|..+++-+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 90 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHh
Confidence 34566777778888889999999999999999999999999999988754 2333557888876543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.71 E-value=2.2 Score=45.23 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (605)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (605)
...|+++.|+.+-++..... +.+..+|..|..+|.+.|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455555555555544432 333445555555555555555555555444
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.43 E-value=2.8 Score=44.43 Aligned_cols=124 Identities=16% Similarity=0.124 Sum_probs=73.5
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHhhCcCCCCCCHHHH--HHHHHHHHhcCC-hHHHHHHHHHHHhc------CCCC-CH-
Q 007384 202 ALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITI--GALMKACANAGQ-VDRAREVYKMIHKY------NIKG-TP- 269 (605)
Q Consensus 202 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~-~~~A~~~~~~~~~~------~~~~-~~- 269 (605)
.++..+...++ .+.|..+|+++... .|...++ ..++....+.++ --+|.+++.+..+. ..++ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~----~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK----DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 44444555555 57788888888764 3432222 223333333332 22455555444321 1111 11
Q ss_pred ---------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 270 ---------EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 270 ---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
.....=...+...|+++-|+++-++....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222245566788999999998888775332 5778999999999999999998887764
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.26 E-value=2.7 Score=40.97 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNA 202 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 202 (605)
...++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456667777788888887777776653 44677788888888888888888888777643 477777766543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.43 E-value=3.1 Score=40.56 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=85.8
Q ss_pred ChhhHHHHHHHH---HhCCChHHHHHHHHHHHHc--CCC-CCHHHHHHHHHHHHhcCChhHH-HHHHHHHHHcCCCCCHH
Q 007384 91 TLSTFNMLMSVC---ASSKDSEGAFQVLRLVQEA--GLK-ADCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVH 163 (605)
Q Consensus 91 ~~~~~~~ll~~~---~~~~~~~~A~~~~~~m~~~--g~~-~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~ 163 (605)
|...|..++... ...|+.+.|...++..... |-. ++.. ...+-.. ..-+++.. ..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------VL 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------HH
Confidence 444555555432 3457888888888887753 311 1110 0112111 12222222 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh---CcCCCCCCHHHHHH
Q 007384 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA---EVHPVDPDHITIGA 239 (605)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~ 239 (605)
+...++..+...|+.++|...+..+.... +.+...|..++.++.+.|+..+|++.|++... ...|++|...+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 35567788889999999999999887764 66889999999999999999999999987643 23488898776543
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.15 E-value=19 Score=40.80 Aligned_cols=90 Identities=9% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007384 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (605)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (605)
..-|..++..+.+.+.++.+.++-...++..-+.+ ...|..+.+.+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34567777888888888888877766655421112 12578888888888999988888888876533 4567777
Q ss_pred HHHHHhccCCHHHHHH
Q 007384 203 LITACGQSGAVDRAFD 218 (605)
Q Consensus 203 li~~~~~~g~~~~a~~ 218 (605)
|+..+|..|..+.-..
T Consensus 977 LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHCCHHHHHH
T ss_pred HHHHHHhCCChhhhhC
Confidence 8888888877665543
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.91 E-value=8.4 Score=28.65 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 007384 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (605)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (605)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344555566666666667777777777777777777777777776665542 22234455444
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.63 E-value=12 Score=29.60 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
.|+..+--.+..++.++... .+++.+++++.+.+ | . ...+--+.-++.+.|++++|++..+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 57777766777788877664 46888888887754 4 2 34455667789999999999999999988 678776
Q ss_pred HHHHHHHH
Q 007384 446 MFKCIIGM 453 (605)
Q Consensus 446 ~~~~li~~ 453 (605)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.18 E-value=9.3 Score=30.12 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007384 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (605)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (605)
.-+..+-++.+....+.|++......+.+|.+.+|+..|.++|+-++.. ..+...+|..+++-+.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 133 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHh
Confidence 3455666777777789999999999999999999999999999988754 3344557888876543
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.33 E-value=9.9 Score=28.12 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (605)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-+|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 455666666666665442 22222222334556677777776665544 566666666544 4566666666666
Q ss_pred HHHHhCCCCCCHHHH
Q 007384 186 GIMRSKNVKPDRVVF 200 (605)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (605)
..+..+| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666555 3443333
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.68 E-value=15 Score=27.15 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007384 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (605)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 117 (605)
..+.++|-.+-+.+...+. .......-+....++|++.+|..+.+..+.||...|.++-. .+.|-.+.+..-+..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3477888888888887762 22222222333456688888888888888888888877654 466777777776766
Q ss_pred HHHcC
Q 007384 118 VQEAG 122 (605)
Q Consensus 118 m~~~g 122 (605)
+...|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 66655
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.45 E-value=13 Score=29.26 Aligned_cols=71 Identities=6% Similarity=-0.052 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007384 336 SVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (605)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (605)
.|+..+--.+..++.+..+. .+++.+++.+.+.+.......+-.|.-|+.+.|++++|.+..+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 44555555555555555443 34566666655443111234444555666666666666666666665 3554
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.40 E-value=9.4 Score=28.19 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (605)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-+|.. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666655432 22222222334556667777666655443 566666666543 4566666666666
Q ss_pred HHHHhCCCCCCHHHH
Q 007384 186 GIMRSKNVKPDRVVF 200 (605)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (605)
..+..+| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666555 3333333
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.31 E-value=41 Score=38.01 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHH
Q 007384 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (605)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (605)
...++..+.+.+..+.+.++..-. +.+...--.+..++...|++++|.+.|.+... ++..+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~---~~~~~~~l~------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQF------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---SCTTCCCSC-------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hhcccchhh-------
Confidence 334666677778877776654332 22444445566778888999999999977532 222111000
Q ss_pred HhcCChHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 007384 245 ANAGQVDRAREVYKMIHKY-NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAG 318 (605)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g 318 (605)
..... +..+... .. ..-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+..++...|
T Consensus 880 ---~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 880 ---AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp ---SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 00000 0011110 00 111223455555566666666665555444332111111 13555566666666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 007384 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (605)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (605)
++++|...+-.+.....+ ......|+...+..|..+.
T Consensus 953 ~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 666666666555544322 3445555555555555443
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.91 E-value=16 Score=27.04 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007384 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (605)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 117 (605)
..+.++|-.+-+.+...+. .......-+....++|++.+|..+.+..+.||...|.++-. .+.|-.+.+..-+..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3467888888888877762 22222222233456688888888888888888888877654 355666666666656
Q ss_pred HHHcC
Q 007384 118 VQEAG 122 (605)
Q Consensus 118 m~~~g 122 (605)
+...|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 65554
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.03 E-value=20 Score=28.29 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 007384 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (605)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (605)
+.-+..+-++.+...++.|++....+.+.+|.+.+++..|..+|+-++.+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344556666666667777888888888888888888888888887776552 23344565554
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.63 E-value=54 Score=32.35 Aligned_cols=94 Identities=9% Similarity=0.112 Sum_probs=50.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--hhH
Q 007384 273 TIAINCCSQTGDWEFACSVYDDMTK--KGVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKN----QGISVG--IIS 341 (605)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 341 (605)
..|...|...|++.+|.+++..+.. .+..+. ...+...+..|...+++..|..++..+.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566667777777777777776653 222111 13444555566666677666666665532 111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 342 YSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
+...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555556666666665555543
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.68 E-value=74 Score=32.91 Aligned_cols=198 Identities=11% Similarity=0.004 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHH
Q 007384 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC----ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (605)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (605)
+.+.|...+....... .+ +......+-... ...+...++...+...... ..+.....-.+....+.|+++.
T Consensus 229 d~~~A~~~~~~~~~~~-~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHhhhhcc-CC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 5667777776664321 22 222222222222 2223234555555554332 2233333333344456677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007384 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (605)
Q Consensus 288 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (605)
|...|..|...... .....--+..++...|+.++|..+|..+.+. . +|..++ +..+.|..-.. ..
T Consensus 304 a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~l-Aa~~Lg~~~~~-------~~ 368 (618)
T 1qsa_A 304 LNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMV-AAQRIGEEYEL-------KI 368 (618)
T ss_dssp HHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHH-HHHHTTCCCCC-------CC
T ss_pred HHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHH-HHHHcCCCCCC-------CC
Confidence 77777776543221 3333444555666677777777777776542 1 222222 11222211000 00
Q ss_pred CCCCC---CHHH---HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 368 IKLKP---TVST---MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (605)
Q Consensus 368 ~~~~~---~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 432 (605)
....+ .... -..-+..+...|....|...+..+... .+......+.......|.++.+....
T Consensus 369 ~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 00001 1111 112345567788888888888777653 23333334444445566666665444
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.29 E-value=99 Score=33.69 Aligned_cols=84 Identities=13% Similarity=0.271 Sum_probs=51.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCc-------------hHHHHHHHHHHHh--------hhHHHHHHHHHHhhCCCCCh
Q 007384 34 RLIRQGRISECIDLLEDMERKGLLDM-------------DKVYHARFFNVCK--------SQKAIKEAFRFFKLVPNPTL 92 (605)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~ 92 (605)
..++.+...+|+.+.-+..+.+.++. ...+..++...+. +..-+.-+.++|.+.+.|+
T Consensus 154 ~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~d- 232 (963)
T 4ady_A 154 KCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCD- 232 (963)
T ss_dssp HHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchh-
Confidence 34478888888888766654432210 0111222222221 1233456777777776554
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQE 120 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 120 (605)
|..+++...+.++.+.+.++|..+..
T Consensus 233 --y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 --YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66677778888999999999999874
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.16 E-value=19 Score=29.71 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=32.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007384 240 LMKACANAGQVDRAREVYKMIHKYN-IKGT-------PEVYTIAINCCSQTGDWEFACSVYDDMT 296 (605)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (605)
-+..+...|.++.|+-+.+.+.... ..++ ..++..+.+++...+++..|...|++.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3555666677777776666544321 1222 1244555666667777777777776643
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.05 E-value=21 Score=29.50 Aligned_cols=119 Identities=7% Similarity=-0.016 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHH
Q 007384 95 FNMLMSVCASSKDSEGAFQVLRLVQEAG-LKAD-------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHT 164 (605)
Q Consensus 95 ~~~ll~~~~~~~~~~~A~~~~~~m~~~g-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~ 164 (605)
+-.-++.+...+.++.|.-+.+.+.... ..|+ ..++..+.+++...+++..|...|++.++.. +..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3334555677777887777776654321 1233 1255667778888888888888888865421 1111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007384 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (605)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (605)
..++. ....... ......+...---+..+|.+.++.++|+.+++.+..+
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11110 0000000 0011223333334667777778888888877776543
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.56 E-value=35 Score=27.29 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP-NT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p-~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
.|+..+--.+..++.++... .+++.+++++...+ | +. ...--+.-++.+.|++++|+++.+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 56777777777888887764 46888888877643 4 33 3344566788999999999999999998 678765
Q ss_pred HHHHHHHH
Q 007384 446 MFKCIIGM 453 (605)
Q Consensus 446 ~~~~li~~ 453 (605)
-...|-.+
T Consensus 112 QA~~Lk~~ 119 (144)
T 1y8m_A 112 QVGALKSM 119 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=71.60 E-value=0.002 Score=62.89 Aligned_cols=232 Identities=11% Similarity=0.143 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007384 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (605)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (605)
+.+|..|..+....+++.+|++-|-+ ..|+..|..+|....+.|.+++-.+.+...++.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34566666666666666666554422 1255556677777777777777666665544432 233344466667
Q ss_pred HhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH
Q 007384 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (605)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (605)
|++.++..+..+++ . .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 126 yAk~~rL~elEefl----~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHTSCSSSTTTSTT----S-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHhhCcHHHHHHHH----c-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 77777655433222 1 24444445566666667777666666654432 233344455556665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (605)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (605)
.|.+.-++ .-+..||..+-.+|...+.+..|.-.--.+.-. +.-...++..|...|.+++-+.+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 55443221 124567777777888877776654433333322 1122345566777888888888877766
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 007384 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (605)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 397 (605)
... ......|+-|.-.|++- ++++-.+.+
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 322 34567777777777765 445444444
No 260
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=68.72 E-value=0.005 Score=60.18 Aligned_cols=223 Identities=14% Similarity=0.137 Sum_probs=134.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007384 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (605)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (605)
+..|..+..+....++..+|.+-|-+ .-|+..|..++....+.|.+++-.+.+...++. ..+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 44688999998888888888765521 336677999999999999999999988776655 3455666789999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChH
Q 007384 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (605)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (605)
|++.++..+-.+.+ -.||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++.
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------CTTTSSSSSSCSGGG
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------HHHHHHHHHHHHHHH
Confidence 99999976543322 146777778888999999999999888876532 122333344555554
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007384 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (605)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (605)
.|.+.-++ ..++.+|..+-.+|...+.+.-|.-.--.+.-.. | ....++..|-..|.+++.+.+++...
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44432221 1123455555555555555544433332222110 0 11233344455555555555555444
Q ss_pred HCCCCCChhHHHHHHHHHHhc
Q 007384 332 NQGISVGIISYSSLMGACSNA 352 (605)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~ 352 (605)
... .....+|+-|.-.|+|-
T Consensus 257 glE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS
T ss_pred CCC-chhHHHHHHHHHHHHhc
Confidence 221 33444555555555543
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.14 E-value=35 Score=33.52 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=24.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007384 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (605)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (605)
.+..-|.+.|+++.|.+.+.++.....+..--...+..++..+...+++..+...+.++
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444444444444444444443322121122233333444444444444444444443
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.60 E-value=72 Score=31.25 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007384 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (605)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (605)
+...+...|.+.|+++.|.+.|.++......+ -...+-..+..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34456666777777777777777766542221 23455556666666666666666665543
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.51 E-value=18 Score=30.90 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 007384 27 EQLHSYNRLIRQ---GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (605)
Q Consensus 27 ~~~~~~~~l~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (605)
..+..|-.+++. +...++.++|.-|...++-...+.++...+..+-..|++.+|..+|+.
T Consensus 78 RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 78 RFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344445444432 235555555555555554444444444444444444444444444443
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.84 E-value=55 Score=26.18 Aligned_cols=71 Identities=6% Similarity=-0.052 Sum_probs=42.3
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007384 336 SVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (605)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (605)
.|+..+-..+..++.+..+. .+++.+++.+.+.+........-.|.-++.+.|++++|.+..+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 45555555566666666543 45666676666543111233444556677777777777777777776 3564
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.33 E-value=39 Score=30.44 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=36.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 007384 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (605)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (605)
..+.|+++++++....-++.. |-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455667777777666666654 556666667777777777777777666666554
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.06 E-value=74 Score=27.06 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007384 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (605)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (605)
|..+-...+.++++.++.+ +...+..+.. .++..+-...+.++.+.++
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 4444444444555554422 2222222222 3444444445555555444
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.64 E-value=1e+02 Score=28.55 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=77.9
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 007384 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (605)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 104 (605)
+...+.....-+..|++=||.+.++.+..+ +.+++++++|++++... ...+.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~~~~~~eAidlL~~g-----------a~~ll~ 65 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVRSKSYEHAIELISQG-----------ALSFLK 65 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHHhcCHHHHHHHHHHH-----------HHHHHH
Confidence 455555666667788888887777755432 33445677777664431 223455
Q ss_pred CCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHH
Q 007384 105 SKDSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMV----NAG--IEPNVHTYGALIDGCA 173 (605)
Q Consensus 105 ~~~~~~A~~~----~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~ 173 (605)
.|+...|-++ .+-..+.+++++......++..+.....-+ .=.++.+.++ +.| -.-++.....+...|.
T Consensus 66 ~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 66 AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 6666655554 445556678888888888887776644222 1223333333 222 1235566677777777
Q ss_pred hcCCHHHHHHHH
Q 007384 174 KAGQVAKAFGAY 185 (605)
Q Consensus 174 ~~g~~~~A~~~~ 185 (605)
+.|++.+|...|
T Consensus 146 ~e~~~~~A~~H~ 157 (312)
T 2wpv_A 146 EGDFVYEAERYF 157 (312)
T ss_dssp HTTCHHHHHHHH
T ss_pred hcCCHHHHHHHH
Confidence 777777766655
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.94 E-value=83 Score=26.69 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=76.1
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 007384 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (605)
Q Consensus 85 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 164 (605)
+.+.+++...-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 128 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFV 128 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHH
Confidence 33445666666666777777776443 333333332 567777778888888888754 4444444443 567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007384 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (605)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (605)
-...+.++.+.|..+ +...+..+.. .++..+-...+.++.+.+. .++...+..+..
T Consensus 129 r~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 129 RIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 777777777777643 4444444443 3455666666666666665 344444444443
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=57.85 E-value=1.2e+02 Score=28.29 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=76.6
Q ss_pred chhhhHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHH
Q 007384 24 DVSEQLHSYNRLIRQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (605)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 100 (605)
.+...+.-+..-+..|++ =||.+.++.+..+ +.+.+++++|++++-.. ..
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R----------------y~~~k~y~eAidLL~~G-----------A~ 63 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAAR----------------YSKQGNWAAAVDILASV-----------SQ 63 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHH----------------HHhhcCHHHHHHHHHHH-----------HH
Confidence 445556666677788888 6777776654432 34456677777764331 22
Q ss_pred HHHhCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHH
Q 007384 101 VCASSKDSEGAFQVL----RLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMVN----AG--IEPNVHTYGALI 169 (605)
Q Consensus 101 ~~~~~~~~~~A~~~~----~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~----~g--~~~~~~~~~~li 169 (605)
.+.+.|+...|-++. +-+.+.++++|......|+..+.....-+ .=.++.+++++ .| -.-|......+.
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 345566666555444 55556788888888777887776655322 11222222221 11 122445555566
Q ss_pred HHHHhcCCHHHHHHHH
Q 007384 170 DGCAKAGQVAKAFGAY 185 (605)
Q Consensus 170 ~~~~~~g~~~~A~~~~ 185 (605)
..|.+.+++.+|..-|
T Consensus 144 ~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHccCCHHHHHHHH
Confidence 6666666666665554
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.87 E-value=1.2e+02 Score=27.28 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=22.8
Q ss_pred hccCCHHHHHHHHHHHhhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007384 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (605)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (605)
.+.|+++++++....-.+. -+.|...-..++..+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444443332 133344444444444455555555444444443
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.60 E-value=1e+02 Score=26.33 Aligned_cols=55 Identities=5% Similarity=0.064 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 007384 106 KDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (605)
+...++.++|..|...|+--. ..-|......+...|++.+|.++|..-++.+..|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345677777777777665443 4556666777777777777777777777766555
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=53.88 E-value=2e+02 Score=29.62 Aligned_cols=367 Identities=8% Similarity=0.004 Sum_probs=180.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC-CC-hhhHHHHHHHHHhCCChHHH
Q 007384 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PT-LSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 34 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~A 111 (605)
..++.|++..+.++...+.. + |....+-...+..-.......+...+++.-+. |- ...-+.-+..+.+.+++...
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~-~--pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKD-Y--PLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTT-S--TTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhhcC-C--CcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 34577888777776665532 2 22222111111111111124455555555432 11 11223334456666676665
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHH
Q 007384 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMR 189 (605)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~ 189 (605)
+..+.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.+.|.. +....-++.+.
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al 165 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAM 165 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 554332 24455555666667777777766766666655544 33444566666666655543 22333333333
Q ss_pred hCC-----------CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHH---HHHHHHHHHhcCChHHHH
Q 007384 190 SKN-----------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT---IGALMKACANAGQVDRAR 254 (605)
Q Consensus 190 ~~g-----------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~A~ 254 (605)
..| ++++... ...++....+-..+ ...... ..++... +...+.-..+ .+.+.|.
T Consensus 166 ~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~-------~~~~~~~~~~~~~~~~rlar-~d~~~A~ 234 (618)
T 1qsa_A 166 KAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFART-------TGATDFTRQMAAVAFASVAR-QDAENAR 234 (618)
T ss_dssp HTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHH-------SCCCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred HCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhc-------cCCChhhHHHHHHHHHHHHh-cCHHHHH
Confidence 333 1111111 11111111111111 111111 1222221 1112223333 3788999
Q ss_pred HHHHHHHhcCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007384 255 EVYKMIHKYNIKGTPEV----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (605)
..+....+.. ..+... +..+...+...+...++...+....... ++.....-.+....+.|+++.|...|..|
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l 311 (618)
T 1qsa_A 235 LMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARL 311 (618)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9998886654 233333 2333334444553556666666655443 23333444444455779999999999887
Q ss_pred HHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC---
Q 007384 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--- 407 (605)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 407 (605)
.... ........-+..++.+.|+.++|..+|..+.+ +. +|-.++.+ .+.|..-.. ....+.+
T Consensus 312 ~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~~-------~~~~~~~~~~ 376 (618)
T 1qsa_A 312 PMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYEL-------KIDKAPQNVD 376 (618)
T ss_dssp CTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCCC-------CCCCCCSCCC
T ss_pred cccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCCC-------CCCCCChhHH
Confidence 6542 12344344566788889999999999999984 22 23333322 223321100 0000111
Q ss_pred CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007384 408 NTI---TYSILLVACERKDDVEVGLMLLSQAKED 438 (605)
Q Consensus 408 ~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 438 (605)
... .-..-+..+...|....|...+..+.+.
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 011 1122345577889999999988887763
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.06 E-value=20 Score=29.09 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=35.1
Q ss_pred HHHHHhhC-----CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 007384 80 AFRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (605)
Q Consensus 80 A~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 128 (605)
+..+|..+ ...-...|......+-..|++.+|.++|+.-++.+..|-..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 45555443 34455667777777888899999999999888888777443
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=48.02 E-value=1.2e+02 Score=25.33 Aligned_cols=81 Identities=7% Similarity=0.061 Sum_probs=34.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007384 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (605)
Q Consensus 89 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (605)
.+|...-...+..+.+.+.......+.+.+ . .++..+-...+.++++.+..+. ...+..+.. .++..+-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHH
Confidence 344444444444444444432222222222 1 3344444445555555554322 222222222 3455555555
Q ss_pred HHHHHhcCC
Q 007384 169 IDGCAKAGQ 177 (605)
Q Consensus 169 i~~~~~~g~ 177 (605)
+.++.+.++
T Consensus 97 ~~aL~~~~~ 105 (201)
T 3ltj_A 97 AVALGQIGD 105 (201)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCc
Confidence 555555554
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.97 E-value=1.8e+02 Score=27.11 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY----GIMRSKNVKPDRVVFNALIT 205 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~li~ 205 (605)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++- +-+.+.++++|..+...|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3345555777888888887765432 1234445554443333 34444566666665555555
Q ss_pred HHhcc
Q 007384 206 ACGQS 210 (605)
Q Consensus 206 ~~~~~ 210 (605)
.+...
T Consensus 103 L~~~~ 107 (336)
T 3lpz_A 103 CLRLF 107 (336)
T ss_dssp HHTTS
T ss_pred HHHhC
Confidence 54443
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.83 E-value=37 Score=27.99 Aligned_cols=40 Identities=3% Similarity=-0.126 Sum_probs=28.9
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 007384 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (605)
Q Consensus 89 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 128 (605)
..-...|......+-..|++.+|.++|+.-++.+..|-..
T Consensus 93 ~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 93 VSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4455566666677777888888888888888877777544
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.88 E-value=1.6e+02 Score=25.91 Aligned_cols=27 Identities=11% Similarity=-0.122 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007384 269 PEVYTIAINCCSQTGDWEFACSVYDDM 295 (605)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~~~~~m 295 (605)
.......+..+.+.|+.++|.++|-+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 444445555666666666666666443
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.34 E-value=29 Score=30.23 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 007384 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125 (605)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~ 125 (605)
..|......+-..|++.+|..+|+.-++.+..|
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444455555555555555555554444
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.46 E-value=57 Score=28.32 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=9.5
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 007384 137 CAKSGKVDAMFEVFHEMVNAG 157 (605)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g 157 (605)
.++.|+.+....+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344455544444444444433
No 280
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.58 E-value=2.1e+02 Score=24.37 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHCC
Q 007384 283 GDWEFACSVYDDMTKKG 299 (605)
Q Consensus 283 g~~~~A~~~~~~m~~~~ 299 (605)
.+.+.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44555555555555555
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.55 E-value=2.7e+02 Score=25.70 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHH
Q 007384 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG----AYGIMRSKNVKPDRVVFNALIT 205 (605)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~~~~~li~ 205 (605)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +.+-..+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344445666677777776654432 12334455444433 2344444566666666655555
Q ss_pred HHhccCCHH-HHHHHHHHH----hhCcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007384 206 ACGQSGAVD-RAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (605)
Q Consensus 206 ~~~~~g~~~-~a~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (605)
.+......+ .-.++++++ .+.+.....|......+...|.+.|++.+|+..|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 544422110 001111111 11111112355556666666667676666666553
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.32 E-value=1.9e+02 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 007384 197 RVVFNALITACGQSGAVDRAFDVLAE 222 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (605)
.......+..+.+.|+.++|.++|-+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 33444444555555555555555533
No 283
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.66 E-value=2.1e+02 Score=24.26 Aligned_cols=32 Identities=19% Similarity=-0.061 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 313 (605)
..+.+.|+-.+-+|++.|-.|....-..++.+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35666666666666666655443333333333
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.58 E-value=3.1e+02 Score=25.87 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (605)
.+.++.-|...|+.++|.+.++++....+. .......+..+.-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456777788888888888888887531111 13334455555555433 35567777777777666555554444443
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.17 E-value=1.9e+02 Score=23.32 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 007384 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (605)
Q Consensus 110 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (605)
++.++|..|...|+-.. ..-|......+...|++.+|.++|..-++.+..|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36666666666655432 4455566666666677777777776666665555
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.36 E-value=74 Score=28.34 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=12.7
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC
Q 007384 386 DGDQLPKTMEVLSDMKSLGLCPN 408 (605)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~ 408 (605)
..+......++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34454444556666666665554
No 287
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.95 E-value=60 Score=31.61 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=8.0
Q ss_pred HHHhcCCHHHHHHHHH
Q 007384 171 GCAKAGQVAKAFGAYG 186 (605)
Q Consensus 171 ~~~~~g~~~~A~~~~~ 186 (605)
..+..|+.+-+..+++
T Consensus 119 ~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 119 IAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3445566555544443
No 288
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=29.92 E-value=2.3e+02 Score=23.20 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 007384 377 MNALITALCDGDQLPKTMEVLSDMK 401 (605)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~ 401 (605)
...++.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456777777888888888888765
No 289
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.70 E-value=1.6e+02 Score=21.23 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 007384 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (605)
Q Consensus 44 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 111 (605)
...+++.+...+++.... .-.. -......++|.++++.++......|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~I----~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEKV----RNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHHH----HTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHHH----HcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 345777888877654322 1111 12245678888888888888888888888888777654443
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.10 E-value=41 Score=30.17 Aligned_cols=24 Identities=0% Similarity=-0.186 Sum_probs=12.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 007384 350 SNAKNWQKALELYEHMKSIKLKPT 373 (605)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~ 373 (605)
+..++.....++.+.+.+.|..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHccccchHHHHHHHHHHcCCCCC
Confidence 344554444555555666555443
No 291
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.04 E-value=2.9e+02 Score=23.71 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007384 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (605)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (605)
..+.+.|+-.+-+|++.|-.|....-..++.+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356666666666666666554433333333333
No 292
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.60 E-value=4.5e+02 Score=25.84 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007384 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (605)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (605)
.+.+-|.++. .+.|++--...|..-.+.+...|++++|-++-.... .|+-.+..|.+.+-..=...|+..--+..|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4555554443 345666666667777777888888888877766544 344556666666555444556666677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007384 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (605)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (605)
..+.+.| ..+..---.+++.-...|+.+-..+.+.+
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 7777766 55554444566666666776666665544
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.33 E-value=2.4e+02 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007384 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (605)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (605)
+++.++|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 577789999988876654 5567788888889999999999999998887777543
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.84 E-value=2e+02 Score=22.45 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=28.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 260 IHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
+.+.|++.+. .-..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444544442 2333444444444 45556666666666555555555444444444444
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.79 E-value=4.1e+02 Score=25.07 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHh
Q 007384 199 VFNALITACGQSGAVDRAFDVLAEMN 224 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (605)
....+|.-|...++.++|.+.++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34567777778888888888887764
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.77 E-value=2e+02 Score=22.74 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=19.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333333444445555555554444444444444444443333
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.00 E-value=2.7e+02 Score=22.77 Aligned_cols=51 Identities=12% Similarity=0.280 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 007384 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (605)
Q Consensus 111 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (605)
+..+|..|...|+-.. ...|......+...|++.+|.++|..-++.+..|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666554332 44455555666666666666666666666555553
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.78 E-value=1.5e+02 Score=25.46 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=4.8
Q ss_pred HHHHHCCCCCC
Q 007384 433 SQAKEDGVIPN 443 (605)
Q Consensus 433 ~~~~~~g~~p~ 443 (605)
+.+.+.|..++
T Consensus 200 ~~Ll~~ga~~~ 210 (241)
T 1k1a_A 200 RTLVRSGADSS 210 (241)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHhcCCCCC
Confidence 33344454444
No 299
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.16 E-value=72 Score=20.93 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=29.5
Q ss_pred hHHHHhCCChhhhhccccccccccccCchhHHHHHHHHHHhCCCCCcccc
Q 007384 523 RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF 572 (605)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~~ 572 (605)
.+...-|+.++-.. -|+ ..-||..++|...|.+....|-+|...+
T Consensus 13 ~~s~~Tgmn~~~s~----~cL-~~~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 13 AFSTQSGMNLEWSQ----KCL-QDNNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp HHHHHHCCCHHHHH----HHH-HHTTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred HHHHHHCCCHHHHH----HHH-HHcCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 34444556554221 123 3347888999999999888888887655
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.63 E-value=1e+02 Score=28.52 Aligned_cols=233 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007384 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (605)
Q Consensus 96 ~~ll~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (605)
..++.-|...|+.++|...++++......|..+....-...=.+...-+.+-.++..+.. ++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCcCCCCCCHHHHH---------
Q 007384 176 GQ--------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG--------- 238 (605)
Q Consensus 176 g~--------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--------- 238 (605)
.+ ++..-.++.++...++-|-.......-..-...|. ++...-+.+....++...-...|.
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~--~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR--AALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHH--HHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHH--HHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred -------HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH--HHHHHHHHHHHHCCCCCCHHHHHH
Q 007384 239 -------ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--EFACSVYDDMTKKGVIPDEVFLSA 309 (605)
Q Consensus 239 -------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~ 309 (605)
.++.-|...|+.++|.+.++.+.... -....+..++..++-+.++. +...+++..+...|+.+.......
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_pred HHHHHHhcCCHH----HHHHHHHHHHH
Q 007384 310 LIDFAGHAGKVE----AAFEILQEAKN 332 (605)
Q Consensus 310 li~~~~~~g~~~----~a~~~~~~~~~ 332 (605)
+...+....+.. .|..++..+..
T Consensus 243 f~~vl~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 243 YERIYNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHhccHhhcccccHHHHHHHHHH
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.00 E-value=1.3e+02 Score=22.07 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhh--hHHHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 007384 46 DLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (605)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 114 (605)
.+++.+.+.+++.... .-. +-.. ....+.|.++++.++......|..++.++...|+..-|..+
T Consensus 25 ~vld~L~~~~vlt~~~-~e~----I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHM-IED----IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSSCHHH-HHH----HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHH-HHH----HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 3677777777653221 111 1112 14678888899988888888888888888776766555443
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.70 E-value=2.1e+02 Score=22.89 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
.....+-+.+.+.|++.+ ..-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 9 ~~~~~~~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 303
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.67 E-value=2.2e+02 Score=22.72 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=26.8
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 260 IHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
+.+.|++.+. .-..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444432 2233344444443 44455566666655554445554444444444444
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.31 E-value=1.8e+02 Score=23.05 Aligned_cols=57 Identities=7% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007384 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (605)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (605)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444422 223333333334 4455556666555554445444444444444433
No 305
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.18 E-value=2.5e+02 Score=23.23 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=14.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 007384 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (605)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (605)
.+...+..|+.+.-.++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444455555444555555566555444
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.10 E-value=73 Score=26.61 Aligned_cols=15 Identities=7% Similarity=0.095 Sum_probs=8.3
Q ss_pred HHHHHHHHhCCCCCC
Q 007384 394 MEVLSDMKSLGLCPN 408 (605)
Q Consensus 394 ~~~~~~m~~~g~~p~ 408 (605)
.++.+.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555566665554
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.00 E-value=5.3e+02 Score=28.24 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 007384 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAG 176 (605)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 176 (605)
.-|..++..+-+.+.++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46788899999999999988888887764212232 35777777776554
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.56 E-value=63 Score=28.58 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=25.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHH--ccCCHHHHHHHHHHH
Q 007384 243 ACANAGQVDRAREVYKMIHKYNIKGTPE-------VYTIAINCCS--QTGDWEFACSVYDDM 295 (605)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~--~~g~~~~A~~~~~~m 295 (605)
..++.|+.+....+++.+.+.+...+.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455666666666666555544333311 2233333321 456666555555543
No 309
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.72 E-value=2.8e+02 Score=22.94 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=7.8
Q ss_pred HHHHHHHHh-CCCCCC
Q 007384 394 MEVLSDMKS-LGLCPN 408 (605)
Q Consensus 394 ~~~~~~m~~-~g~~p~ 408 (605)
..+++.+.+ .|..++
T Consensus 133 ~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 133 IPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HHHHHHHHTSTTCCTT
T ss_pred HHHHHHHHHhcCCCCc
Confidence 445555555 555554
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.21 E-value=2.4e+02 Score=20.49 Aligned_cols=14 Identities=7% Similarity=0.235 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHC
Q 007384 320 VEAAFEILQEAKNQ 333 (605)
Q Consensus 320 ~~~a~~~~~~~~~~ 333 (605)
.++|.+++..+.+.
T Consensus 53 ~~~ar~Lld~L~~r 66 (97)
T 3ygs_P 53 RDQARQLIIDLETR 66 (97)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444433
No 311
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=21.06 E-value=5.5e+02 Score=24.54 Aligned_cols=170 Identities=11% Similarity=0.004 Sum_probs=85.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhHHHHH-
Q 007384 274 IAINCCSQTGDWEFACSVYDDMTKK--GVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSL- 345 (605)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 345 (605)
.++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++.++...+...... .+.+++.+...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677778888888887777777652 11111 133455566777788888888877776543 222333332211
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHHh----CCCCC---CHHHHHHHHHHHHcCCChhHHHHHHH-HHHhCCCCCCHHHHH
Q 007384 346 ---MGACS-NAKNWQKALELYEHMKS----IKLKP---TVSTMNALITALCDGDQLPKTMEVLS-DMKSLGLCPNTITYS 413 (605)
Q Consensus 346 ---i~~~~-~~g~~~~A~~~~~~m~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~ 413 (605)
...+. ..+++..|...|-+..+ .+ .| +...|..+ .+.... ...+--.++. .....-..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL-~aLl~~-~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLL-CKIMLG-QSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH-HHHHTT-CGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHH-HHHHcC-CHHHHHHHhccccccccCCccHHHHH
Confidence 22344 67888888777665532 11 11 11223222 222222 2223222221 111111235544455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007384 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (605)
Q Consensus 414 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (605)
.++.+ .+.+++.+...+++.... .+..|.....
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~~~-~l~~D~~l~~ 293 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEYKK-ELAEDVIVQA 293 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHSTT-TTTTSHHHHH
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHH-HHhcChHHHH
Confidence 55554 445677666666655432 2555665433
No 312
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.20 E-value=5.7e+02 Score=24.42 Aligned_cols=93 Identities=9% Similarity=-0.034 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHH--H
Q 007384 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMN--A 379 (605)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~--~ 379 (605)
.++..|...|++.+|..++..+.+.--..| ..++..-+.+|...+++.++...+...... .+.+++..-. -
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 678889999999999999998876411212 344666678888999999999998877532 1223332221 1
Q ss_pred H--HHHHH-cCCChhHHHHHHHHHH
Q 007384 380 L--ITALC-DGDQLPKTMEVLSDMK 401 (605)
Q Consensus 380 l--i~~~~-~~g~~~~A~~~~~~m~ 401 (605)
. ...+. ..+++.+|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 22355 7899999998887754
Done!