Query 007385
Match_columns 605
No_of_seqs 246 out of 414
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 00:28:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nsj_A Perforin-1; pore formin 100.0 7.6E-43 2.6E-47 385.5 15.0 299 13-348 18-366 (540)
2 3ojy_B Complement component C8 100.0 1.4E-42 4.7E-47 383.3 17.0 286 14-346 117-458 (537)
3 3ojy_A Complement component C8 100.0 5.2E-42 1.8E-46 379.9 18.1 261 52-346 175-476 (554)
4 3t5o_A Complement component C6 100.0 3.2E-41 1.1E-45 392.0 14.3 295 13-346 167-509 (913)
5 2rd7_A Complement component C8 100.0 1.6E-38 5.4E-43 335.9 21.6 282 13-318 22-366 (367)
6 2qp2_A Unknown protein; toxin, 100.0 2.3E-38 7.7E-43 347.7 8.7 284 10-348 37-362 (511)
7 3kk7_A Putative cell invasion 99.3 1.5E-13 5.1E-18 148.7 -2.5 277 8-318 46-367 (541)
8 2i46_A Adrenocortical dysplasi 23.9 54 0.0018 30.4 3.4 39 543-585 24-66 (161)
9 2cq3_A RNA-binding protein 9; 19.1 2.8E+02 0.0097 22.2 6.7 55 154-215 21-80 (103)
10 4f25_A Polyadenylate-binding p 17.5 2.6E+02 0.0089 23.3 6.3 55 154-215 11-70 (115)
No 1
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=100.00 E-value=7.6e-43 Score=385.53 Aligned_cols=299 Identities=19% Similarity=0.223 Sum_probs=223.4
Q ss_pred HHHhhccceeeccc-chhh------hcccCCCCC-cceEEecC-CCceeEEcCCCeeecCCCCC-ccccccceeE-Eeec
Q 007385 13 VAIGSIGRGYDIAI-DLRL------KYCKGDLKD-SRLIEIDK-DGGREIVLPGGISIPNVSKS-IKCDKGERTR-FRSD 81 (605)
Q Consensus 13 ~ai~~lG~G~Dlt~-D~rl------~~cK~~~~~-srli~id~-~~~r~l~~Pgg~~v~~v~~~-ikCdk~~s~~-~~Sd 81 (605)
.+++.+|.|||+.. +.|- +|..+ ..| -+++. +. ....-.-+|..+. +.-.+ ++|++..+.. |.|.
T Consensus 18 Pg~~l~G~G~nilt~e~~g~~VlD~~~~~~-~~G~C~~c~-~~~~~~~~~RlP~nv~--~~~~~~~~~~~~~s~e~y~s~ 93 (540)
T 3nsj_A 18 PGVWMAGEGMDVTTLRRSGSFPVNTQRFLR-PDRTCTLCK-NSLMRDATQRLPVAIT--HWRPHSSHCQRNVAAAKVHST 93 (540)
T ss_dssp TTGGGTTCEEETTTTEECSCCSBCCCCCSC-TTSCEEEEE-ETTTTTEEEEECTTEE--EEEECCSCCCCCCEEEEECSH
T ss_pred CChHHhcCCEEEecCcccCCEeEechhccC-CCCeeeEec-ccccCCceeeccceee--eEEEEEeeeeeeechhhcccH
Confidence 46899999999987 4433 34431 002 12333 11 1223478898753 12345 8899995555 4555
Q ss_pred HhhHHHHHHhcccceecccccC-CcceeEEEEEcceeehhh--ccc------eeeeEeeEEEEEEEEEEcCCCCCCchhH
Q 007385 82 VLSFQQMSEQFNQELSLTGKIP-SGLFNAMFEFSGYWQKDA--ANT------KTLAFDGMFISLYSVALEKSQMVLRDRV 152 (605)
Q Consensus 82 v~~f~qmse~fn~~~sl~gkIp-sg~fna~f~~sGs~skdA--a~t------Ksla~dg~~I~ly~frL~~~~L~LseeF 152 (605)
+..++++++...++|+++++|| .+.++++++++|++++.+ +++ .+|..+...|++|+|+|+. +++|+++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~s~s~~~~~a~~~s~~~~~~F~~~~~~~~~~~~~~~~-~~~L~~~F 172 (540)
T 3nsj_A 94 EGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQ-KPPLHLDF 172 (540)
T ss_dssp HHHHHHHHTTBCSCTTTTSCCC-CCSTTTTCBCTTTTSHHHHHHHHHHHHSCEEEEEEEEEEEEEEEEECS-SCCBCHHH
T ss_pred HHHHHHHhhhcccccceeeecccccccceeEEeecccchhhHHHHHhhhccceEEEEEEEEEEEEEEEeCC-CCCCCHHH
Confidence 6668889999999999999998 334456677888887665 222 2377778899999999985 78999999
Q ss_pred hc---cCCCCCCh---HHHHHHHhccceEEEEceEecCE-EEE-EEee--hhcCCCCHHHHHHHHHhhcCeeEe-cc---
Q 007385 153 KK---AVPATWEP---AALASFIETYGTHIIVGVRMGGK-DVI-YVKQ--KHSSTLQPADVQKRLKEMADKRFL-DA--- 218 (605)
Q Consensus 153 ~k---~LPs~Yd~---~aYa~FIe~YGTHYItsgtLGGk-dvi-yVrq--~ksSglT~~EVk~CL~~~a~~~F~-~~--- 218 (605)
++ +||..||+ ++|++||++||||||++++|||+ +++ ++++ ++.+++|.+||++||+.++++++. ..
T Consensus 173 ~~~l~~LP~~~~~~~~~~Y~~fi~~yGTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~~ 252 (540)
T 3nsj_A 173 KKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVS 252 (540)
T ss_dssp HHHHHTSCSSCCSSTHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHhcccccCcccHHHHHHHHHhcCcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEeec
Confidence 94 79999999 99999999999999999999999 676 5565 678899999999999988866552 11
Q ss_pred -cCcccccchhhhcccchhhhhhhcccccCCCCcccccccCcEEEEEeecCCC------------CCcccHHHHHhhccC
Q 007385 219 -NGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSD------------NRNLSHNEWLHTVQF 285 (605)
Q Consensus 219 -~~~sc~k~~~~~~~~k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vRGG~~------------~~~l~yseWl~SVk~ 285 (605)
....|.+..+ +...+..| ....+| +++.||||.. +++ .|++|++||++
T Consensus 253 ~~~~~C~~~~~--------~~~~~~~~--------~~~~~~--~~~~V~GG~~~~~~~L~~~~~~~p~-~~~~W~~Sv~~ 313 (540)
T 3nsj_A 253 SEYKACEEKKK--------QHKMATSF--------HQTYRE--RHVEVLGGPLDSTHDLLFGNQATPE-QFSTWTASLPS 313 (540)
T ss_dssp HHHHHHHHHHH--------HTTCSSCH--------HHHCCC--EEEEEESSCGGGCCCSSSCSSCCHH-HHHHHHHHTTT
T ss_pred ccccccccccc--------cccccCCc--------ccccce--EEEEEeCCCccchhhhhcccCCCHH-HHHHHHHHHhh
Confidence 1233444222 11122222 333478 8899999953 445 79999999999
Q ss_pred CCCeEEeeccccccccC-CCchhhHHHHHHHHHHhcCCChhhhhhhhhhcCcc-cee-ccccCCCC
Q 007385 286 EPDVTSMSFIPITSLLN-GVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPR-QWA-PVFSELPL 348 (605)
Q Consensus 286 nPdVIs~kL~PI~eLL~-~vpkr~nLkrAIeeYL~ykp~ie~l~~flEfq~pc-~ca-Pc~n~l~l 348 (605)
+|+||+|+|.|||+||+ ..++|+|||+||++||. || +|| +|+ ||+||.+.
T Consensus 314 ~P~~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~------------e~-~~c~~C~~PC~nn~~~ 366 (540)
T 3nsj_A 314 NPGLVDYSLEPLHTLLEEQNPKREALRQAISHYIM------------SR-ARWQNCSRPCRSGQHK 366 (540)
T ss_dssp SCEEEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHH------------HT-CBCCCTTSCCBTTEEE
T ss_pred CCceEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHH------------hc-CchhhhcccccCCCcc
Confidence 99999999999999998 46799999999999995 99 999 997 99999753
No 2
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=383.31 Aligned_cols=286 Identities=16% Similarity=0.180 Sum_probs=205.8
Q ss_pred HHhhccceeeccc--------chhh--hcccCCCCCcceEEecCCCceeEEcCCCeeecCCCCCccccccceeEEeecHh
Q 007385 14 AIGSIGRGYDIAI--------DLRL--KYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVL 83 (605)
Q Consensus 14 ai~~lG~G~Dlt~--------D~rl--~~cK~~~~~srli~id~~~~r~l~~Pgg~~v~~v~~~ikCdk~~s~~~~Sdv~ 83 (605)
.++.+|.|||+.. |.+. ..|+ -+.... .+ .-+|.++.. ....++|+..++..++++..
T Consensus 117 ~~~l~G~G~dilt~~~~g~vlD~~~~~G~C~-------~~~~~~--~~-yRlP~nv~~--~~~~~~~~~~~sse~y~S~~ 184 (537)
T 3ojy_B 117 GIGSLASGINLFTNSFEGPVLDHRYYAGGCS-------PHYILN--TR-FRKPYNVES--YTPQTQGKYEFILKEYESYS 184 (537)
T ss_dssp TGGGGGEEECTTTCCEEEECBCTTCCCSCCE-------EEEETT--EE-EEECTTEEE--EEECCCCCCCEEEEEESSHH
T ss_pred cceecceeEEEecCccccceecccccCCccc-------eeecCC--cc-EECccccee--EeeeeeEeeecchhhhhcHH
Confidence 5678999999987 3333 2343 222221 23 889988642 23468999996666666655
Q ss_pred h-HHHH--HHhcccceecccccCCcceeEEEEEcceeehhh--c------cce--eeeEeeEEEEEEEEEEcCCCCCCch
Q 007385 84 S-FQQM--SEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDA--A------NTK--TLAFDGMFISLYSVALEKSQMVLRD 150 (605)
Q Consensus 84 ~-f~qm--se~fn~~~sl~gkIpsg~fna~f~~sGs~skdA--a------~tK--sla~dg~~I~ly~frL~~~~L~Lse 150 (605)
+ ++++ ...++++|+++++|+. .|++.|+++ +++.+ + .+| .|......|++|+|+|++.+++|++
T Consensus 185 ~~~~~~~~~~s~~~~~~~gl~i~~-~~~~~~~~s--~s~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~L~~ 261 (537)
T 3ojy_B 185 DFERNVTEKMASKSGFSFGFKIPG-IFELGISSQ--SDRGKHYIRRTKRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHY 261 (537)
T ss_dssp HHTTTSCC-----CCCBTTTBCCS-CEECCCTTT--SSSSHHHHHHHHTTCSCCEEEEEEEECEEEEEEEECSSSCCBCH
T ss_pred HHHHHhhhhccccccceeeeeccc-ceeEeEeec--ccchHHHHHHHHHhhccceEEEEEEEEEEEEEEEEeCCCCCCCH
Confidence 5 5555 5678999999999984 454445553 33332 1 122 2666677999999999988999999
Q ss_pred hHh---ccCCCCCChHHHHHHHhccceEEEEceEecCE-EEEEE-e--ehhcCCCCHHHHHHHHHhhcCeeEe----cc-
Q 007385 151 RVK---KAVPATWEPAALASFIETYGTHIIVGVRMGGK-DVIYV-K--QKHSSTLQPADVQKRLKEMADKRFL----DA- 218 (605)
Q Consensus 151 eF~---k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk-dviyV-r--q~ksSglT~~EVk~CL~~~a~~~F~----~~- 218 (605)
+|+ ++||..||+++|++||++||||||++++|||+ +++++ + +++.+++|.+||++||+.+++++|. ..
T Consensus 262 ~F~~~l~~LP~~y~~~~y~~fi~~yGTH~i~s~~lGG~~~~i~~~~~~~~~~s~~t~~evk~Cl~~~~~~~~~i~~~~~~ 341 (537)
T 3ojy_B 262 EFLQRVKRLPLEYSYGEYRDLFRDFGTHYITEAVLGGIYEYTLVMNKEAMERGDYTLNNVHACAKNDFKIGGAIEEVYVS 341 (537)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHHCSEEEEEEEEEECCEEEEEEEHHHHTTTTCCHHHHHHHTTTC-------------
T ss_pred HHHHHHHhcccccCHHHHHHHHHhcCcEEEEeEeeccEEEEEEEEehHhHhhcCCCHHHHHHHHhcccceeEEeeeeeee
Confidence 999 56899999999999999999999999999999 88875 4 5788999999999999998885552 11
Q ss_pred ---cCcccccchhhhcccchhhhhhhcccccCCCCcccccccCcEEEEEeecCCC------------CCcccHHHHHhhc
Q 007385 219 ---NGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSD------------NRNLSHNEWLHTV 283 (605)
Q Consensus 219 ---~~~sc~k~~~~~~~~k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vRGG~~------------~~~l~yseWl~SV 283 (605)
....|.+..+. ...+..| ....+| +++.||||.. +++ .|++|++||
T Consensus 342 ~~~~~~~C~~~~~~--------~~~~~~~--------~~~~~~--~~~~V~GG~~~~~~~L~~~~~~~~~-~~~~W~~Sv 402 (537)
T 3ojy_B 342 LGVSVGKCRGILNE--------IKDRNKR--------DTMVED--LVVLVRGGASEHITTLAYQELPTAD-LMQEWGDAV 402 (537)
T ss_dssp ---CCSCCTTTTTH--------HHHTTTS--------SCSEEE--EEEECCSCCSTTCCCCCTSSSCCCS-CHHHHHHHH
T ss_pred cccccccccccccc--------ccccccc--------ccccee--EEEEEeCCCcccchhhhcccCCCHH-HHHHHHHHh
Confidence 22345542221 1111222 112357 8999999964 456 899999999
Q ss_pred cCCCCeEEeeccccccccC--CCc----hhhHHHHHHHHHHhcCCChhhhhhhhhhcCccceeccccCC
Q 007385 284 QFEPDVTSMSFIPITSLLN--GVP----GSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSEL 346 (605)
Q Consensus 284 k~nPdVIs~kL~PI~eLL~--~vp----kr~nLkrAIeeYL~ykp~ie~l~~flEfq~pc~caPc~n~l 346 (605)
+++|+||+|+|.|||+||+ ++| +|+||++||++||. || +||+|+||+|++
T Consensus 403 ~~~P~vI~~~l~PI~eLv~~~~ip~~~~kr~nL~~Ai~~Yl~------------e~-~~c~C~pC~~~~ 458 (537)
T 3ojy_B 403 QYNPAIIKVKVEPLYELVTATDFAYSSTVRQNMKQALEEFQK------------EV-SSCHCAPCQGNG 458 (537)
T ss_dssp HTSCEEEEEEEEEGGGGCCTTTCTTHHHHHHHHHHHHHHHHH------------HT-CGGGSCCCSTTC
T ss_pred hcCCceEEEEeEeHHHhcCcccCCchHHHHHHHHHHHHHHHH------------Hh-CcccCCCCCcCC
Confidence 9999999999999999994 454 67999999999995 88 999999999995
No 3
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.2e-42 Score=379.88 Aligned_cols=261 Identities=20% Similarity=0.262 Sum_probs=179.0
Q ss_pred eEEcCCCeeecCCCCCccccccceeEEeec-HhhHHHHHHhcccceecccccCCcceeEEEEEcceeehhhc--c-----
Q 007385 52 EIVLPGGISIPNVSKSIKCDKGERTRFRSD-VLSFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAA--N----- 123 (605)
Q Consensus 52 ~l~~Pgg~~v~~v~~~ikCdk~~s~~~~Sd-v~~f~qmse~fn~~~sl~gkIpsg~fna~f~~sGs~skdAa--~----- 123 (605)
-.-+|..+. +...+++|++.++..++++ +..++++++...++|++++.|+....++.|++++++++.+. +
T Consensus 175 ~~RlP~nv~--~~~~~~~~~~~~s~e~y~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~ 252 (554)
T 3ojy_A 175 YFRKPYNFL--KYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKY 252 (554)
T ss_dssp EEEECTTEE--EEEECCCCCCCCEEEEESSHHHHHHHHC--------------------------------CTTGGGTTC
T ss_pred eEEccceee--EEeEEEEEeeecchhhhhcHHHHHHHHHhhhccccceeeecccccceeEEEeeccccchhHHHHHHHhh
Confidence 366776643 2335689999966555555 66688888889999998888763222445555665555441 1
Q ss_pred ---ceeeeEeeEEEEEEEEEEcCCCCCCchhHh---ccCCCCCChHHHHHHHhccceEEEEceEecCE-EEEEE-e--eh
Q 007385 124 ---TKTLAFDGMFISLYSVALEKSQMVLRDRVK---KAVPATWEPAALASFIETYGTHIIVGVRMGGK-DVIYV-K--QK 193 (605)
Q Consensus 124 ---tKsla~dg~~I~ly~frL~~~~L~LseeF~---k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk-dviyV-r--q~ 193 (605)
..+|......|++|+|+|++++|+|+++|+ ++||..||+++|++||++||||||++++|||+ +++++ + ++
T Consensus 253 ~~k~~~F~~~~~~~~~~~f~l~~~~l~L~~~F~~~l~~LP~~y~~~~y~~fi~~yGTHyi~s~~lGG~~~~i~~l~~~~~ 332 (554)
T 3ojy_A 253 NEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKM 332 (554)
T ss_dssp CSTTEEEEEEEEEEEEEEEEECSSSBCBCHHHHHHHHTCCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHH
T ss_pred cccceEEEEEEEEEEEEEEEEeCCCCCCCHHHHHHHHhCCccCCHHHHHHHHHhcCcEEEEeeeeCcEEEEEEEEehhhh
Confidence 123777778999999999999999999999 46899999999999999999999999999999 88875 5 57
Q ss_pred hcCCCCHHHHHHHHHhhcCeeEe---cc----cCcccccchhhhcccchhhhhhhcccccCCCCcccccccCcEEEEEee
Q 007385 194 HSSTLQPADVQKRLKEMADKRFL---DA----NGQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRR 266 (605)
Q Consensus 194 ksSglT~~EVk~CL~~~a~~~F~---~~----~~~sc~k~~~~~~~~k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vR 266 (605)
+.+|+|.+||++||+.+++++|. .. ....|.+..+.. ..+..|+ ...+| +++.||
T Consensus 333 ~~sglt~~dvk~Cl~~e~~~~~~~~~~~~~~~~~~~C~~~~~~~--------~~~~~~~--------~~~~~--~~~~V~ 394 (554)
T 3ojy_A 333 ESLGITSRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGK--------TERARKA--------MAVED--IISRVR 394 (554)
T ss_dssp HHTTCCHHHHHHHHHHTTTCCC-------------CCTTTTTTC--------SHHHHHH--------TTEEE--EEECCB
T ss_pred hhcCCCHHHHHHHHhhcccEEEeeeeeeeccccccccccccccc--------ccccccc--------cccce--EEEEEE
Confidence 88999999999999999988762 22 223455532211 1111221 12356 889999
Q ss_pred cCCC----------CCcccHHHHHhhccCCCCeEEeeccccccccC--CC----chhhHHHHHHHHHHhcCCChhhhhhh
Q 007385 267 GGSD----------NRNLSHNEWLHTVQFEPDVTSMSFIPITSLLN--GV----PGSGFLSHAINLYLRYKPPIEELHQF 330 (605)
Q Consensus 267 GG~~----------~~~l~yseWl~SVk~nPdVIs~kL~PI~eLL~--~v----pkr~nLkrAIeeYL~ykp~ie~l~~f 330 (605)
||.. +++ .|++|++||+++|+||+|+|.|||+||+ ++ ++|+||++||++||.
T Consensus 395 GG~~~~~~~L~~~~~~~-~~~~W~~Sv~~~P~vI~~~l~PI~~Lv~~~~~p~~~~kr~nL~~Ai~~Yl~----------- 462 (554)
T 3ojy_A 395 GGSSGWSGGLAQNRSTI-TYRSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM----------- 462 (554)
T ss_dssp SCC----------CCCC-CHHHHHHHGGGSCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHH-----------
T ss_pred CCCccccchhhcccCHH-HHHHHHHHHhcCCceEEEEeEeHHHhcCcccCCccHHHHHHHHHHHHHHHh-----------
Confidence 9964 467 8999999999999999999999999998 44 478999999999995
Q ss_pred hhhcCccceeccccCC
Q 007385 331 LEFQLPRQWAPVFSEL 346 (605)
Q Consensus 331 lEfq~pc~caPc~n~l 346 (605)
|| .||+|+||+|+.
T Consensus 463 -e~-~~c~c~pC~~~g 476 (554)
T 3ojy_A 463 -EF-NACRCGPCFNNG 476 (554)
T ss_dssp -HT-CGGGSCCCTTTC
T ss_pred -hc-ccccccccCCCC
Confidence 88 999999999887
No 4
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=100.00 E-value=3.2e-41 Score=392.03 Aligned_cols=295 Identities=17% Similarity=0.276 Sum_probs=208.8
Q ss_pred HHHhhccceeecccchh------hhcccCCCCCcceEEecCCCceeEEcCCCeeecCCCCCccccc-cceeEEeecHhh-
Q 007385 13 VAIGSIGRGYDIAIDLR------LKYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDK-GERTRFRSDVLS- 84 (605)
Q Consensus 13 ~ai~~lG~G~Dlt~D~r------l~~cK~~~~~srli~id~~~~r~l~~Pgg~~v~~v~~~ikCdk-~~s~~~~Sdv~~- 84 (605)
.+++.+|.|||+...-+ .+|..| .-+++. |.+...-+-+|.++..- ...++|++ ..++.++++..+
T Consensus 167 Pg~~l~G~G~dilt~~~~g~vlD~~~~~g---~C~~~~-~~~~~~~yr~P~nv~~~--~~~~~~~~~~~sse~y~S~~~~ 240 (913)
T 3t5o_A 167 PSVQLMGNGFHFLAGEPRGEVLDNSFTGG---ICKTVK-SSRTSNPYRVPANLENV--GFEVQTAEDDLKTDFYKDLTSL 240 (913)
T ss_dssp TTGGGGGEEEETTTTEEEEECBCSSCCCS---CCCEEC-CTTSSSCEECCTTEEEE--ECCCCCCGGGEEEEEESCGGGG
T ss_pred chhhhhcCcEEeecCccccccccccccCC---eeeEEE-CCCCCceEecccceeeE--EEEEEEEecceeHhhhhhHHHH
Confidence 47889999999876221 122221 123443 22333458889886432 34578988 666666655555
Q ss_pred HHHHH--HhcccceecccccCCcceeEEEEEcceeehhhc------c--ceeeeEeeEEEEEEEEEEcCCCCCCchhHh-
Q 007385 85 FQQMS--EQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAA------N--TKTLAFDGMFISLYSVALEKSQMVLRDRVK- 153 (605)
Q Consensus 85 f~qms--e~fn~~~sl~gkIpsg~fna~f~~sGs~skdAa------~--tKsla~dg~~I~ly~frL~~~~L~LseeF~- 153 (605)
+++++ ..++.+|+++++|| +.|+++++++|++++.+. . ...|......|++|+|+|++++++|+++|+
T Consensus 241 ~~~~~~~~s~s~~~~~~~~i~-~~~s~~~~~~~s~s~~~~~~~~~s~~~~~~f~~~~~~~~~~~~~l~~~~l~L~~~F~~ 319 (913)
T 3t5o_A 241 GHNENQQGSFSSQGGSSFSVP-IFYSSKRSENINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLK 319 (913)
T ss_dssp GC-----------------CC-CCCCTTTCCCCCCTTHHHHHHHHHHTSSEEEEEEEEEEEEEEEEECSSSCCBCHHHHH
T ss_pred HHhhhhcceeecccceeeccc-cceeeeeEeeccchHHHHHHHHhhhccceEEEEEEEEEEEEEEEecCCCCCcCHHHHH
Confidence 55555 57888898999887 346666777777765552 1 233777778999999999998999999999
Q ss_pred --ccCCCCCChHHHHHHHhccceEEEEceEecCE-EEEEE-e--ehhcCCCCHHHHHHHHHhhcCeeEecccC----ccc
Q 007385 154 --KAVPATWEPAALASFIETYGTHIIVGVRMGGK-DVIYV-K--QKHSSTLQPADVQKRLKEMADKRFLDANG----QYS 223 (605)
Q Consensus 154 --k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk-dviyV-r--q~ksSglT~~EVk~CL~~~a~~~F~~~~~----~sc 223 (605)
++||..||+++|++||++||||||++++|||+ +++++ + +++.++++.+||++||+.+++++|...+. ..|
T Consensus 320 ~l~~LP~~y~~~~Y~~fi~~yGTHyits~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~cl~~~~~~~~~~~~~~~~~~~c 399 (913)
T 3t5o_A 320 ALNHLPLEYNSALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKTKVEHRC 399 (913)
T ss_dssp HTTSSCSSCCHHHHHHHHHHHCSEECSEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHHHHHHHHTSCCCCCCCCGGG
T ss_pred HHHhCccccCHHHHHHHHHhcCcEEEEeEEeccEEEEEEEEchhhHhhcCCCHHHHHHhhheecceEEEEEeeccccCcc
Confidence 57899999999999999999999999999999 88865 4 57788999999999999988877743322 233
Q ss_pred ccchhhhcccchhhhhhhcccccCCCCcccccccCcEEEEEeecCCC---------------CCcccHHHHHhhccCCCC
Q 007385 224 LSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSD---------------NRNLSHNEWLHTVQFEPD 288 (605)
Q Consensus 224 ~k~~~~~~~~k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vRGG~~---------------~~~l~yseWl~SVk~nPd 288 (605)
.+.. .+.....+| ....++ +++.|+||.. +.+ .|++|++||+++|+
T Consensus 400 ~~~~--------~~~~~~~s~--------~~~~~~--~~~~v~GG~~~~~~~L~~~~~~~~~~~~-~~~~W~~Sv~~~P~ 460 (913)
T 3t5o_A 400 TTNK--------LSEKHEGSF--------IQGAEK--SISLIRGGRSEYGAALAWEKGSSGLEEK-TFSEWLESVKENPA 460 (913)
T ss_dssp TSST--------TGGGGTTCS--------GGGSSE--EEECCBSSCHHHHHHHSCCTTSSSSSHH-HHHHHHHHHHHSCE
T ss_pred cCCC--------ccccccccc--------cccccc--ceEEEeCCCcchhhhhhhhccCCCCCHH-HHHHHHHHHhhCCc
Confidence 3311 111222222 223367 8888999963 346 89999999999999
Q ss_pred eEEeeccccccccCCC----chhhHHHHHHHHHHhcCCChhhhhhhhhhcCccceeccccCC
Q 007385 289 VTSMSFIPITSLLNGV----PGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSEL 346 (605)
Q Consensus 289 VIs~kL~PI~eLL~~v----pkr~nLkrAIeeYL~ykp~ie~l~~flEfq~pc~caPc~n~l 346 (605)
||+|+|.|||+||+++ ++|+||++||++||. || ++|+|+||+||.
T Consensus 461 ~I~~~l~PI~eLv~~~~~~~~kr~~Lk~Ai~~Yl~------------e~-~~c~C~PC~ngg 509 (913)
T 3t5o_A 461 VIDFELAPIVDLVRNIPCAVTKRNNLRKALQEYAA------------KF-DPCQCAPCPNNG 509 (913)
T ss_dssp EEEEECCBGGGGCCSSTTHHHHHHHHHHHHHHHHH------------TT-CGGGSCCBTTTB
T ss_pred eeeeeeccHHHHhhccCchHHHHHHHHHHHHhhcc------------cc-ccccCCCCCCCC
Confidence 9999999999999987 578999999999995 88 999999999986
No 5
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=100.00 E-value=1.6e-38 Score=335.88 Aligned_cols=282 Identities=18% Similarity=0.246 Sum_probs=200.3
Q ss_pred HHHhhccceeeccc-chh-----hhcccCCCCCcceEEecCCC----------------ceeEEcCCCeeecCCCCCccc
Q 007385 13 VAIGSIGRGYDIAI-DLR-----LKYCKGDLKDSRLIEIDKDG----------------GREIVLPGGISIPNVSKSIKC 70 (605)
Q Consensus 13 ~ai~~lG~G~Dlt~-D~r-----l~~cK~~~~~srli~id~~~----------------~r~l~~Pgg~~v~~v~~~ikC 70 (605)
.+++.+|.|||+.. +.+ ..|+-| ..+++.+.+-. ..-..+|.++.. .-...+|
T Consensus 22 Pg~~~~g~G~dilt~~~~g~v~D~~~~~g---~C~~~~~~~~~~~~~d~~~~~~~~~~~~~~yr~P~nv~~--~~~~~~~ 96 (367)
T 2rd7_A 22 PGSQKAALGYNILTQEDAQSVYDASYYGG---QCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLK--YHFEALA 96 (367)
T ss_dssp TTHHHHTEEEETTTTEEEEESBCTTCCTT---CCCEEEECSSCCEEEETTTTEEEECSCCEEEECCTTEEE--EEECCCC
T ss_pred CChHHHCCceeeecCCccCccccCCccCC---EEEEEecCccccccccccccchhhcccccceecChhhee--eeEEEEE
Confidence 46889999999987 111 123321 12334322110 022889998642 2245899
Q ss_pred cccceeEEeecHhh-HHHHHHhcccceecccccCCcceeEEEEEcceeehhhc----------cceeeeEeeEEEEEEEE
Q 007385 71 DKGERTRFRSDVLS-FQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAA----------NTKTLAFDGMFISLYSV 139 (605)
Q Consensus 71 dk~~s~~~~Sdv~~-f~qmse~fn~~~sl~gkIpsg~fna~f~~sGs~skdAa----------~tKsla~dg~~I~ly~f 139 (605)
+..+++.++++..+ .+++++..+.+|+++..+..+...+.++++|++++.+. .+.+|......|++|+|
T Consensus 97 ~~~~s~~~y~S~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~s~S~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~ 176 (367)
T 2rd7_A 97 DTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHF 176 (367)
T ss_dssp CCCCEEEEESSHHHHHHHHHHHTTSSEEEEECCC---CEEEEEESCCSSCCHHHHHHHHTTCSTTEEEEEEEEEEEEEEE
T ss_pred eeecchhheecHHHHHHHHHhhhccccccccccccccceEEEEeeecccchHHHHHHHHHhhcCCcEEEEEEEEEEEEEE
Confidence 99966655555544 67888889999988777543334556677776664431 12237767779999999
Q ss_pred EEcCCCCCCchhHh---ccCCCCCChHHHHHHHhccceEEEEceEecCE-EEEEE-e--ehhcCCCCHHHHHHHHHhhcC
Q 007385 140 ALEKSQMVLRDRVK---KAVPATWEPAALASFIETYGTHIIVGVRMGGK-DVIYV-K--QKHSSTLQPADVQKRLKEMAD 212 (605)
Q Consensus 140 rL~~~~L~LseeF~---k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk-dviyV-r--q~ksSglT~~EVk~CL~~~a~ 212 (605)
+|++..++|+++|+ ++||..||+++|++||++||||||++++|||+ +++++ + +++++++|.+|+++|++.+++
T Consensus 177 ~l~~~~~~L~~~F~~~l~~LP~~y~~~~y~~fI~~yGTHyits~~lGG~~~~i~~~~~~~~~~s~~t~~e~~~cl~~~a~ 256 (367)
T 2rd7_A 177 KMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLG 256 (367)
T ss_dssp EECSSSBCBCHHHHHHHHTSCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHHHHTT
T ss_pred EEECCCCCCCHHHHHHHHhCcccCCHHHHHHHHHHcCcEEEeccccCcEEEEEEEEehHhHhhCCCCHHHHHHHHHhhcC
Confidence 99988899999999 46799999999999999999999999999999 88875 3 467889999999999999988
Q ss_pred eeEec-----cc--CcccccchhhhcccchhhhhhhcccccCCCCcccccccCcEEEEEeecCCC----------CCccc
Q 007385 213 KRFLD-----AN--GQYSLSSEQVYQNDKFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGSD----------NRNLS 275 (605)
Q Consensus 213 ~~F~~-----~~--~~sc~k~~~~~~~~k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vRGG~~----------~~~l~ 275 (605)
++|.. .+ ...|.+..+ +.....+|. ...+| .++.+|||++ +++ .
T Consensus 257 ~~~~~~v~~~~~~~~~~c~~~~~--------~~~~~~~~~--------~~~~~--~~~~v~GG~~~~~~~L~~~~~~~-~ 317 (367)
T 2rd7_A 257 IQYEDKINVGGGLSGDHCKKFGG--------GKTERARKA--------MAVED--IISRVRGGSSGWSGGLAQNRSTI-T 317 (367)
T ss_dssp CCC------------CHHHHHTT--------CCSHHHHHH--------TTEEE--EEECCBSCCC-----------CC-C
T ss_pred eeeeccceeecccCccccccccc--------ccccccccc--------ccccc--eEEEEECCCccccchhccCCChH-H
Confidence 77721 11 122333111 111112221 11145 6778899964 336 8
Q ss_pred HHHHHhhccCCCCeEEeeccccccccC--CCch----hhHHHHHHHHHH
Q 007385 276 HNEWLHTVQFEPDVTSMSFIPITSLLN--GVPG----SGFLSHAINLYL 318 (605)
Q Consensus 276 yseWl~SVk~nPdVIs~kL~PI~eLL~--~vpk----r~nLkrAIeeYL 318 (605)
|++|++||+++|++|+|+|.|||+||+ ++|+ |+||+|||++||
T Consensus 318 ~~~W~~Sv~~~P~~I~~~l~PI~~Ll~~~~~p~~~~kk~~Lk~Ai~~Yl 366 (367)
T 2rd7_A 318 YRSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYL 366 (367)
T ss_dssp HHHHHHHHHHCCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCceEEEEEEEHHHhcCcccCCccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 7777 999999999998
No 6
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp}
Probab=100.00 E-value=2.3e-38 Score=347.74 Aligned_cols=284 Identities=15% Similarity=0.214 Sum_probs=206.0
Q ss_pred HHHHHHhhccceeecccch-hhhcccCCCCCcceEE-----ecCCCceeEEcCCCeeecCCCCCccccccceeEE----e
Q 007385 10 AAEVAIGSIGRGYDIAIDL-RLKYCKGDLKDSRLIE-----IDKDGGREIVLPGGISIPNVSKSIKCDKGERTRF----R 79 (605)
Q Consensus 10 ~~~~ai~~lG~G~Dlt~D~-rl~~cK~~~~~srli~-----id~~~~r~l~~Pgg~~v~~v~~~ikCdk~~s~~~----~ 79 (605)
+++.|+++||+|||+++|+ |+.+||+ +||+ ++++.++++++ +| ....||..+.|.....+++ +
T Consensus 37 ~~~~g~~~lG~GyDI~g~y~~~~~~k~-----~V~D~~~~~~~~~~~~~v~i-~~-~~yrvP~ni~~~~~~~~~f~s~~y 109 (511)
T 2qp2_A 37 TVIAGAEMIGTSYDVFGKYCNVGSCMN-----SLFDERKINASEDNFKKVTI-LG-KTLKVPYYIDCYSVGDLKYTNASG 109 (511)
T ss_dssp TBCTTGGGTTEEECTTSSSSCGGGEEE-----ECBCHHHHHTCGGGEEEEEE-TT-EEEEEETTCEEEEEEEEEEEEEEE
T ss_pred cchhhhHhheeeeeecccccCccccCc-----ceeechheecccCCCceEee-CC-eeecCCcceEeeeccceEEEEEEe
Confidence 4568899999999999997 9999994 8999 44667888877 66 4566888888887755555 4
Q ss_pred ecHhhHHHHHHhcccceeccc--ccCCcceeEEEEEcceeehhhccceeeeEeeEEEEEEEEEEcCCC--CCCchhHhcc
Q 007385 80 SDVLSFQQMSEQFNQELSLTG--KIPSGLFNAMFEFSGYWQKDAANTKTLAFDGMFISLYSVALEKSQ--MVLRDRVKKA 155 (605)
Q Consensus 80 Sdv~~f~qmse~fn~~~sl~g--kIpsg~fna~f~~sGs~skdAa~tKsla~dg~~I~ly~frL~~~~--L~LseeF~k~ 155 (605)
+++.+|.+ .++++.++++ ++++|+|+++|+.+ +......+|.....+|++|+|+++.+. ..|+++|+++
T Consensus 110 eS~~ey~~---~l~~~~svsgs~~~fsgs~~a~F~~s----~~~~k~~~f~~v~~~i~~y~~~~~~~~l~~~Ls~~F~k~ 182 (511)
T 2qp2_A 110 ESIESYQS---NISSKSRIKGNYLFFSASLKVDFDTD----SLTDFENAFSRIQYTYDLYILKSSAEALKEFLKESVKTA 182 (511)
T ss_dssp SSHHHHHH---HHHHTTCCSSSCCTTTTHHHHHSCTG----GGGCTTEEEEEEEEEEEEEEEECCHHHHGGGBCHHHHHH
T ss_pred cCHHHHHH---HHHHhheeeeceeeeeEEEEEEeccc----cccccceEEEEEEEEEEEEEEEeChhhhhhhcCHHHHHh
Confidence 77777766 4666777776 57788887776532 111122336666889999999998764 3899999999
Q ss_pred CCCCCChHHHHHHHhccceEEEEceEecCE-EEEEE-eehhcCCCCHHHHHHHHHhhcCeeEecccCcccccchhhhccc
Q 007385 156 VPATWEPAALASFIETYGTHIIVGVRMGGK-DVIYV-KQKHSSTLQPADVQKRLKEMADKRFLDANGQYSLSSEQVYQND 233 (605)
Q Consensus 156 LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk-dviyV-rq~ksSglT~~EVk~CL~~~a~~~F~~~~~~sc~k~~~~~~~~ 233 (605)
|+..+++.+|++||++||||||++++|||+ +++++ ++.+..+ ..+++.|++......| ..+...|.+ +.+
T Consensus 183 L~~~~~~~~y~~fI~~YGTHyits~~lGG~~~y~~s~~~~~~~~--~~~is~~a~as~~~~~-~~s~~~~~~----~~~- 254 (511)
T 2qp2_A 183 LDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNL--TNSFDVVAAASFAGFI-GLSARTGNS----FME- 254 (511)
T ss_dssp HHHCCSHHHHHHHHHHTCSEEECEEEEEEEEEEEEEEETTTSCC--SSCHHHHHHHHHHHHT-TCCCCCTTT----HHH-
T ss_pred hccccchhhHHHHHHhCCeEEEEeeecccEEEEEEeeccccccc--cceeeeEEEEEEeeee-eeccccccc----ccc-
Confidence 998899999999999999999999999999 66655 4444444 2344555443321111 112222222 111
Q ss_pred chhhhhhhcccccCCCCcccccccCcEEEEEeecCC-----C--------CC---------cccHHHHHhhccCCCCeEE
Q 007385 234 KFDIREQRLRFADTSPSSSYSYKEDMVCICKRRGGS-----D--------NR---------NLSHNEWLHTVQFEPDVTS 291 (605)
Q Consensus 234 k~~~~~~~~~f~~~~~~s~vs~~eDi~vI~~vRGG~-----~--------~~---------~l~yseWl~SVk~nPdVIs 291 (605)
...+|. ..++ ++..++||. . ++ . .|++|++||+++|+||+
T Consensus 255 ------~~~sf~---------s~~~--~~~~V~GG~~s~~d~~~~aL~~~~ps~~~~~~~~~-~y~~W~~SV~~nP~vId 316 (511)
T 2qp2_A 255 ------DIKKFR---------SASN--IKTHAIGGDLSRFDPFGGATSADQPSAEEIAAAKK-AFEDWKASVPNAPELVN 316 (511)
T ss_dssp ------HHHHHH---------HTEE--EEEEEESSCTTTCCTTTTCCCCSSCCHHHHHHHHH-HHHHHHHHSTTSCEEEE
T ss_pred ------cccccc---------ccCc--eEEEEECCCCcccccccceeccCCCcccccccchh-HHHHHHHHhhhchheEe
Confidence 000121 1135 677889997 2 11 3 69999999999999999
Q ss_pred ee----ccccccccCCCchhhHHHHHHHHHHhcCCChhhhhhhhhhcCccceeccccCCCC
Q 007385 292 MS----FIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPL 348 (605)
Q Consensus 292 ~k----L~PI~eLL~~vpkr~nLkrAIeeYL~ykp~ie~l~~flEfq~pc~caPc~n~l~l 348 (605)
|+ |.|||+||+..++|++||+||++||. | ..|+|+||+|| |.
T Consensus 317 f~~~~sL~PI~eLV~~~~Kk~~LkrAieeYl~------------e--~~~~~~~~~~n-~~ 362 (511)
T 2qp2_A 317 FADSNPLTGIWELCSDRTQKAKLKKHFETVWA------------P--AESAKRRVHAD-YI 362 (511)
T ss_dssp ECSSCCEEEGGGGCSCHHHHHHHHHHHHHTHH------------H--HHHHTTCCCCC-EE
T ss_pred ecCCccceeHHHhccCHHHHHHHHHHHHHHHh------------h--cCcccccccCc-ce
Confidence 96 99999999998999999999999994 5 57889999999 54
No 7
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.5e-13 Score=148.71 Aligned_cols=277 Identities=12% Similarity=0.154 Sum_probs=151.6
Q ss_pred HHHHHHHHhhccceeecc-cchhh---hcccCCCCCcceEEecCCCceeEEcCCCeeecCCCCCccccccceeEEeecHh
Q 007385 8 QKAAEVAIGSIGRGYDIA-IDLRL---KYCKGDLKDSRLIEIDKDGGREIVLPGGISIPNVSKSIKCDKGERTRFRSDVL 83 (605)
Q Consensus 8 ~~~~~~ai~~lG~G~Dlt-~D~rl---~~cK~~~~~srli~id~~~~r~l~~Pgg~~v~~v~~~ikCdk~~s~~~~Sdv~ 83 (605)
.++.-...+.||+|||++ +|.-. ...| .++|||+. ...+-|+-+... . +.-......-|. +..
T Consensus 46 r~~~~~~~d~LGygYdI~~G~yi~Gd~~s~k-----~pVIDIek---l~~~~p~~i~~~-~---~~t~~~~~~sY~-~~d 112 (541)
T 3kk7_A 46 RASFTDATDFLGCSYAVENGTSIIGDFANAK-----YPVVNMKK---LLERYPSYINPK-E---LRTTETKALSYS-DFD 112 (541)
T ss_dssp ---CCSGGGGTTEEECSTTSCSCTTCGGGEE-----EESBCHHH---HHHHCGGGEEEE-E---EEEEEEEEEEES-STT
T ss_pred ccccCccccccccccccCCCcccccCccccC-----CceeeHHH---hhhhCccceeec-c---ccccceeeeecc-chh
Confidence 334456899999999997 54432 1133 58999985 444455444221 0 000001111222 222
Q ss_pred hHHHHHHhcccceecccccCCcceeEEEEEcceeehhhc-----ccee-eeEeeEEEEEEEEEEcCCCCC--------Cc
Q 007385 84 SFQQMSEQFNQELSLTGKIPSGLFNAMFEFSGYWQKDAA-----NTKT-LAFDGMFISLYSVALEKSQMV--------LR 149 (605)
Q Consensus 84 ~f~qmse~fn~~~sl~gkIpsg~fna~f~~sGs~skdAa-----~tKs-la~dg~~I~ly~frL~~~~L~--------Ls 149 (605)
.| +-.+++-.+.+.+..+..|.|+ ++..|+..+... ++|. ++.-.+.+...+|.|....=. |+
T Consensus 113 ~~-e~~s~~tKkv~s~fSln~g~Fs--~g~k~TiT~~F~s~~~~SsKysygel~v~~~~rr~~L~~s~~~L~~i~s~YLt 189 (541)
T 3kk7_A 113 RL-EKNKTFTKTVKSGFSLNLGPFK--FGRQKTIKETFVHNTDDSEKVVHGELSIEVVNGMLNLQTAPSALRKIAADYLD 189 (541)
T ss_dssp GG-GTTCTTGGGBCTTSCCCCHHHH--HHHHHHHHHHSCCCCCCGGGEEEEEEEEEEEEEEEEECCCHHHHHHHHHHCBC
T ss_pred hH-HHHHHHHhhhccceeeeccccc--cccccceehhccccccccceeeEEEEEEeeeccEEEecCChhHHHHHHHhhch
Confidence 22 2233334444444433323341 122233222221 2332 666678889999999964322 56
Q ss_pred hhHhcc---CCCCCChHHHHHHHhccceEEEEceEecCE-EEEEEeehhcCCCCHHHHHHH--HHhhcCeeEecccCccc
Q 007385 150 DRVKKA---VPATWEPAALASFIETYGTHIIVGVRMGGK-DVIYVKQKHSSTLQPADVQKR--LKEMADKRFLDANGQYS 223 (605)
Q Consensus 150 eeF~k~---LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk-dviyVrq~ksSglT~~EVk~C--L~~~a~~~F~~~~~~sc 223 (605)
+.|..+ .|. .+||+.||||+++...+||+ .++|.-...++ .+.++=++- ....|+..+...+...-
T Consensus 190 ~~Fi~dL~n~s~-------~eIVq~YGTHVLTDI~~GGr~~alY~g~~~~~-~~~~~Kek~md~~I~As~~~~~~~~~~~ 261 (541)
T 3kk7_A 190 ELFVDALYNSSM-------VELMQSYGEFVLTGYYTGGRASALFYGVDTNS-IQFDSKEKDMDVAINASYEWKNKKPTAP 261 (541)
T ss_dssp HHHHHHHHHSCH-------HHHHHHHCSEEECEEEEEEEEEEEEEEEESSC-CSHHHHHHHHHHHHHHSEEEESCCCC--
T ss_pred HHHHHHHhhCCH-------HHHHHhhCCeEEEEEEeccEEEEEEEEeeccc-cchHHhhhhhhheeeeeeeecccccccc
Confidence 888843 444 79999999999999999999 88888433332 122222221 23334444432211000
Q ss_pred ccchhhhcccchhhhhhhcccccC----CCCcccccccCcEEEEEeecCC------------CCCcccHHHHHhhccC--
Q 007385 224 LSSEQVYQNDKFDIREQRLRFADT----SPSSSYSYKEDMVCICKRRGGS------------DNRNLSHNEWLHTVQF-- 285 (605)
Q Consensus 224 ~k~~~~~~~~k~~~~~~~~~f~~~----~~~s~vs~~eDi~vI~~vRGG~------------~~~~l~yseWl~SVk~-- 285 (605)
.. ..+ ..+..|.-. ...+......++.+.....||. ++..+++..|.+||.+
T Consensus 262 ~~--~i~--------~~S~n~s~~~~~g~~~Sl~kkn~~~~~~ikT~GG~~g~~i~~~~~~~~~~sIDls~W~~Sl~Ds~ 331 (541)
T 3kk7_A 262 SD--TIH--------SASGNLSIGTKRENSETITNKFSALSYSIKTLGGAYGYSISTPPYDITNYSIDLTPWLQSLNDPK 331 (541)
T ss_dssp ------------------CEEEESCCHHHHHHHHTTEEEEEEEEEEESSSSSCSSCCCCEETTTCCEECHHHHHHTTSGG
T ss_pred cc--cce--------eeeeecccCcccccccccccccceEEEEEEeeCCCccccccccCCCCCCcceehHHhhhhhcccc
Confidence 00 000 000011000 0011222234555666667883 2333579999999999
Q ss_pred CCCeEEe---eccccccccCCCchhhHHHHHHHHHH
Q 007385 286 EPDVTSM---SFIPITSLLNGVPGSGFLSHAINLYL 318 (605)
Q Consensus 286 nPdVIs~---kL~PI~eLL~~vpkr~nLkrAIeeYL 318 (605)
+..+|++ .|.||++||.+...++.|+.|+++||
T Consensus 332 n~~LIDI~~~gLyPIyDfI~e~n~Kqri~~t~~~~l 367 (541)
T 3kk7_A 332 THTMIDLQDGGLYPISDFILEENFKQRYNDTHMDFQ 367 (541)
T ss_dssp GCEEEEECTTCEEEGGGGCCCHHHHHHHHHHHTTSC
T ss_pred cceEEEcCCCCeeehHHhhhchhHHHHHHHHHhhcc
Confidence 6889998 79999999999989999999999888
No 8
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=23.87 E-value=54 Score=30.37 Aligned_cols=39 Identities=36% Similarity=0.602 Sum_probs=33.1
Q ss_pred Cccccccccccccc-ccCCC---CCCcceEEeeeeeeeeCceEEEEE
Q 007385 543 QAPKLLKFVDTTEM-TRGPQ---DSPGYWVVSGARLVVEKGRISLRV 585 (605)
Q Consensus 543 ~~~kl~k~vd~~e~-~~gp~---d~pg~w~vtgakl~~~~gki~l~v 585 (605)
++..|++||-++|. .-||- |+|| .||-|.|.+|+-++|-
T Consensus 24 ~~gQllevlq~ae~~~~gps~apdt~~----v~A~llvSDgthsvrc 66 (161)
T 2i46_A 24 RAGQLLEVLQDAEAAVAGPSHAPDTSD----VGATLLVSDGTHSVRC 66 (161)
T ss_dssp EEEEEEEEEECCCCCCCSCCSSCCCTT----SCEEEEEECSSCEEEE
T ss_pred chHHHHHHHHHhccccCCCCCCCCCCC----ceeEEEEcCCceEEEE
Confidence 55669999999998 47887 8888 6999999999988875
No 9
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=19.12 E-value=2.8e+02 Score=22.22 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=35.1
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEe-----cCEEEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRM-----GGKDVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtL-----GGkdviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
..||...+...+.++++.||+- ..+.+ +.+-+-+|+ =-+.++.++|+...-+..|
T Consensus 21 ~nlp~~~t~~~l~~~f~~~G~v--~~v~i~~~~~~~~g~afV~-----f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 21 SNIPFRFRDPDLRQMFGQFGKI--LDVEIIFNERGSKGFGFVT-----FENSADADRAREKLHGTVV 80 (103)
T ss_dssp ESCCTTCCHHHHHHHGGGTSCE--EEEEEECCTTTTCCEEEEE-----ESCHHHHHHHHHHHTTCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCe--EEEEEEecCCCCcEEEEEE-----ECCHHHHHHHHHHhCCCEE
Confidence 6899999999999999999973 33332 111222232 1257888888876444444
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=17.54 E-value=2.6e+02 Score=23.30 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=37.3
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEe----cC-EEEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRM----GG-KDVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtL----GG-kdviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
..||..++...+++++..||. |.++.+ ++ +-+-+|+ =-+.++.++|++..-+..+
T Consensus 11 ~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d~~~~kg~afV~-----f~~~~~A~~Ai~~l~~~~~ 70 (115)
T 4f25_A 11 KNLDKSIDNKALYDTFSAFGN--ILSCKVVCDENGSKGYGFVH-----FETQEAAERAIEKMNGMLL 70 (115)
T ss_dssp ESCCTTCCHHHHHHHHGGGSC--EEEEEEEEETTEEEEEEEEE-----ESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCHHHHHHHHhccCC--EEEEEEeecCCCCCceEEEE-----ECCHHHHHHHHHHcCCCEE
Confidence 689999999999999999997 333332 21 2333443 1268888999887554444
Done!