Query 007385
Match_columns 605
No_of_seqs 246 out of 414
Neff 4.9
Searched_HMMs 13730
Date Tue Mar 26 00:29:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wi6a1 d.58.7.1 (A:69-143) Ri 58.2 9 0.00066 28.7 5.8 55 154-215 4-58 (75)
2 d1fxla1 d.58.7.1 (A:37-118) Hu 35.8 52 0.0038 24.0 7.0 55 154-215 8-69 (82)
3 d1b7fa1 d.58.7.1 (A:123-204) S 28.9 79 0.0058 23.0 7.0 55 154-215 8-69 (82)
4 d1wg4a_ d.58.7.1 (A:) Splicing 25.8 1E+02 0.0076 23.5 7.5 56 154-216 21-76 (98)
5 d1wg1a_ d.58.7.1 (A:) Probable 24.1 33 0.0024 26.1 3.9 55 154-215 11-65 (88)
6 d1whxa_ d.58.7.1 (A:) Probable 23.5 67 0.0049 24.7 5.9 53 154-215 16-71 (111)
7 d2cqia1 d.58.7.1 (A:1-90) Nucl 23.2 74 0.0054 23.8 6.0 55 154-215 14-73 (90)
8 d1xksa_ b.69.14.1 (A:) Nuclear 20.4 9.7 0.0007 38.0 -0.1 42 536-577 10-52 (403)
9 d1fxla2 d.58.7.1 (A:119-203) H 18.2 45 0.0033 24.9 3.6 50 154-210 12-68 (85)
10 d1e0ta1 b.58.1.1 (A:70-167) Py 16.9 25 0.0019 27.5 1.7 18 570-587 50-67 (98)
No 1
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.21 E-value=9 Score=28.71 Aligned_cols=55 Identities=7% Similarity=0.219 Sum_probs=41.0
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEecCEEEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGkdviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
..||..++..+...+++.||..++.-..-.|-.++-.. +.++.++++...-+..+
T Consensus 4 ~nLp~~~t~~~l~~~F~~~g~~~~~~~~~~g~afv~f~-------~~~~A~~Ai~~ln~~~~ 58 (75)
T d1wi6a1 4 RGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLL-------NGEQAEAAINTFHQSRL 58 (75)
T ss_dssp ECCCTTCCHHHHHHHTTTSCEEEEEEETTTTEEEEEES-------SHHHHHHHHHHHTTEES
T ss_pred eCCCCcCCHHHHHHHHhcccccceeecccceeEEEEEC-------CHHHHHHHHHHhCCccC
Confidence 57999999999999999999777666665565544333 68888888876544444
No 2
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.79 E-value=52 Score=24.02 Aligned_cols=55 Identities=16% Similarity=0.374 Sum_probs=37.8
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEe-----cCE--EEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRM-----GGK--DVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtL-----GGk--dviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
..||..++..+..++++.||.- ..+.+ .|+ -+-+|. =.+.++.+.|++..-+..+
T Consensus 8 ~nLp~~~te~~l~~~f~~~G~v--~~v~i~~~~~~~~~~g~afv~-----f~~~~~a~~a~~~l~g~~~ 69 (82)
T d1fxla1 8 NYLPQNMTQEEFRSLFGSIGEI--ESCKLVRDKITGQSLGYGFVN-----YIDPKDAEKAINTLNGLRL 69 (82)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCE--EEEEEEECTTTCCEEEEEEEE-----ESSHHHHHHHHHHHTTCEE
T ss_pred ECCCCCCCHHHHHHHHHHhCCc--ccccceeeccCCCceeeEEEE-----ECCHHHHHHHHHHhCCCEE
Confidence 6899999999999999999974 33332 233 233443 1368888999876544444
No 3
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=28.95 E-value=79 Score=22.98 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=38.1
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEe-----cCE--EEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRM-----GGK--DVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtL-----GGk--dviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
..||..++.....++++.||. |.++.+ .|+ -+-+|+ =.+.++.+.|++..-+..+
T Consensus 8 ~nLp~~~t~~~l~~~F~~~G~--v~~~~i~~~~~~g~~~g~afV~-----f~~~~~A~~ai~~lng~~~ 69 (82)
T d1b7fa1 8 NYLPQDMTDRELYALFRAIGP--INTCRIMRDYKTGYSYGYAFVD-----FTSEMDSQRAIKVLNGITV 69 (82)
T ss_dssp ECCCTTCCHHHHHHHHHTTSC--EEEEECCEETTTTEECSEEEEE-----ESSHHHHHHHHHHHTTCEE
T ss_pred eCCCCCCCHHHHHHHHHHhCC--cceeeeeeecccCCccccceEE-----ECCHHHHHHHHHHhCCCEE
Confidence 689999999999999999997 555544 233 233332 1368889999876544443
No 4
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.80 E-value=1e+02 Score=23.55 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=39.9
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEecCEEEEEEeehhcCCCCHHHHHHHHHhhcCeeEe
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRFL 216 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGkdviyVrq~ksSglT~~EVk~CL~~~a~~~F~ 216 (605)
.+||...+..++.+|+..||+=....+..-|..++... +.++.+.|++..-+..|.
T Consensus 21 ~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~~g~afV~f~-------~~~~a~~Ai~~lng~~~~ 76 (98)
T d1wg4a_ 21 SGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYL-------RKEDMEYALRKLDDTKFR 76 (98)
T ss_dssp ECCCSSCCHHHHHHHHTTSSCEEEEEEETTTEEEEEES-------SHHHHHHHHHHHSSEEEE
T ss_pred ECCCCCCCHHHHHHHHHhhcccccccccccceEEEEEC-------CHHHHHHHHHHhCCCEeC
Confidence 78999999999999999999844444333343333333 789999999875555553
No 5
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.05 E-value=33 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=36.4
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEecCEEEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRMGGKDVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGkdviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
..||..++..+++++++.||.-.+.-....|-. +|. =-+.++.+++++..-+..|
T Consensus 11 ~nLp~~~t~~~l~~lF~~~G~~~~~~~~~kg~a--fV~-----f~~~~~A~~Ai~~ln~~~~ 65 (88)
T d1wg1a_ 11 KNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTA--FVT-----LLNGEQAQNAIQMFHQYSF 65 (88)
T ss_dssp ESCCSSCCHHHHHHHTCSSCCCCEEEEGGGTEE--EEC-----CSCHHHHHHHHHHHTTEEE
T ss_pred eCCCCccChHHHHHHHHhcCceeeeeeccCCce--EEE-----ECCHHHHHHHHHHhCCCEE
Confidence 689999999999999999994222211222222 222 2368888999887665555
No 6
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.45 E-value=67 Score=24.68 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=39.0
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEecCE---EEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRMGGK---DVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtLGGk---dviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
++||...+-.+++.|+..||. |+.+.|+-. .+|... +.++.++|++..-+..|
T Consensus 16 ~nLp~~~t~~~L~~~F~~fG~--I~~v~l~~~kg~afV~f~-------~~~~A~~A~~~lng~~~ 71 (111)
T d1whxa_ 16 KNLPAGTLAAEIQETFSRFGS--LGRVLLPEGGITAIVEFL-------EPLEARKAFRHLAYSKF 71 (111)
T ss_dssp ESCCTTCCHHHHHHHHHTTSC--EEEEECCSSSSCEEEEES-------CHHHHHHHHHHHTTCBS
T ss_pred ECCCCCCCHHHHHhhhhccCC--ccEEEeeccCceEEEEEc-------CHHHHHHHHHHHcCCcc
Confidence 789998999999999999996 667777543 333222 57888888877555444
No 7
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.24 E-value=74 Score=23.82 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=37.8
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEe-----cCEEEEEEeehhcCCCCHHHHHHHHHhhcCeeE
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRM-----GGKDVIYVKQKHSSTLQPADVQKRLKEMADKRF 215 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtL-----GGkdviyVrq~ksSglT~~EVk~CL~~~a~~~F 215 (605)
..||...+.....++++.||. |..+.+ +|+-+-+|. =-+.++.+.|++..-+..+
T Consensus 14 ~nLp~~~te~~l~~~F~~~G~--i~~v~i~~d~~~~~~~afV~-----f~~~~~A~~A~~~l~~~~~ 73 (90)
T d2cqia1 14 GNLSRDVTEVLILQLFSQIGP--CKSCKMITEHTSNDPYCFVE-----FYEHRDAAAALAAMNGRKI 73 (90)
T ss_dssp ESCCTTCCHHHHHHHHHHHSC--EEEEEEECCCCSSCCEEEEE-----ESSHHHHHHHHHHHTTEEE
T ss_pred ECCCCCCCHHHHHHHHHhcCC--ceeeeeecccCccceeeEEE-----ECCHHHHHHHHHHcCCCEE
Confidence 789999999999999999997 344443 334333332 1268888899886544444
No 8
>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.45 E-value=9.7 Score=38.04 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=35.6
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCcc-eEEeeeeeeee
Q 007385 536 GGPPVPVQAPKLLKFVDTTEMTRGPQDSPGY-WVVSGARLVVE 577 (605)
Q Consensus 536 ~gpp~p~~~~kl~k~vd~~e~~~gp~d~pg~-w~vtgakl~~~ 577 (605)
=|+|.|++...-|.|-|.++-+.+==+.=|| |+|+|-||.|=
T Consensus 10 ~g~~LPv~V~EaLt~a~~~~~~s~~~s~~G~awvv~g~~l~VW 52 (403)
T d1xksa_ 10 FGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLIIW 52 (403)
T ss_dssp CSSCCCHHHHHHHHHCCTTSCEEEEECTTSEEEEEETTEEEEE
T ss_pred CCCCCcHHHHHHhhhcCCCCceEEEECCCcEEEEEECCEEEEE
Confidence 4889999999999999988888877666685 99999999874
No 9
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.21 E-value=45 Score=24.92 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=35.2
Q ss_pred ccCCCCCChHHHHHHHhccceEEEEceEe-----cCE--EEEEEeehhcCCCCHHHHHHHHHhh
Q 007385 154 KAVPATWEPAALASFIETYGTHIIVGVRM-----GGK--DVIYVKQKHSSTLQPADVQKRLKEM 210 (605)
Q Consensus 154 k~LPs~Yd~~aYa~FIe~YGTHYItsgtL-----GGk--dviyVrq~ksSglT~~EVk~CL~~~ 210 (605)
..||..++...++++++.||+ |.++.+ .|+ -+-+|. =.+.++.+.|++..
T Consensus 12 ~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d~~~g~~kg~afV~-----f~~~~~a~~Ai~~l 68 (85)
T d1fxla2 12 SGLPKTMTQKELEQLFSQYGR--IITSRILVDQVTGVSRGVGFIR-----FDKRIEAEEAIKGL 68 (85)
T ss_dssp ESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTTTCCEEEEEEEE-----ESSHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHhCC--ccccccccccccccCCCeeEEE-----EcCHHHHHHHHHHh
Confidence 689999999999999999998 444433 344 343443 12678888888754
No 10
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]}
Probab=16.87 E-value=25 Score=27.49 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.9
Q ss_pred eeeeeeeeCceEEEEEEe
Q 007385 570 SGARLVVEKGRISLRVKY 587 (605)
Q Consensus 570 tgakl~~~~gki~l~vk~ 587 (605)
.|.++.+++|+|.|+|.-
T Consensus 50 ~Gd~IlidDG~i~l~V~~ 67 (98)
T d1e0ta1 50 VGNTVLVDDGLIGMEVTA 67 (98)
T ss_dssp TTCEEEETTTTEEEEEEE
T ss_pred CCcEEEEcCCceeEEEee
Confidence 478999999999999964
Done!