BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007386
(605 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225461941|ref|XP_002266069.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 734
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/602 (65%), Positives = 488/602 (81%), Gaps = 8/602 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNF++F RQELP+DG +YEFLCQTTS+DFLAKYQFDFNACI+EG+SYLSREQE++ L+ +
Sbjct: 126 HNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQFDFNACIYEGISYLSREQENEMLRCL 185
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
NS +DE W ++KE+RDT L ++ D+LF+ERMK+R +EW LL++R GS+ +
Sbjct: 186 NSECDDEMSLLWRNMKEVRDTPLVSVADVLFSERMKNRFNEWRKELLQDRKGGSQFLETS 245
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
ND KQQF+TIFFKMRPA+ LNGFT+HQL LIQLV++KHFKDL Y+R SG+ S S+ +IVY
Sbjct: 246 NDMKQQFQTIFFKMRPALILNGFTAHQLRLIQLVIKKHFKDLVYIRSSGDGSYSE-LIVY 304
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
I+S++DK +LMKEVKD + +AEM IK ++GFRHVIDLLSSE+KLIVGHNC LDIAHIY+
Sbjct: 305 IDSDNDKNLLMKEVKDGLRREAEMKIKTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYN 364
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFFGPLPLTAE+F+SS++KYFP++IDTKILLN+N++L+ MK STSLSKAF+ LCPQIA
Sbjct: 365 KFFGPLPLTAEDFVSSIHKYFPYMIDTKILLNTNNVLKHLMKNGSTSLSKAFASLCPQIA 424
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
SK++ LA QP V+VEV+VDD+RSSNWNSG KHEAGYDAFMTGCVFAQACS+LGIDFK+
Sbjct: 425 SSSKNSGLAFQPWVEVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKK 484
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
SSS NLAHN+ L++HVN LY SW NG+II+L TGNR + + K YPKILF IV
Sbjct: 485 HSSSANLAHNKNLQKHVNHLYFSWVNGDIIDLGTGNRIAATTVCYNLKRRYPKILFSNIV 544
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
IVWGFPS L + IRECISK +GP SV ++YH+DETAVFVQFS+ E+V+ FL LK +L+
Sbjct: 545 IVWGFPSQLSSKKIRECISKAFGPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLET 604
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
DPISVLHPL+ LLEGGNTCAASYETYKEICSS +SKV+FADQAKAVGIKWKTKL+ES
Sbjct: 605 IQDPISVLHPLSVLLEGGNTCAASYETYKEICSSPISKVMFADQAKAVGIKWKTKLIESK 664
Query: 547 D--KTKEHESLRKVKAVN---SDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTRE 601
+ KT+E ES K SDP+ +++K + +DV ++ S ++S EIIDS Y +
Sbjct: 665 EKVKTQEDESFSKENGATDAASDPA--DKSKTRKIEDVIDNLSDDRISGSEIIDSLYAAQ 722
Query: 602 AK 603
K
Sbjct: 723 TK 724
>gi|296089929|emb|CBI39748.3| unnamed protein product [Vitis vinifera]
Length = 715
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/589 (65%), Positives = 481/589 (81%), Gaps = 8/589 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNF++F RQELP+DG +YEFLCQTTS+DFLAKYQFDFNACI+EG+SYLSREQE++ L+ +
Sbjct: 126 HNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQFDFNACIYEGISYLSREQENEMLRCL 185
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
NS +DE W ++KE+RDT L ++ D+LF+ERMK+R +EW LL++R GS+ +
Sbjct: 186 NSECDDEMSLLWRNMKEVRDTPLVSVADVLFSERMKNRFNEWRKELLQDRKGGSQFLETS 245
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
ND KQQF+TIFFKMRPA+ LNGFT+HQL LIQLV++KHFKDL Y+R SG+ S S+ +IVY
Sbjct: 246 NDMKQQFQTIFFKMRPALILNGFTAHQLRLIQLVIKKHFKDLVYIRSSGDGSYSE-LIVY 304
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
I+S++DK +LMKEVKD + +AEM IK ++GFRHVIDLLSSE+KLIVGHNC LDIAHIY+
Sbjct: 305 IDSDNDKNLLMKEVKDGLRREAEMKIKTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYN 364
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFFGPLPLTAE+F+SS++KYFP++IDTKILLN+N++L+ MK STSLSKAF+ LCPQIA
Sbjct: 365 KFFGPLPLTAEDFVSSIHKYFPYMIDTKILLNTNNVLKHLMKNGSTSLSKAFASLCPQIA 424
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
SK++ LA QP V+VEV+VDD+RSSNWNSG KHEAGYDAFMTGCVFAQACS+LGIDFK+
Sbjct: 425 SSSKNSGLAFQPWVEVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKK 484
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
SSS NLAHN+ L++HVN LY SW NG+II+L TGNR + + K YPKILF IV
Sbjct: 485 HSSSANLAHNKNLQKHVNHLYFSWVNGDIIDLGTGNRIAATTVCYNLKRRYPKILFSNIV 544
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
IVWGFPS L + IRECISK +GP SV ++YH+DETAVFVQFS+ E+V+ FL LK +L+
Sbjct: 545 IVWGFPSQLSSKKIRECISKAFGPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLET 604
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
DPISVLHPL+ LLEGGNTCAASYETYKEICSS +SKV+FADQAKAVGIKWKTKL+ES
Sbjct: 605 IQDPISVLHPLSVLLEGGNTCAASYETYKEICSSPISKVMFADQAKAVGIKWKTKLIESK 664
Query: 547 D--KTKEHESLRKVKAVN---SDPSCGERTKNKNFDDVSNDSSYSQLSS 590
+ KT+E ES K SDP+ +++K + +DV ++ S ++S+
Sbjct: 665 EKVKTQEDESFSKENGATDAASDPA--DKSKTRKIEDVIDNLSDDRISA 711
>gi|147799285|emb|CAN76999.1| hypothetical protein VITISV_007764 [Vitis vinifera]
Length = 720
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/602 (62%), Positives = 466/602 (77%), Gaps = 22/602 (3%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNF++F RQELP+DG +YEFLCQTTS+DFLAKYQFDFNACI+EGVSYLSREQE++ L+ +
Sbjct: 126 HNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQFDFNACIYEGVSYLSREQENEMLRCL 185
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
NS +DE W ++KE+RDT L ++ D+LF+ERMK+R +EW LL++R GS+ +
Sbjct: 186 NSECDDEMSLLWRNMKEVRDTPLVSVADVLFSERMKNRFNEWRKELLQDRKGGSQFLETS 245
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
ND KQQF+TIFFKMRPA+ LNGFT+HQL LIQLV++KHFKDL Y+R SG+ S S+ +IVY
Sbjct: 246 NDMKQQFQTIFFKMRPALILNGFTAHQLRLIQLVIKKHFKDLVYIRSSGDGSYSE-LIVY 304
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
I+S++DK +LMKEVKD + +AEM IK ++GFRHVIDLLSSE+KLIVGHNC LDIAHIY+
Sbjct: 305 IDSDNDKNLLMKEVKDGLRREAEMKIKTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYN 364
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFFGPLPLTAE+F+SS++KYFP++IDTKILLN+N++L+ MK STSLSKAFS LCPQIA
Sbjct: 365 KFFGPLPLTAEDFVSSIHKYFPYMIDTKILLNTNNVLKHLMKNGSTSLSKAFSSLCPQIA 424
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
SK++ LA +P V+VEV+VDD+RSSNWNSG KHEAGYDAFMTGCVFAQACS+LGIDFK+
Sbjct: 425 SSSKNSGLAFKPWVEVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKK 484
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
SSS NLAHN+ L++HVN LY SW NG+II+LSTGNR + + K YPKILF IV
Sbjct: 485 HSSSANLAHNKNLQKHVNHLYFSWVNGDIIDLSTGNRIAATAVCYNLKRRYPKILFSNIV 544
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
IVWGFPS L + IRECISKV+GP SV +YH+DETAVFVQFS+ E+V+ FL
Sbjct: 545 IVWGFPSQLSSKKIRECISKVFGPISVTMIYHLDETAVFVQFSKPELVADFL-------- 596
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
P + SYETYKEICSS +SKV+FADQAKAVGIKWKTKL+ES
Sbjct: 597 ------FCIPSQYCWKVETLVLPSYETYKEICSSPISKVMFADQAKAVGIKWKTKLIESK 650
Query: 547 D--KTKEHESLRKVKAVN---SDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTRE 601
+ KT+E ES K SDP+ +++K + +DV +D S ++S EIIDS Y +
Sbjct: 651 EKVKTQEDESFSKENGATDAASDPA--DKSKTRKIEDVIDDLSDDRISGSEIIDSLYAAQ 708
Query: 602 AK 603
K
Sbjct: 709 TK 710
>gi|224061228|ref|XP_002300380.1| predicted protein [Populus trichocarpa]
gi|222847638|gb|EEE85185.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/539 (68%), Positives = 440/539 (81%), Gaps = 8/539 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFFIF RQE+P+D ++YEFLCQTTS+DFLAKY FDFN CI +GVSYLSR QED+AL+ +
Sbjct: 113 HNFFIFPRQEVPIDSSSYEFLCQTTSIDFLAKYHFDFNVCIRQGVSYLSRGQEDEALRLL 172
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N YE+E + + RD L +I DILF+ERMK+RL EW GLL++ GS+++ SF
Sbjct: 173 NLRYENELSE------QARDVPLVSITDILFSERMKNRLREWRDGLLKDTSGGSQLEGSF 226
Query: 127 -NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIV 185
NDS QQF+ IF+KMRPA+SLNGFTS QL LIQ V +KHFKDLA +RV GE+SCSQ ++V
Sbjct: 227 LNDSNQQFQNIFYKMRPALSLNGFTSRQLRLIQSVTKKHFKDLASVRVEGESSCSQQLVV 286
Query: 186 YIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
Y +SESD+ +L KEV D+ + AEM IKA+IGFRHVIDLLSSEKKLIVGHNCFLD+AHI+
Sbjct: 287 YTDSESDRDLLKKEVMDDYRRQAEMKIKAAIGFRHVIDLLSSEKKLIVGHNCFLDLAHIH 346
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 305
SKF GPLPL AEEF+ SVNK FP+IIDTKILLN+N+IL+QRMKKS TSLS AF LCPQI
Sbjct: 347 SKFLGPLPLEAEEFVYSVNKCFPYIIDTKILLNTNNILKQRMKKSKTSLSSAFLSLCPQI 406
Query: 306 ALGSK-STHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDF 364
A SK S +L SVKVEV+VDDIRSS+W SGVKHEAGYDAFMTGCVFAQAC+ LGIDF
Sbjct: 407 AFASKESCNLTFSSSVKVEVQVDDIRSSSWISGVKHEAGYDAFMTGCVFAQACNLLGIDF 466
Query: 365 KQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFEC 424
K S SENLA NE+L++H NLLYLSW NG+II+LSTG+RT+ESL K ILFE
Sbjct: 467 KLYSPSENLACNERLQKHANLLYLSWINGDIIDLSTGHRTAESLRCRDLKKSQTGILFEN 526
Query: 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSL 484
IV++WGFPS LK I++ ISKV+GPTSV S+ +DETAVFVQFS+ ++V+ FL +K +L
Sbjct: 527 IVLIWGFPSKLKTAVIKDRISKVFGPTSVTSICRLDETAVFVQFSKLKLVADFLVVKETL 586
Query: 485 DRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLV 543
+R+ND SVLHPL+ +LEGGNTCAASYETYK+ICSS SK+LFADQA+AVGI+WKTKLV
Sbjct: 587 ERSNDAFSVLHPLSTILEGGNTCAASYETYKDICSSPTSKLLFADQAEAVGIRWKTKLV 645
>gi|255563538|ref|XP_002522771.1| conserved hypothetical protein [Ricinus communis]
gi|223538009|gb|EEF39622.1| conserved hypothetical protein [Ricinus communis]
Length = 699
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/601 (62%), Positives = 461/601 (76%), Gaps = 26/601 (4%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFFIF+ EFLCQ TS++FLAKYQFDFN CI EG+SYLSR QE++AL+ +
Sbjct: 118 YNFFIFRED--------CEFLCQATSLEFLAKYQFDFNTCILEGMSYLSRRQEEEALRRL 169
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N YED +L+ ++ D L +I DILF+ERMK+RLSEW GLL+N G+ + S
Sbjct: 170 NLRYEDSNLN------DVGDVPLASITDILFSERMKNRLSEWRDGLLKN---GNGIGDS- 219
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
QF+TIF+KMRPA+ L+GFTSHQL LIQLV RKHF++LAY+ G++S Q ++VY
Sbjct: 220 -----QFQTIFYKMRPALCLSGFTSHQLKLIQLVTRKHFENLAYVGC-GQSSSLQELVVY 273
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
I+SE+DK +LMKEVKDE + AEM IK +IGFRHVIDLLSS +KLIVGHNCFLDIAHI+S
Sbjct: 274 IDSENDKDLLMKEVKDEYRKGAEMKIKNAIGFRHVIDLLSSAQKLIVGHNCFLDIAHIHS 333
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP TAEEF+S+VNKYFPHIIDTKILLN+N++L QRMKKS TSLS AFS+LCPQ+A
Sbjct: 334 KFLGPLPPTAEEFVSAVNKYFPHIIDTKILLNANNVLLQRMKKSGTSLSAAFSLLCPQLA 393
Query: 307 LGS-KSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFK 365
S K + A +P V VEV+VDD RSSNW+SGVKHEAGYDAFMTGCVFAQAC+HLG+DFK
Sbjct: 394 TSSNKGINWASRPCVNVEVQVDDTRSSNWSSGVKHEAGYDAFMTGCVFAQACNHLGVDFK 453
Query: 366 QQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECI 425
+SSSENLAHNEKL++ +NLLY+SW N +II+L TGNR +ESL N + P ILF+ I
Sbjct: 454 LKSSSENLAHNEKLQKLINLLYISWINWDIIDLRTGNRVAESLGFNYLRKQRPNILFKNI 513
Query: 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLD 485
V++W FPS LKA +IRECI K +G SV S+YHVDETAVFVQFS+AE+VS+FL LK SLD
Sbjct: 514 VLIWRFPSRLKAGEIRECICKAFGLNSVTSIYHVDETAVFVQFSKAELVSEFLVLKESLD 573
Query: 486 RNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVES 545
R+NDPISVLHPL+KLL+GGNTCAA YETYKEICSS +SKV FADQA AVGI WKTKLVES
Sbjct: 574 RSNDPISVLHPLSKLLDGGNTCAADYETYKEICSSPISKVRFADQAAAVGINWKTKLVES 633
Query: 546 S-DKTKEHESLRKVKAVNSDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREAKQ 604
D +H+ + + S + N V +D + + D++IDSFY E ++
Sbjct: 634 KIDAESQHQDSFYKEDARTTKSASTKKSNAGDHSVIDDLLSGRSACDQVIDSFYAAEDQR 693
Query: 605 I 605
I
Sbjct: 694 I 694
>gi|356524370|ref|XP_003530802.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 718
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/599 (58%), Positives = 449/599 (74%), Gaps = 5/599 (0%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNF++F RQE+ G EFLCQTTSMDFLAKYQFDFNACIHEG+SYLSREQE +AL+ +
Sbjct: 120 HNFYVFPRQEIAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQEREALRSL 179
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
NSTY+ LK +RD L + DILF RMK++ EW GL + +++ ++Q
Sbjct: 180 NSTYDSSEWSDIGKLKNVRDIPLLSTADILFTARMKNKFGEWRDGLFQEQNQEDQIQGIS 239
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
DSK F+ FF+M PA+ LNGFTSHQL LIQLV+RKHFKDL+Y+ V+ E S SQ ++VY
Sbjct: 240 KDSK--FQVTFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNSETSGSQQLVVY 297
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+S+ + +L+K+VK+E E I+A++GFRHVIDLLSSE+KLIVG+NCFLDIAH+YS
Sbjct: 298 TDSKDELNLLLKKVKEENHRAEEKKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYS 357
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP + +EF++SVNK FPHI+DT ILLN+N + Q++MK+S SL+ AF++ CPQIA
Sbjct: 358 KFIGPLPGSPDEFVASVNKCFPHIVDTIILLNTNLMFQEKMKRSRKSLASAFTLFCPQIA 417
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
GS+ST L VKV+VEVD RS +WN G KHEAGYDAFMTGC+FAQ CS LGIDFK
Sbjct: 418 AGSRSTDLGSLSHVKVDVEVDGSRSCSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKL 477
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
+ SS LA NEKL+++VN LYLSW +G+II+L+TGN+ ++S S+ K YP ILFE IV
Sbjct: 478 RDSSNQLALNEKLQKYVNRLYLSWIHGDIIDLNTGNKVADSSPSHSLKKRYPTILFENIV 537
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
I+WGFPS LKA ++RECISK +GPTSV+SV+H+D TA FVQFS+ E+VS FL +K SL+R
Sbjct: 538 IIWGFPSKLKANEVRECISKAFGPTSVVSVFHLDATAAFVQFSKTELVSDFLLVKDSLER 597
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVES- 545
++ ISVLHPL+KLLEGGNTCAA+Y+TY EIC S +S+ LFADQAK VGIKWKTKL E
Sbjct: 598 SDGAISVLHPLSKLLEGGNTCAANYDTYNEICGSPLSEGLFADQAKKVGIKWKTKLTECK 657
Query: 546 -SDKTKEHESLR-KVKAVNSDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREA 602
+ + +EHE+ + VN+ E+TK D + N SS Q+S+ EI DS EA
Sbjct: 658 VASRGEEHENPSLQANDVNTAMKNVEKTKPNTIDQLGNASSRGQVSTFEIEDSSRVAEA 716
>gi|356569615|ref|XP_003552994.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 714
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/598 (59%), Positives = 452/598 (75%), Gaps = 7/598 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNF++F RQ+L G EFLCQTTSMDFLAKYQFDFNACIHEG+SYLSREQE KAL+ +
Sbjct: 120 HNFYVFPRQQLAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQERKALRSL 179
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
NSTY+ E D LK++RD L + DILF RMK++ SEW GL + +++ ++Q
Sbjct: 180 NSTYDSEWSD-IGKLKDVRDIPLLSAADILFTARMKNKFSEWRDGLFQEQNQEDQIQGIS 238
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
NDSK F+ FF+M PA+ LN FTSHQL LIQL++RKHFKDL+Y+ V+ E S SQ ++VY
Sbjct: 239 NDSK--FQVTFFEMHPALRLNRFTSHQLKLIQLLIRKHFKDLSYVSVNSEASGSQQLVVY 296
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+ + + +L+K+VK+E EM I+A++GFRHVIDLLSSE+KLIVG+NCFLDIAH+YS
Sbjct: 297 TDLKDELNLLLKKVKEENHRAEEMKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYS 356
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP T EEF++SV+K FPHI+DTKILL++N + Q++MK+S SL+ AF+ CPQIA
Sbjct: 357 KFIGPLPGTPEEFVASVSKCFPHIVDTKILLSTNLMFQEKMKRSRKSLASAFTSFCPQIA 416
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
GS+ST L VKV VEVDD RS +W+ G KHEAGYDAFMTGC+FAQ CS LGIDFK
Sbjct: 417 AGSRSTDLGSLSHVKVNVEVDDSRSCSWSPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKL 476
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
SS+ LA NEKL+++VN LYLSW + +II+L+TGN+ ++S + K YPKI+FE IV
Sbjct: 477 HDSSKPLALNEKLQKYVNRLYLSWMHRDIIDLNTGNKVADSSLRSLTK-RYPKIMFENIV 535
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
I+WGF S LKA +IRECISKV+GPTSV+SV+H+D TA FVQFS+ E+VS FL +K SL+R
Sbjct: 536 IIWGFSSKLKANEIRECISKVFGPTSVVSVFHLDATAAFVQFSKTELVSDFLLVKDSLER 595
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVE-- 544
+ ISVLHPL+KLLEGGNTC A+Y+TY+EIC S++S+ LFADQA+AVGIKWKTKL E
Sbjct: 596 SGGAISVLHPLSKLLEGGNTCGANYDTYREICGSSLSEGLFADQAEAVGIKWKTKLTEYK 655
Query: 545 SSDKTKEHESLRKVKAVNSDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREA 602
+ + KEHE+ VN+ ERTK D + N S Q+S+ EI DS Y EA
Sbjct: 656 VASRGKEHENPSVQDNVNTVMKNVERTKPNTIDQLGNAPSCGQVSTFEIEDS-YVAEA 712
>gi|449461041|ref|XP_004148252.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
gi|449524565|ref|XP_004169292.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 700
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/550 (58%), Positives = 418/550 (76%), Gaps = 5/550 (0%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFFIF R E+ +DG + EFLCQTTSM+FLAKYQFDFNACI+EG+SYLSR ED A K +
Sbjct: 127 HNFFIFPRHEIEVDGPSSEFLCQTTSMEFLAKYQFDFNACIYEGISYLSRAHEDAARKRL 186
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N Y DE LD+ ++ + D IPD+LF ERMK+RL EW LL R+ + Q
Sbjct: 187 NFAYGDEMLDASSNVTNVMDKKRVGIPDVLFKERMKNRLHEWRDRLLSERNMEFQGQEGS 246
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
ND K+QF+TIFFKMRPA++L+ FTSHQ+ LIQLV++KHF+DL ++ V+ N+ Q ++V+
Sbjct: 247 NDHKRQFQTIFFKMRPALTLSDFTSHQIKLIQLVIKKHFEDLCFVVVNDGNADLQQLVVF 306
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++S DK++LM+EV +QK EM I+++IGFRHVIDLLSSEKKLIVGHNCFLD+ HI+
Sbjct: 307 VDSRDDKELLMQEVNRDQKEVNEMKIQSAIGFRHVIDLLSSEKKLIVGHNCFLDMLHIHR 366
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF G LP T EEF+SS+ K+FP+I+DTKILLN N+IL +RM KS+TSLS AF +LCP IA
Sbjct: 367 KFIGSLPSTTEEFVSSLGKHFPYIMDTKILLNGNNILIRRMNKSNTSLSSAFGLLCPHIA 426
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S+ A V+VEV+VDD+RSS WNSG HEAGYDAFMTGCVFAQAC +GIDF
Sbjct: 427 FSSQRVS-AWNSGVQVEVQVDDLRSSKWNSGDTHEAGYDAFMTGCVFAQACDLMGIDFVD 485
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
+S+SENL NE L++H+N LYLSW G+II+LSTGN+ +ES + K H K+ F+ IV
Sbjct: 486 RSTSENLLGNEILQKHINRLYLSWARGDIIDLSTGNQVTESFTTRK---HRAKVSFQNIV 542
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++WGFP++L A I+ CISK +G T+V SV H+DE+AVFVQF++ EMVS+FLDLK L++
Sbjct: 543 LIWGFPTNLTARKIKACISKAFGQTNVSSVNHLDESAVFVQFTKPEMVSEFLDLKEKLEK 602
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
+DP+SVLHPL +L + T AA YE YK+ICSS +SK LF+DQA+AVGI KT ++S
Sbjct: 603 RDDPLSVLHPLTELFDVRTTHAAGYEAYKKICSSPMSKHLFSDQAEAVGINRKTTSIKSE 662
Query: 547 DK-TKEHESL 555
+K ++ H+++
Sbjct: 663 EKRSRMHQAV 672
>gi|297847952|ref|XP_002891857.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
gi|297337699|gb|EFH68116.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/558 (57%), Positives = 405/558 (72%), Gaps = 10/558 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFF+F RQEL D A+EFLCQTTSMDFLAKYQFDFN CIHEG+SYLSR QE++A K +
Sbjct: 124 HNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRRQEEEASKRL 183
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ +E + S E D L + D LFA RM+ L+EW GLL + SE
Sbjct: 184 EMLHGEEGIVS---SGETEDLKLVRLADTLFAVRMEKMLNEWRSGLLHGGNASSEFPRIS 240
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
N S Q ET+F MRPA+SL GFTSHQL ++ V+ KHF DL Y+ + ++SCSQ +VY
Sbjct: 241 NGSTQSMETVFHHMRPALSLKGFTSHQLRVLNSVLGKHFGDLVYIHSNDKDSCSQGFVVY 300
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+SESDK+ LMKE KDE+K AE I+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YS
Sbjct: 301 TDSESDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYS 360
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP TAE+F++S+N +FP+I+DTKILLN N +L QRMKKSSTSLS AFS LCPQI
Sbjct: 361 KFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIE 420
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S+S+ LQ V ++VE+D++R SNWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ
Sbjct: 421 FSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQ 480
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S +N A NEKL +++N LYLSWT G+IINL TG+ +++ +K K +E IV
Sbjct: 481 HSQLDNFAQNEKLEKYINRLYLSWTRGDIINLRTGHSNADNWRVSKFK-------YENIV 533
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++W FP LKA +I+ECI K +G SV SVYHVD++AVFV F +E+V FL LK L+
Sbjct: 534 LIWNFPRKLKAREIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLTLKRQLES 593
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
++ P+SVLHPL+K+LEGGNT AA YE YKEICSS +SK+LF+DQA+ VG+K +T+
Sbjct: 594 SDGPVSVLHPLSKILEGGNTGAADYEAYKEICSSNISKILFSDQAETVGVKSRTRPDPQG 653
Query: 547 DKTKEHESLRKVKAVNSD 564
+ + E+ V SD
Sbjct: 654 ETQRREENTVAVTHKASD 671
>gi|240254280|ref|NP_175983.5| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|60390594|sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease; Short=AtPARN;
AltName: Full=Protein ABA hypersensitive germination 2
gi|65736526|dbj|BAD98514.1| poly(A)-specific ribonuclease [Arabidopsis thaliana]
gi|332195190|gb|AEE33311.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 689
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/535 (57%), Positives = 403/535 (75%), Gaps = 10/535 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFF+F RQEL D A+EFLCQTTSMDFLAKYQFDFN CIHEG+SYLSR +E++A K +
Sbjct: 124 HNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRREEEEASKRL 183
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ ++ +DS +E++ L + D+LFA RM+ L+EW GLL + SE
Sbjct: 184 KMLHGEDGIDSSGETEELK---LVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRIS 240
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
N S Q ET+F MRPA+SL GFTSHQL ++ V+RKHF DL Y+ + ++S S++++VY
Sbjct: 241 NGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVY 300
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+S+SDK+ LMKE KDE+K AE I+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YS
Sbjct: 301 TDSDSDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYS 360
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP TAE+F++S+N +FP+I+DTKILLN N +L QRMKKSSTSLS AFS LCPQI
Sbjct: 361 KFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIE 420
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S+S+ LQ V ++VE+D++R SNWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ
Sbjct: 421 FSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQ 480
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S ++ A NEKL +++N LYLSWT G+II+L TG+ +++ +K K +E IV
Sbjct: 481 HSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLRTGHSNADNWRVSKFK-------YENIV 533
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++W FP LKA I+ECI K +G SV SVYHVD++AVFV F +E+V FL LK L+
Sbjct: 534 LIWNFPRKLKARGIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLES 593
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTK 541
++ P+SVLHPL+K+LEGGNT AA YE YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 594 SDGPVSVLHPLSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRTR 648
>gi|240254282|ref|NP_001077725.4| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|78484002|dbj|BAE47490.1| polyA specific ribonuclease [Arabidopsis thaliana]
gi|332195191|gb|AEE33312.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 540
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/509 (57%), Positives = 382/509 (75%), Gaps = 10/509 (1%)
Query: 33 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 92
MDFLAKYQFDFN CIHEG+SYLSR +E++A K + + ++ +DS +E++ L +
Sbjct: 1 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 57
Query: 93 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 152
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 58 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 117
Query: 153 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 212
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 118 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 177
Query: 213 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 272
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 178 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 237
Query: 273 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 332
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 238 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 297
Query: 333 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 392
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 298 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 357
Query: 393 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 452
G+II+L TG+ +++ +K K +E IV++W FP LKA I+ECI K +G S
Sbjct: 358 GDIIDLRTGHSNADNWRVSKFK-------YENIVLIWNFPRKLKARGIKECICKAFGSAS 410
Query: 453 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 512
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 411 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 470
Query: 513 TYKEICSSTVSKVLFADQAKAVGIKWKTK 541
YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 471 AYKEICSSHVSEVMFSDQAETVGVKSRTR 499
>gi|78484000|dbj|BAE47489.1| polyA specific ribonuclease [Arabidopsis thaliana]
Length = 540
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 290/509 (56%), Positives = 381/509 (74%), Gaps = 10/509 (1%)
Query: 33 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 92
MDFLAKYQFDFN CIHEG+SYLSR +E++A K + + ++ +DS +E++ L +
Sbjct: 1 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 57
Query: 93 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 152
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 58 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 117
Query: 153 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 212
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 118 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 177
Query: 213 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 272
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 178 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 237
Query: 273 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 332
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 238 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 297
Query: 333 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 392
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 298 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 357
Query: 393 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 452
+II+L TG+ +++ +K K +E IV++W FP LKA I+ECI K +G S
Sbjct: 358 XDIIDLRTGHSNADNWRVSKFK-------YENIVLIWNFPRKLKARGIKECICKAFGSAS 410
Query: 453 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 512
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 411 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 470
Query: 513 TYKEICSSTVSKVLFADQAKAVGIKWKTK 541
YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 471 AYKEICSSHVSEVMFSDQAETVGVKSRTR 499
>gi|116310355|emb|CAH67368.1| OSIGBa0128P10.2 [Oryza sativa Indica Group]
Length = 702
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/533 (50%), Positives = 370/533 (69%), Gaps = 13/533 (2%)
Query: 5 GRHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
RHNFFIF R E D + +EFLCQTTS+DFLAKYQFDFN C EG+ YLSR QE++AL+
Sbjct: 105 ARHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQ 164
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNR--DEGSEV 122
+ + + +E+ ++ +E D L + D+LF ERMK + +EW ++ N+ D+
Sbjct: 165 KLYTLHNNETSAYPNTSEEEEDAPLKSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSE 224
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
F D QF+T+FFKMRPAI LNGFTSHQL LI+ ++R HF+DL Y+ E+ S+
Sbjct: 225 NFKFAD---QFQTVFFKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEK 281
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
+VY ++ DK LMK V+++ E +K+++G RHVIDLL+SE+KLIVGH+CFLDIA
Sbjct: 282 RVVYTDTNEDKISLMKNVREDLLKSREAKVKSAVGIRHVIDLLASERKLIVGHSCFLDIA 341
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
IYSKF GPLP + EEF S+N+ FPH+ DT+ L++ N +Q RM+ S SLS AFS+LC
Sbjct: 342 QIYSKFVGPLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLC 401
Query: 303 PQI-ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
P + A KS+ L PSV++EVE D+ S + SG KHEAGYDAFMTGCVF Q C++ G
Sbjct: 402 PALHAPDEKSSTL---PSVRIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHG 458
Query: 362 IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 421
I F+Q S E+LA N L++H+NLL W +G +++LSTG T A KR+ YP +
Sbjct: 459 IKFEQLSPLEDLATNINLKKHINLLPPCWNSGTVLDLSTG--TERPDAGYKRR--YPAAV 514
Query: 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLK 481
++ ++++WGF S ++ DI++CI KV+G SV SV+ +D TAV VQFS+ E V+ FLDLK
Sbjct: 515 YDNVILIWGFQSKVRPKDIKDCICKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLK 574
Query: 482 GSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
+L+ + ISVLHPL+ +LEGG T AA Y+TY++IC S+VSK FADQA+AV
Sbjct: 575 ATLESADSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAV 627
>gi|116309728|emb|CAH66773.1| OSIGBa0115M15.11 [Oryza sativa Indica Group]
Length = 703
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/532 (50%), Positives = 370/532 (69%), Gaps = 13/532 (2%)
Query: 6 RHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
RHNFFIF R E D + +EFLCQTTS+DFLAKYQFDFN C EG+ YLSR QE++AL+
Sbjct: 107 RHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQK 166
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNR--DEGSEVQ 123
+ + + +E+ ++ +E D L + D+LF ERMK + +EW ++ N+ D+
Sbjct: 167 LYTLHNNETSAYPNTSEEEEDAPLKSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSEN 226
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
F D QF+T+FFKMRPAI LNGFTSHQL LI+ ++R HF+DL Y+ E+ S+
Sbjct: 227 FKFAD---QFQTVFFKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKR 283
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+VY ++ DK LMK V+++ E +K+++G RHVIDLL+SE+KLIVGH+CFLDIA
Sbjct: 284 VVYTDTNEDKISLMKNVREDLLKSREAKVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQ 343
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
IYSKF GPLP + EEF S+N+ FPH+ DT+ L++ N +Q RM+ S SLS AFS+LCP
Sbjct: 344 IYSKFVGPLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCP 403
Query: 304 QI-ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+ A KS+ L PSV++EVE D+ S + SG KHEAGYDAFMTGCVF Q C++ GI
Sbjct: 404 ALHAPDEKSSTL---PSVRIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGI 460
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F+Q S E+LA N L++H+NLL W +G +++LSTG T A KR+ YP ++
Sbjct: 461 KFEQLSPLEDLATNINLKKHINLLPPCWNSGTVLDLSTG--TERPDAGYKRR--YPAAVY 516
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKG 482
+ ++++WGF S ++ DI++CI KV+G SV SV+ +D TAV VQFS+ E V+ FLDLK
Sbjct: 517 DNVILIWGFQSKVRPKDIKDCICKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKA 576
Query: 483 SLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
+L+ + ISVLHPL+ +LEGG T AA Y+TY++IC S+VSK FADQA+AV
Sbjct: 577 TLESADSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAV 628
>gi|242076112|ref|XP_002447992.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
gi|241939175|gb|EES12320.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
Length = 719
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/541 (49%), Positives = 375/541 (69%), Gaps = 6/541 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFFIF R+ELP D +++EFLCQTTS+DFLAKYQFDFN C EG+SYLSR QE++AL+
Sbjct: 131 HNFFIFPRKELPSDCSSHEFLCQTTSIDFLAKYQFDFNTCFREGISYLSRAQEEEALQKF 190
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N+ + ++ S + +E D L + DILF ERMK EW ++ + + +
Sbjct: 191 NTLHHGQTATSSTNSEEDGDIPLKSASDILFTERMKMNFKEWRDVIVSKPMVDNHLSVNI 250
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
QF+T+FFKMRPAI LNGF+SHQL LIQ V+RK+F+DL ++ GE+ S+ +VY
Sbjct: 251 KCGAGQFQTVFFKMRPAIMLNGFSSHQLKLIQQVLRKNFRDLVFVCTFGEDDTSEKKVVY 310
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+++ D+ +LMK+V+++Q + E +K++IG RHVIDLLSSE+KLI+GH+CFLDIA +YS
Sbjct: 311 SDTDEDRMLLMKDVQEDQLKNREERVKSAIGIRHVIDLLSSERKLIIGHSCFLDIAQVYS 370
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP + +EF S +K FPHI DT+ LL+ N +Q+ MK+ S SLS AFS+LCP A
Sbjct: 371 KFVGPLPSSIKEFALSFHKIFPHIADTRHLLSVNQAVQELMKQKSKSLSSAFSLLCP--A 428
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S + + V +EVE D+ SS++ SG KHEAGYDA+MTGC+FAQ C++LGI F+Q
Sbjct: 429 SYSSAEKASSHSPVTIEVEGDETTSSSFISGAKHEAGYDAYMTGCIFAQLCAYLGIKFEQ 488
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S ++LA N +L++H+N L SW +G +I+LSTG + YP +++ IV
Sbjct: 489 FSPLDDLATNTRLQKHINFLSPSWNSGTVIDLSTGMERPDP----GYMRRYPAAVYDNIV 544
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++WGF S ++ +I++CI KV+G SV +V+ +D TA VQF + E V+ FLDLK +L+R
Sbjct: 545 VIWGFMSKVRPKEIKDCICKVFGSGSVTTVFSIDSTAALVQFKKQESVNDFLDLKSALER 604
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
+ + +LHPL+ +LEGG T AA Y+TY++ICSS+ SK LFADQA+AV K + E+
Sbjct: 605 ADSAVLILHPLSTILEGGQTRAAKYDTYRDICSSSESKSLFADQAEAVCATSKNQFKENV 664
Query: 547 D 547
D
Sbjct: 665 D 665
>gi|293331279|ref|NP_001169499.1| uncharacterized protein LOC100383372 [Zea mays]
gi|224029697|gb|ACN33924.1| unknown [Zea mays]
gi|413918598|gb|AFW58530.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 693
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/541 (49%), Positives = 373/541 (68%), Gaps = 6/541 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFFIF R+ELP D +++EFLCQTTS++FLAKYQFDFN C EG+SYLSR QE++AL+
Sbjct: 123 HNFFIFPRKELPSDCSSHEFLCQTTSIEFLAKYQFDFNTCFREGISYLSRAQEEEALQKF 182
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N + ++ S + +E D L + DILF ERMK EW + + + +
Sbjct: 183 NMLHHGRTVTSSTNSEEDGDMPLKSASDILFTERMKMNFKEWRDAIASKPMVDNHLSGNI 242
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
QF+T+FFKMRPAI LNGF+SHQL LIQ V+RK+F+DL ++ GE+ S+ +VY
Sbjct: 243 KCGSGQFQTVFFKMRPAIILNGFSSHQLKLIQQVLRKNFRDLIFVCTFGEDDTSEKKVVY 302
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+++ D+ +LMK+V+++ + E IK++IG RHVIDLLSSE+KLIVGH+CFLDIA +YS
Sbjct: 303 SDTDEDRILLMKDVQEDLLKNREERIKSAIGIRHVIDLLSSERKLIVGHSCFLDIAQVYS 362
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF PLP + +EF S +K+FPHI DT+ L++ N +Q+ MK S SLS AF +LCP A
Sbjct: 363 KFVRPLPSSIKEFALSFHKFFPHIADTRHLMSVNQAVQKLMKHKSKSLSSAFLLLCP--A 420
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S + V +EVE D+ SS + SG KHEAGYDA+MTGC+FAQ C++LGI F+Q
Sbjct: 421 SYSSVEKPSSHSPVTIEVEGDETMSSRFISGAKHEAGYDAYMTGCIFAQLCAYLGIQFEQ 480
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S +NLA N KL++H+N L SW +G +++LSTG T + + + YP +++ IV
Sbjct: 481 FSPLDNLATNTKLQKHINFLSPSWNSGTVLDLSTGMETPDPGYTRR----YPAAVYDNIV 536
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++WGF S ++ +I++CI KV+G SV +V+ +D TA VQF + E V+ FLDLK L+R
Sbjct: 537 VIWGFLSKVRPKEIKDCICKVFGSGSVTTVFSIDSTAALVQFKKQESVNDFLDLKAVLER 596
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
+ IS+LHPL+ +LEGG T AA Y+TY++ICSS+ SK LFADQA+AV K +L+E+
Sbjct: 597 ADSAISILHPLSTILEGGQTRAAKYDTYRDICSSSESKYLFADQAEAVCATSKNQLIENV 656
Query: 547 D 547
D
Sbjct: 657 D 657
>gi|357167784|ref|XP_003581331.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 729
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/528 (49%), Positives = 366/528 (69%), Gaps = 8/528 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFFIF R+ELP D +++EFLCQTTS+DFLAKYQFDFN C HEG+SYLSR QE++AL+ +
Sbjct: 133 HNFFIFPRKELPDDISSHEFLCQTTSIDFLAKYQFDFNTCFHEGISYLSRAQEEEALQKL 192
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N Y D + S ++ +E D L + D+LF ERMK + EW ++ N +
Sbjct: 193 NVLYHD-GIASPNTSEE-EDVPLRSTADLLFTERMKIKFKEWRDVIISNPRMDNHWLECN 250
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
S QF+T+FFKM PAI LNGFTSHQL LIQ V+RK FKDL Y+ GE++ S+ +VY
Sbjct: 251 KFSTHQFQTVFFKMHPAILLNGFTSHQLKLIQQVLRKDFKDLMYISTFGEDNTSEKRVVY 310
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+ +D LMK+++++ E +K+++G RHVIDLL+SE+KLIVGH+CFLDIA +YS
Sbjct: 311 TDDSNDSVSLMKDLQEDLLRSREARVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQVYS 370
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP T +EF ++K P+I DT+ L++++ +Q M++ S SLS FS+LCP A
Sbjct: 371 KFIGPLPSTVKEFALGIHKILPYIADTRHLMSASDSVQYLMRQKSKSLSSVFSLLCP--A 428
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S + V++EVE D+ S + SG KHEAGYDAFMTGCVFAQ C HL + F+
Sbjct: 429 FHSTVAEPSTLSPVRIEVEADETMLSCFASGAKHEAGYDAFMTGCVFAQLCDHLDVKFEH 488
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
+NLA N KL++++NLL S+ +G ++LSTG ++ K YP +L++ +V
Sbjct: 489 LPPRDNLAMNNKLQKYINLLSPSFNSGTSLDLSTGMERPDT----GYKRRYPTVLYDNVV 544
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++WG+ S L+ DI++CI KV+GP SV +++ +D TAV VQFS+ E V+ F+DLK +L++
Sbjct: 545 LIWGYQSELRPRDIKDCICKVFGPASVTTIFSIDSTAVLVQFSKQESVNDFMDLKAALEK 604
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
+ ISVLHPL+ +LEGG T AA+Y+TY++IC S+VSK FADQA+AV
Sbjct: 605 TDSAISVLHPLSTILEGGKTRAANYDTYRDICGSSVSKYFFADQAEAV 652
>gi|413918597|gb|AFW58529.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 686
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/541 (48%), Positives = 366/541 (67%), Gaps = 13/541 (2%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFFIF R+ELP D +++EFLCQTTS++FLAKYQFDFN C E QE++AL+
Sbjct: 123 HNFFIFPRKELPSDCSSHEFLCQTTSIEFLAKYQFDFNTCFREA-------QEEEALQKF 175
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N + ++ S + +E D L + DILF ERMK EW + + + +
Sbjct: 176 NMLHHGRTVTSSTNSEEDGDMPLKSASDILFTERMKMNFKEWRDAIASKPMVDNHLSGNI 235
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
QF+T+FFKMRPAI LNGF+SHQL LIQ V+RK+F+DL ++ GE+ S+ +VY
Sbjct: 236 KCGSGQFQTVFFKMRPAIILNGFSSHQLKLIQQVLRKNFRDLIFVCTFGEDDTSEKKVVY 295
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+++ D+ +LMK+V+++ + E IK++IG RHVIDLLSSE+KLIVGH+CFLDIA +YS
Sbjct: 296 SDTDEDRILLMKDVQEDLLKNREERIKSAIGIRHVIDLLSSERKLIVGHSCFLDIAQVYS 355
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF PLP + +EF S +K+FPHI DT+ L++ N +Q+ MK S SLS AF +LCP A
Sbjct: 356 KFVRPLPSSIKEFALSFHKFFPHIADTRHLMSVNQAVQKLMKHKSKSLSSAFLLLCP--A 413
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S + V +EVE D+ SS + SG KHEAGYDA+MTGC+FAQ C++LGI F+Q
Sbjct: 414 SYSSVEKPSSHSPVTIEVEGDETMSSRFISGAKHEAGYDAYMTGCIFAQLCAYLGIQFEQ 473
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S +NLA N KL++H+N L SW +G +++LSTG T + + + YP +++ IV
Sbjct: 474 FSPLDNLATNTKLQKHINFLSPSWNSGTVLDLSTGMETPDPGYTRR----YPAAVYDNIV 529
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++WGF S ++ +I++CI KV+G SV +V+ +D TA VQF + E V+ FLDLK L+R
Sbjct: 530 VIWGFLSKVRPKEIKDCICKVFGSGSVTTVFSIDSTAALVQFKKQESVNDFLDLKAVLER 589
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS 546
+ IS+LHPL+ +LEGG T AA Y+TY++ICSS+ SK LFADQA+AV K +L+E+
Sbjct: 590 ADSAISILHPLSTILEGGQTRAAKYDTYRDICSSSESKYLFADQAEAVCATSKNQLIENV 649
Query: 547 D 547
D
Sbjct: 650 D 650
>gi|222629021|gb|EEE61153.1| hypothetical protein OsJ_15114 [Oryza sativa Japonica Group]
Length = 893
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/527 (49%), Positives = 360/527 (68%), Gaps = 16/527 (3%)
Query: 14 RQELPLDGAAYEF---LCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTY 70
+QE P A F + TTS+DFLAKYQFDFN C EG+ YLSR QE++AL+ + + +
Sbjct: 302 KQEDPGKAIAGLFGKDISPTTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLH 361
Query: 71 EDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNR--DEGSEVQPSFND 128
+E+ ++ +E D L + D+LF ERMK + +EW ++ N+ D+ F D
Sbjct: 362 NNETSAYPNTSEEEEDAPLKSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFAD 421
Query: 129 SKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 188
QF+T+FFKMRPAI LNGFTSHQL LI+ ++R HF+DL Y+ E+ S+ +VY +
Sbjct: 422 ---QFQTVFFKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKRVVYTD 478
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
+ DK LMK V+++ E +K+++G RHVIDLL+SE+KLIVGH+CFLDIA IYSKF
Sbjct: 479 TNEDKISLMKNVREDLLKSREAKVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKF 538
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI-AL 307
GPLP + EEF S+N+ FPH+ DT+ L++ N +Q RM+ S SLS AFS+LCP + A
Sbjct: 539 VGPLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAP 598
Query: 308 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQ 367
KS+ L PSV++EVE D+ S + SG KHEAGYDAFMTGCVF Q C++ GI F+Q
Sbjct: 599 DEKSSTL---PSVRIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQL 655
Query: 368 SSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVI 427
S E+LA N L++H+NLL W +G +++LSTG T A KR+ YP +++ +++
Sbjct: 656 SPLEDLATNINLKKHINLLPPCWNSGTVLDLSTG--TERPDAGYKRR--YPAAVYDNVIL 711
Query: 428 VWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRN 487
+WGF S ++ DI++CI KV+G SV SV+ +D TAV VQFS+ E V+ FLDLK +L+
Sbjct: 712 IWGFQSKVRPKDIKDCICKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESA 771
Query: 488 NDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
+ ISVLHPL+ +LEGG T AA Y+TY++IC S+VSK FADQA+AV
Sbjct: 772 DSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAV 818
>gi|218195015|gb|EEC77442.1| hypothetical protein OsI_16244 [Oryza sativa Indica Group]
Length = 931
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/527 (49%), Positives = 360/527 (68%), Gaps = 16/527 (3%)
Query: 14 RQELPLDGAAYEF---LCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTY 70
+QE P A F + TTS+DFLAKYQFDFN C EG+ YLSR QE++AL+ + + +
Sbjct: 340 KQEDPGKAIAGLFGKDISPTTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLH 399
Query: 71 EDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNR--DEGSEVQPSFND 128
+E+ ++ +E D L + D+LF ERMK + +EW ++ N+ D+ F D
Sbjct: 400 NNETSAYPNTSEEEEDAPLKSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFAD 459
Query: 129 SKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 188
QF+T+FFKMRPAI LNGFTSHQL LI+ ++R HF+DL Y+ E+ S+ +VY +
Sbjct: 460 ---QFQTVFFKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKRVVYTD 516
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
+ DK LMK V+++ E +K+++G RHVIDLL+SE+KLIVGH+CFLDIA IYSKF
Sbjct: 517 TNEDKISLMKNVREDLLKSREAKVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKF 576
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI-AL 307
GPLP + EEF S+N+ FPH+ DT+ L++ N +Q RM+ S SLS AFS+LCP + A
Sbjct: 577 VGPLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAP 636
Query: 308 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQ 367
KS+ L PSV++EVE D+ S + SG KHEAGYDAFMTGCVF Q C++ GI F+Q
Sbjct: 637 DEKSSTL---PSVRIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQL 693
Query: 368 SSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVI 427
S E+LA N L++H+NLL W +G +++LSTG T A KR+ YP +++ +++
Sbjct: 694 SPLEDLATNINLKKHINLLPPCWNSGTVLDLSTG--TERPDAGYKRR--YPAAVYDNVIL 749
Query: 428 VWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRN 487
+WGF S ++ DI++CI KV+G SV SV+ +D TAV VQFS+ E V+ FLDLK +L+
Sbjct: 750 IWGFQSKVRPKDIKDCICKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESA 809
Query: 488 NDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
+ ISVLHPL+ +LEGG T AA Y+TY++IC S+VSK FADQA+AV
Sbjct: 810 DSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAV 856
>gi|215697086|dbj|BAG91080.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 502
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/437 (50%), Positives = 304/437 (69%), Gaps = 13/437 (2%)
Query: 101 MKDRLSEWLGGLLRNR--DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQ 158
MK + +EW ++ N+ D+ F D QF+T+FFKMRPAI LNGFTSHQL LI+
Sbjct: 1 MKIKFNEWRNSIVSNQRVDDHRSENFKFAD---QFQTVFFKMRPAIMLNGFTSHQLKLIR 57
Query: 159 LVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGF 218
++R HF+DL Y+ E+ S+ +VY ++ DK LMK V+++ E +K+++G
Sbjct: 58 QILRTHFRDLVYVCTFLEDGVSEKRVVYTDTNEDKISLMKNVREDLLKSREAKVKSAVGI 117
Query: 219 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 278
RHVIDLL+SE+KLIVGH+CFLDIA IYSKF GPLP + EEF S+N+ FPH+ DT+ L++
Sbjct: 118 RHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMADTRHLMS 177
Query: 279 SNSILQQRMKKSSTSLSKAFSVLCPQI-ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG 337
N +Q RM+ S SLS AFS+LCP + A KS+ L PSV++EVE D+ S + SG
Sbjct: 178 VNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTL---PSVRIEVEADETVLSCFTSG 234
Query: 338 VKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIIN 397
KHEAGYDAFMTGCVF Q C++ GI F+Q S E+LA N L++H+NLL W +G +++
Sbjct: 235 AKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLEDLATNINLKKHINLLPPCWNSGTVLD 294
Query: 398 LSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVY 457
LSTG T A KR+ YP +++ ++++WGF S ++ DI++CI KV+G SV SV+
Sbjct: 295 LSTG--TERPDAGYKRR--YPAAVYDNVILIWGFQSKVRPKDIKDCICKVFGRASVTSVF 350
Query: 458 HVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEI 517
+D TAV VQFS+ E V+ FLDLK +L+ + ISVLHPL+ +LEGG T AA Y+TY++I
Sbjct: 351 PIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAAKYDTYRDI 410
Query: 518 CSSTVSKVLFADQAKAV 534
C S+VSK FADQA+AV
Sbjct: 411 CRSSVSKFSFADQAEAV 427
>gi|8778305|gb|AAF79314.1|AC002304_7 F14J16.11 [Arabidopsis thaliana]
Length = 660
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/401 (54%), Positives = 285/401 (71%), Gaps = 19/401 (4%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFF+F RQEL D A+EFLCQTTSMDFLAKYQ +E++A K +
Sbjct: 183 HNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQ----------------REEEEASKRL 226
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ ++ +DS +E++ L + D+LFA RM+ L+EW GLL + SE
Sbjct: 227 KMLHGEDGIDSSGETEELK---LVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRIS 283
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
N S Q ET+F MRPA+SL GFTSHQL ++ V+RKHF DL Y+ + ++S S++++VY
Sbjct: 284 NGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVY 343
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+S+SDK+ LMKE KDE+K AE I+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YS
Sbjct: 344 TDSDSDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYS 403
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP TAE+F++S+N +FP+I+DTKILLN N +L QRMKKSSTSLS AFS LCPQI
Sbjct: 404 KFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIE 463
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S+S+ LQ V ++VE+D++R SNWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ
Sbjct: 464 FSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQ 523
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSES 407
S ++ A NEKL +++N LYLSWT + + R ES
Sbjct: 524 HSQLDDFAQNEKLEKYINRLYLSWTRELVWDFLALKRQLES 564
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 63/78 (80%), Gaps = 1/78 (1%)
Query: 464 VFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVS 523
+++ ++R E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE YKEICSS VS
Sbjct: 543 LYLSWTR-ELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAYKEICSSHVS 601
Query: 524 KVLFADQAKAVGIKWKTK 541
+V+F+DQA+ VG+K +T+
Sbjct: 602 EVMFSDQAETVGVKSRTR 619
>gi|57834081|emb|CAE05998.4| OSJNBa0016O02.8 [Oryza sativa Japonica Group]
Length = 622
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 210/528 (39%), Positives = 303/528 (57%), Gaps = 73/528 (13%)
Query: 14 RQELPLDGAAYEFLCQTTSMDFLAKYQ-----FDFNACIHEGVSYLSREQEDKALKHVNS 68
R L LD A +L S + A Q F ++ V++ ++E+E AL+ + +
Sbjct: 86 RDTLGLDRADVRYLKLRDSAERFAALQLGVCPFRWDPAKSAFVAHPTQEEE--ALQKLYT 143
Query: 69 TYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNR--DEGSEVQPSF 126
+ +E+ ++ +E D L + D+LF ERMK + +EW ++ N+ D+ F
Sbjct: 144 LHNNETSAYPNTSEEEEDAPLKSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKF 203
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
D QF+T+FFKMRPAI LNGFTSHQL LI+ ++R HF+DL Y+ E+ S+ +VY
Sbjct: 204 AD---QFQTVFFKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKRVVY 260
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++ DK LMK V+++ E +K+++G RHVIDLL+SE+KLIVGH+CFLDIA IYS
Sbjct: 261 TDTNEDKISLMKNVREDLLKSREAKVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYS 320
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP + EEF S+N+ FPH+ DT+ L++ N +Q R S LS LC
Sbjct: 321 KFVGPLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRYLASLQVLS--MKQLC---- 374
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
+ H G+K E Q
Sbjct: 375 ----AYH-----------------------GIKFE------------------------Q 383
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S E+LA N L++H+NLL W +G +++LSTG T A KR+ YP +++ ++
Sbjct: 384 LSPLEDLATNINLKKHINLLPPCWNSGTVLDLSTG--TERPDAGYKRR--YPAAVYDNVI 439
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++WGF S ++ DI++CI KV+G SV SV+ +D TAV VQFS+ E V+ FLDLK +L+
Sbjct: 440 LIWGFQSKVRPKDIKDCICKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLES 499
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
+ ISVLHPL+ +LEGG T AA Y+TY++IC S+VSK FADQA+AV
Sbjct: 500 ADSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAV 547
>gi|302807724|ref|XP_002985556.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
gi|300146762|gb|EFJ13430.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
Length = 603
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 170/557 (30%), Positives = 278/557 (49%), Gaps = 78/557 (14%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKA---L 63
+NF +F R EL ++ A +FLCQ TS++FLAK+QFDFNACI++G+SYLS EQE A L
Sbjct: 87 YNFCLFPRHELQIEMPARDFLCQATSLEFLAKHQFDFNACIYDGISYLSHEQEKLARHKL 146
Query: 64 KHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQ 123
K ++ L+S+ +L + L D++F+E ++ + EW +L+ + E +
Sbjct: 147 KLTDADGAPRELESFSAL----EIPLNRTADVIFSESVRVQAGEWRDKVLQREKDAHEPE 202
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
R + + +H+ L+ V+RK F+DL E+ +
Sbjct: 203 E----------------RLCLVVEVAGNHEANLVHQVLRKSFQDLVPFT---EDGAKKVK 243
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I++ S ++ +L+ + + +++ E I +IGFR +ID L KK +VGHNCFLDIAH
Sbjct: 244 ILFPRSVKERALLVGQWEKDRRSRLENQIMDAIGFRQLIDALVESKKPVVGHNCFLDIAH 303
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
IY+KFF LPL+ EF SS++++FP I DTK LL ++S Q+ + K T+L FS
Sbjct: 304 IYNKFFATLPLSCSEFCSSIHQHFPCIFDTKYLLKADSAAQEMLGKGGTTLGPVFS---- 359
Query: 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-SGVKHEAGYDAFMTGCVFAQACSHLGI 362
++ P+ KV++E ++ + +KHEAGYDA+MT VFA C + +
Sbjct: 360 ---------NVGKLPN-KVQIEFGSSSLCRYDGTEMKHEAGYDAYMTAAVFANICQFMKM 409
Query: 363 DFKQ-----QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGN--------RTSESLA 409
D + + E L H N LYL W +++LSTG ++S S+
Sbjct: 410 DPANLPSLCEQAKEGEEERSGLGSHANHLYLGWRGHFVLDLSTGQEATGPRSLKSSRSIE 469
Query: 410 SNKRKNHYPKILFECIVIVWGFPS---------HLKAWDIRECISKVYGPTSVISVYHVD 460
K K+ + ++WG S L+A D++ C + P + V +D
Sbjct: 470 REKAKS---------VALMWGSGSTRSLEVDSRSLEA-DVKACFTAKSPPH--VEVVRID 517
Query: 461 ETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSS 520
E++ FV F R E + + ++D + V + G A YE ++++C S
Sbjct: 518 ESSAFVVFRRKESLESLVQ-AFECSGHHDKVGVCDVSGLVARGWKI--ARYEFFEKLCES 574
Query: 521 TVSKVLFADQAKAVGIK 537
+S D ++ ++
Sbjct: 575 PLSTAKLTDAVTSMHLQ 591
>gi|302810647|ref|XP_002987014.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
gi|300145179|gb|EFJ11857.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
Length = 603
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/551 (30%), Positives = 272/551 (49%), Gaps = 82/551 (14%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL ++ A +FLCQ TS++FLAK+QFDFNACI++G+SYLS EQE A +
Sbjct: 87 YNFCLFPRHELQIEMPARDFLCQATSLEFLAKHQFDFNACIYDGISYLSHEQEKLARHKL 146
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIP-----DILFAERMKDRLSEWLGGLLRNRDEGSE 121
T D+ + +E+ + IP D++F+E ++ + EW +L+ + E
Sbjct: 147 KLT------DADGAPRELESFSVLEIPLNRTADVIFSESVRVQAGEWRDKVLQREKDAQE 200
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ R + + +H+ L+ V+RK F+DL E+ +
Sbjct: 201 PEE----------------RLCLVVEVAGNHEANLVHQVLRKSFQDLVPFT---EDGAKK 241
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
I++ S ++ +L+ + + +++ E I ++GFR +ID L KK +VGHNCFLDI
Sbjct: 242 VKILFSRSVKERALLVGQWEKDRRSRLENQIMDAVGFRQLIDTLVESKKPVVGHNCFLDI 301
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
AHIYSKFF LPL+ EF SS++++FP I DTK LL ++S Q+ + K T+L FS
Sbjct: 302 AHIYSKFFATLPLSCSEFCSSIHQHFPCIFDTKYLLKADSAAQEMLGKGGTTLGPVFS-- 359
Query: 302 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-SGVKHEAGYDAFMTGCVFAQACSHL 360
++ P+ KV +E ++ + +KHEAGYDA+MT VFA C +
Sbjct: 360 -----------NVGKLPN-KVPIEFGSSNLCRYDGTEMKHEAGYDAYMTAAVFANICQFV 407
Query: 361 GIDFKQ-----QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGN--------RTSES 407
+D + + E L H N LYL W +++LSTG ++S S
Sbjct: 408 KMDPANLPSLCEQAKEGEEERSGLGSHANHLYLGWRGHFVLDLSTGQEATGPRSLKSSRS 467
Query: 408 LASNKRKNHYPKILFECIVIVWGFPS---------HLKAWDIRECISKVYGPTSVISVYH 458
+ K K+ + ++WG S L+A D++ C + P + V
Sbjct: 468 IEREKAKS---------VALMWGSGSTRSSEVDSRSLEA-DVKACFTAKSPPH--VEVVR 515
Query: 459 VDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEIC 518
+DE++ FV F R E + + ++D + V + G A YE ++++C
Sbjct: 516 IDESSAFVVFRRKESLESLVQ-AFECSGHHDKVGVCDVSGLVARGWKI--ARYEFFEKLC 572
Query: 519 SSTVSKVLFAD 529
S +S D
Sbjct: 573 ESPLSTAKLTD 583
>gi|168026131|ref|XP_001765586.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683224|gb|EDQ69636.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 487
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 229/415 (55%), Gaps = 40/415 (9%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFFIF R EL L+ A F QTTS++FL K++FDFNACI++G+SYLS EQE A +
Sbjct: 93 YNFFIFPRNELQLELPARSFFAQTTSLEFLTKHRFDFNACIYDGISYLSHEQEAVARVLM 152
Query: 67 NSTYEDESLDSW-HSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPS 125
S ++ S H+ EI L D+ F E+++ ++ W LL NR
Sbjct: 153 GSVSVKQNFPSGVHNSSEI---PLTKPGDVAFVEKIRTQIGRWRDELLFNR--------- 200
Query: 126 FNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYL---RVSGENSCSQN 182
Q+++ + +RP+++++ + +Q L+Q +++ HF DL R +G + +
Sbjct: 201 -----QKWQVVNENLRPSLNIDVTSHYQSRLVQQIIKTHFPDLVAAVNARGNGPHDRIRI 255
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
++Y+ + D +++E+ DE++ E + ++GFR V+D ++ +VGHNC LD+
Sbjct: 256 RVIYVSPKEDMSKVIQELADEERNALETRVSNAVGFRKVLDAIAEAGLPVVGHNCILDMT 315
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
HIYSKF GPLP T+ EF SS+ + FP +IDTK LL + L+ + STSL+ F+ +C
Sbjct: 316 HIYSKFVGPLPATSAEFSSSLRQQFPCVIDTKYLLRAEPTLRGILASRSTSLAVVFTHIC 375
Query: 303 PQIALGSKST--------HLALQPSVKVEVEVDD---IRSSNWNSGVKHEAGYDAFMTGC 351
A + ++ + KV VEV + ++G+KHEAG+DA+MTG
Sbjct: 376 QVFADKAVASGRFYFGKGKILNNAFTKVAVEVAEEFQRYGGTKDTGLKHEAGFDAYMTGS 435
Query: 352 VFAQACSHLGIDFKQQSSSENLAHNEKLRE-----HVNLLYLSWTNGEIINLSTG 401
VFAQAC L +D ++ + K+ E + NLL L W +++L+TG
Sbjct: 436 VFAQACHLLHVD---AATIRKIPDAVKVGEQGFASYANLLALGWVGNMVLDLTTG 487
>gi|302772366|ref|XP_002969601.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
gi|300163077|gb|EFJ29689.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
Length = 648
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 162/534 (30%), Positives = 266/534 (49%), Gaps = 37/534 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F R EL L+ +FLCQT+S++FLAK+ FDFNACI+ G+SYLSR++E K +
Sbjct: 117 NFFLFPRNELVLE---RDFLCQTSSLEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLA 173
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
EDE + + + D++F+ER++ ++ W + + + + + S
Sbjct: 174 KKGEDE----------LPEVSMRKTSDLIFSERVRLQVGLWRASKIMAKHKAKQEESSGR 223
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
S E P++ +N Q L+ V +F DL + E +Q ++Y
Sbjct: 224 SSMPDDEAPL----PSLVINVSDKRQAKLVLKAVSSNFDDLVPMIEGNEKEATQVKVIYT 279
Query: 188 ESESDKKMLMKEVKDEQKID-AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S S+ K+ ++ D+ K+D E + ++GFR VID +S KK IVGHNC LD+AHIY+
Sbjct: 280 GS-SEHKIALQADLDKAKLDLMEYDVMEAVGFRQVIDAISESKKPIVGHNCVLDLAHIYN 338
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP F + +++ FP +IDTK +L +L R S+TSL +S + A
Sbjct: 339 KFIGPLPDNYSGFCNVIHELFPAVIDTKYMLK---VL--RTSISTTSLYPVYSYYFGEDA 393
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
K+T + +V VE+ D ++ +KHEAG+DA+MTG +FAQ + + +
Sbjct: 394 --KKNTKMKAHSTVNVEIA--DGFHKYSDAELKHEAGFDAYMTGAIFAQLWRTVVSNPTE 449
Query: 367 --QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYP-KILFE 423
S + L + E NLLY+ W +++L TG S A +R+++ + +
Sbjct: 450 FYALSKKILRGTHAISEFSNLLYMGWAGHFVLDLKTGKEAKGSKALPERESYSARRPASD 509
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPT---SVISVYHVDETAVFVQFSRAEMVSKFLDL 480
VIVW + +++ + + T S + V V E A F+ F +F
Sbjct: 510 AAVIVWSQDPVGSSRQLQKLVKSCFEETQFSSEVEVIPVSENAAFLAFKSLRSSEEFSQA 569
Query: 481 KGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
S+ N L+ +A L A + T++++C S +S D +++
Sbjct: 570 LESIKTNRKK---LNTIAARLSSSGLQGARFGTFEKLCKSELSTFNIGDAIQSI 620
>gi|302774905|ref|XP_002970869.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
gi|300161580|gb|EFJ28195.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
Length = 648
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 160/534 (29%), Positives = 264/534 (49%), Gaps = 37/534 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F R EL L+ +FLCQT+S++FLAK+ FDFNACI+ G+SYLSR++E K +
Sbjct: 117 NFFLFPRNELVLE---RDFLCQTSSLEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLA 173
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
EDE + + + D++F+ER++ ++ W + + + + + S
Sbjct: 174 KKGEDE----------LPEVSMRKTSDLIFSERVRLQVGLWRASKIMAKHKAKQEESSGR 223
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
S E P++ +N Q L+ V +F DL + E +Q ++Y
Sbjct: 224 SSMPDDEAPL----PSLVINVSDKRQAKLVLKAVSSNFDDLVPMIEDNEKEATQVKVIYT 279
Query: 188 ESESDKKMLMKEVKDEQKID-AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S S+ K+ ++ D+ K+D E + ++GFR VID +S KK IVGHNC LD+AHIY+
Sbjct: 280 GS-SEHKIALQADLDKAKLDLMECDVMEAVGFRQVIDAISESKKPIVGHNCVLDLAHIYN 338
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP F + +++ FP +IDTK +L +L R S+TSL +S + A
Sbjct: 339 KFIGPLPDNYSGFCNVIHELFPAVIDTKYMLK---VL--RTSISTTSLYPVYSYYFGEDA 393
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
+ T + V VE+ D ++ +KHEAG+DA+MTG +FAQ + + +
Sbjct: 394 KKNTKT----KAHSTVNVEIADGFHKYSDAELKHEAGFDAYMTGAIFAQLWRTVVSNPTE 449
Query: 367 --QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYP-KILFE 423
S + L + E NLLY+ W +++L TG S A +R+++ + +
Sbjct: 450 FYALSKKILRGTHAISEFSNLLYMGWAGHFVLDLKTGKEAKGSKALPERESYSARRPASD 509
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPT---SVISVYHVDETAVFVQFSRAEMVSKFLDL 480
VIVW + +++ + + T S + V V E A F+ F +F
Sbjct: 510 AAVIVWSQDPVGSSRQLQKLVKSCFEETQFSSEVEVIPVSENAAFLAFKSLRSSEEF--- 566
Query: 481 KGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 534
+L+ L+ +A L A + T++++C S +S D +++
Sbjct: 567 SQALESIKTKRKKLNTIAARLSSSGLEGARFGTFEKLCKSELSTFNIGDAIQSI 620
>gi|224136934|ref|XP_002326981.1| predicted protein [Populus trichocarpa]
gi|222835296|gb|EEE73731.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 140/525 (26%), Positives = 240/525 (45%), Gaps = 71/525 (13%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL ++ +Y F CQT+S+ +A+ FDFN+CI++G+SYLSREQE A +
Sbjct: 114 YNFHLFPRAELKMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESTAKIQM 173
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGL--LRNRDEGSEVQP 124
+ +++ T ++ D +F ER+K + W R EG+++Q
Sbjct: 174 GNPILAKNV--------TESTSTLSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQD 225
Query: 125 SFNDS--KQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+ S K + RP ++++ + Q L+ ++++ D+ L + + Q
Sbjct: 226 ALVRSLRKLVLGNEEYDSRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQA 285
Query: 183 V-IVYIESESDKKMLMKEVK-DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V +V S+ DK +L +++ DEQ++ ++ GFR VIDL+S+ +K +V H D
Sbjct: 286 VRVVLTSSKEDKDLLQGKLQNDEQELKKKVR-----GFREVIDLISASQKPVVSHGSLND 340
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ I+SKF PLP T +EF+ S+ FP +ID L+ S L++ TS+ A S
Sbjct: 341 LTVIHSKFIAPLPPTVDEFMCSLRLAFPLVIDVNHLMKEISPLRK-----VTSIPVAISQ 395
Query: 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
L + P + +E+ + N H G + +FA+ CS L
Sbjct: 396 L----------KNRFFTP-IDMEIPCQAME----NEDTIH--GQNVVKICELFARLCSIL 438
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWT------NGEIINLSTGNRTSESLASNKRK 414
ID S E + L + N+ T +GEI + RT
Sbjct: 439 KIDPAAVKSDEEKGAS-ALEAYANIFSPFCTASEEPIDGEIKIWTNNTRT---------- 487
Query: 415 NHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV-ISVYHVDETAVFVQFSRAEM 473
+ E +V +WGF + A ++ + + + S V VD + V F + +
Sbjct: 488 -----VSCEDMVFLWGFGDRVTAGILKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQHGL 542
Query: 474 VSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEIC 518
FL+ ++++ +D + PL +++ G AA YETY C
Sbjct: 543 TETFLN---TMNKCSD---MRGPLREMVSEGLR-AAGYETYNRAC 580
>gi|255572662|ref|XP_002527264.1| ribonuclease, putative [Ricinus communis]
gi|223533357|gb|EEF35108.1| ribonuclease, putative [Ricinus communis]
Length = 624
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 138/516 (26%), Positives = 233/516 (45%), Gaps = 59/516 (11%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL +Y F C T+ + + + FDFNAC+++G+SYLSR QE A +
Sbjct: 116 YNFHLFPRDELNSGMPSYSFSCHTSYLTKMVQEGFDFNACVNDGISYLSRAQESAARVRM 175
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ + + + + T + D +F +R + R+ W + S
Sbjct: 176 KNPFLAKDI--------VESTSTPGVADSVFVQRTRSRVKNWKNACTDTSSTDEALVKSL 227
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IV 185
E + RP I+++ + Q+ L+ ++++ DL L V + +Q V +V
Sbjct: 228 RKLVLGLEE--YNSRPCINIDVCSERQVHLVIEMLQEFADDLVPLIVPAKGGGTQAVRVV 285
Query: 186 YIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
S+ D+ +L E+ Q ++ E + K GFR VIDL+S +K +V HN D+A I+
Sbjct: 286 LTSSKEDRDLLQMEL---QNLEDEQNKKIR-GFREVIDLISGSEKPVVSHNSLNDLAFIH 341
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 305
SKF PLP + EEF S+ FP +ID L+ S L K T++ A S L
Sbjct: 342 SKFLAPLPPSMEEFTCSLRLVFPQVIDVNHLMKEISPL-----KKVTNIPMATSYL---- 392
Query: 306 ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFK 365
K+ A V +E+ + N G H G++ +FA+ C L +
Sbjct: 393 ----KNWFFA---PVDMEIPFPAMV----NEGKIH--GHNVMRICQLFAKLCYILKLAPN 439
Query: 366 Q-QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFEC 424
QS+ +NLA + +VN+ + + + +N R K+ +
Sbjct: 440 SIQSNEKNLA--SAIEAYVNIFSPYFPGPQ----EPTDEDVRIWTNNTR-----KVSCQD 488
Query: 425 IVIVWGFPSHLKAWDIRECISKVYGPTS-VISVYHVDETAVFVQFSRAEMVSKFLD-LKG 482
+V +WGF + A ++ + + + S V VD++ V F + + LD LKG
Sbjct: 489 LVFLWGFRYRMSAGMLKSLLQQSHKVFSEEFDVRFVDKSCAIVVFWEPGLSNTLLDVLKG 548
Query: 483 SLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEIC 518
S + ++ PL +++ G AASY+TY +C
Sbjct: 549 SSE-------IVGPLREMVSEG-VRAASYDTYNRVC 576
>gi|356527283|ref|XP_003532241.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 619
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 141/526 (26%), Positives = 243/526 (46%), Gaps = 76/526 (14%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R E+ + Y F CQT+ + +A+ FDFNAC++ G+SYLSR QE A +
Sbjct: 108 YNFMLFPRDEMKMGMPTYSFSCQTSLLASMARQGFDFNACVYNGISYLSRAQESAARIRL 167
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLL-----RNRDEGSE 121
+ SL+ ++ + + D +F ER++ ++ W ++RDE E
Sbjct: 168 GTALP--------SLRVMKSSSPSTVADTVFVERIRSKVKYWRESCKSSDTNKSRDE--E 217
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ S + E F+ RP ++++ + Q+ LI +V + DL L + ++
Sbjct: 218 LVNSLRNIVLGNEQ--FRSRPCMTVDVCSERQVQLILEMVLDYSDDLLPLPIPTKSGTIH 275
Query: 182 NV-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V IV S+ DK +L +E+++ ++ ++ K GFR VIDL+S+ +K ++ HNC D
Sbjct: 276 AVRIVLANSKEDKDLLERELRNLEEEES----KKIRGFREVIDLISASQKPVISHNCLND 331
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
I+SKF PLP +EF+SS+ FP ++D L+ + +++ T++ A S
Sbjct: 332 CTLIHSKFIAPLPPEIDEFVSSLCSVFPEVLDINYLMKKHGTMRK-----VTNIPSAISY 386
Query: 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
L + H V++E+ D + G H G A +F + CS L
Sbjct: 387 L---------NNHFF----APVDLEIPD--QATVKEGKIH--GLTALRLSYLFMKLCSIL 429
Query: 361 GIDFK-QQSSSENLAHNEKLREHVNLLYLSWT------NGEIINLSTGNRTSESLASNKR 413
I +S +++LA +L + N+ + T NG + + T N
Sbjct: 430 KISPNVTESGNKHLA--PELEDFTNVFHPFSTPIQDSFNGGDVGMWTNNTK--------- 478
Query: 414 KNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV-ISVYHVDETAVFVQFSRAE 472
K+ E +V +WGF + A ++ + + S V VD++ V F ++
Sbjct: 479 -----KVSCEHLVFLWGFKIGITAGMLKSLLRSSHDIFSREFDVKLVDKSCAIVVFWQSG 533
Query: 473 MVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEIC 518
+ +FLD+ S + D L +L+ G SYETY IC
Sbjct: 534 VSKRFLDILNSEEIRGD-------LKELVSDGMR-VTSYETYNTIC 571
>gi|357141478|ref|XP_003572239.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 596
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 195/428 (45%), Gaps = 54/428 (12%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL L +Y F CQT+ +A+ FDFN CI++G+SYLSR QE A + +
Sbjct: 94 YNFHLFPRDELQLGMPSYSFSCQTSYFSSMARDGFDFNMCIYDGISYLSRVQESLARQKI 153
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLR--NRDEGSEVQP 124
+ L++ + + D +F R+K R+ W G +GS V
Sbjct: 154 FIPH----------LRQPSPSPSTTVADSVFTTRIKSRIQHWRKGYAEPSKTADGSLVN- 202
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV- 183
+ K + RP++S++ + Q+ L+ + + DL L V + S+ V
Sbjct: 203 --SLRKLILGGESYGSRPSMSIDVCSDRQVQLVLETINRVSDDLVPLVVPDKAGMSRAVR 260
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+++ SE DK +L+ ++ QK++ E S+K GFR VIDLLSS +K I+ +NC D+
Sbjct: 261 VIFTSSEEDKNLLLMDI---QKLEDEHSVKFR-GFREVIDLLSSSQKPIISYNCLNDLTM 316
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
I++KF GPLP EF S+ F ++D L L +++ ++ A S
Sbjct: 317 IHTKFIGPLPPNMHEFTCSLRMVFSSVVDVGHLWREIGPL-----RNAKNIQAALS---- 367
Query: 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L Q V +E+E+ + NS K G + +FA+ L I
Sbjct: 368 ---------YLQRQYFVPMEIEIP--QQDGTNSVTK--GGENVLRITKLFAKLSMLLKIS 414
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
K QS S H + + N+ Y GE S+ + K + + +
Sbjct: 415 PKHQSQSGEQHHT--VEDFCNIFYPGCMAGE----------SDDVDCTKEPDITRTVSTD 462
Query: 424 CIVIVWGF 431
++ +WGF
Sbjct: 463 SVIFLWGF 470
>gi|449502106|ref|XP_004161545.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Cucumis sativus]
Length = 610
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 140/521 (26%), Positives = 249/521 (47%), Gaps = 66/521 (12%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL + +Y F CQ + + +A+ FDF A +++G+SYLSR QE A +
Sbjct: 107 YNFHLFPRDELNIGMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQM 166
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
S ++++ ++ + ++ D +F +R+K R+ W D S+ +
Sbjct: 167 GSQTLPPNINA------VKPSSELSVADTIFVQRVKSRVKNWKDAY----DSSSKTSDAL 216
Query: 127 NDSKQQF--ETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+ ++ + + RP+I ++ ++ Q+LL+ ++++ DL + +S + +Q V
Sbjct: 217 LSTLKKLIVGSEQYGSRPSIVIDVYSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVR 276
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
+ S + K+L++ K+ Q ++ + + K GFR VID++S+ +K IV +N D I
Sbjct: 277 AILTSSKEDKILLE--KELQYLEDKENKKFR-GFREVIDVISASQKPIVSYNSLHDFTFI 333
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+SKF PLP + +E+ SS++ FP + D K L++ L + M S++ A+S L
Sbjct: 334 HSKFLAPLPTSIDEYASSLHSVFPRVHDVKHLMSKIGGLSKPM-----SIAAAYSYL--- 385
Query: 305 IALGSKSTHLALQPS-VKVEVEVDDIRSSNWNSGVKHEA-GYDAFMTGCVFAQACSHLGI 362
K+ + A PS + + VE G H+ G++A +FAQ CS L I
Sbjct: 386 -----KNXYYA--PSYLDIPVEA---------PGNDHKPHGHNAIRLCHLFAQVCSVLKI 429
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
D S++N L E N+ S + + + A R K+
Sbjct: 430 DLSGVQSNDNECLASMLDECSNVSSFS-----PYHCKPKDEDVKIWAQGVR-----KVSC 479
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSV----ISVYHVDETAVFVQFSRAEMVSKFL 478
+V +WG L A R + + G V V VD+ V FS+ ++ FL
Sbjct: 480 RHLVFLWGLREGLTA---RLLKASLEGTHEVFCEEFDVRFVDKKCAIVVFSQPDLSETFL 536
Query: 479 DLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICS 519
D +++ +N ++ L +++ G AA YETYK+ICS
Sbjct: 537 D---AINSDN----IVGSLREMVSEGLR-AAGYETYKKICS 569
>gi|449462471|ref|XP_004148964.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 610
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 138/520 (26%), Positives = 245/520 (47%), Gaps = 64/520 (12%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL + +Y F CQ + + +A+ FDF A +++G+SYLSR QE A +
Sbjct: 107 YNFHLFPRDELNIGMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQM 166
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
S ++++ ++ + ++ D +F +R+K R+ W D S+ +
Sbjct: 167 GSQTLPPNINA------VKPSSELSVADTIFVQRVKSRVKNWKDAY----DSSSKTSDAL 216
Query: 127 NDSKQQF--ETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+ ++ + + RP+I ++ ++ Q+LL+ ++++ DL + +S + +Q V
Sbjct: 217 LSTLKKLIVGSEQYGSRPSIVIDVYSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVR 276
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
+ S + K+L++ K+ Q ++ + + K GFR VID++S+ +K IV +N D I
Sbjct: 277 AILTSSKEDKILLE--KELQYLEDKENKKFR-GFREVIDVISASQKPIVSYNSLHDFTFI 333
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+SKF PLP + +E+ SS++ FP + D K L++ L + M S++ A+S L Q
Sbjct: 334 HSKFLAPLPTSIDEYASSLHSVFPRVHDVKHLMSKIGGLSKPM-----SIAAAYSYLKKQ 388
Query: 305 IALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEA-GYDAFMTGCVFAQACSHLGID 363
S + + VE G H+ G++A +FAQ CS L ID
Sbjct: 389 YYAPSY---------LDIPVEA---------PGNDHKPHGHNAIRLCHLFAQVCSVLKID 430
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
S++N L E N+ S + + + A R K+
Sbjct: 431 LSGVQSNDNECLASMLDECSNVSSFS-----PYHCKPKDEDVKIWAQGVR-----KVSCR 480
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSV----ISVYHVDETAVFVQFSRAEMVSKFLD 479
+V +WG L A R + + G V V VD+ V FS+ ++ FLD
Sbjct: 481 HLVFLWGLREGLTA---RLLKASLEGTHEVFCEEFDVRFVDKKCAIVVFSQPDLSETFLD 537
Query: 480 LKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICS 519
+++ +N ++ L +++ G AA YETYK+ICS
Sbjct: 538 ---AINSDN----IVGSLREMVSEGLR-AAGYETYKKICS 569
>gi|242079291|ref|XP_002444414.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
gi|241940764|gb|EES13909.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
Length = 599
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 135/521 (25%), Positives = 245/521 (47%), Gaps = 76/521 (14%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL L +Y F CQ++ + +A FDFN CI++G+SYLSR QE A + +
Sbjct: 97 YNFHLFPRDELQLGMPSYSFSCQSSYLSTMANDGFDFNMCIYDGISYLSRVQESLARQKI 156
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLL--RNRDEGSEVQP 124
++ + L S + ++ D +F R+K ++ W G +D+GS V
Sbjct: 157 FTSRPQQLLPSPST----------SVSDSVFVNRIKSKILHWRKGYADPSKKDDGSLVS- 205
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV- 183
S + ET + RP++S++ + Q+ L+ V + DL L V + ++ V
Sbjct: 206 SLSRLILGGET--YGSRPSMSIDVCSDRQVQLVLEAVNQISDDLVSLVVPHKAGAARFVR 263
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+++ S+ DK +L+ ++ QK++ E + K GFR VIDLLSS +K I+ +NC D+
Sbjct: 264 VIFTNSKEDKNLLLMDI---QKLEDEQNFKFR-GFREVIDLLSSSQKPIISYNCLNDMTM 319
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
++SKF PLP EF+ S+ F +++D + + L KA ++
Sbjct: 320 LHSKFIAPLPPNMHEFLCSLKMVFSNVVDIS-----------HLWRQIGPLRKAKNI--- 365
Query: 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
Q AL ++L Q V +E+E+ + +S K+E + +FA+ + L I
Sbjct: 366 QAAL----SYLQRQYCVPIEIEIP--QQDGTSSVTKNEK--NVLRITKLFAKLSNLLKIS 417
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWT--NGEIINLSTGNRTSESLASNKRKNHYPKIL 421
+ Q S + E+ N+ Y S + N + + T+E ++++
Sbjct: 418 PECQLQSHE--QCTAVEEYCNIFYPSCVVEGSDDANFAIESDTTEIVSTDN--------- 466
Query: 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVIS----VYHVDETAVFVQFSRAEMVSKF 477
I+ +WGF + ++E + G S V +D+T + F + ++
Sbjct: 467 ---IIFLWGF----REKSVKELKPYLIGLHQAFSEDFEVKLLDKTCSALIFRDSNTATQL 519
Query: 478 LDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEIC 518
L + N++ S+ L++ L+ AA +E Y+++C
Sbjct: 520 LK-----EINSEGPSLNRFLSEGLK-----AAGFEVYRKVC 550
>gi|15230837|ref|NP_189170.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
gi|75162449|sp|Q8W4C3.1|PARNL_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN-like; AltName:
Full=Polyadenylate-specific ribonuclease-like protein
gi|17065176|gb|AAL32742.1| Unknown protein [Arabidopsis thaliana]
gi|30725444|gb|AAP37744.1| At3g25430 [Arabidopsis thaliana]
gi|332643489|gb|AEE77010.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
Length = 618
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 140/563 (24%), Positives = 246/563 (43%), Gaps = 100/563 (17%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL +Y F CQ + + +A+ FDFN CI+EG+SYLSR QE +
Sbjct: 110 YNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLS 169
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ +S+ S + DT +F R++ R+ W + D GS+
Sbjct: 170 ENPILADSVTVSSSPATVADT--------VFVGRIRSRVKNWRQSCI---DSGSKTGD-- 216
Query: 127 NDSKQQFETIF-----FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+D + + R ++++ + Q+ LI ++ + D+ L V+ ++ +Q
Sbjct: 217 DDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQ 276
Query: 182 NV-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V V++ S+ DK + +E+KD +K + + GFR V+D +SS +K +V N D
Sbjct: 277 AVRTVFMSSKEDKDLFKRELKDLEKEEN----RRVRGFREVVDFISSSQKPVVSQNYLSD 332
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ--RMKKSSTSLSKAF 298
I++KF GPLP ++F SS++ FP+++D + S L + + +SL++ F
Sbjct: 333 FTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFF 392
Query: 299 SVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY-----DAFMTGCVF 353
+ V+VEV +N VK + G+ +A M +F
Sbjct: 393 A---------------------PVDVEV-----ANQGCPVKLDEGHQSHGQNAVMISQLF 426
Query: 354 AQACSHLGIDFKQQSSSEN---LAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLAS 410
A+ C+ D S+E+ LA + EH N + N N+ ++ S ++S
Sbjct: 427 AKLCTIQKSDLSTIQSNEDFQALASD----EHANSVTSCSKNAGDENVKVWSKNSRRVSS 482
Query: 411 NKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV--ISVYHVDETAVFVQF 468
E +V +WG + A ++ + K + P V ++D ++ + F
Sbjct: 483 ------------ENLVFIWGLGKKMTAAKLKNVLQKSH-PVFAREFDVKYIDRSSAILVF 529
Query: 469 SRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFA 528
+ FL + ++ + S+ +A+ L G A YETYK C ++ F
Sbjct: 530 WESGPSETFLSAVNNEEQLDG--SLREMVAEGLRG-----AGYETYKRAC-----RLGF- 576
Query: 529 DQAKAVGIKWKTKLVESSDKTKE 551
W+ L ES DK E
Sbjct: 577 ---------WEADLAESLDKALE 590
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 139/562 (24%), Positives = 244/562 (43%), Gaps = 98/562 (17%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL +Y F CQ + + +A+ FDFN CI+EG+SYLSR QE +
Sbjct: 110 YNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLS 169
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ +S+ S + DT +F R++ R+ W + D GS+
Sbjct: 170 ENPILADSVTVSSSPATVADT--------VFVGRIRSRVKNWRQSCI---DSGSKTGD-- 216
Query: 127 NDSKQQFETIF-----FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+D + + R ++++ + Q+ LI ++ + D+ L V+ ++ +Q
Sbjct: 217 DDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQ 276
Query: 182 NV-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V V++ S+ DK + +E+KD +K + + GFR V+D +SS +K +V N D
Sbjct: 277 AVRTVFMSSKEDKDLFKRELKDLEKEEN----RRVRGFREVVDFISSSQKPVVSQNYLSD 332
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ--RMKKSSTSLSKAF 298
I++KF GPLP ++F SS++ FP+++D + S L + + +SL++ F
Sbjct: 333 FTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFF 392
Query: 299 SVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY-----DAFMTGCVF 353
+ V+VEV +N VK + G+ +A M +F
Sbjct: 393 A---------------------PVDVEV-----ANQGCPVKLDEGHQSHGQNAVMISQLF 426
Query: 354 AQACSHLGIDFKQQSSSEN---LAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLAS 410
A+ C+ D S+E+ LA + EH N + N N+ ++ S ++S
Sbjct: 427 AKLCTIQKSDLSTIQSNEDFQALASD----EHANSVTSCSKNAGDENVKVWSKNSRRVSS 482
Query: 411 NKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP-TSVISVYHVDETAVFVQFS 469
E +V +WG + A ++ + K + V ++D ++ + F
Sbjct: 483 ------------ENLVFIWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFW 530
Query: 470 RAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFAD 529
+ FL + ++ + S+ +A+ L G A YETYK C
Sbjct: 531 ESGPSETFLSAVNNEEQLDG--SLREMVAEGLRG-----AGYETYKRACR---------- 573
Query: 530 QAKAVGIKWKTKLVESSDKTKE 551
+G W+ L ES DK E
Sbjct: 574 ----LGF-WEADLAESLDKALE 590
>gi|222640635|gb|EEE68767.1| hypothetical protein OsJ_27469 [Oryza sativa Japonica Group]
Length = 601
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 202/429 (47%), Gaps = 56/429 (13%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL L AY F CQ++ + +A FDFN CI++G+SYLSR QE A + +
Sbjct: 99 YNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGFDFNMCIYDGISYLSRAQESLARERI 158
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLR--NRDEGSEVQP 124
+ ++++ + +I D +F R+K R+ W G + +GS V
Sbjct: 159 FIPH----------VRQLSSSPSTSIADSVFLTRIKSRIEHWRKGYTKPCKTADGSLV-- 206
Query: 125 SFNDSKQQ-FETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
N +Q + + RP+ S++ + Q+ L+ DL L V + ++ V
Sbjct: 207 --NTLRQLILGSESYGSRPSFSIDVCSDRQVQLVLEAANHISDDLVPLVVPDKAGTARAV 264
Query: 184 -IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
+++ S DK +L+ ++K K++ E ++K GFR VIDLLSS +K I+ +N D
Sbjct: 265 RVIFTSSPEDKNLLLMDIK---KMEDEHNLKFR-GFREVIDLLSSSQKPIISYNFLNDFT 320
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
I+SKF PLP EF+ S+ F ++ID M + L KA ++
Sbjct: 321 MIHSKFVAPLPPNLHEFMCSLRMVFSNVIDI-----------SHMWREIGPLRKAKNI-- 367
Query: 303 PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
Q AL ++L Q V ++VE I + N+ V ++G + +FA+ + L I
Sbjct: 368 -QGAL----SYLQRQYFVPMDVE---IPQQDGNNSVT-KSGENVLRITKLFAKLSNLLKI 418
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
Q+ S + H + E+ +LY S T E SE S+ N +
Sbjct: 419 SPNGQTHSGDKCHT--VEEYSYILYPSCTAEE----------SEDDKSSNESNTTRSVRT 466
Query: 423 ECIVIVWGF 431
+ +V +WGF
Sbjct: 467 DNVVFLWGF 475
>gi|218201212|gb|EEC83639.1| hypothetical protein OsI_29373 [Oryza sativa Indica Group]
Length = 602
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 201/429 (46%), Gaps = 56/429 (13%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL L AY F CQ++ + +A FDFN CI++G+SYLSR QE A + +
Sbjct: 100 YNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGFDFNMCIYDGISYLSRAQESLARERI 159
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLR--NRDEGSEVQP 124
+ ++++ + +I D +F R+K R+ W G + +GS V
Sbjct: 160 FIPH----------VRQLSSSPSTSIADSVFLTRIKSRIEHWRKGYTKPCKTADGSLV-- 207
Query: 125 SFNDSKQQ-FETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
N +Q + + RP+ S++ + Q+ L+ DL L V + ++ V
Sbjct: 208 --NTLRQLVLGSESYGSRPSFSIDVCSDRQVQLVLEAANHISDDLVPLVVPDKAGTARAV 265
Query: 184 -IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
+++ S DK +L+ ++K K++ E ++K GFR VIDLLSS +K I+ +N D
Sbjct: 266 RVIFTSSPEDKNLLLMDIK---KMEDEHNLKFR-GFREVIDLLSSSQKPIISYNFLNDFT 321
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
I+SKF PLP EF+ S+ F ++ID M + L KA ++
Sbjct: 322 MIHSKFVAPLPPNLHEFMCSLRMVFSNVIDI-----------SHMWREIGPLRKAKNI-- 368
Query: 303 PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
Q AL ++L Q V ++VE I + N+ V ++G + +FA+ + L I
Sbjct: 369 -QGAL----SYLQRQYFVPMDVE---IPQQDGNNSVT-KSGENVLRITKLFAKLSNLLKI 419
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
Q+ + H + E+ +LY S T E SE S+ N +
Sbjct: 420 SPNGQTHPGDKCHT--VEEYSYILYPSCTAEE----------SEDDKSSNESNTTRSVRT 467
Query: 423 ECIVIVWGF 431
+ +V +WGF
Sbjct: 468 DNVVFLWGF 476
>gi|326501938|dbj|BAK06461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 595
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/517 (26%), Positives = 230/517 (44%), Gaps = 66/517 (12%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNF +F R EL L +Y F CQ++ +A+ FDFN CI++G+SYLSR QE A +
Sbjct: 93 HNFHLFPRDELQLGMPSYSFSCQSSYFSSMARDGFDFNMCIYDGISYLSRVQESLARQKT 152
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLR--NRDEGSEVQP 124
+ + L++ + ++ D +F R+K R+ W G +GS V
Sbjct: 153 FTPH----------LQQPSPSASTSVADSVFTNRIKSRIQNWRKGCAEPSKTADGSLVS- 201
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV- 183
+ K + + RP++++ + Q+ L+ V+ DL L V + + V
Sbjct: 202 --SLRKLIMGSESYGSRPSMTILVCSDRQVQLVLETVKGTSDDLVTLVVPDKAGVPRAVR 259
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+++ S DK +L+ +++ K++ E S K GFR VIDL+SS +K I+ +NC D+
Sbjct: 260 VIFTSSAEDKNLLLMDIR---KLEDEQSSKFR-GFREVIDLVSSSEKPIISYNCLNDLTM 315
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
I+++F PLP EF+ S F ++D L S L+ KA ++
Sbjct: 316 IHAQFIAPLPPNLHEFMCSSRLVFSSVVDIGHLWREISPLR-----------KAKNI--- 361
Query: 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
Q AL ++L Q V +E+E I + GV ++G + +FA+ L I
Sbjct: 362 QAAL----SYLQRQHFVPMEIE---IPLQDGTRGVT-KSGENVLRITKLFAKLSKLLKIT 413
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
K QS S H + +H N+L S E S+ + + +
Sbjct: 414 PKCQSQSGEQHHT--VEDHRNILCPSCMVEE----------SDGVDCTNEPGTTRTVSTQ 461
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSV-ISVYHVDETAVFVQFSRAEMVSKFLDLKG 482
+V +WGF A D+R +++++ S + +D+T + F ++ S+ L
Sbjct: 462 SVVFLWGF-RETSAEDLRSRLTRLHHVFSKDFDLRLLDKTCSALIFRSSDTASELL---- 516
Query: 483 SLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICS 519
IS+ P AA ++ Y++ CS
Sbjct: 517 ------GDISLESPSLNNFFSEGLKAAGFDVYRKACS 547
>gi|224132034|ref|XP_002321239.1| predicted protein [Populus trichocarpa]
gi|222862012|gb|EEE99554.1| predicted protein [Populus trichocarpa]
Length = 628
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 132/525 (25%), Positives = 229/525 (43%), Gaps = 69/525 (13%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL ++ +Y F CQT+S+ +A+ FDFN+CI++G+SYLSREQE A +
Sbjct: 114 YNFHLFPRAELKMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESAAKIQM 173
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGL--LRNRDEGSEVQP 124
+ +++ T ++ D +F ER+K + W R EG+++Q
Sbjct: 174 GNPILAKNV--------TESTSTLSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQD 225
Query: 125 SFNDS--KQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+ S K + RP ++++ + Q L+ ++++ D+ L + + Q
Sbjct: 226 ALVRSLRKLVLGNEEYDSRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQA 285
Query: 183 V-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEK-KLIVGHNCFLD 240
V +V S+ DK +L + + K G +++L++ K +V H D
Sbjct: 286 VRVVLTSSKEDKDLLQENTVISFTREGSPGTK---GKSLIVNLVAEYNLKPVVSHGSLND 342
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ I+SKF PLP T +EF+ S+ FP +ID L+ S L++ TS+ A S
Sbjct: 343 LTVIHSKFIAPLPPTVDEFMCSLRLAFPLVIDVNHLMKEISPLRK-----VTSIPVAISQ 397
Query: 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
L + P + +E+ + N H G + +FA+ CS L
Sbjct: 398 L----------KNRFFTP-IDMEIPCQAME----NEDTIH--GQNVVKICELFARLCSIL 440
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWT------NGEIINLSTGNRTSESLASNKRK 414
ID S E + L + N+ T +GEI + RT
Sbjct: 441 KIDPAAVKSDEEKGAS-ALEAYANIFSPFCTASEEPIDGEIKIWTNNTRT---------- 489
Query: 415 NHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV-ISVYHVDETAVFVQFSRAEM 473
+ E +V +WGF + A ++ + + + S V VD + V F + +
Sbjct: 490 -----VSCEDMVFLWGFGDRVTAGILKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQHGL 544
Query: 474 VSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEIC 518
FL+ ++++ +D + PL +++ G AA YETY C
Sbjct: 545 TETFLN---TMNKCSD---MRGPLREMVSEGLR-AAGYETYNRAC 582
>gi|261335987|emb|CBH09267.1| putative poly(A)-specific ribonuclease (parn) [Heliconius
melpomene]
Length = 624
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/481 (27%), Positives = 202/481 (41%), Gaps = 101/481 (20%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F R G FLCQ++S+DFLA FDFN I EG+SY++
Sbjct: 84 YNFFLFPRGH---PGPEKIFLCQSSSLDFLASQGFDFNKLIKEGISYMT----------- 129
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
E ++S R+++ L+E +L ++D V P
Sbjct: 130 ------EPIES----------------------RLRENLTERQSRILNDKD--PIVIP-- 157
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRK--------HFKDLAYLRVSG-EN 177
+++KQQ E I K+R + N ++ +R+ FKD A++ EN
Sbjct: 158 DENKQQIEDICEKVRTFLDENKTDEMEIERCNAFIRRLLFQELGSRFKDEAFVETKVLEN 217
Query: 178 SCSQNVIVYIESESDKKMLMKEVKDEQK-IDAEMSIKASIGFRHVIDLLSSEKKLIVGHN 236
+ I+S SD K KD+QK + ++GF V ++S +KL+VGHN
Sbjct: 218 KSRVLKVTRIKSASDSKS-----KDDQKREKEWEEFEEAVGFSKVARMISQSEKLVVGHN 272
Query: 237 CFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSK 296
LD+ H S FF PLP F + FP ++DTK + +S+ + K +ST L
Sbjct: 273 MLLDVLHTLSHFFQPLPEDYASFKEFAHCMFPRLLDTKYM---SSLPPFKDKVASTVLPH 329
Query: 297 AFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356
L+ P E+ R + HEAGYDA++TG F
Sbjct: 330 LIQT-------------LSEPPFTLPEIPALSSRGYTFAQDKHHEAGYDAYVTGLCFLAM 376
Query: 357 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT---NGEIINLSTGNRTSESLASNKR 413
+H+ + + + L+ +N LYL+ T + INL+ G S S
Sbjct: 377 HAHV-TRMRGEKCTRVTPDAAVLKPFINKLYLAKTAHQDSPYINLA-GTDPSPS------ 428
Query: 414 KNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEM 473
++H V FP K W R I++++ I+V ++ET V SR E+
Sbjct: 429 RDH---------VFHLTFP---KEWQ-RNDINQLFSAYGQITVNFLNETTALVALSRKEL 475
Query: 474 V 474
Sbjct: 476 A 476
>gi|148236825|ref|NP_001081143.1| poly(A)-specific ribonuclease PARN [Xenopus laevis]
gi|46329632|gb|AAH68919.1| Parn-A protein [Xenopus laevis]
Length = 631
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 199/475 (41%), Gaps = 81/475 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE----RVLR 143
Query: 68 STYEDESLDSWHS-----LKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
YED S + + +IPD + D++ E + L+N + V
Sbjct: 144 DQYEDRRSQSNGASTMSYISPNSSKTPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNV 201
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQ 181
+P T +Q LI Q + K+ + + V E
Sbjct: 202 EPC------------------------TGYQRKLIYQTLNWKYPRGIHVETVESEKKERY 237
Query: 182 NVIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN LD
Sbjct: 238 IVISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLD 291
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +FF LP EF N FP ++DTK++ ++N F
Sbjct: 292 VMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKE 335
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +V+ + +S N S HEAGYDA++TG F ++
Sbjct: 336 IIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQPHEAGYDAYITGLCFISMANY 395
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F ++ +R N L+L I+++ N L KR N
Sbjct: 396 LG-SFLSPPKDYVSCRSKIVRPFFNKLFLM----RIMDIPYLNLEGPDLQP-KRDN---- 445
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 446 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 130/537 (24%), Positives = 227/537 (42%), Gaps = 109/537 (20%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL +Y F CQ + + +A+ FDFN CI+EG+SYLSR Q
Sbjct: 110 YNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGFDFNTCIYEGISYLSRAQ-------- 161
Query: 67 NSTYEDESLDSWHSLKEIRDTHLF------NIPDILFAERMKDRLSEWLGGLLRNRDEGS 120
ES + S I H+ + D +F R++ R+ W + D GS
Sbjct: 162 ------ESASKFLSGNPILADHITVSSSPATVADTVFVGRIRSRVKNWRQSCI---DSGS 212
Query: 121 EVQPSFNDSKQQFETIF-----FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSG 175
+ +D + + R ++++ + Q+ LI ++ + D+ L V+
Sbjct: 213 KT--GDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFSDDVVPLLVAS 270
Query: 176 ENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVG 234
++ +Q V V++ S+ DK + +E++D +K + + GFR V+DL+SS +K +V
Sbjct: 271 KSRGTQAVRTVFMSSKEDKDLFKRELQDLEKEEN----RRVRGFREVVDLISSSQKPVVS 326
Query: 235 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ--RMKKSST 292
N D I++KF GPLP ++F SS++ FP+++D + S L + + +
Sbjct: 327 QNYLSDFTSIHAKFLGPLPSNLDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMS 386
Query: 293 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK----HEA-GYDAF 347
SL++ F V V+VEV +N VK H++ G +A
Sbjct: 387 SLNRFF---------------------VPVDVEV-----ANQGCPVKLNEGHQSHGQNAV 420
Query: 348 MTGCVFAQACSHLGIDFKQQSSSENLAHNEKLR-----EHVNLLYLSWTNGEIINLSTGN 402
M +FA+ C+ Q+S + NE + EH N + N G+
Sbjct: 421 MISQLFAKLCTI------QKSDQSTVQSNEDFQALASDEHANSVTSCSKNA-------GD 467
Query: 403 RTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP-TSVISVYHVDE 461
S+ + ++WG + A ++ + K + V ++D
Sbjct: 468 ENSK---------------LRELGVIWGLAKKMTAAKLKNVLQKSHPVFAQEFDVKYLDR 512
Query: 462 TAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEIC 518
+ V F + FL + N+ + L +++ G A+ YETYK C
Sbjct: 513 SCAIVVFWESGPSETFLSVV------NNEEQLDGSLREMVAQG-LRASGYETYKRAC 562
>gi|60390587|sp|Q90ZA1.1|PARN_XENLA RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease; AltName: Full=parn-A
gi|14495249|gb|AAK64218.1|AF309688_1 poly(A)-specific ribonuclease [Xenopus laevis]
Length = 631
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 199/475 (41%), Gaps = 81/475 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE----RVLR 143
Query: 68 STYEDESLDSWHS-----LKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
YED S + + +IPD + D++ E + L+N + V
Sbjct: 144 DQYEDRRSQSNGASTMSYISPNSSKTPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNV 201
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQ 181
+P T +Q LI Q + K+ + + V E
Sbjct: 202 EPC------------------------TGYQRKLIYQTLNWKYPRGIHVETVESEKKERY 237
Query: 182 NVIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN LD
Sbjct: 238 IVISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLD 291
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +FF LP EF N FP ++DTK++ ++N F
Sbjct: 292 VMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKE 335
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +V+ + +S N S HEAGYDA++TG F ++
Sbjct: 336 IIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQLHEAGYDAYITGLCFISMANY 395
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F ++ +R N L+L I+++ N L KR N
Sbjct: 396 LG-SFLSPPKDYVSCRSKIVRPFFNKLFLM----RIMDIPYLNLEGPDLQP-KRDN---- 445
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 446 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>gi|197246532|gb|AAI69159.1| Unknown (protein for IMAGE:8898488) [Xenopus (Silurana) tropicalis]
Length = 525
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 126/482 (26%), Positives = 202/482 (41%), Gaps = 85/482 (17%)
Query: 3 FFGRHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKA 62
F NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E
Sbjct: 84 FMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE--- 139
Query: 63 LKHVNSTYEDE-------SLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRN 115
K + YE+ S S+ S + +IPD + D++ E + L+N
Sbjct: 140 -KQLRDQYEERRSQSNGASAMSYVSPNASKTP--VSIPDE--QKGFIDKVVERVEDFLKN 194
Query: 116 RDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVS 174
+ +V+P T +Q LI Q + K+ + + +
Sbjct: 195 EQKSMDVEPC------------------------TGYQRKLIYQTLNWKYPRGIHVETLE 230
Query: 175 GENSCSQNVIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIV 233
E VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+V
Sbjct: 231 SEKKERYIVISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVV 284
Query: 234 GHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTS 293
GHN LDI H +FF LP EF N FP ++DTK++ ++N
Sbjct: 285 GHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN------------- 331
Query: 294 LSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCV 352
F + +L L P +V+ + S N S HEAGYDA++TG
Sbjct: 332 ---PFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLHEAGYDAYITGLC 388
Query: 353 FAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNK 412
F ++LG F + ++ +R N L+L I+++ N L K
Sbjct: 389 FISMANYLG-SFLSPPKGYVSSRSKIIRPFFNKLFLM----RIMDIPYLNLEGPDLQP-K 442
Query: 413 RKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAE 472
R N V+ FP K D+ + S +G I V +D+T+ FV S +
Sbjct: 443 RDN----------VLHVAFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSHPD 488
Query: 473 MV 474
V
Sbjct: 489 QV 490
>gi|49115955|gb|AAH73682.1| Unknown (protein for IMAGE:5572400), partial [Xenopus laevis]
Length = 517
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 198/475 (41%), Gaps = 81/475 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE----RVLR 143
Query: 68 STYEDESLDS-----WHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
YED S + +IPD + D++ E + L+N + V
Sbjct: 144 DQYEDRRSQSNGASTMSYISPNSSKTPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNV 201
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQ 181
+P T +Q LI Q + K+ + + V E
Sbjct: 202 EPC------------------------TGYQRKLIYQTLNWKYPRGIHVETVESEKKERY 237
Query: 182 NVIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN LD
Sbjct: 238 IVISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLD 291
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +FF LP EF N FP ++DTK++ ++N F
Sbjct: 292 VMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKE 335
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +V+ + +S N S HEAGYDA++TG F ++
Sbjct: 336 IIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQLHEAGYDAYITGLCFISMANY 395
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F ++ +R N L+L I+++ N L KR N
Sbjct: 396 LG-SFLSPPKDYVSCRSKIVRPFFNKLFLM----RIMDIPYLNLEGPDLQP-KRDN---- 445
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 446 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>gi|440801121|gb|ELR22146.1| ribonuclease, putative [Acanthamoeba castellanii str. Neff]
Length = 546
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 154/347 (44%), Gaps = 57/347 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F R P F CQ S+ FL +++FDFN I+EGV YLSR E K V
Sbjct: 87 NFYLFPR---PYGWCDRRFTCQAASLQFLLEHKFDFNKFIYEGVGYLSRYVEGKMRPQVE 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
E + L S + + D N D+ F +K + WL G +GSE P
Sbjct: 144 E--EIQKLLDAASQEALPDIVPTNPRDVEFVAGIKASIDGWLQG------DGSE--PLL- 192
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
I+ N F L+ VR ++ +L +V G N+ +
Sbjct: 193 ---------------LIAPNSFLRR---LVYQEVRGNYPELNVEKVQG---TWDNMSISR 231
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
SE +K E+ +++ + E A+IGFR V + +S+ +K +VGHN LD+ + Y
Sbjct: 232 MSEEEKARRRAELVQQKRDEFE----AAIGFRQVWEAMSASRKPVVGHNLLLDLLYSYFH 287
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F LP + F ++NK FP I DTK + ++ + R+ ++
Sbjct: 288 FEDRLPSSFRNFKVAINKVFPTIFDTKHIAATDPAYKDRL-----------------LST 330
Query: 308 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
G + A++ V V V + N HEAG+DA+MTG +FA
Sbjct: 331 GLGDVYAAVKGGVNV-VHAEGFDRYRENEEYAHEAGFDAYMTGAIFA 376
>gi|115530723|emb|CAL49352.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 519
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 126/482 (26%), Positives = 202/482 (41%), Gaps = 85/482 (17%)
Query: 3 FFGRHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKA 62
F NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E
Sbjct: 84 FMKSFNFYIFPKP-FNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE--- 139
Query: 63 LKHVNSTYEDE-------SLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRN 115
K + YE+ S S+ S + +IPD + D++ E + L+N
Sbjct: 140 -KQLRDQYEERRSQSNGASAMSYVSPNASKTP--VSIPDE--QKGFIDKVVERVEDFLKN 194
Query: 116 RDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVS 174
+ +V+P T +Q LI Q + K+ + + +
Sbjct: 195 EQKSMDVEPC------------------------TGYQRKLIYQTLNWKYPRGIHVETLE 230
Query: 175 GENSCSQNVIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIV 233
E VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+V
Sbjct: 231 SEKKERYIVISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVV 284
Query: 234 GHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTS 293
GHN LDI H +FF LP EF N FP ++DTK++ ++N
Sbjct: 285 GHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN------------- 331
Query: 294 LSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCV 352
F + +L L P +V+ + S N S HEAGYDA++TG
Sbjct: 332 ---PFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLHEAGYDAYITGLC 388
Query: 353 FAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNK 412
F ++LG F + ++ +R N L+L I+++ N L K
Sbjct: 389 FISMANYLG-SFLSPPKGYVSSRSKIIRPFFNKLFLM----RIMDIPYLNLEGPDLQP-K 442
Query: 413 RKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAE 472
R N V+ FP K D+ + S +G I V +D+T+ FV S +
Sbjct: 443 RDN----------VLHVAFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSHPD 488
Query: 473 MV 474
V
Sbjct: 489 QV 490
>gi|308235956|ref|NP_001184102.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 632
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 200/478 (41%), Gaps = 77/478 (16%)
Query: 3 FFGRHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKA 62
F NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E
Sbjct: 84 FMKSFNFYIFPKP-FNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE--- 139
Query: 63 LKHVNSTYED-ESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEG 119
K + YE+ S + S + P + E+ D++ E + L+N +
Sbjct: 140 -KQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQKGFIDKVVERVEDFLKNEQKS 198
Query: 120 SEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENS 178
+++P T +Q LI Q + K+ + + + E
Sbjct: 199 MDLEPC------------------------TGYQRKLIYQTLNWKYPRGIHVETLESEKK 234
Query: 179 CSQNVIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNC 237
VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN
Sbjct: 235 ERYIVISKVDEEERKRMEQQKQAKEREELD------DAVGFSRIIQAISSSGKLVVGHNM 288
Query: 238 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 297
LDI H +FF LP EF N FP ++DTK++ ++N
Sbjct: 289 LLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------P 332
Query: 298 FSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356
F + +L L P +V+ + S N S HEAGYDA++TG F
Sbjct: 333 FKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLHEAGYDAYITGLCFISM 392
Query: 357 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 416
++LG F + ++ +R N L+L I+++ N L KR N
Sbjct: 393 ANYLG-SFLSPPKGYVSSRSKIIRPFFNKLFLM----RIMDIPYLNLEGPDLQP-KRDN- 445
Query: 417 YPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S + V
Sbjct: 446 ---------VLHVAFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSHPDQV 490
>gi|156351496|ref|XP_001622538.1| hypothetical protein NEMVEDRAFT_v1g1365 [Nematostella vectensis]
gi|156209100|gb|EDO30438.1| predicted protein [Nematostella vectensis]
Length = 459
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 163/361 (45%), Gaps = 50/361 (13%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF RQ + FLCQ++S+DFL+ + FDF I +G+SYL E K +
Sbjct: 86 NFYIFPRQ-IHRSTPDVRFLCQSSSLDFLSGHNFDFQKWITQGISYLRPYDEQKLRDNFQ 144
Query: 68 STYEDESLDSW-----HSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
+ S + HS +++ P I+ E E++ G S++
Sbjct: 145 ERQAEHSFGPFTSPPVHSPTGSSTKNVYKTPVIVPPEH-----QEFVSGAC------SKI 193
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+ D + ++ NG+ LI V+ F+ +L N +
Sbjct: 194 EEMVKDPDGKRTSL-------PPCNGYLRK---LIYQTVKHRFRSGIHLE-KNMNEKKEC 242
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
IV + + ++K K ++E+ + I++++GF V+ ++S KL+VGHN LD+
Sbjct: 243 FIVATKVDDNEK---KTFEEEKMAKEDELIESAVGFSAVMKMISDSGKLVVGHNMLLDLL 299
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
HI +FF PLP ++F ++V P ++DTK++ + ++ F
Sbjct: 300 HIVDQFFCPLPADLDDFKATVQSLLPRVLDTKVM----------------ATTQPFKNHL 343
Query: 303 PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK--HEAGYDAFMTGCVFAQACSHL 360
P LG HL + P + EV D + S + G + HEA YDA++TG F ++L
Sbjct: 344 PSTVLGDLVKHLTVSPFRRPEVFTDQ-QFSLYEEGSENLHEAAYDAYITGLSFVSMANYL 402
Query: 361 G 361
G
Sbjct: 403 G 403
>gi|443696772|gb|ELT97394.1| hypothetical protein CAPTEDRAFT_177560 [Capitella teleta]
Length = 612
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 129/485 (26%), Positives = 200/485 (41%), Gaps = 96/485 (19%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF R + D F CQ++S+DFL + FDFN C EG+SY++ ++E HV
Sbjct: 100 NFYIFPR-PVNSDATDVRFTCQSSSIDFLINHNFDFNKCFKEGISYMNCDEE----LHVT 154
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ L+ H+ RD P +K +++ L R + + S N
Sbjct: 155 -----KKLEQRHAEAAARDAQRLLSPSRSLHNDLKPGQKQYMQDL---RIKITNFVKSSN 206
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
+S + PA N F + L L+ K+ + + E ++ I
Sbjct: 207 ES--------LSLDPA---NAFL--RKLTYNLLHGKYPNQIHVQTKTNEKHQQYLLLQKI 253
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
S++D + + K ++ Q + ++ ++GF VI LL +KLI+GHN LD+ H+ K
Sbjct: 254 SSKTDVENIEKMRRNSQLGE----VQDAVGFAKVIQLLRESEKLIIGHNMLLDLLHMVDK 309
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLN---SNSILQQRMKKSSTSLSKAFSVLCPQ 304
F LP + EEF + FP IIDTK++ N I+ S K P+
Sbjct: 310 FCAVLPQSYEEFKLLASSVFPQIIDTKVMATLPPLNDIISSSNLSDLLSTVKESPFSSPE 369
Query: 305 I-------ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 357
I A GS S+H +HEA YDAF TG F
Sbjct: 370 IEWADNMDAYGSASSH-------------------------EHEAAYDAFSTGVCFISMA 404
Query: 358 SHLGIDFKQQSSSEN----LAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKR 413
+L S+EN LAH + VN++ + + INL + T
Sbjct: 405 QYLA-----SKSAENTDDILAHLKPFLNKVNVMRMQ--DIPFINLDAPDLTP-------C 450
Query: 414 KNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEM 473
KNH V FPS K+ D+ + ++ P + + VD T+ FV + +
Sbjct: 451 KNH---------VFHVTFPSEWKSNDLYQ----LFFPYGGVQISWVDGTSAFVSLVKKDQ 497
Query: 474 VSKFL 478
S+ L
Sbjct: 498 ASEVL 502
>gi|156388175|ref|XP_001634577.1| predicted protein [Nematostella vectensis]
gi|156221661|gb|EDO42514.1| predicted protein [Nematostella vectensis]
Length = 640
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 162/361 (44%), Gaps = 50/361 (13%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF RQ + FLCQ++S+DFL+ + FDF I +G+SYL E K +
Sbjct: 128 NFYIFPRQ-IHRSTPDVRFLCQSSSLDFLSSHNFDFQKWITQGISYLRPYDEQKLRDNFQ 186
Query: 68 STYEDESLDSW-----HSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
+ S + HS +++ P I+ E E++ G S++
Sbjct: 187 ERQAEHSFGPFTSPPVHSPTGSSTKNVYKTPVIVPPEH-----QEFVSGAC------SKI 235
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+ D + ++ NG+ LI V+ F+ +L +N +
Sbjct: 236 EEMVKDPDGKRTSL-------PPCNGYLRK---LIYQTVKHRFRSGIHLE---KNMNEKK 282
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
+ ++ D K +++ + E+ I++++GF V+ ++S KL+VGHN LD+
Sbjct: 283 ECFIVATKVDDNEKKKFEEEKMAKEDEL-IESAVGFSAVMKMISDSGKLVVGHNMLLDLL 341
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
HI +FF PLP ++F ++V P ++DTK++ + ++ F
Sbjct: 342 HIVDQFFCPLPADLDDFKATVQSLLPRVLDTKVM----------------ATTQPFKNHL 385
Query: 303 PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK--HEAGYDAFMTGCVFAQACSHL 360
P LG HL + P + EV D + S + G + HEA YDA++TG F ++L
Sbjct: 386 PSTVLGDLVKHLTVSPFRRPEVFTDQ-QFSLYEEGSENLHEAAYDAYITGLSFVSMANYL 444
Query: 361 G 361
G
Sbjct: 445 G 445
>gi|427786977|gb|JAA58940.1| Putative polya-specific ribonuclease parn [Rhipicephalus
pulchellus]
Length = 637
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 132/492 (26%), Positives = 221/492 (44%), Gaps = 63/492 (12%)
Query: 8 NFFIFQRQELPLDGAAYE-FLCQTTSMDFLAKYQFDFNACIHEGVSYLSRE---QEDKAL 63
NF++ +Q + GA F CQ +S+ FL+++ FDFN GVSYL E Q +AL
Sbjct: 85 NFYVCPKQTV--KGAPDRMFRCQASSLQFLSQHGFDFNKLFSHGVSYLRAEEATQLSQAL 142
Query: 64 --KHVNSTYEDESLDSWHS----LKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRD 117
+H E S ++ S ++ +DT F I D+L ++++ L G + D
Sbjct: 143 SERHAQQLKEVGSPNNGPSKISKVEVPKDTQQF-IDDVL--DKVQQFLDSASGTEVDMED 199
Query: 118 E-GSEVQPSFNDSKQQF---ETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRV 173
E G S DS + E K + L+ + LI V F D L
Sbjct: 200 EDGVGSAASKQDSPEDLCMREASPKKDGSTLHLSECNGFKRKLIYQEVNARFGDKVQLNT 259
Query: 174 SGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIV 233
++ ++ V I +++ E++ QK + E ++ + GF V++LL+S KLIV
Sbjct: 260 ESDSDGMLHIAVRITGTPEEQRARLELR--QKKERE-DLELAHGFGRVLELLASSGKLIV 316
Query: 234 GHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTS 293
GHN LDI H+ S+F LP EF S V FP ++DTK+L + ++I +
Sbjct: 317 GHNMLLDIMHLLSQFVDDLPKDYNEFKSMVRAAFPCLVDTKVLASDDAI-------KDSF 369
Query: 294 LSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
++ A +L Q L +PS VE ++ + N HEAGYDA++TG
Sbjct: 370 VTTALELLLKQ---------LRNRPSCVPPVESENGYGYSLNQTKYHEAGYDAYVTGMCL 420
Query: 354 AQACSHLGIDFKQQSSSENLAHNEK-LREHVNLLYLSWTNGEIINLS-TGNRTSESLASN 411
C LG K + S L L+ ++N +++ + +I L+ GN S
Sbjct: 421 LGLCQQLG---KYKDHSVELKETSPVLKPYLNRVHM-MQSPDIPTLNMAGNEVIPS---- 472
Query: 412 KRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRA 471
++H ++ FP +A D+ + ++ I+++ ++ T FV + +
Sbjct: 473 --RSH---------ILHATFPMEWRANDLYQ----LFNSFGQITIHWINSTQAFVAMASS 517
Query: 472 EMVSKFLDLKGS 483
+ ++ L GS
Sbjct: 518 PLATQALKKLGS 529
>gi|237649000|ref|NP_001153677.1| poly(A)-specific ribonuclease [Bombyx mori]
gi|224176033|dbj|BAH23570.1| similar to poly(A)-specific ribonuclease, PARN [Bombyx mori]
Length = 628
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 208/477 (43%), Gaps = 90/477 (18%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF++F R G F+CQ++S+DFLA FDFN I +G+SY++ E K +
Sbjct: 84 YNFYLFPRGS---PGPDRMFMCQSSSLDFLASQGFDFNKLIKDGISYMTVPIECKLRE-- 138
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
N T ++ ++ D H + DI +++ ++L +EG +
Sbjct: 139 NLTERQKTYSKGKDSIKVPDEHKAYVEDIC------NQVHQFL-------EEGQLDEMEI 185
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVS-GENSCSQNVIV 185
+ N F +LLL Q +R FKD + EN +
Sbjct: 186 D-----------------KCNSFV--RLLLFQ-ELRARFKDKILVETKILENKNRLLNVK 225
Query: 186 YIESESDKK---MLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
++S+ D K L KE + E DA +GF V ++S +KL+VGHN LD+
Sbjct: 226 RVKSQDDLKNHDALKKEREWEDFEDA-------VGFSKVARMISESEKLVVGHNMLLDVM 278
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
H + FF PLP +F + FPHI+DTK + +S+ + K +S+ L +
Sbjct: 279 HTLNHFFQPLPAEYTQFKEFTHCMFPHILDTKYM---SSLPPFKDKVNSSILKHLLAT-- 333
Query: 303 PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
L+ P +V D+ R + HEAGYDA++TG F SHL
Sbjct: 334 -----------LSAAPFSLPKVVSDEGRGYSQLHEKHHEAGYDAYVTGLCFLAMHSHLA- 381
Query: 363 DFKQQSSSENLAHNEKL-REHVNLLYLSWT---NGEIINLSTGNRTSESLASNKRKNHYP 418
+ + ++ L+ L + +N ++LS T + INL+ E L ++H
Sbjct: 382 NMRGDDTTRFLSITSPLIKPFLNKVFLSRTAHQDSPFINLA----GPEPLPP---RDH-- 432
Query: 419 KILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVS 475
V FP + W R I++++ P I+V +D+T+ FV +R E +
Sbjct: 433 -------VFHLAFP---REWQ-RNEITQLFSPFGPITVQFIDDTSAFVALARREQAT 478
>gi|345485560|ref|XP_001607788.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Nasonia
vitripennis]
Length = 779
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 163/360 (45%), Gaps = 66/360 (18%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F R PLD + + F+CQ +S+ FLA FDFN EG+ YL++E E+K
Sbjct: 84 YNFYVFPR---PLDRTSPDCRFMCQASSIVFLANEGFDFNKLFKEGIPYLTKEDEEK--- 137
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGL---LRNRDEGSE 121
+N D+ +++R+ L IP ++ K ++ E G+ + + D+G E
Sbjct: 138 -LNKKMVDK--------QKVREEGLDLIP---ISDDDKPQIDEICSGIEDYVNSEDDGKE 185
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
++ N F L+ R + + L EN
Sbjct: 186 LRIE-------------------RCNAFIRR---LVHQEARLRWPNKIRLETRNENGNQF 223
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
++ I ++ +++ E K+ K++ + ++ S+ R + D K+IVGHN LD+
Sbjct: 224 IIVSKIGTKEEEEQKETERKERVKLEVQEAVGLSVLLRKIAD----SGKVIVGHNMLLDL 279
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
HI +FF PLP + EF S V+ FP ++DTKI+ S Q ++L++ L
Sbjct: 280 CHIIHQFFAPLPESYHEFKSLVHCLFPRLLDTKIICQSG----QFKDSVPSNLNQLLETL 335
Query: 302 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
H A P E E RS N+ HEAGYDA++TG F C+ LG
Sbjct: 336 -----------HSA--PFSIPETENIPDRSYKLNNDKSHEAGYDAYITGLCFIALCNRLG 382
>gi|321455833|gb|EFX66955.1| hypothetical protein DAPPUDRAFT_203845 [Daphnia pulex]
Length = 582
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 161/362 (44%), Gaps = 54/362 (14%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F + G + F+ Q +S+ FLA FDFN I EG+ YL+ +E+K
Sbjct: 86 YNFYVFPHTSM---GGLCDKKFMSQASSLSFLATQGFDFNKLIKEGIPYLNLLEEEKVKL 142
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDIL--FAERMKDRLSEWLGGLLRNRDEGSEV 122
+ + ++DS + + IP + + + +++ + N +E S
Sbjct: 143 KLEKRNKFSNVDSK---VPCHNNEISEIPPDQKGYVDHIVSKVTTFFESN-GNDEEKSPA 198
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
F S Q E IF SH VR + +L + VS + +C
Sbjct: 199 ILEFQCSSLQSELIF-------------SH--------VRTRYPNLLF--VSAKKTCG-G 234
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDA--EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V ++ + L KE D++ + A + I+ +GF V+ +++ KL+VGHN LD
Sbjct: 235 CTVTVKKAASSCNLEKESVDKKSLPAAEKPRIEDYMGFSEVVRKITNSGKLVVGHNMLLD 294
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ HI +F PLP EEF + N +FP +IDTK++ + +K F
Sbjct: 295 LCHILGQFCEPLPEDYEEFKAMTNTFFPRVIDTKVM----------------ATTKPFRD 338
Query: 301 LCPQIALGSKSTHLALQPSVKVE-VEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
L P ALG L P E V D S +S +HEAGYDAF+TG ++
Sbjct: 339 LLPNSALGPLLKALLKAPFRNTEIVTAKDFPSYKDDSLKEHEAGYDAFVTGRCLIALTNY 398
Query: 360 LG 361
LG
Sbjct: 399 LG 400
>gi|37681897|gb|AAQ97826.1| poly(A)-specific ribonuclease [Danio rerio]
Length = 660
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 198/468 (42%), Gaps = 68/468 (14%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFSRTSPDIKFICQSSSIDFLASQGFDFNKVFRSGIPYLTQEEECQLREQYE 147
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ S T + N+P+ + E + LL+N D+ +++P
Sbjct: 148 ERRGQMNGAGPVSYTPPSGTGVCNVPED--QREFIRSVEEKVEALLKNTDQTLDLEP--- 202
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
GF + L+ Q + K+ K L + E + + I
Sbjct: 203 ------------------CTGF--QRKLIYQTLNSKYSKGLHVETLETEK---KERFIQI 239
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
D++ +E + +Q+ + + ++GF VI +S KL+VGHN LD+ H +
Sbjct: 240 SKVDDEERRRREQQKQQR--EQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQ 297
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F GPLP ++F FP ++DTK++ + ++ F + +L
Sbjct: 298 FCGPLPEELDDFKEVAMTVFPRLLDTKLMAS----------------TQPFKEIIHNTSL 341
Query: 308 GSKSTHLALQPSVKVEVEVDD-IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L +P E + ++S + ++ HEAGYDAF+TG F ++LG F
Sbjct: 342 AELHKQLRQKPFRPPTTECPEGLQSYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLT 400
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S A ++ L N L+L +I++ N + L +++H V
Sbjct: 401 PPKSHISARSKLLEPFYNKLFLM----RVIDIPYLNMSGPDL--QPKRDH---------V 445
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I V VD+T+ FV S+ E V
Sbjct: 446 LYVTFPKEWKTSDLYQLFS-AFG---NIQVSWVDDTSAFVSLSQTEQV 489
>gi|357504877|ref|XP_003622727.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
gi|355497742|gb|AES78945.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
Length = 513
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 143/539 (26%), Positives = 228/539 (42%), Gaps = 112/539 (20%)
Query: 51 VSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLG 110
+SYLSR QE A + + S SL ++ + + D +F ER++ R+ W
Sbjct: 20 ISYLSRAQESVAKIRLGT--------SSPSLGVMKSSSPPTVADTVFIERIRSRIKHW-- 69
Query: 111 GLLRNRDEGSEVQPSFNDSKQQFETIF--------------------------------- 137
RN + S + S D K+ F
Sbjct: 70 ---RNTCKNSGTKTS-KDGKKIFSKFCTMRFFLGSPFILYHSFCADELINSIRNIISGSE 125
Query: 138 -FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKM 195
FK+RP ++++ + Q+ LI +V DL L + + +Q V +V +S DK++
Sbjct: 126 QFKLRPCLNVDVCSDRQVQLILQMVVDFSDDLLPLVIPSKGGTTQAVRVVLTKSREDKEV 185
Query: 196 LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLT 255
L +E + E K GFR VIDL+S+ +K ++ HNC D I+SKF PLP
Sbjct: 186 LERE----LRSLEEEESKKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPSE 241
Query: 256 AEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTH-L 314
+EF+SS+ K FP +ID LL K S ++ K ++ + AL +TH L
Sbjct: 242 VDEFVSSLCKIFPKVIDVNYLL-----------KKSGTMKKVTNI---RNALSYMNTHFL 287
Query: 315 ALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID-FKQQSSSENL 373
AL VE+E+ D N G G DA +F + CS L I +S + L
Sbjct: 288 AL-----VEMEIPD--QDTINKG--KIDGLDALRLSYLFMKLCSVLKISPVVTESGNRQL 338
Query: 374 AHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPS 433
A +L + N+ + N I S+ N +N RK + ++F +WGF
Sbjct: 339 A--PQLEDFTNVFHSCSAN---IQESSCNEDVSVWTNNTRKANCEHLVF-----LWGFKF 388
Query: 434 HLKAWDIRECISKVYGP-TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPIS 492
+ A ++ + + + V VD++ FV F + FL++ N++ IS
Sbjct: 389 GMTAGMLKSVLRESHDIFLEEFDVKFVDKSCAFVVFWEPGLSKDFLNV-----MNDEQIS 443
Query: 493 VLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKE 551
L +L+ G YETY+ +C +G+ W+ L ES +K+ E
Sbjct: 444 --GGLKELVSDGLR-VTGYETYRTMCR--------------LGL-WEIDLAESLEKSLE 484
>gi|60390548|sp|Q7ZU92.2|PARN_DANRE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
Length = 660
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 198/468 (42%), Gaps = 68/468 (14%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFSRTSPDIKFICQSSSIDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYE 147
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ S T + N+P+ + E + LL+N D+ +++P
Sbjct: 148 ERRGQMNGAGPVSYTPPSGTGVCNVPED--QREFIRSVEEKVEALLKNTDQTLDLEP--- 202
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
GF + L+ Q + K+ K L V + + + I
Sbjct: 203 ------------------CTGF--QRKLIYQTLNSKYSKGL---HVEALETEKKERFIQI 239
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
D++ +E + +Q+ + + ++GF VI +S KL+VGHN LD+ H +
Sbjct: 240 SKVDDEERRRREQQKQQR--EQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQ 297
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F GPLP ++F FP ++DTK++ + ++ F + +L
Sbjct: 298 FCGPLPEELDDFKEVAMTVFPRLLDTKLMAS----------------TQPFKEIIHNTSL 341
Query: 308 GSKSTHLALQPSVKVEVEVDD-IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L +P E + ++S + ++ HEAGYDAF+TG F ++LG F
Sbjct: 342 AELHKQLRQKPFRPPTTECPEGLQSYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLT 400
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S A ++ L N L+L +I++ N + L +++H V
Sbjct: 401 PPKSHISARSKLLEPFYNKLFLM----RVIDIPYLNMSGPDL--QPKRDH---------V 445
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I V VD+T+ FV S+ E V
Sbjct: 446 LYVTFPKEWKTSDLYQLFS-AFG---NIQVSWVDDTSAFVSLSQTEQV 489
>gi|41055217|ref|NP_957382.1| poly(A)-specific ribonuclease PARN [Danio rerio]
gi|29791562|gb|AAH50496.1| Zgc:56067 [Danio rerio]
Length = 647
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 198/468 (42%), Gaps = 68/468 (14%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFSRTSPDIKFICQSSSIDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYE 147
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ S T + N+P+ + E + LL+N D+ +++P
Sbjct: 148 ERRGQMNGAGPVSYTPPSGTGVCNVPED--QREFIRSVEEKVEALLKNTDQTLDLEP--- 202
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
GF + L+ Q + K+ K L V + + + I
Sbjct: 203 ------------------CTGF--QRKLIYQTLNSKYSKGL---HVEALETEKKERFIQI 239
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
D++ +E + +Q+ + + ++GF VI +S KL+VGHN LD+ H +
Sbjct: 240 SKVDDEERRRREQQKQQR--EQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQ 297
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F GPLP ++F FP ++DTK++ + ++ F + +L
Sbjct: 298 FCGPLPEELDDFKEVAMTVFPRLLDTKLMAS----------------TQPFKEIIHNTSL 341
Query: 308 GSKSTHLALQPSVKVEVEVDD-IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L +P E + ++S + ++ HEAGYDAF+TG F ++LG F
Sbjct: 342 AELHKQLRQKPFRPPTTECPEGLQSYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLT 400
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S A ++ L N L+L +I++ N + L +++H V
Sbjct: 401 PPKSHISARSKLLEPFYNKLFLM----RVIDIPYLNMSGPDL--QPKRDH---------V 445
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I V VD+T+ FV S+ E V
Sbjct: 446 LYVTFPKEWKTSDLYQLFS-AFG---NIQVSWVDDTSAFVSLSQTEQV 489
>gi|443429421|gb|AGC92706.1| poly(A)-specific ribonuclease PARN-like protein [Heliconius erato]
Length = 586
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 174/411 (42%), Gaps = 83/411 (20%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F R G FLCQ++S+DFL+ FDFN I EG+SY+S
Sbjct: 84 YNFFLFPRGR---PGPDKIFLCQSSSLDFLSSQGFDFNKLIREGISYMS----------- 129
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
E ++S R+++ L+E ++ ++D V P
Sbjct: 130 ------EPIES----------------------RLRENLTERQSRIINDKD--PIVIP-- 157
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRK--------HFKDLAYLRVSG-EN 177
++ K Q E I ++R + N + +R+ FKD A++ EN
Sbjct: 158 DEHKSQIEDICKRVRTFLDENKTDEMDIDRCNAFIRRLLFQELGSRFKDEAFVETKVLEN 217
Query: 178 SCSQNVIVYIESESDKKMLMKEVKDEQK-IDAEMSIKASIGFRHVIDLLSSEKKLIVGHN 236
+ I+S S+ K KD+QK + ++GF V ++S +KL++GHN
Sbjct: 218 KSRVLKVTRIKSPSESKS-----KDDQKREKEWEEFEEAVGFSKVARMISQSEKLVIGHN 272
Query: 237 CFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSK 296
LD+ H S FF PLP F + FP ++DTK + +S+ + K +ST L
Sbjct: 273 MLLDVLHTLSHFFQPLPEDYASFKEFAHCMFPRLLDTKYM---SSLPPFKDKVASTVLPH 329
Query: 297 AFSVLC-PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 355
L P AL + PS R +HEAGYDA++TG F
Sbjct: 330 LLQTLSEPPFAL----PEIPSLPS----------RGYTCAQDKQHEAGYDAYVTGLCFLA 375
Query: 356 ACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT---NGEIINLSTGNR 403
+H+ + + + L+ +N LYL+ T + I+L+ +R
Sbjct: 376 MHAHV-TRMRGERCTRVTPDAAVLKPFINKLYLAKTAHQDSPYIHLAGADR 425
>gi|359494766|ref|XP_003634836.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 515
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 194/439 (44%), Gaps = 75/439 (17%)
Query: 138 FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKML 196
++ RP ++L+ + HQ+ L+ V+ + F DL L + + +Q V ++ SE DK +L
Sbjct: 127 YRSRPCVNLDVCSEHQVQLVLEVLGEFFDDLVPLLIPAKGGGTQAVRVILTSSEEDKDLL 186
Query: 197 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 256
+E++D + E K GFR VIDL+S+ +K +V HN + A I+SKF PLP
Sbjct: 187 KRELQDLE----EEQNKRVCGFREVIDLISASQKPVVSHNSLNEFAFIHSKFLSPLPPNM 242
Query: 257 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 316
+EF+ S+ FPH++D L+ L K T+LS A S L +
Sbjct: 243 DEFMCSLRMVFPHVLDVNHLMKEIGPL-----KKVTNLSAAASCLKRRFF---------- 287
Query: 317 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ-QSSSENLAH 375
V +++E+ S N H G++ + A CS L I + QS +LA
Sbjct: 288 ---VPIDMEIPHQAS---NEDKIH--GHNVLKISHLLANLCSILKITPEMIQSDGGHLA- 338
Query: 376 NEKLREHVNLLYLSWTNGE-IINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 434
L + N+ + TN E I+ T ++ K+ E +V +WGF
Sbjct: 339 -SALEGYANIFHPHSTNTEDPIDGGIKVWTDDTR----------KVSSEGLVFIWGFRGR 387
Query: 435 LKAWDIRECISKVYGPTSVIS----VYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDP 490
+ A ++ + G SV S V VD + V F ++ + FL+ S +
Sbjct: 388 MSAGGLKRLLQ---GSHSVFSEEFDVRMVDGSCAIVVFWQSGLSQTFLEAISS-----NW 439
Query: 491 ISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTK 550
IS L L +++ G AA YETYK C +G W+ L +S DK
Sbjct: 440 ISGL--LREMVSEG-LRAAGYETYKNACR--------------LGF-WEADLADSLDKAL 481
Query: 551 E---HESLRKVKAVNSDPS 566
E H S +A + PS
Sbjct: 482 EEPDHNSEADSEAKPTGPS 500
>gi|297742825|emb|CBI35579.3| unnamed protein product [Vitis vinifera]
Length = 6458
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 194/439 (44%), Gaps = 75/439 (17%)
Query: 138 FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKML 196
++ RP ++L+ + HQ+ L+ V+ + F DL L + + +Q V ++ SE DK +L
Sbjct: 6070 YRSRPCVNLDVCSEHQVQLVLEVLGEFFDDLVPLLIPAKGGGTQAVRVILTSSEEDKDLL 6129
Query: 197 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 256
+E++D + E K GFR VIDL+S+ +K +V HN + A I+SKF PLP
Sbjct: 6130 KRELQDLE----EEQNKRVCGFREVIDLISASQKPVVSHNSLNEFAFIHSKFLSPLPPNM 6185
Query: 257 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 316
+EF+ S+ FPH++D L+ L K T+LS A S L +
Sbjct: 6186 DEFMCSLRMVFPHVLDVNHLMKEIGPL-----KKVTNLSAAASCLKRRFF---------- 6230
Query: 317 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ-QSSSENLAH 375
V +++E+ S N H G++ + A CS L I + QS +LA
Sbjct: 6231 ---VPIDMEIPHQAS---NEDKIH--GHNVLKISHLLANLCSILKITPEMIQSDGGHLA- 6281
Query: 376 NEKLREHVNLLYLSWTNGE-IINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 434
L + N+ + TN E I+ T ++ K+ E +V +WGF
Sbjct: 6282 -SALEGYANIFHPHSTNTEDPIDGGIKVWTDDTR----------KVSSEGLVFIWGFRGR 6330
Query: 435 LKAWDIRECISKVYGPTSVIS----VYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDP 490
+ A ++ + G SV S V VD + V F ++ + FL+ S +
Sbjct: 6331 MSAGGLKRLLQ---GSHSVFSEEFDVRMVDGSCAIVVFWQSGLSQTFLEAISS-----NW 6382
Query: 491 ISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTK 550
IS L L +++ G AA YETYK C +G W+ L +S DK
Sbjct: 6383 ISGL--LREMVSEGLR-AAGYETYKNACR--------------LGF-WEADLADSLDKAL 6424
Query: 551 E---HESLRKVKAVNSDPS 566
E H S +A + PS
Sbjct: 6425 EEPDHNSEADSEAKPTGPS 6443
>gi|348540666|ref|XP_003457808.1| PREDICTED: poly(A)-specific ribonuclease PARN [Oreochromis
niloticus]
Length = 679
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 119/486 (24%), Positives = 200/486 (41%), Gaps = 102/486 (20%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF+IF + P + + + F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK---PFNRTSPDIKFICQSSSIDFLASQGFDFNKVFCHGIPYLNQEEEAQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILF------------AERMKD---RLSEWLG 110
+E R+ H + F E KD ++ E +
Sbjct: 146 T---------------EERRNQHANGVGTPSFISPSSSKGSSHVPEEHKDFINKVVEKVE 190
Query: 111 GLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAY 170
LL N ++ +++P GF + L+ Q + K K L
Sbjct: 191 ALLGNSEKTLDLEP---------------------CTGF--QRKLIYQTLNWKFPKGLHV 227
Query: 171 LRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEK 229
V E I ++ E K+ +++QK++ E + ++GF VI +S
Sbjct: 228 ETVETEKKERYIQISKVDEEERKR------REQQKLEREQEELNDAVGFSRVIHAISKSG 281
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 289
KL+VGHN LD+ H +F+ PLP ++F FP ++DTK++ +
Sbjct: 282 KLVVGHNMLLDVMHTIHQFYCPLPEDLQDFKEVTMCVFPRLLDTKLMAS----------- 330
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFM 348
++ F L +L L P +VE + S + HEAGYDA++
Sbjct: 331 -----TQPFKELITNTSLAELEKQLKESPFKSPQVETAEGFPSYDTAQEQLHEAGYDAYI 385
Query: 349 TGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESL 408
TG F ++LG F + A ++ + N L+L II++ N T L
Sbjct: 386 TGLCFIAMANYLG-SFLTPPKAYISARSKLIEPFFNKLFLM----RIIDIPYLNITGPDL 440
Query: 409 ASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQF 468
+++H V+ FP K D+ + S +G I V +D+T+ FV
Sbjct: 441 --QPKRDH---------VLYVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSL 485
Query: 469 SRAEMV 474
S+ + V
Sbjct: 486 SQTDQV 491
>gi|403222320|dbj|BAM40452.1| uncharacterized protein TOT_020000708 [Theileria orientalis strain
Shintoku]
Length = 625
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 159/380 (41%), Gaps = 109/380 (28%)
Query: 17 LPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK-------ALKHVNS- 68
+P DG F ++++FL FDFN+ I G+ +L ++E++ L H++
Sbjct: 164 IPSDGNT--FSVNMSTLNFLKDNNFDFNSWIRHGICHLKPKEEEERKSLILSKLAHIDEL 221
Query: 69 ----TYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
EDE + E T++ ++ D E + R+ WL
Sbjct: 222 TRGINKEDEEF----KVNEYDLTNIQDLEDRKTVEEVVKRVEGWL--------------- 262
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN-- 182
F+ K+ E F++ A LLI V+ F ++ NSC ++
Sbjct: 263 -FSQDKKPLE---FEVESAF--------LRLLIHSVISIKFPNIY------SNSCKKDDR 304
Query: 183 --VIVYIES----ESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHN 236
V VY ESD+ L+ E+ + I+ +G R + D +SS KK++VGHN
Sbjct: 305 KLVRVYKSQRELLESDRATLLSELSE---------IEREVGLRTLFDTISSHKKILVGHN 355
Query: 237 CFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSK 296
CF DI H+Y F+G LP T E F + K FP + DTK +S+
Sbjct: 356 CFYDILHVYQTFYGDLPDTVESFKAEWLKVFPKVFDTKY------------------ISE 397
Query: 297 AFSVLCPQIALGSKSTHLALQPSVKVEVE------------------VDDIRSSNWNSGV 338
F +L PQ +L + + +VEVE +DDI GV
Sbjct: 398 FFHILNPQSSLKMLYESVLSSSTSRVEVEALPGTKWDITLPGSRRGVIDDIGDRGATEGV 457
Query: 339 -----KHEAGYDAFMTGCVF 353
+H+AGYD+FMTG VF
Sbjct: 458 VKKFDEHDAGYDSFMTGLVF 477
>gi|328776032|ref|XP_392167.3| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis mellifera]
Length = 897
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 121/483 (25%), Positives = 206/483 (42%), Gaps = 95/483 (19%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F R PL+ A + F+CQT+S+ FLA FDFN G+ YL+ +E+K +K
Sbjct: 84 YNFYVFPR---PLNRMAPDCRFMCQTSSISFLASQGFDFNKLFKLGIPYLTTNEEEKLMK 140
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
RL E R RDEG+E+ P
Sbjct: 141 ---------------------------------------RLEEKQ----RIRDEGTEILP 157
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLL------IQLVVRKHFKDLAYLRVSGENS 178
+ + Q E I ++ ++ + +LL+ I+ +V + K ++ E+
Sbjct: 158 ISDVERPQIEEICSRIDEFVTSE---TEELLIEKCNAFIRRLVYQEVKLRWPNKLKVESK 214
Query: 179 CSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCF 238
+ + + K ++ + E++ + I+ ++G ++ ++ KLIVGHN
Sbjct: 215 MNNFGCILVVQRLGTKEEEEQREIEKREREKTEIQQAVGLSILMRKIADSGKLIVGHNML 274
Query: 239 LDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAF 298
LD+ HI +FFG LP + EF S V+ FP I+DTKI+ + S+ F
Sbjct: 275 LDLCHIVHQFFGQLPESYFEFKSLVHSLFPRILDTKIICH----------------SQQF 318
Query: 299 SVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 358
P LG ++ P EVE D RS + S HEAGYDA++TG F +
Sbjct: 319 KENIPSSNLGILLETVSKSPFKITEVEPIDGRSYSTLSEKCHEAGYDAYITGICFIALSN 378
Query: 359 HLGIDFKQQSSSENLAHNEKLREHVN-LLYLSWTNGEIINLSTGNRTSESLASNKRKNHY 417
+LG ++ L+ + L +N LL + INL + N ++H
Sbjct: 379 YLG-SLQKPEVPIVLSDSPLLNPFLNKLLIARLKDVPYINLVGDD-------PNPSRDH- 429
Query: 418 PKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKF 477
V FP K W + IS ++ P + V + + + +++ R + V++
Sbjct: 430 --------VFHLTFP---KEWKFND-ISHLFSPFGSVHVSWLSDISAYIELHRRDQVNEV 477
Query: 478 LDL 480
+ +
Sbjct: 478 MKV 480
>gi|158285726|ref|XP_308433.4| AGAP007399-PA [Anopheles gambiae str. PEST]
gi|157020132|gb|EAA04629.5| AGAP007399-PA [Anopheles gambiae str. PEST]
Length = 631
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 200/490 (40%), Gaps = 92/490 (18%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK----- 61
+NF+ + + G F CQ SM FLA FDFN EG+SY + +E +
Sbjct: 94 YNFYCYPK------GRTNVFSCQGESMRFLADNGFDFNRLFREGLSYANETEEQRYRADL 147
Query: 62 ----ALKHVN--STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRN 115
A + N + E + + + E+ D ++ +P
Sbjct: 148 KDRQATRAANILAAAESDLTEEEPKVGEVNDVNMIPVP---------------------- 185
Query: 116 RDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVS 174
E Q +D+ E R + + + Q LI Q++ +++ + ++ VS
Sbjct: 186 ----PEHQQQVDDTAASIEEFLQSDRQELIVGSCNAFQRKLIYQMIEQRYQRKVSTSTVS 241
Query: 175 GENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIV 233
EN+ I+ E + ++ DEQ+ E ++ ++G V+ L+ +KLI+
Sbjct: 242 LENNQKA-----IKVERKRSTEEEQALDEQRRTRENDDLETNVGLSLVLQELAKARKLII 296
Query: 234 GHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTS 293
GHN LD+ ++ +FF PLP +EF +YFP ++DTK L + I ++ +S+
Sbjct: 297 GHNMLLDLFYVLRQFFKPLPADYQEFKKLTKEYFPLLLDTKYLCTNAEI---KVNVNSSV 353
Query: 294 LSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
L+ + + + + H L + VDD + KHEAGYDA++TG F
Sbjct: 354 LAHVYDAVS-KAPFSIPTVHPELP---DYQYSVDDEK--------KHEAGYDAYLTGLCF 401
Query: 354 AQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS-WTNGEIINLSTGNRTSESLASNK 412
S + Q NL H ++N ++++ T+ I L+ T +
Sbjct: 402 LGLVSKFKANLLQLPKDPNLKH------YLNRIFITRLTDVNYIYLNGKEPT-------Q 448
Query: 413 RKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAE 472
+ H + FP + DI+ K +GP + V +D T+ FV
Sbjct: 449 TREH---------IFYATFPETWRTGDIQNKF-KPFGP---VHVSWLDNTSAFVALHNRS 495
Query: 473 MVSKFLDLKG 482
S L + G
Sbjct: 496 AASSVLKMIG 505
>gi|118487753|gb|ABK95700.1| unknown [Populus trichocarpa]
Length = 454
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 121/481 (25%), Positives = 211/481 (43%), Gaps = 67/481 (13%)
Query: 51 VSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLG 110
+SYLSREQE A + + +++ T ++ D +F ER+K + W
Sbjct: 8 ISYLSREQESTAKIQMGNPILAKNV--------TESTSTLSVADSVFVERIKSHIKNWKK 59
Query: 111 GL--LRNRDEGSEVQPSFNDS--KQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFK 166
R EG+++Q + S K + RP ++++ + Q L+ ++++
Sbjct: 60 ACKETSTRKEGNQIQDALVRSLRKLVLGNEEYDSRPCMNIDVCSERQAQLVVEMLQEFAD 119
Query: 167 DLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVK-DEQKIDAEMSIKASIGFRHVIDL 224
D+ L + + Q V +V S+ DK +L +++ DEQ++ ++ GFR VIDL
Sbjct: 120 DVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQGKLQNDEQELKKKVR-----GFREVIDL 174
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
+S+ +K +V H D+ I+SKF PLP T +EF+ S+ FP +ID L+ S L+
Sbjct: 175 ISASQKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFMCSLRLAFPLVIDVNHLMKEISALR 234
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
+ TS+ A S L + P + +E+ + N H G
Sbjct: 235 K-----VTSIPVAISQL----------KNRFFTP-IDMEIPCQAME----NEDTIH--GQ 272
Query: 345 DAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT------NGEIINL 398
+ +FA+ CS L ID S E + L + N+ T +GEI
Sbjct: 273 NVVKICELFARLCSILKIDPAAVKSDEEKGAS-ALEAYANIFSPFCTASEEPIDGEI--- 328
Query: 399 STGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV-ISVY 457
+ +NK N+ + E +V +WGF + A ++ + + + S V
Sbjct: 329 --------KIWTNKWTNNTRTVSCEDLVFLWGFGDRVTAGVLKSLLQESHEAFSKEFDVR 380
Query: 458 HVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEI 517
VD + V F + + FL+ ++++ +D + PL +++ G AA YETY
Sbjct: 381 LVDNSCAIVIFWQHGLTETFLN---TMNKCSD---MRGPLREMVSEGLR-AAGYETYNRA 433
Query: 518 C 518
C
Sbjct: 434 C 434
>gi|384488069|gb|EIE80249.1| hypothetical protein RO3G_04954 [Rhizopus delemar RA 99-880]
Length = 747
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 72/358 (20%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF A F+ Q + DFL K FDFN +++G+ YL++ QE+K +
Sbjct: 283 NFYIFPTSTTGTVQANRIFMTQAQAFDFLVKQSFDFNKWVYQGIPYLTK-QEEKVYRE-- 339
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIP----DILFAERMKDRLSEWLGGLLRNRDEGSEVQ 123
K + D + NIP + F + K ++ +WL +D+G
Sbjct: 340 -----------QGEKRMAD-DMPNIPVDEKEFEFMKAAKQKIEQWLKD--NKKDDG---- 381
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+++ ++Q LI VR ++ +L + + G
Sbjct: 382 --------------------VNIVAKNAYQRRLIYQEVRNNYSELTAIGMQG-------- 413
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+I + KE K E+ E + ++GFR VID++S KK++VGHN LDI H
Sbjct: 414 --FIRITKLTEKQQKERKKEKLEKFENDCRQAVGFRKVIDMISESKKMVVGHNMLLDICH 471
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+ +F PLP T EF +K FP++IDTK M + L K F
Sbjct: 472 VIGQFVQPLPDTLAEFKVLTHKLFPNLIDTKY-----------MCAAEPELFKIFGTATA 520
Query: 304 QIALGSKSTHLAL-QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
L +++ A P + + + + + HEAGYDAFMTG F + S+L
Sbjct: 521 LEQLRFETSKEAFANPRIDMHPQF-----PRYLTEKAHEAGYDAFMTGAAFLRLTSYL 573
>gi|348584110|ref|XP_003477815.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Cavia
porcellus]
Length = 637
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 201/486 (41%), Gaps = 102/486 (20%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK---- 61
NF++F + PL+ ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PLNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 62 ------------ALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWL 109
AL +V+ + K+ D + I D+L +E K E
Sbjct: 146 YDEKRSQANGAGALAYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEANKTLDLEPC 205
Query: 110 GGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLA 169
G R K ++T+ +K I + + K
Sbjct: 206 TGFQR---------------KLIYQTLSWKYPKGIHIETLETE-------------KKER 237
Query: 170 YLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEK 229
Y+ +S N E E ++ K K++++++ ++GF VI +++
Sbjct: 238 YIVISKVN----------EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSG 281
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 289
KL+VGHN LD+ H +F+ PLP+ +EF FP ++DTK++ +
Sbjct: 282 KLVVGHNMLLDVMHTIHQFYCPLPVDLKEFKEMTTCVFPRLLDTKLMAS----------- 330
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFM 348
++ F + +L L P +VE + S + S HEAGYDA++
Sbjct: 331 -----TQPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYI 385
Query: 349 TGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESL 408
TG F ++LG F A +E + N L+L ++++ N L
Sbjct: 386 TGLCFISMANYLG-SFLSPPKIHVSARSEIIEPFFNKLFLM----RVMDIPYLNLEGPDL 440
Query: 409 ASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQF 468
+++H V+ FP K+ D+ + S +G I + +D+T+ FV
Sbjct: 441 --QPKRDH---------VLHVTFPKEWKSSDLYQLFS-AFG---NIQISWIDDTSAFVSL 485
Query: 469 SRAEMV 474
S+ E V
Sbjct: 486 SQPEQV 491
>gi|426254329|ref|XP_004020831.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Ovis
aries]
Length = 577
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 113/476 (23%), Positives = 204/476 (42%), Gaps = 82/476 (17%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 28 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 80
Query: 66 VNSTYEDESLDSWHSLKEIRDTHL------FNIPDILFAERMKDRLSEWLGGLLRNRDEG 119
+ Y+++ L S + + T IPD ++ D++ E + LL++ +
Sbjct: 81 LREQYDEKRLQS-NGAGALSYTSPNTSKCPVTIPDD--QKKFIDQVVEKIEDLLQSEENK 137
Query: 120 SEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSC 179
+ + P GF + L+ Q + K+ K + + E
Sbjct: 138 N-----------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKE 175
Query: 180 SQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFL 239
VI ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN L
Sbjct: 176 RYIVISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLL 230
Query: 240 DIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 299
D+ H +F+ PLP EF FP ++DTK++ + ++ F
Sbjct: 231 DVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFK 274
Query: 300 VLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 358
+ +L L P +VE + S + S HEAGYDA++TG F +
Sbjct: 275 DIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 334
Query: 359 HLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYP 418
+LG F S A ++ + N L+L ++++ N L +++H
Sbjct: 335 YLG-SFLSPPKSHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH-- 385
Query: 419 KILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 386 -------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 430
>gi|291390633|ref|XP_002711808.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 638
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/475 (23%), Positives = 204/475 (42%), Gaps = 80/475 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL +E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFCNGIPYLIQEEE----RQ 141
Query: 66 VNSTYEDE--SLDSWHSLKEIRDT---HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGS 120
+ Y+++ + +L + H IP+ ++ D++ E + LL++ + +
Sbjct: 142 LREQYDEKRSQTNGAGTLAYVSPNASKHPVTIPED--QKKFIDQVVEKIEDLLQSEENKN 199
Query: 121 EVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS 180
+ P GF + L+ Q + RK+ K + + E
Sbjct: 200 -----------------LDLEPC---TGF--QRKLIYQTLSRKYPKGIHVETLETEKKER 237
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+ + + EQ+ + ++GF VI +++ KL++GHN LD
Sbjct: 238 YIVISKVDEEERKRREQQRLAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLD 292
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +F+ PLP EF + FP ++DTK++ + ++ F
Sbjct: 293 VMHTVHQFYCPLPADLNEFKEMTSCVFPRLLDTKLMAS----------------TQPFKD 336
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +VE + S + S HEAGYDA++TG F ++
Sbjct: 337 IINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F A ++ + N L+L ++++ N L +++H
Sbjct: 397 LG-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH--- 446
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|296417778|ref|XP_002838529.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634469|emb|CAZ82720.1| unnamed protein product [Tuber melanosporum]
Length = 455
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 161/369 (43%), Gaps = 70/369 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+ E G E++ Q +++ FL + F+FN+ G+ YLSR +E ++ N
Sbjct: 90 NFFVNPNSEQKF-GLDREYVVQASAIGFLLESGFNFNSTYTSGIRYLSRREERYVIEREN 148
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
++ KE D H+ D S+ +D +E+Q +
Sbjct: 149 RLAQE--------FKE--DIHI-------------DEASQQF-----VKDFIAEIQEWVD 180
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
D F+ + + G S+Q LI VVRK F L L G + Q ++
Sbjct: 181 DPNPTFDFVNI----STVGQGVNSYQKRLIHQVVRKTFPHLQTL---GRPTFVQ--VIRT 231
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
+ ++K MK +DE++ E ++ IG RHVID L S +K ++GHN F D+ ++Y
Sbjct: 232 DPAAEK---MK--RDERRARFETDVERGIGLRHVIDALFSSQKPLIGHNLFTDLINLYEC 286
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC----P 303
F GPLP T++EF ++++ FP +IDTK + ++ ++L + +L P
Sbjct: 287 FIGPLPDTSKEFAHAIHESFPIVIDTKFIATCDT----ETATYGSNLQGIWDLLSTQDFP 342
Query: 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
I L T A S + HEAGYD++ T + +
Sbjct: 343 AIGLDLGYTRYA-------------------TSRLAHEAGYDSYNTAQILIRLIGRYQAY 383
Query: 364 FKQQSSSEN 372
+ +SEN
Sbjct: 384 LSRHLASEN 392
>gi|326928857|ref|XP_003210589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Meleagris
gallopavo]
Length = 574
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 205/475 (43%), Gaps = 80/475 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF+IF + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 28 NFYIFPK---PFNRSSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE----RQ 80
Query: 66 VNSTYEDE--SLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRN-RDEGS 120
+ Y+++ + SL I + P + ++ K D++ E + L+N +E
Sbjct: 81 LREQYDEKRSQANGAGSLSYI-SPNATKCPVAIPEDQKKFIDKIVEQIEEFLKNNENESL 139
Query: 121 EVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS 180
E++P GF + L+ Q + K+ K + + +
Sbjct: 140 ELEP---------------------CTGF--QRKLIYQTLSWKYPKGIHVETLESDKKER 176
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+ ++ EQ+ + ++GF V+ +++ KL++GHN LD
Sbjct: 177 YIVISKVDEEERKRREQQKQAKEQE-----ELNDAVGFSRVVHAIANSGKLVIGHNMLLD 231
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +F+ PLP EF + FP ++DTK++ + ++ F
Sbjct: 232 VMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTKLMAS----------------TQPFKD 275
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +VE + S + S HEAGYDA++TG F +
Sbjct: 276 IINNTSLAELEKRLKEVPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANF 335
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F + A ++ + N L+L ++++ N L +++H
Sbjct: 336 LG-SFLSPPKNHVSARSKLIEPFFNKLFLM----RVMDIPYLNLQGPDL--QPKRDH--- 385
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 386 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 430
>gi|170066704|ref|XP_001868194.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
gi|167862920|gb|EDS26303.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
Length = 539
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 170/392 (43%), Gaps = 72/392 (18%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF+ F + G + F CQ SM FLA + FDFN EG+SY E++ +
Sbjct: 52 YNFYCFPK------GRVHVFACQGESMRFLADHGFDFNKLFREGLSYCGEADEERMRMDL 105
Query: 67 NSTYEDESLDSWHSLKEIRDTH--LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
E + E + + + +P E++ + E +G L + ++ +
Sbjct: 106 KERQEQRAAALEAEEGEEANGNDAVNMVPVPATEEKLMAEIEERIGVFLASEEKDFTI-- 163
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+ NGF + L+ Q++ K K ++ V EN + ++
Sbjct: 164 -------------------TNCNGF--QRKLVYQMIEAKFRKQISTSSVELENK-HKGIL 201
Query: 185 VYIE--SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
V + E D+K+ ++V E + +++++G V+ LS +KLIVGHN LD+
Sbjct: 202 VERKRTKEQDRKLEQEKVAQEN-----VDLESAVGLSLVLQELSKTRKLIVGHNMLLDLM 256
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL- 301
+ +FF PLP ++F +V + FP ++DTK L + + ++ S+ L F +
Sbjct: 257 FVIRQFFRPLPYNFQDFKKTVRELFPLLLDTKYLCTNAEL---KVHVFSSVLGHVFEAVR 313
Query: 302 -----CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356
P++ GS+ S + + +HEAGYDA++TG F
Sbjct: 314 KEPFKLPEVKSGSEE------------------HSYSMDQEKQHEAGYDAYLTGLCFLGL 355
Query: 357 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 388
S+ +D NL ++ L+ + N +YL
Sbjct: 356 ASYFKVDLT------NLTNDATLKMYFNRIYL 381
>gi|383864733|ref|XP_003707832.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Megachile
rotundata]
Length = 577
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 203/479 (42%), Gaps = 97/479 (20%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F R PL+ AA + F+CQT+ + FLA FDFN G+ YL+ +E+K K
Sbjct: 84 YNFYVFPR---PLNCAAPDCRFMCQTSCLSFLANQGFDFNKLFKLGIPYLTMTEEEKLTK 140
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
L+ LKE E E+ P
Sbjct: 141 R---------LEKRQKLKE----------------------------------ETPELVP 157
Query: 125 SFNDSKQQFETIFFKMRP-------AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGEN 177
+D K Q E I +++ +++ ++ L+ VR + + ++ EN
Sbjct: 158 ITDDDKPQIEDICSRIQEFTESETEELTIEKCNAYMRRLVHQEVRIRWPN----KLKVEN 213
Query: 178 SCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNC 237
+ K +E + ++K ++ I+ ++G ++ ++ KLIVGHN
Sbjct: 214 RLENFGCTLVVQRLGTKEEEEEKEIKRKEKEKLEIQQAVGLSMLMRKIADSGKLIVGHNM 273
Query: 238 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 297
LD+ HI +FFG LP EF + V+ FP ++DTKI+ +S Q R S++L+
Sbjct: 274 LLDLCHIVHQFFGQLPENYLEFKALVHSLFPKVLDTKIICHSQ---QFRECVPSSNLNIL 330
Query: 298 FSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 357
+ SKS P EVE D R + + HEAGYDA++TG F
Sbjct: 331 LETI-------SKS------PFKVPEVESIDGRGYSMLAEKCHEAGYDAYITGICFIALS 377
Query: 358 SHLGIDFKQQSSSENLAHNEKLREHVNLLYLS-WTNGEIINLSTGNRTSESLASNKRKNH 416
++LG + S L+ + L +N L ++ + INL+ + N ++H
Sbjct: 378 NYLG-SLQTPEISVVLSDSPLLEPFLNKLVIARLKDIPYINLTGDD-------PNPSRDH 429
Query: 417 YPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVS 475
V FP K W + + I +++ P + V + +T +V +R E V+
Sbjct: 430 ---------VFHLTFP---KEWKLND-ICQLFSPFGGVHVSWLSDTTAYVGLNRREQVN 475
>gi|155371965|ref|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taurus]
gi|223590122|sp|P69341.2|PARN_BOVIN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|151556271|gb|AAI50016.1| PARN protein [Bos taurus]
gi|296473404|tpg|DAA15519.1| TPA: poly(A)-specific ribonuclease PARN [Bos taurus]
Length = 638
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 199/471 (42%), Gaps = 72/471 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHL-FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
+ + S + IPD ++ D++ E + LL++ + +
Sbjct: 146 YDEKRSQSNGAGALSYTSPNTSKCPVTIPDD--QKKFIDQVVEKIEDLLQSEENKN---- 199
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+ P GF + L+ Q + K+ K + + E VI
Sbjct: 200 -------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 241
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 242 SKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 296
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 297 VHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINN 340
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 341 TSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-S 399
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
F S A ++ + N L+L ++++ N L +++H
Sbjct: 400 FLSPPKSHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 446
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|344292088|ref|XP_003417760.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Loxodonta
africana]
Length = 638
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 207/475 (43%), Gaps = 80/475 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 141
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P ++ E+ K D++ E + LL++ DE
Sbjct: 142 LREQYDEKRLQSNGAGALSYV-SPNTSKCPVMVPEEQKKFIDQVVEKIEDLLQS-DENKN 199
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ + P GF + L+ Q + K+ K + + E
Sbjct: 200 LD----------------LEPC---TGF--QRKLIYQTLSWKYPKGIHIETLETEKKERY 238
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+ +++QK E+ + ++GF VI +++ KL++GHN LD
Sbjct: 239 IVISKVDEEERKR------REQQKHAKELEGLNDAVGFSRVIHAIANSGKLVIGHNMLLD 292
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +F+ PLP EF FP ++DTK++ + ++ F
Sbjct: 293 VMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKD 336
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +VE + S + S HEAGYDA++TG F +
Sbjct: 337 IINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMADY 396
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F A ++ + N L+L ++++ N L +++H
Sbjct: 397 LG-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH--- 446
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|440896814|gb|ELR48641.1| Poly(A)-specific ribonuclease PARN, partial [Bos grunniens mutus]
Length = 617
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 199/471 (42%), Gaps = 72/471 (15%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ + F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 84 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 140
Query: 66 VNSTYEDESLDSWHSLKEIRDTHL-FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
+ + S + IPD ++ D++ E + LL++ + +
Sbjct: 141 YDEKRSQSNGAGALSYTSPNTSKCPVTIPDD--QKKFIDQVVEKIEDLLQSEENKN---- 194
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+ P GF + L+ Q + K+ K + + E VI
Sbjct: 195 -------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 236
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 237 SKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 291
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 292 VHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINN 335
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 336 TSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-S 394
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
F S A ++ + N L+L ++++ N L +++H
Sbjct: 395 FLSPPKSHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 441
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 442 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 486
>gi|301765382|ref|XP_002918111.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ailuropoda
melanoleuca]
Length = 638
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 205/474 (43%), Gaps = 78/474 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 141
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P + ++ K D++ E + LL++ + +
Sbjct: 142 LREQYDEKRLQSNGAGTLSYV-SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN- 199
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ P GF + L+ Q + K+ K + + E
Sbjct: 200 ----------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVDTLETEKKERY 238
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
VI ++ E K+ +++ EQ+ + ++GF VI +++ KLI+GHN LD+
Sbjct: 239 IVISKVDEEERKRREQQKLAKEQE-----ELNDAVGFSRVIHAIANSGKLIIGHNMLLDV 293
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 294 MHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDI 337
Query: 302 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+L L P +VE + S + + HEAGYDA++TG F ++L
Sbjct: 338 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYL 397
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 420
G F A ++ + N L+L ++++ N L +++H
Sbjct: 398 G-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---- 446
Query: 421 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 -----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|350427143|ref|XP_003494666.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
impatiens]
Length = 821
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 126/491 (25%), Positives = 207/491 (42%), Gaps = 107/491 (21%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F R PL+ A + F+CQT+SM FLA +FDFN G+ YL+ +E
Sbjct: 84 YNFYVFPR---PLNRTAPDLRFMCQTSSMSFLASQEFDFNKLFKLGIPYLTASEE----- 135
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
E++ RL E + RDE E+ P
Sbjct: 136 ----------------------------------EKLIKRLEEKQ----KIRDETLEILP 157
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAY----------LRVS 174
+ + Q E I KM I TS + L+ + L Y LR+
Sbjct: 158 ITDVERPQIEDICRKMDEFI-----TSEEEELVIDKCSAFIRRLVYQEAKLRWPNKLRIE 212
Query: 175 G--ENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLI 232
EN V+ + ++ +++ E +++++ + + ++ SI R + D KL+
Sbjct: 213 SKMENFGCNLVVQRLGTKEEEEQREIEKREKEREEIQHAVGLSILMRKISD----SGKLL 268
Query: 233 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSST 292
VGHN LD+ HI +FFG LP + EF S ++ FP I+DTKI+ +S Q+ K++
Sbjct: 269 VGHNMLLDLCHIIHQFFGYLPESYLEFKSLLHGLFPRILDTKIICHS-----QQFKEN-- 321
Query: 293 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 352
P LG ++ P EVE D RS + + HEAGYDA++TG
Sbjct: 322 ---------VPSSNLGILLETVSKSPFKITEVEPIDGRSYSTLTEKCHEAGYDAYITGIC 372
Query: 353 FAQACSHLGIDFKQQSSSENLAHNEKLREHVN-LLYLSWTNGEIINLSTGNRTSESLASN 411
F ++LG + L+ + L +N LL + INL + N
Sbjct: 373 FIALSNYLG-SLQNPEVPIVLSDSSLLDPFLNKLLIARLKDIPYINLVGED-------PN 424
Query: 412 KRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRA 471
++H I F K W + IS+++ P + V +++T+ ++ R
Sbjct: 425 PNRDHILHITFP------------KEWRFND-ISQLFSPFGGVHVSWLNDTSAYIGLHRR 471
Query: 472 EMVSKFLDLKG 482
+ V+ + + G
Sbjct: 472 DQVNAVMKILG 482
>gi|281340599|gb|EFB16183.1| hypothetical protein PANDA_006508 [Ailuropoda melanoleuca]
Length = 615
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 205/474 (43%), Gaps = 78/474 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 82 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 134
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P + ++ K D++ E + LL++ + +
Sbjct: 135 LREQYDEKRLQSNGAGTLSYV-SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN- 192
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ P GF + L+ Q + K+ K + + E
Sbjct: 193 ----------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVDTLETEKKERY 231
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
VI ++ E K+ +++ EQ+ + ++GF VI +++ KLI+GHN LD+
Sbjct: 232 IVISKVDEEERKRREQQKLAKEQE-----ELNDAVGFSRVIHAIANSGKLIIGHNMLLDV 286
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 287 MHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDI 330
Query: 302 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+L L P +VE + S + + HEAGYDA++TG F ++L
Sbjct: 331 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYL 390
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 420
G F A ++ + N L+L ++++ N L +++H
Sbjct: 391 G-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---- 439
Query: 421 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 440 -----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|149725913|ref|XP_001490195.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Equus
caballus]
Length = 637
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 111/473 (23%), Positives = 202/473 (42%), Gaps = 76/473 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQLR 143
Query: 68 STYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNR-DEGSEV 122
Y+++ L S +L + + P + ++ K D + E + LL++ D+ ++
Sbjct: 144 EQYDEKRLQSNGAGALSYV-SPNTSKCPVTIPEDQKKFIDHVIEKIEDLLQSEEDKNLDL 202
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+P GF + L+ Q + K+ K + + E
Sbjct: 203 EP---------------------CTGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYI 239
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
VI ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+
Sbjct: 240 VISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVM 294
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 295 HTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDII 338
Query: 303 PQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 339 NNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398
Query: 362 IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 421
F + A ++ + N L+L ++++ N L +++H
Sbjct: 399 T-FLSPPKTHVSARSKLVEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH----- 446
Query: 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|355709311|gb|AES03549.1| polyA-specific ribonuclease [Mustela putorius furo]
Length = 482
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 110/475 (23%), Positives = 204/475 (42%), Gaps = 80/475 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 79 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 131
Query: 66 VNSTYEDESLDS--WHSLKEIRDTH---LFNIPDILFAERMKDRLSEWLGGLLRNRDEGS 120
+ Y+++ L S +L + IP+ ++ D++ E + LL++ + +
Sbjct: 132 LREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPED--QKKFIDQVVEKIEDLLQSEENKN 189
Query: 121 EVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS 180
+ P GF + L+ Q + K+ K + + E
Sbjct: 190 -----------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVDTLETEKKER 227
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+ +++ EQ+ + ++GF VI +++ KL++GHN LD
Sbjct: 228 YIVISKVDEEERKRREQQKLAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLD 282
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +F+ PLP EF FP ++DTK++ + ++ F
Sbjct: 283 VMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKD 326
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +VE + S + + HEAGYDA++TG F ++
Sbjct: 327 IINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANY 386
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F A ++ + N L+L ++++ N L +++H
Sbjct: 387 LG-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH--- 436
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 437 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 481
>gi|332240353|ref|XP_003269352.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Nomascus
leucogenys]
Length = 578
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/473 (23%), Positives = 203/473 (42%), Gaps = 76/473 (16%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ + F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 28 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 80
Query: 66 VNSTYEDE--SLDSWHSLKEIR-DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
+ Y+++ + +L + +T +P ++ D++ E + LL++ + +
Sbjct: 81 LREQYDEKRSQANGAGALSYVSPNTSKCPVPIPEDQKKFIDQVVEKIEDLLQSEENKN-- 138
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+ P GF + L+ Q + K+ K + + E
Sbjct: 139 ---------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYI 178
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
VI ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+
Sbjct: 179 VISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVM 233
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 234 HTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDII 277
Query: 303 PQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 278 NNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 337
Query: 362 IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 421
F A ++ + N L+L ++++ N L +++H
Sbjct: 338 -SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH----- 385
Query: 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 386 ----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 430
>gi|73958883|ref|XP_536966.2| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Canis
lupus familiaris]
Length = 638
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 204/474 (43%), Gaps = 78/474 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL+ E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNHEEE----RQ 141
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P + ++ K D++ E + LL++
Sbjct: 142 LREQYDEKRLQSNGAGALSYV-SPNTSKCPVTIPEDQKKFIDQVVEKIENLLQSE----- 195
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
E+ + P GF + L+ Q + K+ K + + E
Sbjct: 196 ------------ESKNLDLEPC---TGF--QRKLIYQTLSWKYPKGIHVDTLETEKKERY 238
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
VI ++ E K+ +++ EQ+ + ++GF VI +++ KL++GHN LD+
Sbjct: 239 IVISKVDEEERKRREQQKLAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDV 293
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 294 MHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDI 337
Query: 302 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+L L P +VE + S + + HEAGYDA++TG F ++L
Sbjct: 338 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYL 397
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 420
G F A ++ + N L+L ++++ N L +++H
Sbjct: 398 G-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---- 446
Query: 421 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 -----VLHVTFPKEWKTSDLYQLFS-AFG---NIHISWIDDTSAFVSLSQPEQV 491
>gi|322801460|gb|EFZ22121.1| hypothetical protein SINV_07959 [Solenopsis invicta]
Length = 571
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 159/359 (44%), Gaps = 64/359 (17%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F + P++ A + F+CQ +S+ FLA FDFN G+ YL E+K +K
Sbjct: 84 YNFYVFPK---PMNRQAPDSRFMCQASSIVFLANQDFDFNKLFKHGIPYLCASDEEKLVK 140
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
++ LKE + + I D DR P
Sbjct: 141 R---------MEEKQKLKEENNQDIIPISD-------NDR-------------------P 165
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+ + E ++++ L+ R + D + EN+ Q ++
Sbjct: 166 QIEEICSRIENFLASDAKELTIDRCNGFMRRLVYQEARARWPDKVRIETKIENTW-QCLL 224
Query: 185 VYIESESDKKMLMKEVKDEQKIDAE-MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
V +++ E KD +K + E + +K ++G ++ + +K+IVGHN LD+ H
Sbjct: 225 VQRAGTKEEE----EGKDNEKREKEKLEVKQAVGLSSLLKKIVESEKIIVGHNMLLDLCH 280
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
I +FF PLP EF S ++ FP+++DTK++ S+ Q + SS++L+ L
Sbjct: 281 IIHQFFTPLPSDYLEFKSLIHGLFPNLLDTKVICQSH---QFKELVSSSNLNFLLETLS- 336
Query: 304 QIALGSKSTHLALQPSVKV-EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+P + E+E + RS + ++ HEAGYDA++TG F ++LG
Sbjct: 337 -------------KPPFSIPEIESVEGRSYSVSTEKSHEAGYDAYITGLCFIAMSNYLG 382
>gi|296219599|ref|XP_002755955.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Callithrix
jacchus]
Length = 639
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 111/486 (22%), Positives = 194/486 (39%), Gaps = 102/486 (20%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK---- 61
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 62 ------------ALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWL 109
AL +V+ + K+ D + I D+L +E K+ E
Sbjct: 146 YDEKRSQANGAGALSYVSPNTSKCPVTVPEDQKKFIDEVVEKIEDLLQSEENKNLDLEPC 205
Query: 110 GGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLA 169
G R L+ Q + K+ K +
Sbjct: 206 TGFQRK---------------------------------------LIYQTLSWKYPKGIH 226
Query: 170 YLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEK 229
+ E VI ++ E K+ ++ EQ+ + ++GF VI +++
Sbjct: 227 VETLETEKKERYIVISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSG 281
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 289
KL++GHN LD+ H +F+ PLP EF FP ++DTK++ +
Sbjct: 282 KLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------- 330
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFM 348
++ F + +L L P +VE + S + S HEAGYDA++
Sbjct: 331 -----TRPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYI 385
Query: 349 TGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESL 408
TG F ++LG F + A ++ + N L+L ++++ N L
Sbjct: 386 TGLCFISMANYLG-SFLSPPKTHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL 440
Query: 409 ASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQF 468
+++H V+ FP K D+ + S +G I + +D+T+ FV
Sbjct: 441 --QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSL 485
Query: 469 SRAEMV 474
S+ E V
Sbjct: 486 SQPEQV 491
>gi|332240351|ref|XP_003269351.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Nomascus
leucogenys]
Length = 639
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/473 (23%), Positives = 203/473 (42%), Gaps = 76/473 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 141
Query: 66 VNSTYEDE--SLDSWHSLKEIR-DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
+ Y+++ + +L + +T +P ++ D++ E + LL++ + +
Sbjct: 142 LREQYDEKRSQANGAGALSYVSPNTSKCPVPIPEDQKKFIDQVVEKIEDLLQSEENKN-- 199
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+ P GF + L+ Q + K+ K + + E
Sbjct: 200 ---------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYI 239
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
VI ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+
Sbjct: 240 VISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVM 294
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 295 HTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDII 338
Query: 303 PQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 339 NNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398
Query: 362 IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 421
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 -SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH----- 446
Query: 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|432108569|gb|ELK33278.1| Poly(A)-specific ribonuclease PARN [Myotis davidii]
Length = 604
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 205/475 (43%), Gaps = 80/475 (16%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ + F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 190 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 242
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P + ++ K D++ E + LL++ + +
Sbjct: 243 LREQYDEKRLQSNGAGALSYV-SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN- 300
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCS 180
+ L+ T Q LI Q + K+ K + + E
Sbjct: 301 ----------------------LDLDPCTGFQRKLIYQTLNWKYPKGIHVETLETEKKER 338
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V+ ++ E K+ ++ EQ+ + ++GF VI +++ KLI+GHN LD
Sbjct: 339 YIVVSKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLIIGHNMLLD 393
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +F PLP EF FP ++DTK++ + ++ F
Sbjct: 394 VMHTVHQFCCPLPEDLNEFKEMTTSVFPKLLDTKLMAS----------------TQPFKD 437
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +VE + S + S HEAGYDA++TG F ++
Sbjct: 438 IINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMTNY 497
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F + A ++ + +N L+L ++++ N L +++H
Sbjct: 498 LG-SFLSPPKNHVSARSKLIEPFINKLFLM----RVMDIPYLNLEGPDL--QPKRDH--- 547
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 548 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 592
>gi|348584112|ref|XP_003477816.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 2 [Cavia
porcellus]
Length = 591
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 110/467 (23%), Positives = 190/467 (40%), Gaps = 97/467 (20%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK----------------ALKHVNS 68
+F+CQ++S+DFLA FDFN G+ YL++E+E + AL +V+
Sbjct: 59 KFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSP 118
Query: 69 TYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFND 128
+ K+ D + I D+L +E K E G R
Sbjct: 119 NTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEANKTLDLEPCTGFQR-------------- 164
Query: 129 SKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 188
K ++T+ +K I + + K Y+ +S N E
Sbjct: 165 -KLIYQTLSWKYPKGIHIETLETE-------------KKERYIVISKVN----------E 200
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
E ++ K K++++++ ++GF VI +++ KL+VGHN LD+ H +F
Sbjct: 201 EERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQF 254
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 308
+ PLP+ +EF FP ++DTK++ + ++ F + +L
Sbjct: 255 YCPLPVDLKEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLA 298
Query: 309 SKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQ 367
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 299 ELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSP 357
Query: 368 SSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVI 427
A +E + N L+L ++++ N L +++H V+
Sbjct: 358 PKIHVSARSEIIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VL 402
Query: 428 VWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
FP K+ D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 403 HVTFPKEWKSSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 445
>gi|397525565|ref|XP_003832732.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Pan
paniscus]
Length = 639
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVVDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|410985167|ref|XP_003998895.1| PREDICTED: poly(A)-specific ribonuclease PARN [Felis catus]
Length = 638
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 110/474 (23%), Positives = 204/474 (43%), Gaps = 78/474 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 141
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P + ++ K D++ E + LL++ + +
Sbjct: 142 LREQYDEKRLQSNGAGTLSYV-SPNASKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN- 199
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ P GF + L+ Q + K+ K + + E
Sbjct: 200 ----------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERY 238
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
VI ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+
Sbjct: 239 IVISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDV 293
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 294 MHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDI 337
Query: 302 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+L L P +VE + S + + HEAGYDA++TG F ++L
Sbjct: 338 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLHEAGYDAYITGLCFLSMANYL 397
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 420
G F A ++ + N L+L ++++ N L +++H
Sbjct: 398 G-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---- 446
Query: 421 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 -----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|344292090|ref|XP_003417761.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Loxodonta
africana]
Length = 592
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 111/455 (24%), Positives = 196/455 (43%), Gaps = 75/455 (16%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKE 83
F+CQ++S+DFLA FDFN G+ YL++E+E + + Y+++ L S +L
Sbjct: 60 FVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSY 115
Query: 84 IRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMR 141
+ + P ++ E+ K D++ E + LL++ DE + +
Sbjct: 116 V-SPNTSKCPVMVPEEQKKFIDQVVEKIEDLLQS-DENKNLD----------------LE 157
Query: 142 PAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVK 201
P GF + L+ Q + K+ K + + E VI ++ E K+ +
Sbjct: 158 PC---TGF--QRKLIYQTLSWKYPKGIHIETLETEKKERYIVISKVDEEERKR------R 206
Query: 202 DEQKIDAEM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
++QK E+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 207 EQQKHAKELEGLNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFK 266
Query: 261 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV 320
FP ++DTK++ + ++ F + +L L P
Sbjct: 267 EMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFN 310
Query: 321 KVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 379
+VE + S + S HEAGYDA++TG F +LG F A ++ +
Sbjct: 311 PPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMADYLG-SFLSPPKIHVSARSKLI 369
Query: 380 REHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWD 439
N L+L ++++ N L +++H V+ FP K D
Sbjct: 370 EPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSD 414
Query: 440 IRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ + S +G I + +D+T+ FV S+ E V
Sbjct: 415 LYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 445
>gi|334333099|ref|XP_001375777.2| PREDICTED: poly(A)-specific ribonuclease PARN [Monodelphis
domestica]
Length = 709
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 110/470 (23%), Positives = 195/470 (41%), Gaps = 70/470 (14%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E + + +
Sbjct: 89 NFYVFPK-PFSRTSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEERQLREQYD 147
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPS 125
E S + + P I+ ++ K D++ E + L++N + +
Sbjct: 148 ---EKRSQSNGAGALSYISPNASKCPVIIPEDQKKFIDKVVEKIEDLIQNEENKN----- 199
Query: 126 FNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIV 185
+ P GF + L+ Q + K+ K + + E VI
Sbjct: 200 ------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVIS 242
Query: 186 YIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 243 KVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTI 297
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 305
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 298 HQFYCPLPEDLSEFKEVTTCVFPRLLDTKLMAS----------------TQPFKDIINNT 341
Query: 306 ALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDF 364
+L L P +VE + S + S HEAGYDA++TG F + LG F
Sbjct: 342 SLAELEKRLKEAPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG-SF 400
Query: 365 KQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFEC 424
A ++ + N L+L ++++ N L +++H
Sbjct: 401 LSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH-------- 446
Query: 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 447 -VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 491
>gi|332845316|ref|XP_510832.3| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
troglodytes]
Length = 639
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVVDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|410217846|gb|JAA06142.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410256666|gb|JAA16300.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410287506|gb|JAA22353.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350583|gb|JAA41895.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350585|gb|JAA41896.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
Length = 639
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVVDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|397525567|ref|XP_003832733.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
paniscus]
Length = 578
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 28 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 84
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 85 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 138
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 139 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 179
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 180 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 234
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 235 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 278
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 279 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 337
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 338 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVVDIPYLNLEGPDL--QPKRDH------ 385
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 386 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 430
>gi|417403544|gb|JAA48572.1| Putative polya-specific exoribonuclease parn [Desmodus rotundus]
Length = 638
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 204/474 (43%), Gaps = 78/474 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 141
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P + ++ K D++ E + LL++ + +
Sbjct: 142 LREQYDEKRLQSNGAGALSYV-SPNTSKCPVTVPEDQKKFIDQVVEKIEDLLQSEENKN- 199
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ P GF + L+ Q + K+ K + + E
Sbjct: 200 ----------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERY 238
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
VI ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+
Sbjct: 239 IVISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDV 293
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H +F PLP EF FP ++DTK++ + ++ F +
Sbjct: 294 MHTVHQFCCPLPEDLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDI 337
Query: 302 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+L L P +VE + S + S HEAGYDA++TG F ++L
Sbjct: 338 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMTNYL 397
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 420
G F A ++ + +N L+L ++++ N L +++H
Sbjct: 398 G-SFLSPPKIHVSARSKLIEPFINKLFLM----RVMDIPYLNLEGPDL--QPKRDH---- 446
Query: 421 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 -----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|224070057|ref|XP_002197536.1| PREDICTED: poly(A)-specific ribonuclease PARN [Taeniopygia guttata]
Length = 638
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/473 (23%), Positives = 198/473 (41%), Gaps = 76/473 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPKP-FNRNSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE----RQLR 143
Query: 68 STYEDE--SLDSWHSLKEIRDTHL---FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
Y+++ + SL I IP+ ++ +++ E + LL+N + S
Sbjct: 144 EQYDEKRSQANGAGSLSYISPNSTKCPVTIPED--QKKFVEKVVEQIEDLLKNEESESLE 201
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
GF + L+ Q + K+ K + + +
Sbjct: 202 --------------------LEPCTGF--QRKLIYQTLSWKYPKGIHVETLESDKKERYI 239
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
VI ++ E K+ ++ EQ+ + ++GF V+ +++ KL++GHN LD+
Sbjct: 240 VITKVDEEERKRREQQKQAKEQE-----ELNDAVGFSRVVHAIANSGKLVIGHNMLLDVM 294
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
H +F+ PLP EF + FP ++DTK++ + ++ F +
Sbjct: 295 HTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTKLMAS----------------TQPFKEMI 338
Query: 303 PQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+L L P +VE + S + S HEAGYDA++TG F + LG
Sbjct: 339 NNTSLAELEKRLKEVPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG 398
Query: 362 IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 421
F + A ++ + N L+L ++++ N L +++H
Sbjct: 399 -SFLSPPKNHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH----- 446
Query: 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 447 ----VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 491
>gi|197102834|ref|NP_001125357.1| poly(A)-specific ribonuclease PARN [Pongo abelii]
gi|60390294|sp|Q5RC51.1|PARN_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|55727812|emb|CAH90659.1| hypothetical protein [Pongo abelii]
Length = 639
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 198/472 (41%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSPPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|355756570|gb|EHH60178.1| Poly(A)-specific ribonuclease PARN, partial [Macaca fascicularis]
Length = 634
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 84 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 140
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 141 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFVDQVVEKIEDLLQSEENKN--- 194
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 195 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 235
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 236 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 290
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 291 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 334
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 335 NTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 393
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 394 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 441
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 442 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 486
>gi|351701243|gb|EHB04162.1| Poly(A)-specific ribonuclease PARN, partial [Heterocephalus glaber]
Length = 617
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/486 (23%), Positives = 200/486 (41%), Gaps = 102/486 (20%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK---- 61
NF++F + P + ++ +F+CQ++S+DFLA FDFN +G+ YL++E+E +
Sbjct: 85 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFCKGIPYLNQEEERQLREQ 141
Query: 62 ------------ALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWL 109
AL +V+ + K+ D + I D+L +E K E
Sbjct: 142 YDEKRSQANGAGALAYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKTLDLEPC 201
Query: 110 GGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLA 169
G R K ++T+ +K + + + K
Sbjct: 202 TGFQR---------------KLIYQTLSWKYPRGVHIETLETE-------------KKER 233
Query: 170 YLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEK 229
Y+ +S N E E ++ K K++++++ ++GF VI +++
Sbjct: 234 YVVISKVN----------EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSG 277
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 289
KL+VGHN LD+ H +F+ PLP +EF FP ++DTK++ +
Sbjct: 278 KLVVGHNMLLDVMHTIHQFYCPLPADLKEFKEMTTCVFPRLLDTKLMAS----------- 326
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFM 348
++ F + +L L P +VE + S + S HEAGYDA++
Sbjct: 327 -----TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYI 381
Query: 349 TGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESL 408
TG F +HLG F + ++ + N L+L ++++ N L
Sbjct: 382 TGLCFISMANHLG-SFLSPPKLHVSSRSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL 436
Query: 409 ASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQF 468
+++H V+ FP K+ D+ + S +G I + +D+T+ FV
Sbjct: 437 --QPKRDH---------VLHVTFPKEWKSSDLYQLFS-AFG---NIQISWIDDTSAFVSL 481
Query: 469 SRAEMV 474
S+ E V
Sbjct: 482 SQPEQV 487
>gi|197333695|ref|NP_001127949.1| poly(A)-specific ribonuclease PARN isoform 2 [Homo sapiens]
gi|194375568|dbj|BAG56729.1| unnamed protein product [Homo sapiens]
Length = 578
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 28 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 84
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 85 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 138
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 139 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 179
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 180 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 234
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 235 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 278
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 279 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 337
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 338 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 385
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 386 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 430
>gi|410917870|ref|XP_003972409.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Takifugu rubripes]
Length = 559
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 116/471 (24%), Positives = 192/471 (40%), Gaps = 73/471 (15%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + + + F+CQ++S+DFLA FDFN G+ YL++E E+ L+
Sbjct: 89 NFYVFPK---PFNRTSPDKKFICQSSSIDFLASQGFDFNKVFCNGIPYLNQE-EEAQLRE 144
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPS 125
T E S + P + K G +E E
Sbjct: 145 --QTEERRS-----------QANGVGTPSYISPSSSK--------GPAHVPEEHKEF--- 180
Query: 126 FNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIV 185
N ++ E +F + L T Q LI + F ++ + + V
Sbjct: 181 INKVIEKVEALFSGTEKTLVLEPCTGFQRKLIYQTLNWKFPKGLHVETIETQKKERFIQV 240
Query: 186 YIESESDKKMLMKEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
E ++K + +QK++ E + ++GF VI+ +S KL+VGHN LD+ H
Sbjct: 241 SRVDEEERKR-----RKQQKLEREQEELNDAVGFSRVINAISQSGKLVVGHNMLLDVMHT 295
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP ++F FP ++DTK++ + ++ F +
Sbjct: 296 IYQFYCPLPEDLQDFKEVTMCVFPRLLDTKLMAS----------------TQPFKEMISN 339
Query: 305 IALGSKSTHLALQPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + HEAGYDA++TG F ++LG
Sbjct: 340 TSLAELEKQLKESPFKPPQVETAEGFPSYDAAKEQLHEAGYDAYITGLCFISMTNYLG-S 398
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
F + A ++ + N L+L II++ N T L KR N
Sbjct: 399 FLTPPKAYISARSKLIEPFFNKLFLM----RIIDIPYLNITGPDLQP-KRDN-------- 445
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ + V
Sbjct: 446 --VLYVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQTDQV 490
>gi|4505611|ref|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [Homo sapiens]
gi|60390262|sp|O95453.1|PARN_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|3776076|emb|CAA06683.1| poly(A)-specific ribonuclease [Homo sapiens]
gi|29477165|gb|AAH50029.1| PARN protein [Homo sapiens]
gi|119605516|gb|EAW85110.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Homo sapiens]
gi|189054660|dbj|BAG37510.1| unnamed protein product [Homo sapiens]
gi|325463607|gb|ADZ15574.1| poly(A)-specific ribonuclease (deadenylation nuclease) [synthetic
construct]
Length = 639
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|325191502|emb|CCA26275.1| Poly(A)specific ribonuclease PARNlike protein putati [Albugo
laibachii Nc14]
Length = 713
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 157/368 (42%), Gaps = 59/368 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSY-------LSREQED 60
NF++F R P F CQ + + FLA++ FDFN I++G+S+ + +++ +
Sbjct: 154 NFYLFPR---PYGHLDRRFSCQASCLQFLAEHDFDFNKFIYDGISFCKLSKVSMMQKRLE 210
Query: 61 KALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRD--E 118
K ++ ED S L + ++ + + E + L+ E
Sbjct: 211 KQVEQYRQQQEDGCKPSVLQLD-------------VQGKKFQQHVREMVDDFLKEETLIE 257
Query: 119 GSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENS 178
G +VQ +SK+ F L TS+Q ++I +R +L S
Sbjct: 258 GVDVQQ--QESKELF------------LEAKTSYQRMIIYQTIRAIDTNL------HAKS 297
Query: 179 CSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCF 238
+ + + + + +KK LM+E ++ + + +IGF VI +L K IVGHN
Sbjct: 298 VDEGIQIRLVTSEEKKQLMEEKLEQMRSET----NEAIGFSRVIQVLKDSNKPIVGHNAL 353
Query: 239 LDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNS---NSILQQRMKKSSTSLS 295
LD +IY +F PLP +EF + FP I DTK + N L+ S
Sbjct: 354 LDFIYIYHQFCQPLPNDLKEFKKELTHSFPKIYDTKYMATHSALNDELESSSLSSLFEFM 413
Query: 296 KAFSVLCPQIALGS----KSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGC 351
K L P + S + H+ALQ E E+D + S + HEAG+DAFMT
Sbjct: 414 KGRIDLPPSTLISSHENFRRYHVALQSESSDEEEMD---QPSKPSPLCHEAGFDAFMTAY 470
Query: 352 VFAQACSH 359
F H
Sbjct: 471 CFLGLLHH 478
>gi|301111876|ref|XP_002905017.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
gi|262095347|gb|EEY53399.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
Length = 589
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 159/358 (44%), Gaps = 62/358 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F R P FLCQ +S+ FL+++ FDFN I +G+ +++ + K +
Sbjct: 118 NFYVFPR---PYGSLDERFLCQASSLQFLSEHGFDFNKFIGDGIPFVNLAKTPAMKKRLQ 174
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ L ++ + + F + +K +L++W+ G
Sbjct: 175 RRID--------GLTKVNKNLQLSDDGMAFQKDVKQQLAKWIAG---------------- 210
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
++ E +F R N F S +++ R +YL + Q + Y+
Sbjct: 211 -GAKKGEKLFVPTR-----NSFYS---MIVHETARAK---ASYLYSEAADGGVQ--VSYL 256
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
+ +++ +VK+ +K + +IGF VI+ LS K +VGHN LD +++ +
Sbjct: 257 SKKMKDELIAAKVKEMRK-----EMDEAIGFSKVIEALSESKLPVVGHNALLDFVYVFHQ 311
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC----- 302
F PLP T EF + + + FP I DTK + S L +++K ST LS F +
Sbjct: 312 FCKPLPETLAEFKTQLLELFPTIYDTK-HVTLRSPLGEKLK--STGLSSLFEYMRENVKP 368
Query: 303 -PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
P+ + S + ++K E + ++ S + HEAG+DAFMT F +H
Sbjct: 369 EPESLIPSDKRFDTYREALKAEADGNE-------SLLCHEAGFDAFMTAVCFLGLLAH 419
>gi|119605517|gb|EAW85111.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Homo sapiens]
Length = 640
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 90 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 146
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 147 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 200
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 201 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 241
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 242 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 296
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 297 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 340
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 341 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 399
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 400 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 447
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 448 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 492
>gi|84994634|ref|XP_952039.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302200|emb|CAI74307.1| hypothetical protein, conserved [Theileria annulata]
Length = 623
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 118/501 (23%), Positives = 203/501 (40%), Gaps = 123/501 (24%)
Query: 17 LPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLS--REQEDKAL----------- 63
+P +G + F ++++FL FDFN+ I +G+++L+ E+E K+L
Sbjct: 171 IPSEGKS--FSVNMSTLNFLKDNNFDFNSWIRDGITHLTPKEEEERKSLIVSKLHQIQLN 228
Query: 64 ------KHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRD 117
+V ST ++++ + + I+D + D E+M +R++EW +L D
Sbjct: 229 LKNLSDSNVESTRNTSNVNTEYDVSSIKD-----LEDRRVVEQMIERINEW---ILVEGD 280
Query: 118 EGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGEN 177
EG R + ++ LL+ V+ + +L N
Sbjct: 281 EG---------------------RAPLEFEVESAFLRLLMHSVISIKYPNLY------SN 313
Query: 178 SCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNC 237
S +N + Y+ +M + E + + + +I +G R + D +S K++VGHNC
Sbjct: 314 SSQRNGVRYVMVYK-TQMELLEEERKLLEEELEAINKQVGLRTLFDKISKNNKILVGHNC 372
Query: 238 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 297
F DI HIY F+G LP E+F + FP I DTK +S+
Sbjct: 373 FYDILHIYQTFYGDLPENVEDFKKKWVQVFPTIFDTKY------------------ISEY 414
Query: 298 FSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGV---------KHEAGYDAFM 348
+ P L S +V E+ + + G +HEAGYD+ M
Sbjct: 415 YQQFTPHTTLKSLYNSFLPNQNVLNRFEISSLGTRGIVCGYGNVLNEAEKEHEAGYDSLM 474
Query: 349 TGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL--YLSWTN-------------G 393
T VF L K ++SS N NL+ YL +N G
Sbjct: 475 TAIVFIH---QLETVIKNKNSSLN-----------NLIKAYLDTSNTANSMGKVIMNIFG 520
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
E++N + S+ + + K + ++GFP+ K W+I K++ P V
Sbjct: 521 EVVNSVRLVKCQPSVINMNNEEDMSKHFY-----MFGFPNVWKKWEIM----KIWSPLWV 571
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
S+ +DET+ ++ +E V
Sbjct: 572 -SISWIDETSCWIIAKNSEDV 591
>gi|355709980|gb|EHH31444.1| Poly(A)-specific ribonuclease PARN, partial [Macaca mulatta]
Length = 634
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 84 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 140
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 141 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 194
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 195 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 235
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 236 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 290
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 291 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 334
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 335 NTSLAELEKRLKEIPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 393
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 394 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 441
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 442 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 486
>gi|327287978|ref|XP_003228705.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Anolis
carolinensis]
Length = 593
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 196/475 (41%), Gaps = 79/475 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF+IF + P + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK---PFNRTSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEERQLQEQ 145
Query: 66 VNSTYEDESLDSWHSL--KEIRDTHLFNIPD--ILFAERMKDRLSEWLGGLLRNRDEGS- 120
S + IP+ F +++ DR+ LL+N + S
Sbjct: 146 YEEKRSQAGRVGSLSFASPNAQSKCPVTIPEDQKTFIDKVVDRVD----TLLQNEESASL 201
Query: 121 EVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS 180
E++P GF + L+ Q + K+ K + + E
Sbjct: 202 ELEP---------------------CTGF--QRKLIYQTLSWKYPKGIHVETLETEKKER 238
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
++ ++ E K+ + EQ+ +K ++GF VI +++ KL+VGHN LD
Sbjct: 239 YIIVSKVDEEERKRREQQRQAKEQE-----ELKDAVGFSRVIHAMANSGKLVVGHNMLLD 293
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +F+ PLP EF FP ++DTK++ + ++ F
Sbjct: 294 VMHTIHQFYCPLPEDLGEFKELTTCVFPRLLDTKLM----------------ATTQPFKD 337
Query: 301 LCPQIALGSKSTHLALQPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
L +L + P VE + S + S HEAGYDA++TG F ++
Sbjct: 338 LISNTSLAELEKRVKETPFSPPNVETAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 397
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F S ++ + N L+L ++++ N L +++H
Sbjct: 398 LG-SFLSPPKSHVSTRSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH--- 447
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ S +G I V +D+T+ FV S+AE V
Sbjct: 448 ------VLYVTFPKEWKTSDLYRLFS-AFG---NIQVSWIDDTSAFVSLSQAEQV 492
>gi|380813232|gb|AFE78490.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|383411569|gb|AFH28998.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|384943224|gb|AFI35217.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
Length = 639
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKEIPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|332240355|ref|XP_003269353.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Nomascus
leucogenys]
Length = 593
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 193/454 (42%), Gaps = 71/454 (15%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLK 82
+F+CQ++S+DFLA FDFN G+ YL++E+E + + Y+++ + +L
Sbjct: 59 KFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRSQANGAGALS 114
Query: 83 EIR-DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMR 141
+ +T +P ++ D++ E + LL++ + + +
Sbjct: 115 YVSPNTSKCPVPIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLE 157
Query: 142 PAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVK 201
P GF + L+ Q + K+ K + + E VI ++ E K+ ++
Sbjct: 158 PC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHA 212
Query: 202 DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFIS 261
EQ+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 213 KEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKE 267
Query: 262 SVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVK 321
FP ++DTK++ + ++ F + +L L P
Sbjct: 268 MTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNP 311
Query: 322 VEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLR 380
+VE + S + S HEAGYDA++TG F ++LG F A ++ +
Sbjct: 312 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIE 370
Query: 381 EHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDI 440
N L+L ++++ N L +++H V+ FP K D+
Sbjct: 371 PFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDL 415
Query: 441 RECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ S +G I + +D+T+ FV S+ E V
Sbjct: 416 YQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 445
>gi|345802287|ref|XP_003434899.1| PREDICTED: poly(A)-specific ribonuclease PARN [Canis lupus
familiaris]
Length = 592
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/455 (23%), Positives = 193/455 (42%), Gaps = 73/455 (16%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLK 82
+F+CQ++S+DFLA FDFN G+ YL+ E+E + + Y+++ L S +L
Sbjct: 59 KFVCQSSSIDFLASQGFDFNKVFRNGIPYLNHEEE----RQLREQYDEKRLQSNGAGALS 114
Query: 83 EIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKM 140
+ + P + ++ K D++ E + LL Q E+ +
Sbjct: 115 YV-SPNTSKCPVTIPEDQKKFIDQVVEKIENLL-----------------QSEESKNLDL 156
Query: 141 RPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEV 200
P GF + L+ Q + K+ K + + E VI ++ E K+ +++
Sbjct: 157 EPC---TGF--QRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKL 211
Query: 201 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
EQ+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 212 AKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFK 266
Query: 261 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV 320
FP ++DTK++ + ++ F + +L L P
Sbjct: 267 EMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFN 310
Query: 321 KVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 379
+VE + S + + HEAGYDA++TG F ++LG F A ++ +
Sbjct: 311 PPKVESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLI 369
Query: 380 REHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWD 439
N L+L ++++ N L +++H V+ FP K D
Sbjct: 370 EPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSD 414
Query: 440 IRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ + S +G I + +D+T+ FV S+ E V
Sbjct: 415 LYQLFS-AFG---NIHISWIDDTSAFVSLSQPEQV 445
>gi|189240485|ref|XP_967921.2| PREDICTED: similar to Parn-A protein [Tribolium castaneum]
gi|270011407|gb|EFA07855.1| hypothetical protein TcasGA2_TC005425 [Tribolium castaneum]
Length = 584
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 201/474 (42%), Gaps = 96/474 (20%)
Query: 7 HNFFIFQRQELPLDG--AAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF+IF+R P++ FLCQT+S++FL FDFN G+SYL+ +E
Sbjct: 84 YNFYIFRR---PINNNIPDQRFLCQTSSINFLMSQGFDFNKLFKFGISYLNISEESG--- 137
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
+ + E + S + ++ + IPD + + + D + L L + D+ E+
Sbjct: 138 YRDKLEERKKFRSNQNNTPQQNQDIVPIPDDV--QPVVDDFMKRLSDFLESDDDELELP- 194
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
N F LI + F + L + +N ++
Sbjct: 195 --------------------KCNAFVRR---LIYQTTGQKFTNKIVLH-TKQNKNKDRIL 230
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
V S+ K +E++ + ++ IGF V+ ++ KLIVGHN LD H
Sbjct: 231 V--ASKCKTKEEQQEIEKRLFEEELTNLDDFIGFTKVLRIIVESGKLIVGHNMCLDFLHT 288
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN---SILQQRMKKSS-TSLSKAFSV 300
KF PL + EEF + F +++DTK + +S+ ++Q + KS ++SK
Sbjct: 289 IDKFLTPLSVNYEEFKDCAHSLFRNVLDTKFMSSSDEFKDLIQSTVLKSVLETVSK---- 344
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-------VDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
T A+ P VEVE V+D++ +HEAGYDA++TG F
Sbjct: 345 -----------TPFAIPP---VEVEKGGQGYFVEDLK--------EHEAGYDAYITGLCF 382
Query: 354 AQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW-TNGEIINLSTGNRTSESLASNK 412
++LG K+ S E L+ ++N L+L + + INL G+ N
Sbjct: 383 ISMWNYLGT-LKKLSIEETFKDFALLKPYLNKLFLMMLRDSQYINLEGGD-------PNP 434
Query: 413 RKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFV 466
++H V FP K +I E ++ P + V ++ET+ +V
Sbjct: 435 PRDH---------VFYLTFPKEWKQSNIIE----LFSPFGGVYVSWINETSAYV 475
>gi|71894805|ref|NP_001025800.1| poly(A)-specific ribonuclease PARN [Gallus gallus]
gi|53133784|emb|CAG32221.1| hypothetical protein RCJMB04_20e14 [Gallus gallus]
Length = 574
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 202/474 (42%), Gaps = 78/474 (16%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF+IF + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 28 NFYIFPK---PFNRSSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE----RQ 80
Query: 66 VNSTYEDE--SLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ + SL I + P ++ ++ K D++ E + L+N + S
Sbjct: 81 LREQYDEKRSQANGAGSLSYI-SPNATKCPVVIPEDQKKIIDKIVEQIEEFLKNEENESL 139
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
GF + L+ Q + K+ K + + +
Sbjct: 140 E--------------------LEPCTGF--QRKLIYQTLSWKYPKGIHVETLESDKKERY 177
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
VI ++ E K+ ++ EQ+ + ++GF V+ +++ KL++GHN LD+
Sbjct: 178 IVISKVDEEERKRREQQKQAKEQE-----ELNDAVGFSRVVHAIANSGKLVIGHNMLLDV 232
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H +F+ PLP EF + FP ++DTK++ + ++ F +
Sbjct: 233 MHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTKLMAS----------------TQPFKDI 276
Query: 302 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+L L P +VE + S + S HEAGYDA++TG F + L
Sbjct: 277 INNTSLAELEKRLKEVPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFL 336
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 420
G F + A ++ + N L+L ++++ N L +++H
Sbjct: 337 G-SFLSPPKNHVSARSKLIEPFFNKLFLM----RVMDIPYLNLQGPDL--QPKRDH---- 385
Query: 421 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 386 -----VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 430
>gi|47218930|emb|CAF98128.1| unnamed protein product [Tetraodon nigroviridis]
Length = 614
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 152/360 (42%), Gaps = 56/360 (15%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF+IF + P + + + F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 84 NFYIFPK---PFNRTSPDKKFICQSSSIDFLASQGFDFNKVFCNGIPYLNQEEEAQLREQ 140
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNI--PDILFAERMKDRLSEWLGGLLRNRDEGSEVQ 123
+E R+ H + P + K G DE +
Sbjct: 141 T---------------EERRNQHANGVGTPSYISPSSSK--------GPAHVPDEHKDF- 176
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
N ++ E +F ++ L T Q LI + F ++ + +
Sbjct: 177 --INKVIERVEALFGSSEKSLDLEPCTGFQRKLIYQTLNWKFPKGLHVETIETQKKERFI 234
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
V E ++K +++QK++ E + ++GF VI +S KL+VGHN LD+
Sbjct: 235 QVSKVDEEERKK-----REQQKLEREQEELNDAVGFSRVIHAISQSGKLVVGHNMLLDVM 289
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
H +F+ PLP +EF FP ++DTK++ + ++ F L
Sbjct: 290 HTIHQFYCPLPEELQEFKEVTMCVFPRLLDTKLMAS----------------TQPFKELI 333
Query: 303 PQIALGSKSTHLALQPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+L L +P +VE + S + HEAGYDA++TG F ++LG
Sbjct: 334 SNTSLAELEKQLKEKPFKPPQVETAEGFPSYDAAKEQLHEAGYDAYITGLCFISMTNYLG 393
>gi|429327871|gb|AFZ79631.1| hypothetical protein BEWA_024800 [Babesia equi]
Length = 582
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 123/491 (25%), Positives = 207/491 (42%), Gaps = 112/491 (22%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLS--REQEDKA-----LKHVNSTYE--DESLD 76
F T+++ FL FDFN+ I GV +L EQE K LK + E +
Sbjct: 118 FKVNTSTISFLKDNNFDFNSWIRNGVLHLKPHEEQEKKKVIEERLKELQQMLEMSKSNTK 177
Query: 77 SWHSLKEIRDTHLFNIPD---ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQF 133
S S+K ++ ++ IPD A + +++ EW+ + +++P
Sbjct: 178 SKPSVKPVK-FNMSTIPDENDRNTAISVMNKIEEWI--------DSDDIKP--------- 219
Query: 134 ETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDK 193
+ + ++ Q LL+ ++ + + + S + + +Y +SE
Sbjct: 220 ----------LEIPMESAFQRLLMHTIIGQQYPQI--FSHSTRRGNDKALCIY-KSEY-- 264
Query: 194 KMLMKEVKDEQ--KIDAEM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFG 250
E+ +EQ ++ +EM S+ +G R ++D +S+ KK+IVGHNCF DI HIY F+
Sbjct: 265 -----ELYNEQILQLKSEMASVDEEVGLRLLLDAISANKKIIVGHNCFYDILHIYQTFYK 319
Query: 251 PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC-------- 302
LP + +EF + PH DTK + S I +ST+L F LC
Sbjct: 320 DLPESVQEFKDAWISKHPHTFDTKYIAESQDIFSNN---TSTTLKGLFDHLCATEVGKSV 376
Query: 303 -------PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 355
P +T L + D I N +S H+AGYD+FMT VF
Sbjct: 377 EFVIKPLPNTTWNVPTTLYPLISKRYLNTCGDLINDINVDSVAMHDAGYDSFMTSIVFIL 436
Query: 356 ACSHL----GIDFK---QQSSSENLAHNEKLREH-------------VNLLYLSWTNGEI 395
+ + K +Q++ E E R + VN + L + +
Sbjct: 437 QVNAILRSKNTTIKSILEQNTKETRYEGELPRGNHGINKLMSMLEGVVNSIRLVKSQPNV 496
Query: 396 INLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVIS 455
+NL N++SE N H+ ++GFP+ K W+ I+K++ P IS
Sbjct: 497 MNL---NKSSE----NDMARHF---------YMFGFPNTWKKWE----ITKIWSPL-WIS 535
Query: 456 VYHVDETAVFV 466
+ +DET+ ++
Sbjct: 536 ISWIDETSCWI 546
>gi|348686050|gb|EGZ25865.1| hypothetical protein PHYSODRAFT_540459 [Phytophthora sojae]
Length = 606
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 157/358 (43%), Gaps = 62/358 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F R P FLCQ +S+ FL+++ FDFN I +G+ +++ + K +
Sbjct: 127 NFYVFPR---PYGSLDERFLCQASSLQFLSEHGFDFNKFIGDGIPFVNLAKTPVMKKRLQ 183
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ L ++ + + F + + ++L +W+ G
Sbjct: 184 RRID--------GLTKVNKNLQLSDDGVAFQKDVNEQLDQWIAG---------------- 219
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
++ E + R N F S +++ VR +YL + + Y+
Sbjct: 220 -GAKKGEKLLVPTR-----NSFYS---MVVHETVRSK---ASYLYSEAAEGGVE--VSYV 265
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
+ ++++ +VKD ++ + +IGF VI+ LS K +VGHN LD +++ +
Sbjct: 266 SKKIKEELIAAKVKDMRR-----EMDEAIGFSKVIEALSESKLPVVGHNALLDFVYVFHQ 320
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC----- 302
F+ PLP T EF + + FP I DTK + S L ++K ST LS F +
Sbjct: 321 FYKPLPETLAEFKTQLLGLFPTIYDTK-HVTLRSPLGDKLK--STGLSSLFEYMRENVKP 377
Query: 303 -PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
P+ + S + ++K E + ++ S + HEAG+DAFMT F +H
Sbjct: 378 EPESLIPSDEHFDTYRQALKAEADGNE-------SLLCHEAGFDAFMTAVCFLGLLAH 428
>gi|332845320|ref|XP_003315023.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
troglodytes]
gi|397525569|ref|XP_003832734.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
paniscus]
Length = 593
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 105/452 (23%), Positives = 188/452 (41%), Gaps = 69/452 (15%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F+CQ++S+DFLA FDFN G+ YL++E+E + + + E S +
Sbjct: 60 FVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYV 116
Query: 86 DTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
+ P + ++ K D++ E + LL++ + + + P
Sbjct: 117 SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC 159
Query: 144 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDE 203
GF + L+ Q + K+ K + + E VI ++ E K+ ++ E
Sbjct: 160 ---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKE 214
Query: 204 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 263
Q+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 215 QE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMT 269
Query: 264 NKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 323
FP ++DTK++ + ++ F + +L L P +
Sbjct: 270 TCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPK 313
Query: 324 VE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 382
VE + S + S HEAGYDA++TG F ++LG F A ++ +
Sbjct: 314 VESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPF 372
Query: 383 VNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRE 442
N L+L ++++ N L +++H V+ FP K D+ +
Sbjct: 373 FNKLFLM----RVVDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQ 417
Query: 443 CISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
S +G I + +D+T+ FV S+ E V
Sbjct: 418 LFS-AFG---NIQISWIDDTSAFVSLSQPEQV 445
>gi|198418498|ref|XP_002129059.1| PREDICTED: similar to poly(A)-specific ribonuclease [Ciona
intestinalis]
Length = 642
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 150/361 (41%), Gaps = 48/361 (13%)
Query: 8 NFFIFQ-RQELPLDGAAYE-FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF+IF R P G F CQ +S+DFL FDFN I EG+ +L R E+ +++
Sbjct: 86 NFYIFPFRSSFP--GVPDRIFSCQASSLDFLTLQDFDFNKAIKEGIPFL-RPSEEASVRS 142
Query: 66 V---NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
Y + S + + P ++ +E + ++N E +E
Sbjct: 143 AIEEKQAYRQSTYKSPAKFDGVGRSPSSKGPSTPITDQKTKDFTEKVVAKIKNFLENTE- 201
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
DS+ E +R ++L + K L R +
Sbjct: 202 -----DSEIVLEPCNSYLR-----------KILFENIPAAFPGKILVESRTDEQTHQRHI 245
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
V+V S S L KE + K+ E +++ ++GF ++ LS +KLIVGHN LD+
Sbjct: 246 VVVRGASAS----LQKERNLQAKVKEESNLEEAVGFSKIVKKLSQSQKLIVGHNMLLDVF 301
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
+ +F PLP EEF S V FP ++DTK++ S+L F L
Sbjct: 302 YTIQQFVCPLPDVLEEFKSLVGCVFPKLLDTKLM---GSML-------------PFRDLL 345
Query: 303 PQIALGSKSTHLALQPSVKVEVEVD---DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
ALG + L P ++ V ++ S+ HEA YDA++TG F ++
Sbjct: 346 STTALGDMNARLREPPFQPPDITVPGKYNVGSTKSQDSNLHEAAYDAYVTGSAFLSMVNY 405
Query: 360 L 360
L
Sbjct: 406 L 406
>gi|390345831|ref|XP_003726420.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Strongylocentrotus
purpuratus]
Length = 536
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 164/392 (41%), Gaps = 83/392 (21%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R LD F CQ +S++FL K+ F+FN +EGVSYL+R++E++
Sbjct: 86 YNFHLFPRSISSLDA---RFTCQASSIEFLCKHNFNFNKLFYEGVSYLTRDEEEELRSQA 142
Query: 67 NST------YEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGS 120
+ Y DE L KE T +SEWL S
Sbjct: 143 QTKPVQLARYMDEDLQ-----KEAIST-----------------ISEWL----------S 170
Query: 121 EVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS 180
E + Q+E L+G LL+QLV++ F L + + +
Sbjct: 171 EAHAGDELTVGQYE----------ELDG------LLLQLVIQDSF---PLLNTCFDATTT 211
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
+ + V + + +K+ L + D+ K+ + + +GF V L KK I+GHN D
Sbjct: 212 RQMKVRVMATENKEGLEE---DQVKLGHRV-VDKLLGFTAVFRALVESKKPIIGHNLLTD 267
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL---LNSNSILQQRMKKSSTSLSKA 297
+ + KF PLP + F +N+ FP I DTK L + N ++ + +TSL
Sbjct: 268 LMLFFQKFHNPLPRSYSTFKVQLNELFPKIYDTKYLSFEMRRN-LIDAGLPVQNTSLGSL 326
Query: 298 FSVLCPQ--IALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 355
L + I + S H+ V N G HEAGYDA+ G VF +
Sbjct: 327 LDNLSTKEGILIVLHSPHIVHGSGFDKYV----------NGGTLHEAGYDAYAAGYVFLR 376
Query: 356 ACSHLGIDFKQQSSSENLAHNE---KLREHVN 384
++ +S L E KL+++VN
Sbjct: 377 LAHYITAKDINVMASRPLDFREYMWKLKDYVN 408
>gi|339715201|ref|NP_001229921.1| poly(A)-specific ribonuclease PARN isoform 3 [Homo sapiens]
gi|194377130|dbj|BAG63126.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/452 (23%), Positives = 188/452 (41%), Gaps = 69/452 (15%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F+CQ++S+DFLA FDFN G+ YL++E+E + + + E S +
Sbjct: 60 FVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYV 116
Query: 86 DTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
+ P + ++ K D++ E + LL++ + + + P
Sbjct: 117 SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC 159
Query: 144 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDE 203
GF + L+ Q + K+ K + + E VI ++ E K+ ++ E
Sbjct: 160 ---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKE 214
Query: 204 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 263
Q+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 215 QE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMT 269
Query: 264 NKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 323
FP ++DTK++ + ++ F + +L L P +
Sbjct: 270 TCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPK 313
Query: 324 VE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 382
VE + S + S HEAGYDA++TG F ++LG F A ++ +
Sbjct: 314 VESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPF 372
Query: 383 VNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRE 442
N L+L ++++ N L +++H V+ FP K D+ +
Sbjct: 373 FNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQ 417
Query: 443 CISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
S +G I + +D+T+ FV S+ E V
Sbjct: 418 LFS-AFG---NIQISWIDDTSAFVSLSQPEQV 445
>gi|393716306|ref|NP_001257344.1| poly(A)-specific ribonuclease PARN [Rattus norvegicus]
gi|306415570|gb|ADM86746.1| poly(A)-specific ribonuclease [Rattus norvegicus]
Length = 624
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 109/469 (23%), Positives = 197/469 (42%), Gaps = 75/469 (15%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQF- 146
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
DE + + + IP+ ++ D++ E + G L+ ++ +
Sbjct: 147 ----DEKRSQANGAGALTKCPV-TIPED--QKKFIDQVIEKIEGFLQREEKRT------- 192
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
+ LN T Q LI Q + K+ K + + + VI
Sbjct: 193 ----------------LELNPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISK 236
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 237 VDEEERKRREQEKYAKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIH 291
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
+F+ PLP+ EF FP ++DTK++ + ++ F + +
Sbjct: 292 QFYCPLPVDLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTS 335
Query: 307 LGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFK 365
L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 336 LAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLS 395
Query: 366 QQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECI 425
+ + A ++ + N L+L ++++ N L +++H
Sbjct: 396 PPKTCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH--------- 439
Query: 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 440 VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|354468611|ref|XP_003496746.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Cricetulus
griseus]
Length = 633
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/468 (23%), Positives = 197/468 (42%), Gaps = 73/468 (15%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E +H+
Sbjct: 89 NFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEE----RHLR 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ DE + + + IP+ + D++ E + L+N+++ S
Sbjct: 144 EQF-DEKRSQANGAGALAKCPV-TIPED--QRKFIDQVIEKIENFLQNKEKKS------- 192
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
+ P GF + L+ Q + K K + + E VI +
Sbjct: 193 ----------LDLEPC---TGF--QRKLIYQTLSWKFPKGIHVETLETEKKERHIVISKV 237
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
+ E K+ ++ EQ+ + ++GF VI +++ +KL+VGHN LD+ H +
Sbjct: 238 DEEERKRREQEKYAKEQE-----ELNDAVGFSRVIHAIANSRKLVVGHNMLLDVMHTIHQ 292
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 293 FYCPLPADLNEFKEMTICVFPRLLDTKLMAS----------------TQPFKDIINNTSL 336
Query: 308 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 337 AELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLGP 396
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
+ A ++ + N L+L ++++ N L +++H V
Sbjct: 397 PKVCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 440
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 441 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|354468609|ref|XP_003496745.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Cricetulus
griseus]
Length = 625
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/468 (23%), Positives = 197/468 (42%), Gaps = 73/468 (15%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E +H+
Sbjct: 89 NFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEE----RHLR 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ DE + + + IP+ + D++ E + L+N+++ S
Sbjct: 144 EQF-DEKRSQANGAGALAKCPV-TIPED--QRKFIDQVIEKIENFLQNKEKKS------- 192
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
+ P GF + L+ Q + K K + + E VI +
Sbjct: 193 ----------LDLEPC---TGF--QRKLIYQTLSWKFPKGIHVETLETEKKERHIVISKV 237
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
+ E K+ ++ EQ+ + ++GF VI +++ +KL+VGHN LD+ H +
Sbjct: 238 DEEERKRREQEKYAKEQE-----ELNDAVGFSRVIHAIANSRKLVVGHNMLLDVMHTIHQ 292
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 293 FYCPLPADLNEFKEMTICVFPRLLDTKLMAS----------------TQPFKDIINNTSL 336
Query: 308 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 337 AELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLGP 396
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
+ A ++ + N L+L ++++ N L +++H V
Sbjct: 397 PKVCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 440
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 441 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|156085621|ref|XP_001610220.1| CAF1 family ribonuclease containing protein [Babesia bovis]
gi|154797472|gb|EDO06652.1| CAF1 family ribonuclease containing protein [Babesia bovis]
Length = 551
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 186/465 (40%), Gaps = 96/465 (20%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSR----------EQEDKALKHVNSTYEDESL 75
F T+++ FL FDF++ IH GV +L+ EQ K L H+ ++
Sbjct: 96 FKVSTSTLQFLKDNNFDFHSWIHHGVEHLTPSEESDLKFAIEQRKKELDHMLQQAPPDT- 154
Query: 76 DSWHSLKEIR-DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFE 134
++K + D D L AER +R+ W+ +G+ + E
Sbjct: 155 ----AVKGVDFDLSSLGADDRLMAERTIERIQTWIS-------DGTSAPLEI-----EME 198
Query: 135 TIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKK 194
+ F Q LL+ ++ + F + + VI +S+ +
Sbjct: 199 SAF---------------QRLLMHTIIGQQFPQVY---SHSARRGDERVICVYKSQIE-- 238
Query: 195 MLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPL 254
L KE + D E I IG R + D + + K++VGHNCF DI H+Y F+G LP
Sbjct: 239 -LYKEQLSTLETDIE-RINEQIGVRVLFDEIVNNGKILVGHNCFYDILHVYQTFYGELPE 296
Query: 255 TAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA-------- 306
EEF S + F + DTK + + + + S +L F +C +
Sbjct: 297 GVEEFRKSWTERFRNTFDTKYIGEFHESVA--APQHSATLRGLFDHMCSTESANKAGQRF 354
Query: 307 ----LGSKSTHLALQPSVKVEV----EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 358
L S HL PS + + DI ++ + H+AGYD+FMT VF C
Sbjct: 355 RVHTLPGTSWHL---PSTVLPLLDNGTSTDISTNTGKTTQSHDAGYDSFMTCLVFILQCD 411
Query: 359 ------HLGIDFKQQSSSENLAHN---EKLREHVNLLYLSWTNGEIINLSTGNRTSESLA 409
HL D +++L HN + L N + L + INLS S+
Sbjct: 412 RILRSKHLKWDRLASDGTDHLDHNTLLDNLSSVSNCIRLVKSQPNAINLS-------SIR 464
Query: 410 SNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVI 454
+ ++ ++ G+P+ + WDI + S ++ SVI
Sbjct: 465 QSDMARYF---------LMSGYPNSWRKWDIMKVWSPLWVSVSVI 500
>gi|71031200|ref|XP_765242.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352198|gb|EAN32959.1| hypothetical protein, conserved [Theileria parva]
Length = 624
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 134/520 (25%), Positives = 224/520 (43%), Gaps = 101/520 (19%)
Query: 17 LPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLS--REQEDKAL----------- 63
+P +G + F ++++FL FDFN+ I G+++L+ E+E K+L
Sbjct: 171 IPSEGKS--FSVNMSTLNFLKDNNFDFNSWIRNGITHLTPKEEEERKSLIVSKLHQIRLN 228
Query: 64 --KHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSE 121
NS E+ ++ + E + + ++ D E+M +R+++W+ DEG E
Sbjct: 229 LQNLSNSNIENNGRNTNNMNTEYDVSSIKDLEDRRVVEQMIERINKWI------VDEGDE 282
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+ + + E+ F + LL+ V+ + +L Y S N +
Sbjct: 283 GRKPL---EFEVESAFLR---------------LLMHSVISIKYPNL-YSNSSQRNGV-R 322
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
V+VY +M + E + + + +I IG R + D +S K++VGHNCF DI
Sbjct: 323 CVVVY-----KTQMELLEEERKVLEEELEAINKQIGLRTLFDTVSKNNKILVGHNCFYDI 377
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
HIY F+G LP E+F + FP I DTK + + Q T+L ++
Sbjct: 378 LHIYQTFYGDLPENVEDFKKKWVQVFPTIFDTKYI---SEYYHQFT--PHTTLKSLYNSF 432
Query: 302 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVFAQACSHL 360
P ++ +L S V D I N G K HEAGYD+ MT VF + L
Sbjct: 433 LPNQNGFNRVKISSLGKSGMVSGYGDVI-----NEGEKEHEAGYDSLMTAIVFIR---QL 484
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLL--YLSWTN-------------GEIINLSTGNRTS 405
K ++SS N NL+ YL +N GEI+N +
Sbjct: 485 ETVIKSKNSSLN-----------NLINAYLDTSNTPNGMGKVIRNIFGEIMNSVRLVKCQ 533
Query: 406 ESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVF 465
S+ + + K + ++GFP+ K W+I K++ P V S+ +DET+ +
Sbjct: 534 PSVINMNNEEDMSKHFY-----MFGFPNVWKKWEIM----KIWSPLWV-SISWIDETSCW 583
Query: 466 VQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGN 505
+ +E V K ++L + +N P L+ + LE N
Sbjct: 584 IIAKNSEDV-KNINLIYKMMKN--PQFKLYNYGQYLEKMN 620
>gi|307192585|gb|EFN75773.1| Poly(A)-specific ribonuclease PARN [Harpegnathos saltator]
Length = 600
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 171/395 (43%), Gaps = 77/395 (19%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+ F++F +Q L F+CQ +S+ FLA FDFN G+ YL+ +E+K +K
Sbjct: 84 YTFYVFPKQ-LNYRAPDCRFMCQASSIAFLASQNFDFNKLFKHGIPYLNINEEEKLIK-- 140
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSE-VQPS 125
RM++R R ++E ++ V P
Sbjct: 141 ---------------------------------RMEERQ--------RQKEEYNDAVIPI 159
Query: 126 FNDSKQQFETIFFKM-------RPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENS 178
+ K Q E I K+ + +++ LI + + D + EN+
Sbjct: 160 SDTDKPQIEEICSKIEDFLASDKEELTIERCNKFMRRLIYQEAKNRWPDKVRIESKIENT 219
Query: 179 CSQNVIVYIESESDKKMLMKEVKDEQKIDAE-MSIKASIGFRHVIDLLSSEKKLIVGHNC 237
+ + ++ +E K+ Q+ + E + ++G +++ + + K IVGHN
Sbjct: 220 WQCLSVQKVGTKE-----QEEAKENQRREKEKLEFDQAVGVSNLLKKVLNSGKTIVGHNM 274
Query: 238 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 297
LD+ HI +F PLP EF + V+ FP ++DTK++ S ++ + SST+L+
Sbjct: 275 LLDLCHIIRQFVTPLPADYSEFKNLVHDLFPSLLDTKVICQSQP-FKEHISPSSTNLNTL 333
Query: 298 FSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK--HEAGYDAFMTGCVFAQ 355
++ +P + +V+ I +++ + HEAGYDA++TG F
Sbjct: 334 LKIMS--------------KPPFSIP-DVEPIEGCSYSISTEKLHEAGYDAYITGLCFIA 378
Query: 356 ACSHLG-IDFKQQSSSENLAHNEKLREHVNLLYLS 389
++LG I + ++ E LA + L+ +N L +S
Sbjct: 379 LSNYLGTIKQSEDAADEVLADSSLLKPFLNKLPVS 413
>gi|363731664|ref|XP_426152.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Gallus gallus]
Length = 577
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/437 (22%), Positives = 179/437 (40%), Gaps = 94/437 (21%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F L E T+S+ FL+ Y FD+N + +G+ Y++ QE+ + +
Sbjct: 132 YNFFLFPST---LGVTDAELTLSTSSIQFLSHYGFDYNKFLKDGIPYMNELQENILSQRL 188
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+W + ++ ++ D ++ W+ EG V
Sbjct: 189 LE-------GNWKVCSAL---------NLNVVKKAIDEVTCWIAA----AKEGDTV---- 224
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
L + Q+L +QLV+R+ ++ + + G+N V+V
Sbjct: 225 ------------------ILQDLSDSQMLDVQLVLRQALPNV-WTQPLGDNE----VMVK 261
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S +++L E E+ + ++ GF ++ ++ KK +VGHN +D+ H++
Sbjct: 262 KVSLQHRRLL--ESSSHDSCQKELILTSARGFTNLFQIIVRAKKPLVGHNMLMDLCHLHD 319
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL----- 301
KF+ PLP + EEF +++ FP +IDTK + + SI + ++L + + VL
Sbjct: 320 KFYNPLPESYEEFKKNIHHLFPVLIDTKTV--TKSIWKNYQFPRVSNLLEVYEVLCSSDL 377
Query: 302 ------CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 355
CP IA S S A HEA YDAF+ G V +
Sbjct: 378 NPVDPACPVIAFASDSARYA-------------------EKAAPHEAAYDAFLCGSVLLK 418
Query: 356 ACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKN 415
+ L + +++ N + ++ L + + N +N G +S + +
Sbjct: 419 SAHLLLCELTDDAATANPSFSQYLT-----MLAEYFNK--VNFIRGGVSSINFSGEDASC 471
Query: 416 HYPKILFECIVIVWGFP 432
YP L +V V G+P
Sbjct: 472 RYPPPL---VVCVRGWP 485
>gi|449277827|gb|EMC85849.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1, partial [Columba livia]
Length = 485
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 104/374 (27%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF++F +D EF +S+ FL+ Y FD+N + +G+ Y++ EQE +H+
Sbjct: 43 YNFYLFPATLGVMD---VEFTLSASSIQFLSHYGFDYNKFLKDGIPYMNEEQEKIFSQHL 99
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ SW ++ D+L ++ D ++ W+ D+
Sbjct: 100 LA-------GSWKVSSDLDR-------DVL--KKAIDEVTCWIAA--AEEDD-------- 133
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
+ L+ + +Q+ +QLV+R+ ++ V+
Sbjct: 134 ----------------TMVLHDLSGYQMFEVQLVLRQALQN-----------------VW 160
Query: 187 IESESDKKMLMKEVKDEQK----------IDAEMSIKASIGFRHVIDLLSSEKKLIVGHN 236
+ DKK+++K+V + + E+ + ++ GF ++ L KK +VGHN
Sbjct: 161 TQPLGDKKVIVKKVSFQHRQLLENSPHDCCQKELILLSARGFTNLFQTLVKAKKPLVGHN 220
Query: 237 CFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSK 296
+D+ H++ KF+ PLP + EEF +++ FP +IDTK + + SI ++ ++L +
Sbjct: 221 MLMDLMHLHDKFYKPLPESYEEFKRNIHILFPVLIDTKTI--TKSIWKKYPFPRVSNLLE 278
Query: 297 AFSVLC----------PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDA 346
+ VLC P I L S + A + S HEAGYDA
Sbjct: 279 VYEVLCRNLNPTDPASPVITLASDCSRYAEKKS-------------------PHEAGYDA 319
Query: 347 FMTGCVFAQACSHL 360
F+ G V ++ +HL
Sbjct: 320 FLCGSVLLKS-AHL 332
>gi|156384950|ref|XP_001633395.1| predicted protein [Nematostella vectensis]
gi|156220464|gb|EDO41332.1| predicted protein [Nematostella vectensis]
Length = 449
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 163/353 (46%), Gaps = 60/353 (16%)
Query: 5 GRHNFFIFQRQELPLD-GAA-YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKA 62
GR+ +F P GAA FLCQ +S++FL ++ FDFN +++GV +L+ EQE
Sbjct: 81 GRYKAHVFNCYLFPCSFGAADCRFLCQASSLEFLCQHDFDFNKFVYQGVPFLNEEQESM- 139
Query: 63 LKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
V S + ++L + ++RD I D + + +++ EW L+ + G +
Sbjct: 140 ---VRSQHNQKTLHAGMQSLQLRD-----IDDQIISCSC-NKVDEW----LKTANIGDNM 186
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+ + + Q+ + +++ ++N +R +DL + ++ + +CS+
Sbjct: 187 TLNAHTAVGQY-LLLLELQKQSTMNQ------------LRYEVQDLYQIVITRQTNCSEE 233
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
+ +E ++++L+ + IGF + LL KK ++GHN F D+
Sbjct: 234 AMKKHLAEQEERILL----------------SVIGFSRIFKLLVKHKKPLIGHNMFTDLM 277
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL---LNSNSILQQRMKKSSTSLSKAFS 299
IY K + PLP ++F + +++ FP++ DTK + + L++ ST+L
Sbjct: 278 LIYDKLYKPLPDCYDDFKADIHRLFPYVYDTKHIAFKIRKQPQLKECEFLDSTNLEDL-- 335
Query: 300 VLCPQIALGSKST--HLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTG 350
Q AL S+ ++ P + + N HEAGYD+++ G
Sbjct: 336 ----QTALESREAKYYVLYNPLITLSKSAQRYEYENH----PHEAGYDSYLAG 380
>gi|395515097|ref|XP_003761743.1| PREDICTED: poly(A)-specific ribonuclease PARN [Sarcophilus
harrisii]
Length = 667
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 50/357 (14%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E + + +
Sbjct: 107 NFYVFPK-PFSRTSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEERQLREQYD 165
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPS 125
E S + + P ++ ++ K +++ E + L++N + +
Sbjct: 166 ---EKRSQSNGAGALSYVSPNASKCPVVIPEDQKKFIEKVVEKIEDLIQNEENKN----- 217
Query: 126 FNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIV 185
+ P GF + L+ Q + K+ K + + E VI
Sbjct: 218 ------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVIS 260
Query: 186 YIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 261 KVDEEERKRREQQKYAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTI 315
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 305
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 316 HQFYCPLPEDLNEFKEVTTCVFPRLLDTKLMAS----------------TQPFKDIINNT 359
Query: 306 ALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+L L P +VE + S + S HEAGYDA++TG F + LG
Sbjct: 360 SLAELEKRLKEAPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG 416
>gi|354468613|ref|XP_003496747.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Cricetulus
griseus]
Length = 590
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 191/451 (42%), Gaps = 72/451 (15%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
+F+CQ++S+DFLA FDFN G+ YL++E+E +H+ + DE + +
Sbjct: 62 KFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEE----RHLREQF-DEKRSQANGAGAL 116
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
+ IP+ + D++ E + L+N+++ S + P
Sbjct: 117 AKCPV-TIPED--QRKFIDQVIEKIENFLQNKEKKS-----------------LDLEPC- 155
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
GF + L+ Q + K K + + E VI ++ E K+ ++ EQ
Sbjct: 156 --TGF--QRKLIYQTLSWKFPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQ 211
Query: 205 KIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 264
+ + ++GF VI +++ +KL+VGHN LD+ H +F+ PLP EF
Sbjct: 212 E-----ELNDAVGFSRVIHAIANSRKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTI 266
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
FP ++DTK++ + ++ F + +L L P +V
Sbjct: 267 CVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKV 310
Query: 325 E-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHV 383
E + S + S HEAGYDA++TG F ++LG + A ++ +
Sbjct: 311 ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLGPPKVCVS-ARSKLIEPFF 369
Query: 384 NLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIREC 443
N L+L ++++ N L +++H V+ FP K D+ +
Sbjct: 370 NKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQL 414
Query: 444 ISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
S +G I + +D+T+ FV S+ E V
Sbjct: 415 FS-AFG---NIQISWIDDTSAFVSLSQPEQV 441
>gi|194227480|ref|XP_001491677.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Equus caballus]
Length = 627
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 155/354 (43%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH N
Sbjct: 186 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH-N 240
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ S+ S PD + + D ++ WL D +E
Sbjct: 241 ILTGNWSVHS--------------SPDKDQIKVVIDEVTRWL-------DLAAEGD---- 275
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ D+ LR Q V+V
Sbjct: 276 ---------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQGVVVK 313
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 314 KVSKQHRWYLENTSGDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 373
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + E+F +V+ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 374 KFFRPLPESYEQFKLNVHNLFPVLIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN 431
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + + S K E V+ + HEA YDAF+ G V + +HL
Sbjct: 432 PSKNSGPVIIHAS-KCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 475
>gi|85544056|pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
gi|85544057|pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
gi|85544060|pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
gi|85544061|pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
gi|85544062|pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
gi|85544063|pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 158/360 (43%), Gaps = 56/360 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGS-EV 122
+ E S + + P + ++ K D++ E + LL++ + + ++
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDL 202
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+P GF + L+ Q + K+ K + + E
Sbjct: 203 EPC---------------------TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYI 239
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
VI ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+
Sbjct: 240 VISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVM 294
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
H +F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 295 HTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDII 338
Query: 303 PQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 339 NNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398
>gi|307174505|gb|EFN64967.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Camponotus floridanus]
Length = 509
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/455 (24%), Positives = 204/455 (44%), Gaps = 81/455 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+ R + +F+ Q +++FL Y+FDFN + G+SYL+ ++D+A+
Sbjct: 87 NFFLLPRS---IPSKNRQFVWQVAALEFLTAYEFDFNKFAYNGISYLN--EDDQAILQ-- 139
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+++ + LF+ + + R +D L +++ + + S+
Sbjct: 140 --------------QQLEENVLFHNVERSMSYREEDSLKDYINQVFEWLNTASD------ 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
ET K+ + + +H+ L R F ++ SG N++ +
Sbjct: 180 ------ETNSLKIDTPTPILQYLTHKEL------RNRFPNV--WTFSG-----NNMVTVM 220
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
+ D + ++++ +E I + +++ IGF V LL + KK IV HN LD+ +Y +
Sbjct: 221 KIRPDSRAILEQ--EEGSILENVLLESYIGFSKVFKLLVTLKKPIVAHNALLDLMFMYQQ 278
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKIL---LNSNSILQQRMKKSSTS-LSKAFSVLCP 303
F+ PLP F S+++ FP I DTK L L + +Q+ K +S S L + F+
Sbjct: 279 FYKPLPKKYTNFKDSLHQLFPTIYDTKFLSFELREHLSTEQKWKFNSLSGLVEYFTEKQG 338
Query: 304 Q-IALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+ +ALGS P++ + +++ +S+ S H AG+D++ G VF +
Sbjct: 339 KYLALGS--------PNINLTCKINSDKSNVVPSTKYHTAGWDSYFAGYVFIRLIHVFSA 390
Query: 363 D-FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 421
+ Q S+ ++ H E L +V S+ N IN+ G+ + L + + PK L
Sbjct: 391 KCYGQSSTLKHFTHTE-LMNNVK----SFAN--CINIIRGSTSHLKLDGPEPGSTRPKWL 443
Query: 422 FECIVIVWGFP----------SHLKAWDIRECISK 446
F + + P S A DI++C SK
Sbjct: 444 F--VKTLASKPITAMQIAEKMSSFGAVDIKQCTSK 476
>gi|440902237|gb|ELR53050.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Bos grunniens mutus]
Length = 531
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 152/354 (42%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGVLDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNI 145
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T +W + + + + D ++ WL +EG
Sbjct: 146 LT------GNWKVRSSLDKDQI---------KVVIDEVTRWLDL----AEEGD------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+RK D+ LR Q VIV
Sbjct: 180 ---------------WMTLPGIAGFQAFEVQLVLRKALPDIWTVLR-------DQGVIVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSTQHRWYLETTSCDRESCWKEKILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP T +EF +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPETYDEFKLNIHNLFPVLIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + + S + E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 PTKNSGPVIIHAS-RCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|402907752|ref|XP_003916630.1| PREDICTED: poly(A)-specific ribonuclease PARN [Papio anubis]
Length = 621
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/471 (22%), Positives = 195/471 (41%), Gaps = 90/471 (19%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F VL
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKVLF- 338
Query: 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+ + + S + S HEAGYDA++TG F ++LG
Sbjct: 339 ----------------ICYFINAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-S 381
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
F A ++ + N L+L ++++ N L +++H
Sbjct: 382 FLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 428
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 429 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 473
>gi|157118661|ref|XP_001659202.1| poly(a)-specific ribonuclease (deadenylation nuclease) [Aedes
aegypti]
gi|108883264|gb|EAT47489.1| AAEL001426-PA [Aedes aegypti]
Length = 582
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 168/389 (43%), Gaps = 69/389 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+ + + G + F CQ SM FLA+ FDFN EG+SY ED+ +
Sbjct: 85 NFYCYPK------GRMHIFSCQGESMRFLAENGFDFNKLFREGLSYCGEADEDRLRTELK 138
Query: 68 STYEDESLDSWHSLKEIRDTHLFN-IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ + +E + N +P E++ +SE + L++ D+ +
Sbjct: 139 ERQDQRAAALEAKEEENGNNDSLNMVPVPPEEEKLMKEISERIEEFLKSEDKDYTI---- 194
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
+ NGF + L+ Q++ + K ++ V+ EN+ + ++V
Sbjct: 195 -----------------TNCNGF--QRKLVYQMIDSQFRKTVSTSSVTLENN-HKAILV- 233
Query: 187 IESESDKKMLMKEVKDEQKIDAE-MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
E + + +E+++ E ++ +G V+ LS +KLI+GHN LD+ I
Sbjct: 234 ---ERKRTKEQELKLEEERVAQENEDLERMVGLSLVLQELSRARKLIIGHNMLLDLLFII 290
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL---- 301
+FF PLP +EF V + FP I+DTK L + + ++ S+ L F +
Sbjct: 291 RQFFRPLPHCYQEFKKIVRELFPLILDTKYLCTNGEL---KVHVYSSVLGHVFEAVNKAP 347
Query: 302 --CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
P++ G + + DD++ +H+AGYDA++TG F S
Sbjct: 348 FNIPEVTCGFEEHKYS----------PDDMK--------QHDAGYDAYLTGLCFLGLASF 389
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYL 388
+D K +L + L+ ++N ++L
Sbjct: 390 FKVDLK------DLTRDPILKAYINRIFL 412
>gi|358413893|ref|XP_872807.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
Length = 502
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 152/354 (42%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 61 NFFLFPTTFGVLDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNI 116
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T +W + + + + D ++ WL +EG
Sbjct: 117 LT------GNWKVRSSLDKDQI---------KVVIDEVTRWLDL----AEEGD------- 150
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+RK D+ LR Q VIV
Sbjct: 151 ---------------WMTLPGIAGFQAFEVQLVLRKALPDIWTVLR-------DQGVIVK 188
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 189 KVSTQHRWYLETTSCDRESCWKEKILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHE 248
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + +EF +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 249 KFFRPLPESYDEFKLNIHNLFPVLIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN 306
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + + S + E V+ + HEA YDAF+ G V + +HL
Sbjct: 307 PTKNSGPVIIHAS-RCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 350
>gi|297478860|ref|XP_002690421.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
gi|296483863|tpg|DAA25978.1| TPA: poly(A)-specific ribonuclease (PARN)-like domain containing
1-like [Bos taurus]
Length = 524
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 152/354 (42%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 83 NFFLFPTTFGVLDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNI 138
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T +W + + + + D ++ WL +EG
Sbjct: 139 LT------GNWKVRSSLDKDQI---------KVVIDEVTRWLDL----AEEGD------- 172
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+RK D+ LR Q VIV
Sbjct: 173 ---------------WMTLPGIAGFQAFEVQLVLRKALPDIWTVLR-------DQGVIVK 210
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 211 KVSTQHRWYLETTSCDRESCWKEKILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHE 270
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + +EF +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 271 KFFRPLPESYDEFKLNIHNLFPVLIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN 328
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + + S + E V+ + HEA YDAF+ G V + +HL
Sbjct: 329 PTKNSGPVIIHAS-RCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 372
>gi|311243695|ref|XP_001926376.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Sus scrofa]
Length = 531
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 153/354 (43%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K ++
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIRHNIL 146
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ +W + + + + D ++ WL +EG
Sbjct: 147 T-------GNWRVRSSLDKDQI---------KVVIDEVTRWLDL----AEEGD------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+RK ++ LR Q VIV
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLRKALPNIWTVLR-------DQGVIVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLENTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + E+F +++ FP +IDTK + + + ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYEDFKLNIHNLFPILIDTKNV--TKDVWKELSFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + + S K E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 PTKDSGPVIIHAS-KCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|332245327|ref|XP_003271812.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Nomascus
leucogenys]
Length = 531
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R T PD + + D ++ WL L + D
Sbjct: 144 ----DILTGNW----RVRST-----PDKDQIKVVIDEVTRWLD-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ ++ L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRRYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F ++++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYDQFKQNIHRLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 -PTKTSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|332245325|ref|XP_003271811.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Nomascus
leucogenys]
Length = 520
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 79 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 132
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R T PD + + D ++ WL L + D
Sbjct: 133 ----DILTGNW----RVRST-----PDKDQIKVVIDEVTRWLD-LAKEGD---------- 168
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 169 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 206
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ ++ L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 207 KVSKQHRRYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 266
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F ++++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 267 KFFRPLPESYDQFKQNIHRLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 324
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 325 -PTKTSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|297292013|ref|XP_002808449.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Macaca
mulatta]
Length = 538
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 164/373 (43%), Gaps = 79/373 (21%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 97 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 150
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D+++ WL L + D
Sbjct: 151 ----DILTGNW----RVRSS-----PDKDQIKAVIDKVTRWLD-LAKEGD---------- 186
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ D+ L+ G V+V
Sbjct: 187 ---------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLKDEG-------VVVK 224
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 225 KVSKQHRWYLQNTSCDRESCWKEKILLSARGFSVXFQMLVKAQKPLVGHNMMMDLLHLHE 284
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL
Sbjct: 285 KFFRPLPESYDQFKQNIHSLFPVLIDTKNV--TKDIWKEMNFPRVSNLSEVYEVL----- 337
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHL-- 360
+ L P+ E+ + +S VK HEA YDAF+ G V + +HL
Sbjct: 338 ------NSDLNPTKNSGPEI--VHASRCEKYVKTKCPHEAAYDAFLCGSVLLKV-AHLLL 388
Query: 361 ----GIDFKQQSS 369
GID +SS
Sbjct: 389 QKIHGIDPVPESS 401
>gi|345784478|ref|XP_541182.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Canis lupus familiaris]
Length = 531
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 153/354 (43%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHNI 145
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T +W + + + + D ++ WL +EG
Sbjct: 146 LT------GNWRVRSSLDKDQI---------KVVIDEVTRWLDL----AEEGD------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ D+ LR Q +IV
Sbjct: 180 ---------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQGIIVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLENTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYDQFKLNIHNLFPILIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + + S K E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 PTKNSGPVVIHAS-KCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|290998593|ref|XP_002681865.1| poly(A)-specific ribonuclease [Naegleria gruberi]
gi|284095490|gb|EFC49121.1| poly(A)-specific ribonuclease [Naegleria gruberi]
Length = 707
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 167/390 (42%), Gaps = 68/390 (17%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF++F+ P A F CQ T + FL + D N I +G+SY++ ++E+ ++V
Sbjct: 200 YNFYVFKS---PTRSANV-FSCQNTCLQFLVNNKMDINKVIGQGISYMNEDEEEAIRENV 255
Query: 67 NSTYEDESLDSWHSLKEIRDTHL----FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
+ ++ + + K R + F E K R++EW + D+ +
Sbjct: 256 TRITKQKAASATNRRKSDRGDKIQVENLKPEQREFLENCKSRVAEWFDN---SEDDDINL 312
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
P ++ F +M ++ + +Q R SG
Sbjct: 313 DPCNTFERKLLFQEFGEMITLTTIYANNRTAFIRVQ-------------RASG------- 352
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKL-IVGHNCFLDI 241
ES+++ + +E+++ ++ IGF +I L K L +GHN LD+
Sbjct: 353 -------ESEEEKMQREIRE--------AVNRDIGFSRIIRELKKHKHLFFIGHNAMLDM 397
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
HI KF PLP ++E+F + V + F H+IDTK + + + + + TSL AF
Sbjct: 398 MHIVHKFIQPLPESSEQFKTIVRENFEHVIDTKYICETYPQISSALGR-DTSLRTAF--- 453
Query: 302 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK---HEAGYDAFMTGCVFAQACS 358
+ L + +T + + + + S +K H A +DAFMTG VF + S
Sbjct: 454 --EYTLNNNNTDGPVFENF-----------TEFYSSIKDFDHVAAFDAFMTGYVFYR-IS 499
Query: 359 HLGIDFKQQSSSENLAHNEKLREHVNLLYL 388
H+ + + + +A ++E N++ +
Sbjct: 500 HMIATNRNNKNFKGIADLTHIKEMTNIINI 529
>gi|426235017|ref|XP_004011487.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Ovis aries]
Length = 529
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 151/353 (42%), Gaps = 67/353 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGVLDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNI 145
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T +W + + + + D ++ WL +EG
Sbjct: 146 LT------GNWKVRSSLDKDQI---------KVVIDEVTRWLD----LAEEGD------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+RK ++ LR Q VIV
Sbjct: 180 ---------------WMTLPGIAGFQAFEVQLVLRKALPEIWTVLR-------DQGVIVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSTQHRWYLENTSCDRESCWKEKILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + +EF +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYDEFKLNIHNLFPVLIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
S + + S + E V+ + HEA YDAF+ G + CSH
Sbjct: 336 PTKNSGPVIIHAS-RCEKYVE--------TKYPHEAAYDAFLCG---SGECSH 376
>gi|320165859|gb|EFW42758.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 813
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 191 SDKKMLMKEVKDEQKIDAEMSIKA--------SIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
+++K +E + + ++ A+ IKA +IGFRHVID +S KKL+VGHN LD+A
Sbjct: 295 AEEKAQRQEARTQAQLAAQQEIKALADEMMHQAIGFRHVIDCISEHKKLVVGHNMLLDLA 354
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL- 301
H + KF G LP ++F + + FP++ DTK L S+S L R + ST+L+ L
Sbjct: 355 HTFDKFIGDLPEQLDDFKNQFAQVFPYVADTK-HLASSSELGGRFE--STALADLVRTLL 411
Query: 302 -----CP-QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF-- 353
P + L + LQP V + + HEAGYDA++TG F
Sbjct: 412 YESDSAPINVELPDEFNAYPLQP-----VSSSAAAAGAQPNERLHEAGYDAYITGLGFVA 466
Query: 354 -AQACSHLGIDFKQQSSSENLAHNEKL 379
A +HL SE +A N L
Sbjct: 467 LAHKLAHL--------RSERIAQNSAL 485
>gi|74141205|dbj|BAE35913.1| unnamed protein product [Mus musculus]
Length = 624
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/469 (23%), Positives = 196/469 (41%), Gaps = 75/469 (15%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQF- 146
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGS-EVQPSF 126
DE + + + IP+ ++ D++ E + L++ ++ S E+ P
Sbjct: 147 ----DEKRSQANGAGALAKCPV-TIPED--QKKFIDQVVEKIEDFLQSEEKRSLELDPC- 198
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
GF + L+ Q + K+ K + + + VI
Sbjct: 199 --------------------TGF--QRKLIYQTLSWKYPKGIHVETLETDKKERHIVISK 236
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 237 VDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIH 291
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
+F+ PLP EF FP ++DTK++ + ++ F + +
Sbjct: 292 QFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINNTS 335
Query: 307 LGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFK 365
L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 336 LAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLS 395
Query: 366 QQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECI 425
+ A ++ + N L+L ++++ N L +++H
Sbjct: 396 PPKMCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH--------- 439
Query: 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 440 VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|345329209|ref|XP_001509823.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ornithorhynchus
anatinus]
Length = 735
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 157/353 (44%), Gaps = 73/353 (20%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F LD + Q +S++FL +Y FD+N + GV YL+ EQE++ + +
Sbjct: 89 YNFFLFPTTFGILDS---QISFQASSIEFLNRYGFDYNKFLKNGVPYLNEEQEERIQQAL 145
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
S +W + + L + + ++ WL L ++ D
Sbjct: 146 LS-------GNWKVRRTVDRDQL---------KAVIGEVTRWLA-LAQDGDR-------- 180
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
++L G T Q+ IQLV+R+ D+ E +
Sbjct: 181 -----------------MTLRGVTGFQVFNIQLVLRQALPDVWTFPKDRE--------IV 215
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++ S + E + E + ++ GF + +L+ +K +VGHN +D+ ++
Sbjct: 216 VQKVSREHRWCLENSPQDPCRKESILLSARGFSVLFRMLAEARKPLVGHNMLMDLLFLHE 275
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF+ PLP + E+F +V+ FP ++DTK + +N+I ++ +++L A+ +L
Sbjct: 276 KFYRPLPESYEQFKQNVHGLFPVLVDTKNV--TNAIWKELNFPRASNLFDAYEIL----- 328
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-------HEAGYDAFMTGCV 352
S++++L + S E +R + G++ HEA YDAF+ G V
Sbjct: 329 --SRASYLPVVGS----SERSLLRVNRGAGGLQLVDSKYPHEAAYDAFLCGSV 375
>gi|380013456|ref|XP_003690772.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis florea]
Length = 515
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 38/272 (13%)
Query: 212 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 271
I+ ++G ++ ++ +KLIVGHN LD+ HI +FFG LP + EF S V+ FP I+
Sbjct: 248 IQQAVGLSILMRKIADSEKLIVGHNMLLDLCHIVHQFFGQLPESYLEFKSLVHSLFPRIL 307
Query: 272 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 331
DTKI+ +S Q+ K++ P LG ++ P EVE D RS
Sbjct: 308 DTKIICHS-----QQFKEN-----------IPSSNLGILLETVSKSPFKITEVEPTDGRS 351
Query: 332 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN-LLYLSW 390
+ S HEAGYDA++TG F ++LG ++ S L+ + L +N LL
Sbjct: 352 YSTLSEKCHEAGYDAYITGICFIALSNYLG-SLQKPEVSIVLSDSPLLNPFLNKLLIARL 410
Query: 391 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 450
+ INL + N ++H V FP K W + IS ++ P
Sbjct: 411 KDVPYINLVGDD-------PNPSRDH---------VFHLTFP---KEWKFND-ISHLFSP 450
Query: 451 TSVISVYHVDETAVFVQFSRAEMVSKFLDLKG 482
+ V + + + +++ R + V++ + + G
Sbjct: 451 FGSVHVSWLSDISAYIELHRRDQVNEVMKVLG 482
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F R PL+ A + F+CQT+S+ FLA FDFN G+ YL+ +E+K +K
Sbjct: 84 YNFYVFPR---PLNRTAPDCRFMCQTSSISFLASQGFDFNKLFKLGIPYLTVNEEEKLMK 140
Query: 65 HV 66
+
Sbjct: 141 RL 142
>gi|402868642|ref|XP_003898404.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Papio anubis]
Length = 531
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 177/409 (43%), Gaps = 81/409 (19%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D+++ WL L + D
Sbjct: 144 ----DILTGNW----RVRSS-----PDKDQIKAVIDKVTRWLD-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ D+ L+ G V+V
Sbjct: 180 ---------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLKDEG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLQNTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL
Sbjct: 278 KFFRPLPESYDQFKQNIHSLFPVLIDTKNV--TKDIWKEMNFPRVSNLSEVYEVL----- 330
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHL-- 360
+ L P+ E+ + +S VK HEA YDAF+ G V + +HL
Sbjct: 331 ------NSDLNPTKNSGPEI--VHASRCEKYVKTKCPHEAAYDAFLCGSVLLKV-AHLLL 381
Query: 361 ----GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTS 405
GID +SS + + L +VN + L IN S + S
Sbjct: 382 QKIHGIDPVPESSFPQ--YLDVLAPYVNQVNLIRAGVPKINFSGPDYPS 428
>gi|326915669|ref|XP_003204136.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Meleagris gallopavo]
Length = 514
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 187/437 (42%), Gaps = 84/437 (19%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F +D E +S+ FL+ Y FD+N + +G+ Y++ QE K +
Sbjct: 59 YNFFLFPSTLGVMDA---ELTLSASSIQFLSHYGFDYNKFLKDGIPYMNELQE----KIL 111
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ + S + +L ++ ++ D ++ W+ EG
Sbjct: 112 SQRLLEGSWKVYSAL------------NMNVVKKAIDEVTCWIAA----AKEGD------ 149
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
A+ L + Q+L +QLV+R+ A V + V+V
Sbjct: 150 ----------------AMILQELSDSQMLDVQLVLRQ-----ALPNVWTQPLRDNEVLVK 188
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S +++L D + E+ + ++ GF ++ ++ KK +VGHN +D+ H++
Sbjct: 189 KVSPQHRRLLESSSHDSCR--KELILTSARGFTNLFQIIVKAKKPLVGHNMLMDLCHLHD 246
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKS------STSLSKAFSV 300
KF+ PLP + EEF +++ FP +IDTK + + SI + ++ + S K ++
Sbjct: 247 KFYNPLPESYEEFKKNIHHLFPVLIDTKTV--TKSIWKPQVTREQVCNFVSNITRKDKNL 304
Query: 301 LCPQIALGSKSTHLALQPSVKV-EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
CP + S + PS V ++ D +R + HEA YDAF+ G V ++ +H
Sbjct: 305 TCPFVF---SSDLNPMDPSCPVIDLASDSVRYA--GKAAPHEAAYDAFLCGSVLLKS-AH 358
Query: 360 LGI----DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKN 415
L + D ++ S + L E++N +N G +S + +
Sbjct: 359 LLLCRLTDDAAKADSSFSQYLTMLAEYLN----------KVNFIRGGVSSINFSGEDASC 408
Query: 416 HYPKILFECIVIVWGFP 432
YP L +V V G+P
Sbjct: 409 RYPPPL---VVCVRGWP 422
>gi|355562180|gb|EHH18812.1| hypothetical protein EGK_15481, partial [Macaca mulatta]
gi|355749010|gb|EHH53493.1| hypothetical protein EGM_14142, partial [Macaca fascicularis]
Length = 530
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 164/373 (43%), Gaps = 79/373 (21%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D+++ WL L + D
Sbjct: 144 ----DILTGNW----RVRSS-----PDKDQIKAVIDKVTRWLD-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ D+ L+ G V+V
Sbjct: 180 ---------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLKDEG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLQNTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL
Sbjct: 278 KFFRPLPESYDQFKQNIHSLFPVLIDTKNV--TKDIWKEMNFPRVSNLSEVYEVL----- 330
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHL-- 360
+ L P+ E+ + +S VK HEA YDAF+ G V + +HL
Sbjct: 331 ------NSDLNPTKNSGPEI--VHASRCEKYVKTKCPHEAAYDAFLCGSVLLKV-AHLLL 381
Query: 361 ----GIDFKQQSS 369
GID +SS
Sbjct: 382 QKIHGIDPVPESS 394
>gi|225698027|pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
gi|225698028|pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/469 (23%), Positives = 196/469 (41%), Gaps = 75/469 (15%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 91 NFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQF- 148
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGS-EVQPSF 126
DE + + + IP+ ++ D++ E + L++ ++ S E+ P
Sbjct: 149 ----DEKRSQANGAGALAKCPV-TIPED--QKKFIDQVIEKIEDFLQSEEKRSLELDPC- 200
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
GF + L+ Q + K+ K + + + VI
Sbjct: 201 --------------------TGF--QRKLIYQTLSWKYPKGIHVETLETDKKERHIVISK 238
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 239 VDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIH 293
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
+F+ PLP EF FP ++DTK++ + ++ F + +
Sbjct: 294 QFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINNTS 337
Query: 307 LGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFK 365
L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 338 LAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLS 397
Query: 366 QQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECI 425
+ A ++ + N L+L ++++ N L +++H
Sbjct: 398 PPKMCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH--------- 441
Query: 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 442 VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 486
>gi|449497560|ref|XP_002188970.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Taeniopygia guttata]
Length = 496
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 143/306 (46%), Gaps = 69/306 (22%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F L EF +S+ FL+ Y FD+N + +G+ Y++ QE+ +H+
Sbjct: 103 YNFFLFPST---LGIRDVEFTVSASSIQFLSHYGFDYNKFLKDGIPYMNEVQEEILRQHL 159
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ D+W D D+L ++ D ++ W+ + ++E + +
Sbjct: 160 LA-------DTWKVCSTNVDR------DVL--KKAIDEVTSWI---VAAKEEDTMILQDL 201
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
N + + G+ ++ +QLV+R+ ++ V+
Sbjct: 202 N----------------VVVYGY---HMIEVQLVLRQALEN-----------------VW 225
Query: 187 IESESDKKMLMKEVKDEQK----------IDAEMSIKASIGFRHVIDLLSSEKKLIVGHN 236
E D K+++K+V E + ++ + ++ GF ++ +L KK +VGHN
Sbjct: 226 TEPLEDNKVMVKKVSPEHRQLLENSSDDHCQKKLILLSARGFTNLFQILVKVKKPLVGHN 285
Query: 237 CFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSK 296
+D+ H++ KF+ PLP + EEF +++ FP IIDTK + + S+ ++ + +SL +
Sbjct: 286 MLMDLMHLHDKFYRPLPESYEEFKRNIHNLFPVIIDTKTV--TKSVQKKFLFPRVSSLME 343
Query: 297 AFSVLC 302
++VLC
Sbjct: 344 VYAVLC 349
>gi|440804573|gb|ELR25450.1| RNA binding domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 631
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 54/288 (18%)
Query: 191 SDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFG 250
SD++ K + Q+ DAE+ +A++GFR VID+L+ KK +VGHN LD+ H S F
Sbjct: 229 SDEERSAKRQEKAQQGDAEL--EAAVGFRRVIDVLTEAKKPVVGHNLLLDLVHTLS-FLQ 285
Query: 251 PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK 310
P T+++F S ++ FP I+DTK +++S+ L + C ALG
Sbjct: 286 LPPPTSDQFKSQLHSLFPTIVDTKFVVSSSPELVSQ---------------CASTALG-- 328
Query: 311 STHLALQPSVKVEVEVDDIRSSNWNSGVK---------HEAGYDAFMTGCVFAQACSHLG 361
TH A D + ++ +G HEAG+DA +TG + + HL
Sbjct: 329 DTHAAFD-----GPRFQDRPAISFPAGFGAYAEDKSRFHEAGFDALITGVAYLRMAYHLA 383
Query: 362 IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 421
+ + S+ + L + E+ N L+L ++ NL+ + T +
Sbjct: 384 -EARTGSADDLLPTGPLMEEYRNKLFLLRSDIPYYNLAGPDPTPDRAG------------ 430
Query: 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFS 469
+ V F L+ D I + +G + V VD+T++F+ S
Sbjct: 431 ---VFYVHNFSPSLRTGD----IVRHFGSFGRVFVNWVDDTSLFITLS 471
>gi|301779938|ref|XP_002925390.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 526
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 152/354 (42%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 85 NFFLFPTTFGILDS---EFTFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHNI 140
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T +W + + + + D ++ WL + +EG
Sbjct: 141 LT------GNWRVRSSLDKDQI---------KVVIDEVTRWLD----SAEEGD------- 174
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ D+ LR Q +IV
Sbjct: 175 ---------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQGIIVK 212
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++ + L D E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 213 KVNKQHRWYLENTSCDRASCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 272
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 273 KFFRPLPESYDQFKLNIHNLFPVLIDTKNV--TRDIWKELNFPRVSNLSEVYEVLNSDLN 330
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + S K E V+ + HEA YDAF+ G V + +HL
Sbjct: 331 PTKNSGPEVIHAS-KCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 374
>gi|148664946|gb|EDK97362.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Mus musculus]
Length = 563
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 196/471 (41%), Gaps = 79/471 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E E++ L+
Sbjct: 28 NFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQE-EERQLR--- 82
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGS-EVQP 124
E D S L P + ++ K D++ E + L++ ++ S E+ P
Sbjct: 83 -----EQFDEKRSQANGAGA-LAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDP 136
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
GF + L+ Q + K+ K + + + VI
Sbjct: 137 C---------------------TGF--QRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 173
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 174 SKVDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHT 228
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 229 IHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINN 272
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 273 TSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSL 332
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
+ A ++ + N L+L ++++ N L +++H
Sbjct: 333 LSPPKMCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 378
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 379 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 423
>gi|60390578|sp|Q8VDG3.1|PARN_MOUSE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|18256918|gb|AAH21899.1| Parn protein [Mus musculus]
Length = 624
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 196/471 (41%), Gaps = 79/471 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E E++ L+
Sbjct: 89 NFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQE-EERQLR--- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGS-EVQP 124
E D S L P + ++ K D++ E + L++ ++ S E+ P
Sbjct: 144 -----EQFDEKRSQANGAGA-LAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDP 197
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
GF + L+ Q + K+ K + + + VI
Sbjct: 198 ---------------------CTGF--QRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 234
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 235 SKVDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHT 289
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 290 IHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINN 333
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 334 TSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSL 393
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
+ A ++ + N L+L ++++ N L +++H
Sbjct: 394 LSPPKMCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 439
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 440 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|281348205|gb|EFB23789.1| hypothetical protein PANDA_014878 [Ailuropoda melanoleuca]
Length = 429
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 152/354 (42%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 8 NFFLFPTTFGILDS---EFTFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHNI 63
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T +W + + + + D ++ WL + +EG
Sbjct: 64 LT------GNWRVRSSLDKDQI---------KVVIDEVTRWLD----SAEEGD------- 97
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ D+ LR Q +IV
Sbjct: 98 ---------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQGIIVK 135
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
++ + L D E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 136 KVNKQHRWYLENTSCDRASCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 195
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 196 KFFRPLPESYDQFKLNIHNLFPVLIDTKNV--TRDIWKELNFPRVSNLSEVYEVLNSDLN 253
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + S K E V+ + HEA YDAF+ G V + +HL
Sbjct: 254 PTKNSGPEVIHAS-KCEKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 297
>gi|380022861|ref|XP_003695254.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Apis florea]
Length = 633
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 167/370 (45%), Gaps = 96/370 (25%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
N ++F + +PL + Q +++FL K+ F+FN ++EG+S+L E ++K LK+
Sbjct: 88 NSYLFPKS-IPLKNR--HLIWQVAALEFLCKHNFEFNKFLNEGISFLD-ETDEKLLKNY- 142
Query: 68 STYEDESLDSWHSLKEIRDTHL-FNIPDILFAER-----MKDRLSEWLGGLLRNRDEGSE 121
I+ L +N+ + + E K ++SEW+
Sbjct: 143 ----------------IKGGSLAYNLNHLTYEEENEFIDYKTKISEWIAN---------- 176
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLL--LIQLVVRKHFKDLAYLRVSGENSC 179
N S+Q +LN TS+ +L LI +R ++K++ +S S
Sbjct: 177 -----NKSEQ-------------TLNIQTSNPILQYLIHKDIRYNYKNI--WSISDHKS- 215
Query: 180 SQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFL 239
I +E D L+K+ DE+ ++ E+ + IGF V LLSS KK+I+GHN L
Sbjct: 216 ----IGIVEISPDMHELLKK-NDEENLEKEL-LDYYIGFSKVFKLLSSSKKIIIGHNILL 269
Query: 240 DIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL------LNSNSILQQRMKKSS-- 291
D+ ++ +F+ PLP + EF +++++ FP I DTK L L S + ++ S
Sbjct: 270 DLMFMHQQFYKPLPNSYNEFKNNIHELFPQIYDTKFLSYEVRKLFSKEEVSWKISSLSTL 329
Query: 292 ----TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAF 347
T+ K ++ P+I + +S+++ L + H AG+DA+
Sbjct: 330 YEYFTTKGKLLTLNSPKIVINEESSNIIL------------------DEKKYHTAGWDAY 371
Query: 348 MTGCVFAQAC 357
G ++ +
Sbjct: 372 FAGYIYIKMA 381
>gi|291397222|ref|XP_002715010.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 531
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 66/379 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + +G+ Y++ EQE K +++
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKKGIPYMNEEQEKKIKQNIL 146
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ W + + + + D ++ WL +EG
Sbjct: 147 A-------GDWRVRSSLDKDQI---------KVVIDEVTRWLDP----AEEGD------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
+I+L G Q +QLV+R+ ++ + Q V+V
Sbjct: 180 ---------------SITLPGIAGFQAFEVQLVLRQALPNIWTAQRE------QGVVVKK 218
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
S + L D E + ++ GF +L +K +VGHN +D+ H++ K
Sbjct: 219 VSRQHRWYLEHTSCDRASCWKEKILLSARGFSVFFQMLVRAQKPLVGHNMMMDLLHLHEK 278
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
FF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 279 FFRPLPESYDQFKQNIHSLFPVLIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSNLN- 335
Query: 308 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQ 367
+K++ + + K E VD + HEA YDAF+ G V + +HL + Q+
Sbjct: 336 PTKNSGPEIIHANKCEKYVD--------TKCPHEAAYDAFLCGSVLLKV-AHLLL---QR 383
Query: 368 SSSENLAHNEKLREHVNLL 386
+ S + A +++++L
Sbjct: 384 AHSNSPATEPSFPQYLDML 402
>gi|89273974|emb|CAJ81781.1| Novel protein similar to poly(A)-specific ribonuclease
(deadenylation nuclease) [Xenopus (Silurana) tropicalis]
Length = 424
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 127/294 (43%), Gaps = 44/294 (14%)
Query: 183 VIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN LDI
Sbjct: 31 VISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLDI 84
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H +FF LP EF N FP ++DTK++ ++N F +
Sbjct: 85 MHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKEI 128
Query: 302 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+L L P +V+ + S N S HEAGYDA++TG F ++L
Sbjct: 129 IYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLHEAGYDAYITGLCFISMANYL 188
Query: 361 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 420
G F + ++ +R N L+L I+++ N L KR N
Sbjct: 189 G-SFLSPPKGYVSSRSKIIRPFFNKLFLM----RIMDIPYLNLEGPDLQP-KRDN----- 237
Query: 421 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S + V
Sbjct: 238 -----VLHVAFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSHPDQV 282
>gi|197102228|ref|NP_001126488.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Pongo abelii]
gi|75070545|sp|Q5R6R6.1|PNDC1_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|55731677|emb|CAH92544.1| hypothetical protein [Pongo abelii]
Length = 520
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 79 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 132
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D ++ WL L + D
Sbjct: 133 ----DILTGNW----RVRSS-----PDKDQIKVVIDEVTRWLD-LAKEGD---------- 168
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 169 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 206
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 207 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHE 266
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LSK + VL +
Sbjct: 267 KFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSKVYEVLNSDLN 324
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 325 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|21311877|ref|NP_083037.1| poly(A)-specific ribonuclease PARN [Mus musculus]
gi|12835834|dbj|BAB23382.1| unnamed protein product [Mus musculus]
gi|26337129|dbj|BAC32249.1| unnamed protein product [Mus musculus]
Length = 624
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 196/471 (41%), Gaps = 79/471 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E E++ L+
Sbjct: 89 NFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQE-EERQLR--- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGS-EVQP 124
E D S L P + ++ K D++ E + L++ ++ S E+ P
Sbjct: 144 -----EQFDEKRSQANGAGA-LAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDP 197
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
GF + L+ Q + K+ K + + + VI
Sbjct: 198 C---------------------TGF--QRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 234
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 235 SKVDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHT 289
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 290 IHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINN 333
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 334 TSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSL 393
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
+ A ++ + N L+L ++++ N L +++H
Sbjct: 394 LSPPKMCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 439
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 440 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|148664948|gb|EDK97364.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_c [Mus musculus]
Length = 672
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 196/471 (41%), Gaps = 79/471 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E E++ L+
Sbjct: 137 NFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQE-EERQLR--- 191
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGS-EVQP 124
E D S L P + ++ K D++ E + L++ ++ S E+ P
Sbjct: 192 -----EQFDEKRSQANGAGA-LAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDP 245
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
GF + L+ Q + K+ K + + + VI
Sbjct: 246 C---------------------TGF--QRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 282
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 283 SKVDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHT 337
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 338 IHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINN 381
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 382 TSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSL 441
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
+ A ++ + N L+L ++++ N L +++H
Sbjct: 442 LSPPKMCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 487
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 488 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 532
>gi|354481849|ref|XP_003503113.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cricetulus griseus]
Length = 577
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 173/412 (41%), Gaps = 87/412 (21%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-------- 138
Query: 68 STYEDESLDSWHSLKEIRDTHL---FNIPDILFAERMK---DRLSEWLGGLLRNRDEGSE 121
K+IR++ L + + L +++K D+++ WL +EG
Sbjct: 139 --------------KKIRESILRGNWRVRSSLDKDQIKVVIDKVTRWLDL----AEEGDR 180
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCS 180
++L G Q +Q+V+R+ ++ L+ G
Sbjct: 181 ----------------------MTLPGIAGFQAYEVQMVLRQALPNIWTVLKDEG----- 213
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VIV S+ + L D+ + E + ++ GF +L +K ++GHN +D
Sbjct: 214 --VIVKKVSQPHRWYLENASCDQIRCWREEIVLSARGFSVFFKMLVRAQKPLIGHNMMMD 271
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H++ KF+ PLP + +EF +++ FP IIDTK + + I ++ ++LS+ + V
Sbjct: 272 LLHLHEKFYKPLPESYDEFKQNIHNLFPVIIDTKNV--TKDIWKEMRFPRVSNLSEVYDV 329
Query: 301 LC----PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356
L P + G + H + E E + HEAGYDAF+ G V +
Sbjct: 330 LSSDLNPTNSTGPEIIHAS-------ECE------KYAETKCPHEAGYDAFLCGSVLLKV 376
Query: 357 CSHLGIDFKQQSSSENLAHNEK---LREHVNLLYLSWTNGEIINLSTGNRTS 405
L S + L ++ L +VN + L INLS + S
Sbjct: 377 AHLLLERVHDAGSVDELTFSQYLDVLEPYVNQVNLIRAGVPKINLSGPDYPS 428
>gi|328767409|gb|EGF77459.1| hypothetical protein BATDEDRAFT_36029 [Batrachochytrium
dendrobatidis JAM81]
Length = 581
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 174/401 (43%), Gaps = 83/401 (20%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQE---DKALK 64
NF I+ R G F Q +S++FL FDFN I EG+ ++S +E K L+
Sbjct: 87 NFNIYPRTGNKFFGLDRTFCVQISSLEFLEGNGFDFNKWIREGIPFVSITEEAAIRKKLE 146
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
+N T D +D ++ E +KD + L DE +
Sbjct: 147 TIN-TESDIVIDEKNT------------------EYVKDFIESVQKWLCETTDESYSIST 187
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
S N F H+ L+ Q ++K F +VS E++
Sbjct: 188 S---------------------NSF--HKRLIHQ-EIKKQFPG----QVSTEST------ 213
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKAS-----IGFRHVIDLLSSEKKLIVGHNCFL 239
+S + K L KD ++ ++ + +GFR VID++ + +K IVGHN L
Sbjct: 214 ---KSGVNLKRLQANQKDSSHTESRQALLKAELDLLVGFRKVIDIMVAAQKPIVGHNMSL 270
Query: 240 DIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 299
D+ HI +F PLP T EE+ VN+ FP + DTK + SN LQ + +T+L +
Sbjct: 271 DLFHIIHRFIQPLPDTWEEYKDIVNRNFPSVFDTKFMAISNKNLQTAI--INTTLGNLYD 328
Query: 300 VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ + + S LA+ + +D+R H+AG+DA+++G F +
Sbjct: 329 SILKE-PFDAPSIKLAM----GFDSYANDVRE-------LHKAGFDAYISGVSFLKM--- 373
Query: 360 LG-IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLS 399
LG +D S+S + + L N LY+ +++ +NLS
Sbjct: 374 LGLVDSLPVSTSIDWTSDFSLHCK-NKLYIMYSDIPFLNLS 413
>gi|328785451|ref|XP_623432.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Apis mellifera]
Length = 535
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 165/368 (44%), Gaps = 90/368 (24%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +PL + Q +++FL K+ F+FN + EG+S+L E ++K LK+
Sbjct: 88 NFYLFPKS-IPLKNR--HLIWQVAALEFLCKHNFEFNKFLKEGISFLD-ETDEKLLKNY- 142
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAER-----MKDRLSEWLGGLLRNRDEGSEV 122
+KE D+ +N+ + + E K ++SEW+
Sbjct: 143 -------------IKE--DSLAYNLNHLTYEEENEFINYKTKISEWIAN----------- 176
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLL--LIQLVVRKHFKDLAYLRVSGENSC- 179
+ +L TS+ +L LI +R ++K++ +S + S
Sbjct: 177 ------------------KSGETLKVETSNPILQYLIHKDIRHNYKNV--WSISDDKSVN 216
Query: 180 ----SQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGH 235
S N+ +I E+DK+ L KE+ D IGF V LL+S KK+IVGH
Sbjct: 217 IIEISPNMHEFIR-ENDKETLEKELLD-----------YYIGFSIVFKLLASSKKIIVGH 264
Query: 236 NCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL------LNSNSILQQRMKK 289
N LD+ ++ +F+ PLP + EF ++++ FP I DTK L L S + ++
Sbjct: 265 NILLDLMFMHQQFYKPLPNSYNEFKKNIHELFPQIYDTKFLSYEVRKLFSKEEVSWKISS 324
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMT 349
ST L + F+ + L S + + S ++ +D+ + H AG+DA+
Sbjct: 325 LST-LYEYFTTKGKLLTLNSPKIAMNNEESSNSDIILDEKKY--------HTAGWDAYFA 375
Query: 350 GCVFAQAC 357
G ++ +
Sbjct: 376 GYIYIKMA 383
>gi|384245538|gb|EIE19031.1| CAF1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 600
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 145/358 (40%), Gaps = 60/358 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LP G FLCQ S++FLA FDFN ++EG+ ++ D+ L +
Sbjct: 54 NFYLFPLPMLP--GQDKRFLCQAGSLEFLAGQGFDFNKFVYEGIPFMRVADRDRRLAGL- 110
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
S + S I T D+ F + ++S WL G R ++ E +
Sbjct: 111 ------SREPCRSEISIHKTE-----DVEFVSSLVQQVSSWLKG--REKELMLEEVNGYQ 157
Query: 128 DS--KQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIV 185
+ QQ E F A GF +F+ A + ++
Sbjct: 158 RAIQYQQLEKPQFG---AAQPPGF--------------YFESAAGPQGRRAIRLTRTTAA 200
Query: 186 YIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
+E+ + +K KE + E+ ++A+ GF V++ L K VGHNC D+
Sbjct: 201 EVEAFNLRK---KEAEFEK-------VRAAAGFCAVLERLRDSGKPAVGHNCAFDLTFTL 250
Query: 246 SKFFGPLPLTAEEFISSVNKYFP-HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
PLP F V +FP + DTK L+ L Q + STSL + L P
Sbjct: 251 EHLAQPLPPDWTAFKRLVQSWFPGGLWDTKYLVKQLPGLFQALP--STSLQPLYQALNPG 308
Query: 305 IA--------LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
L S L PSV+ + +S HEAGYDAFMTG VFA
Sbjct: 309 GTPQPEVLEYLNSTGDRL---PSVEHAAAFARYTGPDADSHA-HEAGYDAFMTGAVFA 362
>gi|431910469|gb|ELK13541.1| Poly(A)-specific ribonuclease PARN [Pteropus alecto]
Length = 635
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/501 (21%), Positives = 210/501 (41%), Gaps = 90/501 (17%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 164 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE----RQ 216
Query: 66 VNSTYEDESLDS--WHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSE 121
+ Y+++ L S +L + + P + ++ K D++ E + LL++ + +
Sbjct: 217 LREQYDEKRLQSNGAGALSYV-SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLKSEENKN- 274
Query: 122 VQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCS 180
+ L+ T Q LI Q + K+ K + + E
Sbjct: 275 ----------------------LDLDPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKER 312
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V+ ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD
Sbjct: 313 YIVVSKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLD 367
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFP--HIIDTKILLN-------------------- 278
+ H +F+ PLP + +++V P + + K+++
Sbjct: 368 VMHTVHQFYCPLPAKSNTAVNTVALSLPLSYFCNLKVVIAFHDNCITVWDSKGFILDLNE 427
Query: 279 ----SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 333
+ + + + + ++ F + +L L P +VE +D S +
Sbjct: 428 FKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFTPPKVESAEDFPSYD 487
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 393
S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 488 TASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM---- 542
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 543 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 587
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
I + +D+T+ FV S+ + V
Sbjct: 588 IQISWIDDTSAFVSLSQPDQV 608
>gi|444722573|gb|ELW63261.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Tupaia chinensis]
Length = 721
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 155/354 (43%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGVLDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IKHNL 145
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
T SW + + + + D ++ WL D+ E
Sbjct: 146 LT------GSWKVRSSLDKDQI---------KAVIDEVTRWL-------DQAEEGD---- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G VIV
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLRQALPNVWTVLKDRG-------VIVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLENTSCDRESCWKERILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + + ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYDQFKQNIHHLFPVLIDTKNV--TKDVWKELNFPRVSNLSEVYEVLSSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + S K E V + HEA YDAF+ G V + +HL
Sbjct: 336 -PTKNSGPVIVHSSKCEKYV--------ATKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|307105317|gb|EFN53567.1| hypothetical protein CHLNCDRAFT_136728 [Chlorella variabilis]
Length = 557
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 52/354 (14%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R P +G F+CQ +S+DFLA FDFN I++G+ Y+ D L V
Sbjct: 53 YNFHLFPR---PSEGIDKRFVCQASSIDFLASCGFDFNKSIYDGIGYMPVALRDARLASV 109
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ +E + + D+ F + ++EWL G
Sbjct: 110 D-----------RPPRERSEVLVRKAEDVAFVKDTVASVAEWLQG--------------- 143
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFK---DLAYLRVSGENSCSQNV 183
+ E + PA++ + +LL Q + R F + RV+ E +
Sbjct: 144 ----EDLELVL----PAVN----SYQRLLQYQELRRPQFGVADPPGFYRVAAEEGNGFQL 191
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+ + + + E + +++++A I + GF V++ + K VGHN D+++
Sbjct: 192 RLTRAAPGEAEAWEAEQR-QKRVEA---IHTAAGFAAVMEAMRDSGKPAVGHNLAFDLSY 247
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFP-HIIDTKILLNSNS--ILQQRMKKSSTSLSKAFSV 300
+ LP + E+ V ++FP + DTK L + + L +++ + + ++
Sbjct: 248 SLHSYAQELPGSWAEYKQLVGRWFPGGVYDTKFLSTAATGFPLFCHLEEQVEAFLQEAAL 307
Query: 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
+ GS A P V+ + + + HEAGYDA+MTG FA
Sbjct: 308 RSVAASGGSSDGEAAELPLVEHAAGFERYKGAA-TEAFAHEAGYDAYMTGAAFA 360
>gi|398404580|ref|XP_003853756.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
gi|339473639|gb|EGP88732.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
Length = 677
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 158/411 (38%), Gaps = 102/411 (24%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F Q+ + +FL K FD GV YLSR E K + D + ++K
Sbjct: 151 FSYQSGAAEFLLKVGFDMGRPFTHGVPYLSR-AESKTAREKFVKRNDRGAVADIAIKPT- 208
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP----SFNDSKQQFETIFFKMR 141
+ + F R++ ++ EW+ E + P + ++ ++Q E F+ R
Sbjct: 209 -----EVESLAFLARVRSQVDEWVASTSMKTPEYLNIVPFDSDNVSNEQKQEELSRFEKR 263
Query: 142 PAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVK 201
L+ +VR + +L + G VI + + D+ +
Sbjct: 264 --------------LVHQIVRAEYPELTTISRRG----MIQVIKFDQEREDR------IA 299
Query: 202 DEQKIDAEMSIKASIGFRHVID-------------------------------------- 223
+ +K D E I GFR +ID
Sbjct: 300 EGRKRDLEERIARQKGFRWIIDAMHGGNITSLDLRECARDSVTGEYIFVNMDDMKGQFHR 359
Query: 224 ---LLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 280
LL + K++VGHNCFLD+ +IY F G LP T EEF ++K +P I+DTK + N
Sbjct: 360 AQALLRNNPKVLVGHNCFLDLVYIYRTFIGTLPDTVEEFQRKLHKLWPVIVDTKYMSTHN 419
Query: 281 SILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV--KVEVEVDDIRSSNWNSGV 338
C I+ S +A Q S VEVD S +
Sbjct: 420 ---------------------CGDISPASSLEQIAEQLSAFQTPGVEVDPQHSKYTDLAA 458
Query: 339 KHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 389
HEAGYD+F+T V + + L ++ + ++ AH +L++ + + L+
Sbjct: 459 FHEAGYDSFLTAQVAVRLSAKLE---REGAYVDDDAHGAELKDGMAAVKLT 506
>gi|297679544|ref|XP_002817589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Pongo abelii]
Length = 532
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 75/363 (20%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 83 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 136
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D ++ WL L + D
Sbjct: 137 ----DILTGNW----RVRSS-----PDKDQIKVVIDEVTRWLD-LAKEGD---------- 172
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 173 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 210
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 211 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHE 270
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTK-----ILLNSNSILQQRMKKSSTSLSKAFSVL 301
KFF PLP + ++F +++ FP +IDTK I N I +R+ ++ L + ++
Sbjct: 271 KFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDIWKVMNRIALRRVSRTMGRLYEPQPLV 330
Query: 302 CPQIALG----SKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 357
++ G + L L + VE + HEA YDAF+ G V +
Sbjct: 331 DGELGWGVFLMTAQFSLLLVENASVETK------------CPHEAAYDAFLCGSVLLKV- 377
Query: 358 SHL 360
+HL
Sbjct: 378 AHL 380
>gi|21751916|dbj|BAC04070.1| unnamed protein product [Homo sapiens]
gi|119567997|gb|EAW47612.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_a [Homo sapiens]
Length = 531
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D ++ WL L + D
Sbjct: 144 ----DILTGNW----RVRSS-----PDKDQIKVVIDEVTRWLE-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|27735155|ref|NP_775787.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Homo sapiens]
gi|160419239|sp|Q8NA58.2|PNDC1_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|21757367|dbj|BAC05101.1| unnamed protein product [Homo sapiens]
gi|85567674|gb|AAI12247.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Homo
sapiens]
gi|119567998|gb|EAW47613.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_b [Homo sapiens]
gi|313883454|gb|ADR83213.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
(PNLDC1) [synthetic construct]
Length = 520
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 79 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 132
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D ++ WL L + D
Sbjct: 133 ----DILTGNW----RVRSS-----PDKDQIKVVIDEVTRWLE-LAKEGD---------- 168
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 169 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 206
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 207 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 266
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 267 KFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 324
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 325 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|114610057|ref|XP_001151114.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 3 [Pan troglodytes]
gi|397471750|ref|XP_003807445.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Pan paniscus]
Length = 531
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D+++ WL L + D
Sbjct: 144 ----DILTGNW----RVRSS-----PDKDQIKVVIDQVTRWLE-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + +F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYNQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|343962531|dbj|BAK62853.1| poly(A)-specific ribonuclease [Pan troglodytes]
Length = 531
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D+++ WL L + D
Sbjct: 144 ----DILTGNW----RVRSS-----PDKDQIKVVIDQVTRWLE-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + +F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 278 KFFRPLPESYNQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|145495491|ref|XP_001433738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400858|emb|CAK66341.1| unnamed protein product [Paramecium tetraurelia]
Length = 526
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 19/159 (11%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
G R ++D +S +K I+ HN +DI HIY KFF LP + EFIS VN FP I DTK L
Sbjct: 254 GVRILLDQISQQKTPIILHNGLMDIMHIYDKFFETLPDSRGEFISKVNSLFPVIYDTKFL 313
Query: 277 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ---PSVKVEVEVDDIRSSN 333
+N + + ++ + FS L K++++ LQ P+V E + +
Sbjct: 314 INQSYSVYNKVGQ--------FSEL--------KNSYINLQNLEPNVVFGDECQEYNNLE 357
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSEN 372
N +HEAG+D++M G VF +A + +D K+ +N
Sbjct: 358 ENQAFEHEAGFDSYMAGSVFYKAKKLMNLDQKKLDLYQN 396
>gi|114610059|ref|XP_518838.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 4 [Pan troglodytes]
gi|397471748|ref|XP_003807444.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Pan paniscus]
gi|410307434|gb|JAA32317.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Pan
troglodytes]
Length = 520
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 79 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 132
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D+++ WL L + D
Sbjct: 133 ----DILTGNW----RVRSS-----PDKDQIKVVIDQVTRWLE-LAKEGD---------- 168
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 169 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 206
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 207 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 266
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + +F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 267 KFFRPLPESYNQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 324
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 325 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|452984862|gb|EME84619.1| hypothetical protein MYCFIDRAFT_152853 [Pseudocercospora fijiensis
CIRAD86]
Length = 574
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 149/381 (39%), Gaps = 101/381 (26%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F Q+ + +FL FD N +GV YLSR + +A +YE + E++
Sbjct: 104 FSFQSGAGEFLMGVGFDMNKPFRDGVPYLSRSEARQA----RESYEKRQKRGNIADIEVK 159
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 145
T + F +R++ + W+ DSK + + PA S
Sbjct: 160 PTE---TETLAFMDRVRKEVQAWV------------------DSKNVATHDYLNIAPAGS 198
Query: 146 ---LNGFTSHQL-----LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLM 197
+NG +S ++ L+ +VR F +L G + Q IV + E + ++ +
Sbjct: 199 DVLVNGESSAEMPRLEKRLVHQLVRAEFPELVTF---GRRNFVQ--IVKFDKEREDRIAV 253
Query: 198 KEVKDEQKIDAEMSIKASIGFRHVID---------------------------------- 223
E+K E + GFR +I+
Sbjct: 254 -----ERKERFEAQLNRQKGFRWIIEAMHGSNIANLDLMECAKDAPIFADMDTLKAEFFR 308
Query: 224 ---LLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 280
LL ++IVGHNCFLD+ +IY F GPLP TAEEF ++K +P +IDTK + N
Sbjct: 309 AQNLLRGCPRVIVGHNCFLDMVYIYHTFIGPLPATAEEFQQKLHKLWPMVIDTKYMSTHN 368
Query: 281 SILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLA-LQPSVKVEVEVDDIRSSNWNSGVK 339
+ P +L + L L+ V VE D ++
Sbjct: 369 C-----------------GDIPPMSSLEQIADQLKHLETPV---VETDSQHRKYIDTTPF 408
Query: 340 HEAGYDAFMTGCVFAQACSHL 360
HEAGYD+F+T V + + L
Sbjct: 409 HEAGYDSFLTAQVAVRLSAKL 429
>gi|118362492|ref|XP_001014473.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89296240|gb|EAR94228.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 419
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 148/340 (43%), Gaps = 85/340 (25%)
Query: 42 DFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERM 101
DFN GV Y SR+QE E DS+ SL+ +R
Sbjct: 2 DFNEVFKNGVYYFSRQQE-------------EQFDSFKSLQGVR---------------- 32
Query: 102 KDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQF-ETIFFKMRPAISLNGFTSHQLLLIQLV 160
ND +QQ ++ F + +SLN TSH + +
Sbjct: 33 -------------------------NDIRQQIIQSQSFHFKEFMSLNEKTSHGAKICNFL 67
Query: 161 -----VRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKAS 215
V+KH++ +++ + +N I ++ + K + Q E I +
Sbjct: 68 QRIGTVQKHYQRR---KINIQKITEKNDI----DDTQNQNSAKNTQQSQYSFEEYEI-MN 119
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
FR +ID + + K I+ HN F+DI H+Y KF LP ++EF +NK+FP I D+K+
Sbjct: 120 YNFRSIIDEIINLKIPIIVHNGFIDILHLYDKFLYNLPEGSQEFKKEINKHFPVIFDSKL 179
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK---STHLALQPSVKVEVEVDDIRS- 331
++NS+ L Q + S L + + + S+ ST + +P K ++D+I+
Sbjct: 180 IINSSQKLSQEVNFQS-DLRNCYEKMLKYKDIDSQIFISTDIN-EPQEK--EDIDNIQQN 235
Query: 332 ---SNWN-SGVK-----HEAGYDAFMTGCVFAQACSHLGI 362
SN+ +G+K HEAGYDA MTG +F ++ L I
Sbjct: 236 TLFSNYQINGLKENNKMHEAGYDAMMTGYIFFKSLQILNI 275
>gi|432956699|ref|XP_004085743.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Oryzias latipes]
Length = 542
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 38/279 (13%)
Query: 198 KEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 256
++ +++QK++ E + ++GF VI +S KL+VGHN LD+ H +F+ LP
Sbjct: 121 RKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFYCSLPEDL 180
Query: 257 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 316
++F FP ++DTK++ + ++ F L +L +
Sbjct: 181 QDFKEVTMCVFPRLLDTKLMAS----------------TQPFKELINNTSLAELEKQVKE 224
Query: 317 QPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 375
P VE + S + HEAGYDAF+TG F +HLG F + AH
Sbjct: 225 SPFKAPAVETAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANHLG-SFLTPPKAHISAH 283
Query: 376 NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHL 435
++ + N L+L II++ N T L +++H V+ FP
Sbjct: 284 SKLIEPFFNKLFLM----RIIDIPYLNITGPDL--QPKRDH---------VLYVTFPKEW 328
Query: 436 KAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
K D+ + S +G I V +DET+ FV S+ + V
Sbjct: 329 KTSDLYQLFS-AFG---NIQVSWIDETSAFVCLSQTDQV 363
>gi|332020023|gb|EGI60474.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Acromyrmex echinatior]
Length = 607
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 177/416 (42%), Gaps = 60/416 (14%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+ R + FL Q S++FL Y F+FN + G+SYL +Q DK L
Sbjct: 87 NFFLLPRT---IPSKNRHFLWQIESLEFLTMYGFNFNELAYNGISYL--DQTDKTLLE-- 139
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
++I++ LFN + + + +D ++ +++
Sbjct: 140 --------------QQIQENTLFNNVEQSISYKEEDNF----------KNTVTQIFEWLK 175
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
+ + ++I K P + F +L RK F ++ SG NVI I
Sbjct: 176 TASDEVDSIKVK-SPTPTFQYFMHKEL-------RKRFSNI--WTFSG-----NNVITVI 220
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
+ + + ++++ +E I +++ +GF V + L + KK I+ HN FLD I+ +
Sbjct: 221 KVLPESRQILEQ--EEGFILENTLLESYVGFSKVFNFLITLKKPIIAHNAFLDFMFIHQQ 278
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKIL-LNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
F+ PLP +F +++++ FP I DTK L ILQ K SLS S
Sbjct: 279 FYKPLPQKYIDFKNNIHQLFPTIYDTKFLSYELRKILQTPEKWKHNSLSGLMS----HFT 334
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
+ + P++++ D + + S H AG+DA+ G +F + +H+ F
Sbjct: 335 KSNGKYVMPGSPAIELVTNSDKLNDT-VPSKKYHTAGWDAYFAGYLFIR-MTHI---FAT 389
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
+ + L N K H L+ + +N+ GN + + K+ PK L+
Sbjct: 390 KQYGQGL--NFKEFTHTELMNSIKSFANCVNIVRGNTSYLRFDGPEPKSTRPKWLY 443
>gi|426381306|ref|XP_004057290.1| PREDICTED: poly(A)-specific ribonuclease PARN [Gorilla gorilla
gorilla]
Length = 634
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 110/485 (22%), Positives = 191/485 (39%), Gaps = 133/485 (27%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK---- 61
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 62 ------------ALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWL 109
AL +V+ + K+ D + I D+L +E K+ E
Sbjct: 146 YDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPC 205
Query: 110 GGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLA 169
G R K ++T+ +KM P L+ L ++K
Sbjct: 206 TGFQR---------------KLIYQTLSWKMFP-------------LVSLCLQKE----R 233
Query: 170 YLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEK 229
Y+ +S + E E ++ K K++++++ ++GF VI +++
Sbjct: 234 YIVISKVD----------EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSG 277
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 289
KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 278 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFP--------------------- 316
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMT 349
S S+ + +G KS + S + S HEAGYDA++T
Sbjct: 317 -SCSMKS--------LMMGLKS--------------AEGFPSYDTASEQLHEAGYDAYIT 353
Query: 350 GCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLA 409
G F ++LG F A ++ + N L+L ++++ N L
Sbjct: 354 GLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL- 407
Query: 410 SNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFS 469
+++H V+ FP K D+ + S +G I + +D+T+ FV S
Sbjct: 408 -QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLS 453
Query: 470 RAEMV 474
+ E V
Sbjct: 454 QPEQV 458
>gi|383863398|ref|XP_003707168.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Megachile rotundata]
Length = 533
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 169/404 (41%), Gaps = 96/404 (23%)
Query: 9 FFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKA----LK 64
F++ R LPL + Q +++FL+++ FDFN ++ G+ YL+ EQ++K+ LK
Sbjct: 89 FYLLPRS-LPLKNK--QLTWQVDALEFLSRHNFDFNKLVNHGIPYLN-EQDEKSFRQYLK 144
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
NSTY + HL + F E M +++ WL R+ EV
Sbjct: 145 ETNSTY--------------KLNHLSYDDETNFKECM-NKIQNWLFSNSRDFAVKLEVN- 188
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
P + Q L+ ++V+ EN + +I
Sbjct: 189 ----------------NPLV--------QYLIHEIVI--------------ENYDNIRII 210
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKAS-IGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
++ + KK+ ++E D E + S IGF V LL S KK I+GHN D+
Sbjct: 211 PGYKTITLKKVSANNFQEEDNGDLEQVVLDSYIGFSKVFKLLCSSKKPIIGHNVLFDLMF 270
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRM----------KKSSTS 293
Y +F+ PLP EF +++ FP I DTK L SI +R+ K+SS +
Sbjct: 271 TYQQFYKPLPAQYSEFKRNIHSIFPQIYDTKFL----SIELRRLYIDEGKEIHWKQSSLN 326
Query: 294 LSKAFSVLCPQIALGSKSTHLALQ-PSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 352
F S L L P+V ++ D+ + H AG+D+F+ G +
Sbjct: 327 YIYEFFT-------SSAGKFLTLNSPTVNLKHTSSDVNNY-------HNAGWDSFIAGFI 372
Query: 353 FAQACSHLGI-DFKQQSSSENLAHNEKL---REHVNLLYLSWTN 392
F + S + + + H+E L +E VN + +S +N
Sbjct: 373 FIKVGSVFSLKKYGSGLVERGITHSELLSGVKEFVNSINISRSN 416
>gi|115385711|ref|XP_001209402.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187849|gb|EAU29549.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 582
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 162/368 (44%), Gaps = 54/368 (14%)
Query: 27 LC-QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
LC QT +++FL F ++ GV YLSRE+E + ++ E+ + + +++
Sbjct: 149 LCFQTGAVEFLLDCSFSLDSLYKNGVPYLSREEEAQVWT-ISQARENRPV---RTELDVK 204
Query: 86 DTHLFNIPDILFAERMKDRLSEWL--GGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
DT + I F + ++ + EWL G R R + P N + + F K P
Sbjct: 205 DT---DYESIAFLDAVRQLIDEWLASGDSKRPRASYLNIPPPSNPATA---SRFSKAMP- 257
Query: 144 ISLNGFTSHQLL---LIQLVVRKHFKDLAY----LRVSGENSCSQNVIVYIESESDKKML 196
++LN F H+ L LI+++ ++ A L+ + E +Q +I E+
Sbjct: 258 LTLNKF--HKSLVHRLIEIIEYDEEREKAVIEQRLKRTKERILAQRGFRWI-VEALVGGD 314
Query: 197 MKEVKDEQKIDAEMSIKASIGFR-----------HVIDLLSSEKKLIVGHNCFLDIAHIY 245
+ ++ D S+ A G R H++ L + ++VGHN F D+ ++Y
Sbjct: 315 LSDLHARLFTDRLESLSAQYGGRMPGQTVDEFSAHLLQRLKDSRPVLVGHNLFTDLIYLY 374
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 305
F GPLP T EF V++ FP ++DTK + N + P+
Sbjct: 375 RNFLGPLPETVAEFQRKVHELFPTVVDTKYMATHNC-----------------GSINPKS 417
Query: 306 ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFK 365
+L + + P+ +++ + S + V HEAGYD+ +T VF + + L +
Sbjct: 418 SLAEINESMMKLPTPAIKIHPQHFKYS--ATKVDHEAGYDSMLTAQVFIKLSAQLHREMA 475
Query: 366 QQSSSENL 373
+++ + +
Sbjct: 476 GRTTQDGV 483
>gi|443682487|gb|ELT87068.1| hypothetical protein CAPTEDRAFT_222843 [Capitella teleta]
Length = 590
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 167/393 (42%), Gaps = 100/393 (25%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFFIF P+D +F CQ ++EG+S L+ EQE KH
Sbjct: 161 YNFFIFPLSFGPID---VQFSCQF----------------VYEGISVLNEEQEKTLSKH- 200
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGS------ 120
+R+ LF+ GL+R+ DE S
Sbjct: 201 -----------------LRENELFS-------------------GLIRDVDESSLQSVCL 224
Query: 121 EVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS 180
+V N S ++ E FF + P + + ++I+ +R+ F ++ G+
Sbjct: 225 QVTNWLNQSPKESE-FFFTIPPELP-------EYIIIK-ELRQRFSNIWITAEKGK---- 271
Query: 181 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
I+ +D+++ M+E D ++ + + K +GF V L KK ++GHNCF D
Sbjct: 272 ---ILVQRVTTDERIKMEE--DSKQAEEKKITKKMLGFTQVFRSLIKSKKPLIGHNCFTD 326
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSS----TSLSK 296
+ +Y K + PLP + + + ++ FP I DTK + +S L++ + LSK
Sbjct: 327 LLFLYEKCYQPLPESYLTYKAKLHTLFPIIYDTKSI---SSGLRKTFDSEGYFNDSKLSK 383
Query: 297 AFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356
F L G+K+ L L EV + S + HEAG+DA+MTG VF Q
Sbjct: 384 LFENLT-----GAKTPMLTL---CNPEVNHHPLSSRYKTEMLYHEAGFDAYMTGLVFLQT 435
Query: 357 CSHLGIDFKQQSSSENLA-----HNEKLREHVN 384
+ + + SSE A ++ L+++VN
Sbjct: 436 AHIVHYEAYRHLSSEMKAPSFHQYSVALKQYVN 468
>gi|348669379|gb|EGZ09202.1| hypothetical protein PHYSODRAFT_525456 [Phytophthora sojae]
Length = 465
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 140/337 (41%), Gaps = 52/337 (15%)
Query: 200 VKDEQKIDAEMSIK--ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 257
+ D+Q D EM + + IGF V+D + + +K IVGHN LD+ Y KF GPLP
Sbjct: 85 LADQQLADDEMRERNLSLIGFTAVLDAIVAARKPIVGHNMLLDLMQCYEKFHGPLPARCA 144
Query: 258 EFISSVNKYF---PHIIDTKILLNSNSILQQRMKK-----SSTSLSKAFSVLCPQIALGS 309
EF ++ + + DTK L++ Q++ + T+L F VL G
Sbjct: 145 EFQRELHAWLGAGGGVFDTKTLVD---YAMQKVDSFATHLAHTALENCFEVLSKHPFYGP 201
Query: 310 KSTHLALQPSVKVEVEVDDIR-------SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+ + QPSV+ VD R S+ H+AGYDAFMTG VF + CS LG+
Sbjct: 202 EVQ--SAQPSVR---GVDAAREYGAELMGSSQAPLQAHQAGYDAFMTGFVFLRVCSGLGV 256
Query: 363 DFK---------QQSSSENLAHNEKLREHVNLLYLS-WTNGEIINLSTGNRTSESLASNK 412
+ Q+ S++ + L N+L++S + +++L S
Sbjct: 257 SNESIASLGRSSQRPESKSKRADNALESLRNVLFVSHFLPTYVLDLPGPFPQPTPTPSRS 316
Query: 413 RKNHYPKILFECIVIVWGFP----------SHLKAWDIRECIS---KVYGPTSVISVYHV 459
R V P LK + I+ C+ + T +++V+
Sbjct: 317 RFVRMKLTRTRAPVAAGATPLPNGAGNNSCPALKTFHIKHCVGWALNLQSATRLVNVHWE 376
Query: 460 DETAVFVQFSRAEMVSKFLDLKGSLDR----NNDPIS 492
+ V+V+ AE + L ++ NDP+
Sbjct: 377 GQQCVYVELPSAEAAEQLLAVRAQTKECWGSANDPMP 413
>gi|395535236|ref|XP_003769636.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Sarcophilus harrisii]
Length = 533
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 153/358 (42%), Gaps = 71/358 (19%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F +D EF Q +S+ FL +Y FD+N + G+ Y++ EQE K
Sbjct: 89 YNFFLFPTTLGIMDS---EFSFQASSILFLNQYGFDYNKFLKNGIPYMNEEQEKK----- 140
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK---DRLSEWLGGLLRNRDEGSEVQ 123
+D +W ++R T L ++MK D ++ WL EG
Sbjct: 141 --IKQDLLTGNW----KVRST--------LDKDQMKVVIDEVTRWL----EMAQEGD--- 179
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
++L T Q +QLV+R+ + L + V
Sbjct: 180 -------------------WMTLPDITGFQAFEVQLVLRQALPTVWTLMKD------RGV 214
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+V S + L +D E + ++ GF +L KK +VGHN +D+ H
Sbjct: 215 LVKKVSRQYRWCLENSSRDHDDCRREKILLSARGFAVFFQMLVKAKKPLVGHNMMMDLLH 274
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
++ KF+ PLP + E+F +++ FP +IDTK + + I ++ +++L + + VL
Sbjct: 275 LHEKFYRPLPESYEQFKLNIHSLFPVLIDTKNV--TKEIWKELSFPRASNLLEVYEVLNS 332
Query: 304 QIALGSKSTHLALQPSVKVE-VEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ S + + S ++ VE + HEA YDAF+ G V + +HL
Sbjct: 333 DLNPTKNSCPVIIHASECIKYVE----------TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|334324288|ref|XP_001381461.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Monodelphis domestica]
Length = 615
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 153/358 (42%), Gaps = 71/358 (19%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NFF+F +D EF Q +S+ FL +Y FD+N + G+ Y++ EQE K
Sbjct: 89 YNFFLFPTTLGIMDS---EFSFQASSILFLNQYGFDYNKFLKNGIPYMNEEQEKK----- 140
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK---DRLSEWLGGLLRNRDEGSEVQ 123
+D +W ++R T L ++MK D ++ WL EG
Sbjct: 141 --IKQDLLTGNW----KVRST--------LDKDQMKVVIDEVTRWL----EMAQEGD--- 179
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
++L T Q +QLV+R+ + L + V
Sbjct: 180 -------------------WMTLPDITGFQAFEVQLVLRQALPTVWTLMKD------KGV 214
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+V S + L +D E + ++ GF +L KK +VGHN +D+ H
Sbjct: 215 LVKKVSRQYRWCLENSSRDHDDCRREKILLSARGFAVFFQMLVKAKKPLVGHNMMMDLLH 274
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
++ KF+ PLP + E+F +++ FP +IDTK + + I ++ +++L + + VL
Sbjct: 275 LHEKFYRPLPESYEQFKLNIHGLFPVLIDTKNV--TKEIWKELSFPRASNLLEVYEVLNS 332
Query: 304 QIALGSKSTHLALQPSVKVE-VEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ S + + S ++ VE + HEA YDAF+ G V + +HL
Sbjct: 333 DLNPTKNSCPVIIHASECIKYVE----------TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|449303050|gb|EMC99058.1| hypothetical protein BAUCODRAFT_59256, partial [Baudoinia
compniacensis UAMH 10762]
Length = 438
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 149/372 (40%), Gaps = 78/372 (20%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F Q+ ++DFL K FD + + GV Y+SR+ E + + +++ +D+S + +K
Sbjct: 105 FSFQSGAVDFLLKVGFDISRPFYHGVPYISRD-ESREAREMHAKRQDKSAMADIQIKPTE 163
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 145
L F +R++ ++ WL +D+ + P + + +
Sbjct: 164 TESL------AFLDRVRSEINGWLQSSNTAKDDYININPIGAEGGNE---------DGAA 208
Query: 146 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESE----SDKKMLMKEVK 201
+G + + L+ +VR + DL L G+ Q V E E +D+K + E
Sbjct: 209 SDGLSRFEKRLVHQLVRAEYPDLVSL---GKAGFVQVVRFNKEREDKVAADRKRELNERI 265
Query: 202 DEQK-------------------------------IDAEMSIKASIGFRHVIDLLSSEKK 230
+ QK + A+M + S F LL +
Sbjct: 266 NRQKGFRWVVEALLGSDITRLDLRECARDPVTGEQVFADMD-EFSAQFHRAQTLLRGNPR 324
Query: 231 LIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKS 290
+IVGHNCFLD+ +IY F G LP + E F ++ +P IIDTK + N
Sbjct: 325 VIVGHNCFLDLVYIYRTFIGQLPDSVEAFQRKLHGLWPTIIDTKYMSTHN---------- 374
Query: 291 STSLSKAFSVLCPQIALGSKSTHLALQPSVK--VEVEVDDIRSSNWNSGVKHEAGYDAFM 348
C I+ S +A Q S + ++EVD HEAGYD+F+
Sbjct: 375 -----------CGDISPVSSLEQIAAQLSAESVPKIEVDPQHDKYEAVEAFHEAGYDSFL 423
Query: 349 TGCVFAQACSHL 360
T + + S L
Sbjct: 424 TAQIAVKLSSKL 435
>gi|395839184|ref|XP_003792479.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Otolemur garnettii]
Length = 535
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 155/359 (43%), Gaps = 63/359 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ +W + + + + D ++ WL + +EG
Sbjct: 144 ----NILCGNWRVRSALDKDQI---------KVVIDEVTRWL----QLAEEGD------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
++L G Q +QLV+R+ ++ ++ + V+V
Sbjct: 180 ---------------WLTLPGIAGFQAFEVQLVLRQALPNIWTVQRE------EGVVVKK 218
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
S+ + L D E + ++ GF +L +K +VGHN +D+ H++ K
Sbjct: 219 VSKQHRWYLENTSCDRASCWREKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEK 278
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
FF PLP + ++F +++ FP IIDTK + + I ++ ++LS+ + VL +
Sbjct: 279 FFRPLPESYDQFKQNIHSLFPVIIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN- 335
Query: 308 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
+K++ + S E V HEA YDAF+ G V + +HL ++ Q
Sbjct: 336 PTKNSGPVIVHSNSCEKYV--------QMKCPHEAAYDAFLCGSVLLKV-AHLLLERMQ 385
>gi|399217688|emb|CCF74575.1| unnamed protein product [Babesia microti strain RI]
Length = 587
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 110/473 (23%), Positives = 198/473 (41%), Gaps = 100/473 (21%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F TT+++FL FDFN ++ G+ +L+ QE++ + S + +S K +
Sbjct: 142 FQVSTTALNFLRDNNFDFNQWVNHGIGHLTPMQENEKKNSILSRINELEQLKQNSTKSVD 201
Query: 86 DT----HLFNIPD---ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFF 138
T L +IPD + A + ++ EW+ ND + E
Sbjct: 202 KTPTSFDLSSIPDEKDRVVAVAVIKQVEEWIQ----------------NDDPKPLE---- 241
Query: 139 KMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMK 198
IS++ ++ Q LL+ ++ F + + E+ Q ++ S+
Sbjct: 242 -----ISMD--SAFQRLLMHTIIGHEFPTVFSHSIKRED---QRMLCVYRSQD------- 284
Query: 199 EVKDEQKIDAEM---SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLT 255
EV EQ ++ ++ +G R ++D ++ K++VGHNCF DI HIY F+G LP +
Sbjct: 285 EVYREQMNGLQLELDNLAEQVGIRTLLDCIAECNKIVVGHNCFYDILHIYQYFYGDLPES 344
Query: 256 AEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLA 315
+EF K F DTK + + L SS L L LG A
Sbjct: 345 IDEFKRIWIKKFAQTFDTKYISECHPTL------SSLQLPSTLKGLV-VYELGLFEYMCA 397
Query: 316 LQPSV--KVEVEVDDIRSSNWNSGV-------------------KHEAGYDAFMTGCVFA 354
++ S K +++++ + ++ W V H+AGYD+ MT +F
Sbjct: 398 VESSQKDKTKLQINTLPNTKWIYPVCMRGLMDTVCHSVDDLEDKSHDAGYDSLMTCIIFI 457
Query: 355 QACSHLGIDFKQQSSSENLAH-NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKR 413
++ I +Q S + L+ + + +N + L T +I L+ G+ T
Sbjct: 458 LQSNY--ILREQNSQTTKLSSIGDTMSLALNRIRLVKTQPNMIYLN-GSETDTV------ 508
Query: 414 KNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFV 466
+ + C FPS+ K W+I + S V+ IS++ ++ET+ ++
Sbjct: 509 -----RHFYMC-----NFPSNWKKWEIMKAFSPVW-----ISIHWINETSCWI 546
>gi|301108964|ref|XP_002903563.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097287|gb|EEY55339.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 456
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 200 VKDEQKIDAEMSIK--ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 257
+ DEQ D E+ + + IGF V+D++ + +K IVGHN LD+ Y KF GPLP
Sbjct: 85 LADEQLADDEIRERNLSLIGFTAVLDVIVAARKPIVGHNMLLDLMQCYEKFHGPLPGRCS 144
Query: 258 EFISSVNKYF---PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL 314
EF ++ + + DTK L++ Q++ +T L+ C ++ S H
Sbjct: 145 EFQRELHTWLGAGGGVFDTKTLVD---YAMQKVDSFATHLAHTALENCYEVL----SKHP 197
Query: 315 ALQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHLGI 362
P V+ VD R + H+AGYDAFMTG VF + CS LG+
Sbjct: 198 FYGPEVQCVRSVDTARDEQVGASQPPLQAHQAGYDAFMTGFVFLRVCSGLGV 249
>gi|297283531|ref|XP_002808334.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Macaca mulatta]
Length = 596
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 188/465 (40%), Gaps = 92/465 (19%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F+CQ++S+DFLA FDFN G+ YL++E+E + + + E S +
Sbjct: 60 FVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYV 116
Query: 86 DTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
+ P + ++ K D++ E + LL++ + + + P
Sbjct: 117 SPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC 159
Query: 144 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDE 203
GF + L+ Q + K+ K + + E VI ++ E K+ ++ E
Sbjct: 160 ---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKE 214
Query: 204 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 263
Q+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 215 QE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMT 269
Query: 264 NKYFPHI-------------IDTKILLNSN-SILQQRMKKSSTSLSKAFSVLCPQIALGS 309
FP + T I+ N++ + L++R+K+ S K S A G
Sbjct: 270 TCVFPRXAFFEDLSFIXKSQLGTDIINNTSLAELEKRLKEIPFSPPKVES------AEGF 323
Query: 310 KSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSS 369
S A S HEAGYDA++TG F ++LG F
Sbjct: 324 PSYDTA--------------------SEQLHEAGYDAYITGLCFISMANYLG-SFLSPPK 362
Query: 370 SENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVW 429
A ++ + N L+L ++++ N L +++H V+
Sbjct: 363 IHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHV 407
Query: 430 GFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 408 TFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 448
>gi|328709367|ref|XP_001946252.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 631
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/504 (22%), Positives = 215/504 (42%), Gaps = 106/504 (21%)
Query: 4 FGRHNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK 61
+ +NF+ F + P+ A + FLCQ++SM+FL+ + FDFN G+ +L+ E
Sbjct: 81 YRAYNFYTFPK---PMSRYAPDCRFLCQSSSMEFLSNHNFDFNKLFKHGIPFLTVPDEQV 137
Query: 62 ALKHVNSTYEDESLDSWHSLK-----EIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNR 116
+ + Y+ L + K I D H +I E +++ E L
Sbjct: 138 LQNELLNRYKQNCLQAQTPSKVSDCIPIPDNHKADI------ETACEKVKELL------- 184
Query: 117 DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGE 176
+S+ E I A N F +L+ ++ +K +VS +
Sbjct: 185 -----------ESETISEVII-----AEKTNSFVR------KLIYQEVYKRYPDTKVSLQ 222
Query: 177 NSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGH 235
+ +++ V + + K+LM + E++ ++ ++ ++GF V+ + + K IVGH
Sbjct: 223 SRIVEDIGNVMVAFKGRTKLLMAHERMERE---QIELEKAVGFSAVLKKIIASNKPIVGH 279
Query: 236 NCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNS-------NSILQQRMK 288
N LD+ H+ +F PLP + EF + V +DTK + + S + +K
Sbjct: 280 NMTLDVCHMIHQFCLPLPSSYSEFQAMVKTISYRFLDTKYISGTEPLKGFFGSTVLNDLK 339
Query: 289 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFM 348
KS + ++ L P++ P V E+ + H+AGYDA++
Sbjct: 340 KSLAEQCQNYTDLEPEV------------PEVGYSEEISKL----------HDAGYDAYL 377
Query: 349 TGCVFAQACSHLGIDFKQQSSSENLAHNEK-LREHVNLLYL-SWTNGEIINLSTGNRTSE 406
T VF C+ K + E+++ + L+++ N L++ + +NL N
Sbjct: 378 TSTVFVNLCNLYA---KVKGIKEHISTDSSYLKQYENKLFMIRYNEDPCLNL---NGPEP 431
Query: 407 SLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFV 466
L +++H I FP K D I+ ++ P + + + ++++T+ +V
Sbjct: 432 QL----QRSHVYHI---------TFPPEWKTID----ITNIFSPFTNVYIKYINDTSAWV 474
Query: 467 QF---SRAEMVSKFLDLKGSLDRN 487
S+A+ ++K L +L +N
Sbjct: 475 ALRDGSQAKAMNKILPKLQALHKN 498
>gi|403332061|gb|EJY65020.1| Poly A-specific ribonuclease PARN, putative [Oxytricha trifallax]
Length = 560
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GF +I LL +K I+ HN +D+ +Y KF GPLP ++F + +N P I DTK
Sbjct: 148 LGFSRIIKLLGDLQKPIISHNGVMDMMFLYEKFIGPLPENVDDFKAKLNGLLPQIFDTKH 207
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
++NS LQ +K +SLS + +C + + K+++ ++ + +
Sbjct: 208 MINSRQYLQ--LKFPESSLSTVYQSIC--------NPEQGWEYDQKIKLN-ENFKGYSLT 256
Query: 336 SGVKHEAGYDAFMTGCVFAQACSHLGI 362
V H+AG+DA MTG +F + + L
Sbjct: 257 GDVYHDAGFDALMTGILFCKFMTKLNF 283
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNS 68
F+ Q S DFLA+ +FDFN ++ YLS DK L+ ++S
Sbjct: 14 FMVQAGSFDFLAQSRFDFNKWFYDSQGYLSFHDHDKLLEKISS 56
>gi|357629823|gb|EHJ78364.1| putative poly [Danaus plexippus]
Length = 616
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 121/278 (43%), Gaps = 40/278 (14%)
Query: 201 KDEQKIDAEM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 259
+D QK + E + ++GF V ++S KL++GHN LD+ H + FF PLP F
Sbjct: 236 RDVQKKNEEWEQFEDAVGFSRVARMISQSGKLVIGHNMLLDVMHTLNHFFQPLPTDYNTF 295
Query: 260 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 319
+ FP I+DTK + +S+ K S+ L+ + + + S AL
Sbjct: 296 KEFTHCMFPRILDTKYM---SSLPPMSDKVDSSVLTHLLATM----SEAPFSVPKALCKP 348
Query: 320 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 379
+ DD +HEAGYDA++TG F +HL Q +
Sbjct: 349 GRGYTLADD---------KQHEAGYDAYITGVCFLAMINHLVRMRGDQPARLPPLEAAIW 399
Query: 380 REHVNLLYLSWT---NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLK 436
+ +N LYL+ T + INL+ + T ++H V FP K
Sbjct: 400 KPFMNKLYLAKTAHQDSPYINLTGPDPTPT-------RDH---------VFHVTFP---K 440
Query: 437 AWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
W R IS+++ P I+V +++T F+ FSR ++
Sbjct: 441 EWK-RSDISQLFSPFGQITVQFLNDTTAFIAFSRRDLA 477
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK 61
+NF++F R G F+CQ++S+DFLA FDFN I EG+SY++ E K
Sbjct: 84 YNFYVFPRGR---PGPDRLFMCQSSSLDFLASQDFDFNKLIREGISYMTEPTEAK 135
>gi|340716096|ref|XP_003396538.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
terrestris]
Length = 809
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 170/392 (43%), Gaps = 83/392 (21%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++G ++ +S KL+VGHN LD+ HI +FFG LP + EF S ++ FP I+DTK
Sbjct: 250 AVGLSILMRKISDSGKLLVGHNMLLDLCHIIHQFFGYLPESYLEFKSLLHDLFPRILDTK 309
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW 334
I+ +S Q+ K++ P LG ++ P EVE D RS +
Sbjct: 310 IICHS-----QQFKEN-----------VPSSNLGILLETVSKSPFKITEVEPIDDRSYST 353
Query: 335 NSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN-LLYLSWTNG 393
+ HEAGYDA++TG F ++LG + L+ + L +N LL +
Sbjct: 354 LAEKCHEAGYDAYITGICFIALSNYLG-SLQNPKVPIVLSDSSLLDPFLNKLLIARLKDI 412
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
INL + N ++H I F K W + IS+++ P
Sbjct: 413 PYINLVGED-------PNPNRDHILHITFP------------KEWRFND-ISQLFSPFGG 452
Query: 454 ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYET 513
+ V +++T+ ++ R + V+ + + G + T
Sbjct: 453 VHVSWLNDTSAYIGLHRRDQVNAVMKILGKTN---------------------------T 485
Query: 514 YKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKE---HESLRKVKAVNSDPSCGER 570
YK + + +AD ++G+ +V + D+ ++ HE++ K NS P+ G +
Sbjct: 486 YK------IQR--YADYQASLGV-----IVGAGDRKRKLSSHEAVSPKKGENSVPTNGVK 532
Query: 571 -TKNKNFDDVSNDSSYSQLSSDEIIDSFYTRE 601
TK+ + +V+ + +LSS+ II Y E
Sbjct: 533 TTKDDDGWEVATGNDL-ELSSESIIPCSYPHE 563
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F R PL+ A + F+CQT+ M FLA +FDFN G+ YL+ +E+K +K
Sbjct: 84 YNFYVFPR---PLNRTATDLRFMCQTSCMSFLASREFDFNKLFKLGIPYLTASEEEKLIK 140
Query: 65 HV 66
+
Sbjct: 141 RL 142
>gi|145538409|ref|XP_001454910.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422687|emb|CAK87513.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 99/220 (45%), Gaps = 26/220 (11%)
Query: 198 KEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 256
K+ KDE+K + + + GF + + + + KK IVGHNCF DI YS F P++
Sbjct: 228 KQAKDEEKYLLKTNRFQTKTGFYQIWECILNSKKYIVGHNCFADIMFCYSHFVQCPPISW 287
Query: 257 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 316
EEF V K++P I DTK ++ S L++ K TS S +A K+ +
Sbjct: 288 EEFKEDVVKHWPPIYDTKYIIQSAQPLEKIRSKFETSTS------VENLAEFIKNNMNYI 341
Query: 317 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHN 376
Q V N + H AG+DA+MTG +F +L DF QQ E L+
Sbjct: 342 QIDV------------NLDQNAYHTAGFDAYMTGFIFI----NLTKDFTQQ---ELLSQK 382
Query: 377 EKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 416
KL + N ++ E I L+ +RKN
Sbjct: 383 NKLNQFKNNYSINLNTAEDIKLTQKYIIYIKFPEEERKNQ 422
>gi|224129918|ref|XP_002320703.1| predicted protein [Populus trichocarpa]
gi|222861476|gb|EEE99018.1| predicted protein [Populus trichocarpa]
Length = 544
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 189/445 (42%), Gaps = 69/445 (15%)
Query: 87 THLFNIPDILFAERMKDRLSEWLGGL--LRNRDEGSEVQPSFNDS--KQQFETIFFKMRP 142
T ++ D +F ER+K + W R EG+++Q + S K + RP
Sbjct: 136 TSTLSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYDSRP 195
Query: 143 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVK 201
++++ + Q L+ ++++ D+ L + + Q V +V S+ DK +L +++
Sbjct: 196 CMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQGKLQ 255
Query: 202 -DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
DEQ++ ++ GFR VIDL+S+ +K +V H PLP T +EF+
Sbjct: 256 NDEQELKKKVR-----GFREVIDLISASQKPVVSHG----------SLNAPLPPTVDEFM 300
Query: 261 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV 320
S+ FP +ID L+ S L++ TS+ A S L + P +
Sbjct: 301 CSLRLAFPLVIDVNHLMKEISALRK-----VTSIPVAISQL----------KNRFFTP-I 344
Query: 321 KVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLR 380
+E+ + N H G + +FA+ CS L ID S E + L
Sbjct: 345 DMEIPCQAME----NEDTIH--GQNVVKICELFARLCSILKIDPAAVKSDEEKGAS-ALE 397
Query: 381 EHVNLLYLSWT------NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 434
+ N+ T +GEI + +NK N+ + E +V +WGF
Sbjct: 398 AYANIFSPFCTASEEPIDGEI-----------KIWTNKWTNNTRTVSCEDLVFLWGFGDR 446
Query: 435 LKAWDIRECISKVYGPTSV-ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISV 493
+ A ++ + + + S V VD + V F + + FL+ ++++ +D +
Sbjct: 447 VTAGVLKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQHGLTETFLN---TMNKCSD---M 500
Query: 494 LHPLAKLLEGGNTCAASYETYKEIC 518
PL +++ G AA YETY C
Sbjct: 501 RGPLREMVSEGLR-AAGYETYNRAC 524
>gi|403284980|ref|XP_003933822.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Saimiri boliviensis
boliviensis]
Length = 531
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 158/363 (43%), Gaps = 71/363 (19%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W + + + + D ++ WL L + D
Sbjct: 144 ----DILSGNWRVRSSLDKDQI---------KVVIDEVTRWLD-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ ++ L+ G V+V
Sbjct: 180 ---------------WMTLPGIAGFQAFEVQLVLRQALHNIWTVLKDDG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ +++
Sbjct: 218 KVSKQHRWYLQSTSCDRESCWKENILLSAKGFSVFFHMLVKAQKPLVGHNMMMDLLYLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ +SLS+ + VL +
Sbjct: 278 KFFRPLPESYDQFKQNIHSLFPVLIDTKNV--TKDIWKEMNFPRVSSLSEVYEVLNSDLN 335
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL------ 360
+K++ + ++ E V+ + HEA YDAF+ G V + +HL
Sbjct: 336 -PTKNSGPEIVHAISCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHLLLQKVH 385
Query: 361 GID 363
GID
Sbjct: 386 GID 388
>gi|221115125|ref|XP_002160561.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Hydra
magnipapillata]
Length = 502
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 147/328 (44%), Gaps = 36/328 (10%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F+CQ++S+DFLAK FDFN H+GVS++S +E+KA + + + + H I+
Sbjct: 103 FVCQSSSIDFLAKNGFDFNKLFHQGVSFMSPWEEEKAREKLKKEINFIAHNELHRRTLIQ 162
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 145
T N+ D + E + RD+ + + ++ + K
Sbjct: 163 TTT--NVSDDV----------EKKSSVFIPRDQRDFINSVCENIEKFMKDDSLKTYDLPP 210
Query: 146 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 205
+ F + LL + + K+ + L V EN+ + +I ++ ++++ K + +E
Sbjct: 211 CSPF--QRTLLYEYLEEKYPRGLYLKSVVNENN--EKIIRGVKITKNEEIFNKRIAEENL 266
Query: 206 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 265
+ E+ IGF VI LLS +K ++GHN +D+ + FF P EF +
Sbjct: 267 LLDEI-----IGFTKVIRLLSDCRKPLIGHNMLMDLFLTTTNFFSLPPENLSEFKVLLIS 321
Query: 266 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 325
F I DTK+L S+ K TSL K + + + P VK+ +
Sbjct: 322 LFSSIFDTKLLC---SMQPLSSKVGGTSLEKLKTFV---------DDNRLPNPEVKLSNK 369
Query: 326 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
+++ S H+AGYDA+ TG VF
Sbjct: 370 LNNHSKS---KNEYHQAGYDAYCTGLVF 394
>gi|198278452|ref|NP_001030038.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Mus musculus]
gi|187957406|gb|AAI58034.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Mus
musculus]
Length = 531
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 161/380 (42%), Gaps = 68/380 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+W + + + + D++++WL +EG +
Sbjct: 144 ----SILRGNWRVRSSLDKDQI---------KVVIDKVTQWLDL----AEEGDQ------ 180
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
++L G Q +QLV+R+ ++ V E + VIV
Sbjct: 181 ----------------MTLPGIAGFQAFEVQLVLRQALPNI--WTVLKE----EWVIVKK 218
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
S+ + L D+ E + ++ GF +L +K +VGHN +D+ H++ K
Sbjct: 219 VSQPQRWYLEHASCDQVSCWKEQILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEK 278
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
FF PLP + ++F +++ FP +IDTK + + I ++ ++L + + VL +
Sbjct: 279 FFRPLPESYDQFKQNIHSLFPVLIDTKNV--TKDIWKELRFPRVSNLLEVYEVLSSNLNP 336
Query: 308 GSKSTHLALQP-SVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S + + K E + HEA YDAF+ G V + +HL + Q
Sbjct: 337 TKDSGPVIIHARQCKKYAE----------TKCPHEAAYDAFLCGSVLLKV-AHLLL---Q 382
Query: 367 QSSSENLAHNEKLREHVNLL 386
+ H +++++L
Sbjct: 383 RVHGNGAVHEPAFPQYLDVL 402
>gi|350581696|ref|XP_003124631.3| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Sus
scrofa]
Length = 523
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 136/321 (42%), Gaps = 42/321 (13%)
Query: 155 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 214
L+ Q + K+ K + + E VI ++ E K+ ++ EQ+ +K
Sbjct: 97 LIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKQAKEQE-----ELKD 151
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 152 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK 211
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 333
++ + ++ F + +L L P +VE + S +
Sbjct: 212 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYD 255
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 393
S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 256 TASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM---- 310
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 311 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 355
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
I + +D+T+ FV S+ E V
Sbjct: 356 IQISWIDDTSAFVSLSQPEQV 376
>gi|390462231|ref|XP_002806785.2| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1 [Callithrix
jacchus]
Length = 510
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 158/363 (43%), Gaps = 71/363 (19%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 89 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH-- 142
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W + + + + D ++ WL L + D
Sbjct: 143 ----DILSGNWKVRSSLDKDQI---------KVVIDEVTRWLD-LAKEGD---------- 178
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G Q +QLV+R+ ++ L+ G VIV
Sbjct: 179 ---------------WMTLPGIVGFQAYEVQLVLRQALHNIWTVLKDDG-------VIVK 216
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ +++
Sbjct: 217 KVSKQHRWYLQSTSCDRESCWKENILLSAKGFSVFFHMLVKAQKPLVGHNMMMDLLYLHE 276
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ +SLS+ + VL +
Sbjct: 277 KFFRPLPESYDQFKQNIHSLFPVLIDTKNV--TKDIWKEMNFPRVSSLSEVYEVLNSDLN 334
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL------ 360
+K++ + ++ E V+ + HEA YDAF+ G V + +HL
Sbjct: 335 -PTKNSGPEIVHAISCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHLILQKVH 384
Query: 361 GID 363
GID
Sbjct: 385 GID 387
>gi|426254331|ref|XP_004020832.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Ovis
aries]
Length = 463
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 43/288 (14%)
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +
Sbjct: 71 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 124
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 125 FYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSL 168
Query: 308 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 169 AELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLS 227
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S A ++ + N L+L ++++ N L +++H V
Sbjct: 228 PPKSHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 272
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 273 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 316
>gi|344252660|gb|EGW08764.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 364
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 159/369 (43%), Gaps = 98/369 (26%)
Query: 13 QRQELPLDGAAYEFLCQT----TSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNS 68
Q Q++ L E+ +T +S+ FL +Y FD+N + G+ Y++ EQE
Sbjct: 40 QPQQISLFDLPSEWYMKTRQSASSVQFLNQYGFDYNKFLKNGIPYMNEEQE--------- 90
Query: 69 TYEDESLDSWHSLKEIRDTHL---FNIPDILFAERMK---DRLSEWLGGLLRNRDEGSEV 122
K++R++ L + + L +++K D+++ WL +EG
Sbjct: 91 -------------KKLRESILRGNWRVGSSLDKDQIKVVIDKVTRWLDL----AEEGDR- 132
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQ 181
++L G Q +Q+V+R+ D+ L+ G
Sbjct: 133 ---------------------MTLPGIAGFQAYEVQMVLRQALPDIWTVLKDEG------ 165
Query: 182 NVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 241
V+V S+ + L + D+ + + + ++ GF I++L +K ++GHN +D+
Sbjct: 166 -VVVKKVSQPHRWYLENDSCDQIRCWRQEILLSARGFSGFIEMLVRAQKPLIGHNMTMDL 224
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
H++ KFF PLP + +EF +++ FP +IDTK + S I ++ +++LS+ + VL
Sbjct: 225 LHLHEKFFKPLPESYDEFKQNIHSLFPVVIDTKNV--SKDIWKELHFPQASNLSEVYDVL 282
Query: 302 C----------PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGC 351
P+I GSK A + H+AG DAF+ G
Sbjct: 283 SSDLNPTNNSGPEIIHGSKCEKYA-------------------ENKYSHKAGNDAFLCGS 323
Query: 352 VFAQACSHL 360
+ + +HL
Sbjct: 324 ILLK-VAHL 331
>gi|346464857|gb|AEO32273.1| hypothetical protein [Amblyomma maculatum]
Length = 498
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 154/391 (39%), Gaps = 98/391 (25%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
EF Q +S++FL + FDFN C + GV Y +R S +
Sbjct: 102 EFSVQASSVEFLCRNGFDFNKCFYGGVPYANR-----------------------SFRRA 138
Query: 85 RDTHLFN-----IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFK 139
D +L N P + ++ D + WL +R +GS +D+
Sbjct: 139 LDAYLLNEQYLEKPGL---SKLYDSVRHWLNN--NDRSKGS------SDN---------- 177
Query: 140 MRPAISLNGFTSHQLLLIQLVVRKHFKDLAY------LRVSGENSCSQNVIVYIESESDK 193
+++L+ + ++ + +R F L + LRV+ +C+ +
Sbjct: 178 ---SLTLSPHDDLSIPVLMVDLRTRFPGLEFDVKPEGLRVTLPPNCAPTKVA-------- 226
Query: 194 KMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLP 253
+AE+ + A GF + L S K IVGHN LD+ +Y++F PLP
Sbjct: 227 ------TDGRAPTEAEL-VDAVRGFSRCFETLVSSGKPIVGHNMLLDLLMLYNQFCEPLP 279
Query: 254 LTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA--FSVLCPQIALGSKS 311
T E ++++ FP + DTK + + ++Q K T LS A FSV
Sbjct: 280 PTFAELKAALSAVFPLVYDTK---HMSLQIRQTSKWMKTVLSGADLFSV----------- 325
Query: 312 THLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF---AQACSHLGIDFKQQS 368
H AL V V I HEAG DA+ GCVF A +HL +
Sbjct: 326 -HKAL---TDVLVPYAPIVKGAPAGLRAHEAGSDAYAAGCVFIKLAHILAHLALQPTHHL 381
Query: 369 SSENLAHNEKLREHVNLLYLSWTNGEIINLS 399
S + H E ++ + N + L INLS
Sbjct: 382 SWRH--HQEAVKAYANRVNLIRAQYHHINLS 410
>gi|452843543|gb|EME45478.1| hypothetical protein DOTSEDRAFT_52745 [Dothistroma septosporum
NZE10]
Length = 585
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 158/396 (39%), Gaps = 99/396 (25%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F Q+ + +FL FD GV YLSR E K + + +D+ +S+ +I+
Sbjct: 106 FSFQSGAAEFLLGVGFDIGRPFRLGVPYLSR-AESKVAREKFAMRQDK-----NSMADIQ 159
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF-NDSKQQFETIFFKMRPAI 144
+ F ER++ ++ W+ RN D P++ N + +ETI R A
Sbjct: 160 -IKPTETESLAFLERVRGDINTWVKS--RNMD-----TPAYLNIAPVGYETIHDGQRQAE 211
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
L+ F L+ +VR F +L + G +I+ K + + ++
Sbjct: 212 ELSRFEKR---LVHQLVRAEFPELVTVSKKG----------FIQIVRFNKEREERIAADR 258
Query: 205 KIDAEMSIKASIGFRHVID----------------------------------------- 223
+ D E I GFR +I+
Sbjct: 259 RRDLEERIGRQKGFRWIIEALHGSNISNLDLRECAKDSVTGEPVFADMDDYKAQFNRAQG 318
Query: 224 LLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSIL 283
+L K+IVGHNCFLD+ +IY F G LP EEF ++K +P ++DTK + N
Sbjct: 319 MLRGNPKVIVGHNCFLDMVYIYRTFIGELPDNVEEFQRRLHKLWPVVVDTKYMTTHN--- 375
Query: 284 QQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD-DIRSSNWNS-GVKHE 341
C I+ S +A Q S + +D D + + +N+ HE
Sbjct: 376 ------------------CGDISPISSLEQIAEQLSAQTTPILDTDKQHTKYNTMAAFHE 417
Query: 342 AGYDAFMTGCVFAQAC-------SHLGIDFKQQSSS 370
AG+D+F+T V + +++ +D K QS++
Sbjct: 418 AGFDSFLTAQVAVKLSAKLDCEGAYIDVDDKGQSAA 453
>gi|332023541|gb|EGI63777.1| Poly(A)-specific ribonuclease PARN [Acromyrmex echinatior]
Length = 611
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 162/362 (44%), Gaps = 72/362 (19%)
Query: 7 HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK 64
+NF++F + P++ + F+CQ++S+ FLA FDFN G+ YL+ E+K +K
Sbjct: 124 YNFYVFPK---PINRQVTDTRFMCQSSSLIFLANKDFDFNKLFKHGIPYLTASDEEKLVK 180
Query: 65 HVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
+ E + + + I DT + P I E + R+ +L
Sbjct: 181 RLE---EKRKIKEENYVIPITDT---DKPQI---EEICSRIENFLA-------------- 217
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+D+K+ TI NGF L+ R + + + EN ++
Sbjct: 218 --SDAKEL--TI-------DHCNGFMRR---LVHQEARIRWPNKIIVENKMENGWQCLLV 263
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ +++ + ++++K++ + ++ S + +++ +K+IVGHN LD+ HI
Sbjct: 264 RRAGTKEEEEERENQKQEKEKLEVKEAVGLSNLMKKIVE----SEKIIVGHNMLLDLCHI 319
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+FF LP EF + ++ FP+++DTK++ S K F
Sbjct: 320 VHQFFTSLPKDYLEFKTLLHGLFPNLLDTKVICQSQHF-------------KEF------ 360
Query: 305 IALGSKSTHLALQPSVKVEVEVDDI-----RSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+GS + +L + K + DI RS + ++ HEAGYDA++TG F ++
Sbjct: 361 --VGSSNLNLLIDIVSKPPFCIPDIENVEGRSYSMSTEKYHEAGYDAYITGLCFIALSNY 418
Query: 360 LG 361
LG
Sbjct: 419 LG 420
>gi|391342764|ref|XP_003745685.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Metaseiulus
occidentalis]
Length = 747
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 159/376 (42%), Gaps = 82/376 (21%)
Query: 8 NFFIF--QRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQED----- 60
N F + QRQ A+ F Q + + FL + FD N C+ EGV +L + D
Sbjct: 202 NIFTYPDQRQ-------AFRFRNQASCLSFLVDHGFDLNRCVREGVPFLRPAELDDYQER 254
Query: 61 ---KALKHVNSTYEDE-----------SLDSWHSLKEIRDTHLFNIPDI-LFAERMKDRL 105
+ ++ + S +E E S D+ +S D L P + ++ E + +
Sbjct: 255 IKRRHIRELASLFEQEQAGRPVKGFNTSADALNS-SLTSDNFLDMDPAVRIYLEGVMPLV 313
Query: 106 SEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHF 165
S+W+ G + ++D S + P+ ND F +M + + K F
Sbjct: 314 SKWMSGKMPDQD--SVLLPACND--------FIRM---------------TVYRQIEKKF 348
Query: 166 KDLAYLR--VSGENSCSQNVIVYIE-SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVI 222
D + V +N Q +I+ S SD M + ++ D +++ S G V+
Sbjct: 349 PDDKFQMEAVRADNGADQRGSKHIKISRSD--MSPHQRMSQRHRDEMEALRDSFGVGSVL 406
Query: 223 DLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSI 282
L + +K +VGHN DI H+ +F PLP EF + FP + DTK + + +I
Sbjct: 407 KTLVTSQKPVVGHNSLRDILHVIHQFVAPLPEDFGEFQLLCRELFPVLFDTKQMSVTGTI 466
Query: 283 LQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE----VDDIRSSNWNSGV 338
K+S S+ V QI K+ H P K+ E DD+
Sbjct: 467 ------KASIRGSRLVDVFN-QI----KNQHDKAFPIPKIHSEPGFAYDDMTR------- 508
Query: 339 KHEAGYDAFMTGCVFA 354
+HEAG+DA++TG +FA
Sbjct: 509 EHEAGFDAWLTGYIFA 524
>gi|449277437|gb|EMC85602.1| Poly(A)-specific ribonuclease PARN, partial [Columba livia]
Length = 552
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 37/261 (14%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GF VI +++ KL++GHN LD+ H +F+ PLP EF + FP ++DTK
Sbjct: 262 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKELTSCVFPRLLDTK 321
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 333
++ + ++ F + +L L P +VE + S +
Sbjct: 322 LMAS----------------TQPFKEIINNTSLAELEKRLKEVPFSPPKVESAEGFPSYD 365
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 393
S HEAGYDA++TG F + LG F S A +E + N L+L
Sbjct: 366 TASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKSHVSARSELIEPFFNKLFLM---- 420
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 421 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 465
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
I V +D+T+ FV S+ E V
Sbjct: 466 IQVSWIDDTSAFVSLSQPEQV 486
>gi|451850236|gb|EMD63538.1| hypothetical protein COCSADRAFT_143653 [Cochliobolus sativus
ND90Pr]
Length = 620
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 146/386 (37%), Gaps = 105/386 (27%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
E Q+ + FL K FD GV YLSR++ DKA + E ++ LKE
Sbjct: 106 EIRFQSGACTFLLKNGFDLGLPFANGVQYLSRQEADKAKQMACDRLEKKNPVPDLQLKE- 164
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
++ + F R+++ +++W D + RP I
Sbjct: 165 -----GDVESLDFMRRVREAINKWKTTTSSGLDITTHTG--------------LPERPKI 205
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
+ T + L+ +VR F DL + G + C + + + E++ MK DE
Sbjct: 206 PV--ITRFEKRLVHQLVRAEFPDLVTM---GRSECVRIIQLDPVREAENMQRMKNRVDE- 259
Query: 205 KIDAEMSIKASIGFRHV----------------------------------------IDL 224
SI GFR + ++
Sbjct: 260 ------SILRQTGFRWIFEALVKGGNLSRTDLLYVARTTGMAPTADTDDTRTRFDKAMER 313
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------L 277
L +++ ++VGHN F DI ++Y F G LP T +F ++++ FP IIDTK L L
Sbjct: 314 LKTKQPVLVGHNMFTDIVYLYRTFVGELPDTLNDFQDAIHELFPKIIDTKYLATFAEGDL 373
Query: 278 NSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG 337
N++ LQ IA G L+ QP + D + + +
Sbjct: 374 NASPTLQ-------------------DIAQG-----LSSQPLPDIITHADHPKYQDIEAF 409
Query: 338 VKHEAGYDAFMTGCVFAQACSHLGID 363
HEAGYD+ +T + + + LG++
Sbjct: 410 --HEAGYDSLLTATIMIKLAARLGVE 433
>gi|270013255|gb|EFA09703.1| hypothetical protein TcasGA2_TC011836 [Tribolium castaneum]
Length = 535
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 67/337 (19%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYL-SREQEDKALKHVNSTYEDESLDSWHSLKEI 84
F Q +++ FL Y+FDFN + GV +L S++ D LK + E+ H L E
Sbjct: 103 FYFQASTLSFLTMYKFDFNKFAYSGVPFLNSKDARDLRLKLKSGDLVGENCTLRHELDEA 162
Query: 85 RDTHLFNIPDILFAERMKDRLSEW-----LGGLLRNRDEGSEVQPSFNDSKQQFETIFFK 139
H P I S+W +G L E+ +N +E ++F
Sbjct: 163 LKAH---TPVI----------SKWYNSCKIGDFL-------EIPDVYNRFGPFYELLYF- 201
Query: 140 MRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKE 199
+ +RK FK+L +G C + V +E+D L K
Sbjct: 202 -----------------LHKHLRKRFKNLWTYDRNGV-FCVKKV-----TEADFTELEKR 238
Query: 200 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 259
+ I +++ GF+HV D L++ KK IVGHN D+ + + F LP + ++
Sbjct: 239 CSLDDAILDDLT-----GFKHVFDTLTALKKPIVGHNVLQDLMIMINNFENALPESYLQY 293
Query: 260 ISSVNKYFPHIIDTK-ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQP 318
+ ++ FP I DTK I + + + TSLS F G HLA+
Sbjct: 294 KALAHQLFPTIFDTKTIYYELRATIPREKLPDDTSLSALFDYF-----RGGLGRHLAVD- 347
Query: 319 SVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 355
S +E +D + ++ HEAG+D+F G +F +
Sbjct: 348 STAIECNIDQGKFGSY-----HEAGWDSFCAGYIFLR 379
>gi|91090816|ref|XP_971302.1| PREDICTED: similar to Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Tribolium castaneum]
Length = 510
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 141/337 (41%), Gaps = 67/337 (19%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYL-SREQEDKALKHVNSTYEDESLDSWHSLKEI 84
F Q +++ FL Y+FDFN + GV +L S++ D LK + E+ H L E
Sbjct: 107 FYFQASTLSFLTMYKFDFNKFAYSGVPFLNSKDARDLRLKLKSGDLVGENCTLRHELDEA 166
Query: 85 RDTHLFNIPDILFAERMKDRLSEW-----LGGLLRNRDEGSEVQPSFNDSKQQFETIFFK 139
H P I S+W +G L E+ +N +E ++F
Sbjct: 167 LKAH---TPVI----------SKWYNSCKIGDFL-------EIPDVYNRFGPFYELLYF- 205
Query: 140 MRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKE 199
+ +RK FK+L +G C + V +E+D L K
Sbjct: 206 -----------------LHKHLRKRFKNLWTYDRNGV-FCVKKV-----TEADFTELEKR 242
Query: 200 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 259
+ I +++ GF+HV D L++ KK IVGHN D+ + + F LP + ++
Sbjct: 243 CSLDDAILDDLT-----GFKHVFDTLTALKKPIVGHNVLQDLMIMINNFENALPESYLQY 297
Query: 260 ISSVNKYFPHIIDTK-ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQP 318
+ ++ FP I DTK I + + + TSLS F G HLA+
Sbjct: 298 KALAHQLFPTIFDTKTIYYELRATIPREKLPDDTSLSALFDYF-----RGGLGRHLAVD- 351
Query: 319 SVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 355
S +E +D + ++ HEAG+D+F G +F +
Sbjct: 352 STAIECNIDQGKFGSY-----HEAGWDSFCAGYIFLR 383
>gi|302663558|ref|XP_003023421.1| CAF1 family ribonuclease, putative [Trichophyton verrucosum HKI
0517]
gi|291187415|gb|EFE42803.1| CAF1 family ribonuclease, putative [Trichophyton verrucosum HKI
0517]
Length = 425
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 8/195 (4%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 180 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 239
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE-----VEVDDIRSSNWNSGVK 339
ST + S + P+ + S HL L K+ +E SS S
Sbjct: 240 DASSALSTLMENLGSRVVPKFGILFHSMHLLLLSPRKLTFCANGIETHPDHSSYTVSTPM 299
Query: 340 HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNL--LYLSWTNGEIIN 397
HEAGYD+ MT +F + L + +Q +EN + + H L L + E
Sbjct: 300 HEAGYDSLMTAQIFLKLAVQL-YETNEQGKAENTTQQKLVYGHATKFDLLLDMDDEESGA 358
Query: 398 LSTGNRTSESLASNK 412
S G +SL K
Sbjct: 359 SSVGPSEQDSLLEQK 373
>gi|194389110|dbj|BAG61572.1| unnamed protein product [Homo sapiens]
Length = 464
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 43/288 (14%)
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +
Sbjct: 71 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 124
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 125 FYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSL 168
Query: 308 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 169 AELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLS 227
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
A ++ + N L+L ++++ N L +++H V
Sbjct: 228 PPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 272
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 273 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 316
>gi|403274049|ref|XP_003928802.1| PREDICTED: poly(A)-specific ribonuclease PARN [Saimiri boliviensis
boliviensis]
Length = 464
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 43/288 (14%)
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +
Sbjct: 71 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 124
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 125 FYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSL 168
Query: 308 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 169 AELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLS 227
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
A ++ + N L+L ++++ N L +++H V
Sbjct: 228 PPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 272
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 273 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 316
>gi|121717008|ref|XP_001275977.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119404134|gb|EAW14551.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 578
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 172/396 (43%), Gaps = 90/396 (22%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
+++ Q+ +++FL + +F +A GV YLSRE+E+ A+ E + H+L ++
Sbjct: 103 DWMMQSGAVEFLLENKFSMDAVFKNGVCYLSREEEELAMA---KAIERRDRVATHTLIDV 159
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
++T L ++ + A R+ D +WL + RD + P Q K P+
Sbjct: 160 KETELESLAFLQAARRLVD---DWLA-IRTTRDSYLNIPPPTRIGHLQSS----KSLPS- 210
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
+LN F Q L+ ++ + L + G I I+ + +++ ++E Q
Sbjct: 211 TLNRF---QKRLVHQLIEVEYPSLVTISNPG-------FIQIIDYDEERERSLRE----Q 256
Query: 205 KID-AEMSIKASIGFRHVIDLLSS------------------------------------ 227
+++ + I GFR + + L+
Sbjct: 257 RLNRVQERIWKQTGFRWIAEALAGGDLSNLDTSFFIGIMSNSAAVKPIYSLREFSEKLRE 316
Query: 228 ---EKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
E + ++GHN F D+ + Y FFGPLP E+F S++++ FP ++DTK + N
Sbjct: 317 RLQEHRPVLGHNIFSDLIYFYRCFFGPLPDKVEDFQSTMHELFPVLMDTKYMATHNC--- 373
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-GVKHEAG 343
+ P+ +L + L+ + + K+E+ + S +N+ ++HEAG
Sbjct: 374 --------------GSINPRSSLPEINDSLSKRATPKIEIHS---QYSKYNTRKIEHEAG 416
Query: 344 YDAFMTGCVFAQACSHL--GIDFKQQSSS-ENLAHN 376
YD+ ++ +F + + L G + +SSS +L H
Sbjct: 417 YDSLLSAQIFIRLSAQLRDGRESPPESSSFADLPHQ 452
>gi|426355066|ref|XP_004044958.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Gorilla gorilla gorilla]
Length = 513
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 55/295 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W ++ D H + + D ++ WL L + D
Sbjct: 144 ----DILTGNWR-VRSSPDKHQIKV--------VIDEVTRWLD-LAKEGD---------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 218 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL
Sbjct: 278 KFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVL 330
>gi|119482273|ref|XP_001261165.1| CAF1 family ribonuclease, putative [Neosartorya fischeri NRRL 181]
gi|119409319|gb|EAW19268.1| CAF1 family ribonuclease, putative [Neosartorya fischeri NRRL 181]
Length = 581
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 169/383 (44%), Gaps = 61/383 (15%)
Query: 29 QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTH 88
Q+++++FL + +F ++ + +GV YLSRE+E +A+ + E + H+ ++++T
Sbjct: 107 QSSAIEFLLENKFSIDSILKQGVQYLSREEEKQAIANA---IERRDRVATHTSIDVKETE 163
Query: 89 LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 148
++ + R+ D +WL L R+E + P + K P+ +LN
Sbjct: 164 HESLAFLKAVRRLVD---DWLA-LGATREEYLNIPPPTRLGVSRSS----KSLPS-ALNR 214
Query: 149 FTS---HQLLLIQ-----LVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEV 200
F HQL+ ++ + R F + E S + + + + K+ + V
Sbjct: 215 FQKRLVHQLIEVEYPSLVTISRPDFIQIIDYNEERERSVREQRVTRVRERTWKQTGFRWV 274
Query: 201 K------DEQKIDAE-----MSIKASIGFRHVIDLLSSE--------KKLIVGHNCFLDI 241
D +D+ M+ A++ ++ ++ S + + ++VGHN F D+
Sbjct: 275 AEALAGGDLTNLDSGYFIGIMASSAAVEPKYPLNEFSDKLKQRLKEHRPVLVGHNLFSDL 334
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301
+ FFGPLP EEF S ++ FP ++DTK + N +
Sbjct: 335 IYFCRCFFGPLPSKVEEFQSMAHELFPVLMDTKYMATHNC-----------------GSI 377
Query: 302 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL- 360
P+ +L + +LA + K+ + S ++HEAGYD+ +T VF + + L
Sbjct: 378 NPRSSLSELNENLAKKAFPKISIHPQ--HSKYTTQKIEHEAGYDSLLTAQVFIRLSAQLR 435
Query: 361 --GIDFKQQSSSENLAHNEKLRE 381
G++ QQ S+++ L++
Sbjct: 436 EGGVELPQQKSTKDAQDTSNLQQ 458
>gi|432111779|gb|ELK34824.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Myotis davidii]
Length = 494
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 120/272 (44%), Gaps = 60/272 (22%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 52 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKHGIPYMNEEQE-KQIKHNI 107
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK---DRLSEWLGGLLRNRDEGSEVQP 124
T +W +R + L ++MK D ++ WL +EG
Sbjct: 108 LT------GNW----RVRSS--------LDKDQMKAVIDEVTRWL----HLAEEGD---- 141
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNV 183
++L G Q +QLV+R+ D+ LR Q V
Sbjct: 142 ------------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQAV 176
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLL-SSEKKLIVGHNCFLDIA 242
IV S + L D + E + ++ GF +L ++K+ +VGHN +D+
Sbjct: 177 IVKKVSRQHRWYLQNTSSDRESCWKEKILLSARGFSVFFQMLVKAQKQPLVGHNMLMDLL 236
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
H++ KFF PLP +F S+++ FP ++DTK
Sbjct: 237 HLHEKFFRPLPENYHQFKSNIHSLFPVLLDTK 268
>gi|328717201|ref|XP_001944100.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 534
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 57/355 (16%)
Query: 29 QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTH 88
QT+ ++FL K+ FDFN H V YL+ E+E K + E LD +
Sbjct: 106 QTSCVEFLCKHNFDFNKLFHSRVPYLTDEEELKI--------KSEMLDEFFF-------- 149
Query: 89 LFNIPDILFAERMKDR-LSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 147
D F +K R + E L +L+ E + N +Q F I PA ++
Sbjct: 150 -----DKYFETNIKFRSIEEELMKVLKIVSEWYDTA---NYGEQTFLEINGCNEPAYTI- 200
Query: 148 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 207
L+Q + K L Y+ + E+ N I IE+ ++ ++L K + + K++
Sbjct: 201 --------LMQYYL---LKKLKYILID-ESQLGLN-ITKIEANTNSEILNKTIHENLKLN 247
Query: 208 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 267
+ +G ++++ L+S KK I+GHNC LDI + ++FF PLP ++F + V F
Sbjct: 248 L---LNKMMGIKYLMKLISKLKKPIIGHNCALDILILSNQFFTPLPENFKDFQNFVFNNF 304
Query: 268 PHIIDTKILLNS-NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV 326
I DTK+L I+ + K +SL + +S L + G K + +E E
Sbjct: 305 GPIYDTKLLCKEVKRIVSKNDKWIGSSLPEIYSFL--KDGDGKKYSDTIRIQLTGIE-EP 361
Query: 327 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE 381
D++ H AG+DA+ TG F + H+ F S +EN++ L E
Sbjct: 362 QDMKL--------HHAGWDAYYTGYCFVRMI-HIIKSF--SSKTENMSLRYTLTE 405
>gi|344295143|ref|XP_003419273.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Loxodonta africana]
Length = 531
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 150/353 (42%), Gaps = 63/353 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQERK-IKH-- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+W + + + + DR++ WL +EG
Sbjct: 144 ----SILCGNWRVRSSLDKDQI---------KMVIDRVTRWLAL----AEEGD------- 179
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
++L G T Q +QLV+++ ++ + Q V V
Sbjct: 180 ---------------WMTLPGITGFQAFEVQLVLQQALPNIWTV------PKDQGVTVKK 218
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
S+ + L + ++ E + + G + +L +K +VGHN +D+ H++ K
Sbjct: 219 VSKQHRWYLENTSCERERCWKEKILLYAKGLSVLFQMLVKAQKPLVGHNMLMDLLHLHEK 278
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
FF LP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 279 FFRHLPESYDQFKLNIHHLFPILIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNP 336
Query: 308 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S + + S K E + + HEA YDAF+ G V + +HL
Sbjct: 337 TKNSGPVIVHAS-KCEKYAE--------TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|71002704|ref|XP_756033.1| CAF1 family ribonuclease [Aspergillus fumigatus Af293]
gi|66853671|gb|EAL93995.1| CAF1 family ribonuclease, putative [Aspergillus fumigatus Af293]
gi|159130086|gb|EDP55200.1| CAF1 family ribonuclease, putative [Aspergillus fumigatus A1163]
Length = 573
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 63/384 (16%)
Query: 29 QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTH 88
Q+++++FL + +F ++ + GV YLSRE+E +A + + E + H+L ++++T
Sbjct: 81 QSSAIEFLLENKFSIDSILKHGVQYLSREEEKRA---IANAIERRDRVATHTLIDVKETE 137
Query: 89 LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 148
++ F + ++ + +WL L R+E + P Q K P+ +LN
Sbjct: 138 HESL---AFLKAVRRVVDDWLA-LGATREEYLNIPPPTRLGVSQSS----KSLPS-ALNR 188
Query: 149 FTS---HQLLLIQL-----VVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEV 200
F HQL+ ++ + R F + E S + + I+ + K+ + V
Sbjct: 189 FQKRLVHQLIEVEYPSLVAISRPDFIQIIDYNEERERSVREQRVKKIQERTWKQTGFRWV 248
Query: 201 KDEQK-----------IDAEMSIKASIGFRHVID--------LLSSEKKLIVGHNCFLDI 241
+ M+ A++ ++ ++ L + ++VGHN F D+
Sbjct: 249 AEALAGGDLTNLHSGYFIGIMASSAAVEPKYPLNEFSDKLKQRLKEHRPVLVGHNIFSDL 308
Query: 242 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN----------SILQQRMKKSS 291
+ FFGPLP EEF S ++ FP ++DTK + N S L + + K +
Sbjct: 309 IYFCRCFFGPLPSKVEEFQSMAHELFPVLMDTKYMATHNCGSINPRSSLSELNENLAKKA 368
Query: 292 TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGC 351
A L Q L +K T + P S + HEAGYD+ +T
Sbjct: 369 IPKISAHDFLDRQFELMAKKT-TGIHPQ----------HSKYTTQKIDHEAGYDSLLTAQ 417
Query: 352 VFAQACSHL---GIDFKQQSSSEN 372
VF + + L G++ QQ S+++
Sbjct: 418 VFIRLSAQLREGGVEPLQQKSTKD 441
>gi|349605143|gb|AEQ00478.1| Poly(A)-specific ribonuclease PARN-like protein, partial [Equus
caballus]
Length = 376
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 37/261 (14%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 6 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK 65
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 333
++ + ++ F + +L L P +VE + S +
Sbjct: 66 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYD 109
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 393
S HEAGYDA++TG F ++LG F + A ++ + N L+L
Sbjct: 110 TASEQLHEAGYDAYITGLCFISMANYLGT-FLSPPKTHVSARSKLVEPFFNKLFLM---- 164
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 165 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 209
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
I + +D+T+ FV S+ E V
Sbjct: 210 IQISWIDDTSAFVSLSQPEQV 230
>gi|431904573|gb|ELK09955.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Pteropus alecto]
Length = 446
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 147/373 (39%), Gaps = 84/373 (22%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV- 66
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +++
Sbjct: 52 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIKQNIL 108
Query: 67 -NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPS 125
+ SLD KD++ + + R D E
Sbjct: 109 TGNWKVRSSLD-------------------------KDQIKVVINEVTRWLDLAEEGD-- 141
Query: 126 FNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVI 184
++L G Q +QLV+R+ D+ LR Q VI
Sbjct: 142 -----------------WMTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQGVI 177
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
V S+ + L D + E + ++ GF +L +K +VGHN +D+ H+
Sbjct: 178 VKKVSKQHRWYLENTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHL 237
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTK------------ILLNSNSILQQRMKKSST 292
+ KFF PLP + ++F +++ FP +IDTK +LL +L R+ + +
Sbjct: 238 HEKFFRPLPESYDQFKLNIHNLFPVLIDTKNVTKDIWKPFFAVLLKVAHLLLWRVHSAGS 297
Query: 293 SLSKAFS----VLCPQ------IALGSKSTHLAL--QPSVKVEVEVDDIRSSNWNSGVKH 340
+F VL P I G + + PS + + + +R W GV
Sbjct: 298 IPEPSFPLYLDVLAPYVNQVNLIRAGVPKINFSGPDHPSTRPPILILSVRK--W-PGVTE 354
Query: 341 EAGYDAFMTGCVF 353
+ Y F C F
Sbjct: 355 QQVYREFQNLCKF 367
>gi|403366643|gb|EJY83125.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Oxytricha trifallax]
Length = 554
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
IGF V++ + + KK +VGHN LDI +Y +F LPLT EFI + FP I DTK
Sbjct: 226 IGFSKVVEEMINAKKPLVGHNMMLDIMFLYQQFIDDLPLTLREFIVKFQEKFPAIYDTK- 284
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW- 334
+ S + ++ + L S ST + + K +E D N+
Sbjct: 285 ---------------AISQNMGVNLFNNKTDLNSMSTQILQKQKFKSYLEFDYDIGHNFT 329
Query: 335 ---NSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+ + HEAGYD+++TG VFA +L +
Sbjct: 330 KYQSKQMLHEAGYDSYLTGLVFASLIKYLEV 360
>gi|428182900|gb|EKX51759.1| hypothetical protein GUITHDRAFT_102366 [Guillardia theta CCMP2712]
Length = 654
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 137/324 (42%), Gaps = 62/324 (19%)
Query: 36 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 95
+ + Q DFN ++G+ Y E V + E + ++ R + D+
Sbjct: 221 IGQCQLDFNRWFYDGIPYTDALGEVYVRYDVMRQFGVEKSE----FRQSRPVAITREGDL 276
Query: 96 LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLL 155
+ R+ D L W+ G+ G+E E +F S N F +L
Sbjct: 277 VLLNRLMDGLDAWMNGV--GEQAGNE------------EYMF------PSANSFI--RLA 314
Query: 156 LIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKAS 215
L Q V K+ K + R + C+ V+ + S D+ + + +I +++
Sbjct: 315 LQQQVAMKYPKLVVMTR---KEPCNPLVMRLVCSRGDESWRKRTTEKAHQI-----LQSR 366
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GFRH+ ++LSS KK +V HN D+ + S F LP T EF S V++ FP + DTK
Sbjct: 367 LGFRHIFNVLSSSKKPMVVHNGLYDLMFLISHFECRLPNTLMEFKSIVHRSFPQVYDTKY 426
Query: 276 LLNSNSILQQRMKKSSTSL-----SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIR 330
L ++ +Q + + L S+ S C +++L S H
Sbjct: 427 L--AHVAFKQEDAQLTNLLDLYRRSRNASTAC-RVSLHSDFKH----------------- 466
Query: 331 SSNWNSGVKHEAGYDAFMTGCVFA 354
++S HE+G+DAF TGC+F
Sbjct: 467 ---YSSQKLHESGWDAFATGCIFG 487
>gi|302497187|ref|XP_003010594.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
gi|291174137|gb|EFE29954.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
Length = 573
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 301 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 360
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE-----VEVDDIRSSNWNSGVK 339
ST + S + P+ + S HL L S + +E SS S
Sbjct: 361 DASSALSTLMENLGSRVVPKFGILFHSMHLLLPSSRNLTFCANGIETHPDHSSYTVSTPI 420
Query: 340 HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL 373
HEAGYD+ MT +F + L ++ SS E L
Sbjct: 421 HEAGYDSLMTAQIFLKLAVQL---YETSSSREAL 451
>gi|298707724|emb|CBJ26041.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 705
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 127/289 (43%), Gaps = 25/289 (8%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
+ CQ +SMDFL+K+ FDF A GV +LSR +E+ + +E E+ ++ R
Sbjct: 100 YSCQASSMDFLSKHGFDFQAWASHGVPFLSRAEEEVVEGKLRRRWEREA-----TVAAER 154
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQ----PS---FNDSKQQFETIFF 138
+ + A D + + G + +G+ ++ P D+ ++ E +
Sbjct: 155 KEAVAAKAEAEAAAGEGDGGAAAVEGPVHTARDGTTIESLQEPEKGMVKDALKKVEALLA 214
Query: 139 K-------MRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESES 191
+ ++ ++ L Q L+ V D+ + G I + +
Sbjct: 215 ESSSGGEYVQKSVKLEPMNGRQRWLMYEFVGSSTADVKLSNLPGPAYARPMEIRTVCKDD 274
Query: 192 DKKMLMKEVK---DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
+K +E K DEQ ++ ++GFR V+D +S K ++ HN LD+ H + KF
Sbjct: 275 PEKHAEEEAKLRADEQARQL-GDLRRAVGFRRVVDEISKAGKPVICHNGLLDLLHTHDKF 333
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 297
GP+P+ ++ +++ P + D+K+++ + MK T L +A
Sbjct: 334 VGPIPVDMDDGTRALHSLLPRLFDSKVVM--AKAMAAGMKLPRTVLGEA 380
>gi|307167442|gb|EFN61018.1| Poly(A)-specific ribonuclease PARN [Camponotus floridanus]
Length = 571
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 42/276 (15%)
Query: 210 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 269
+ IK ++GF ++ + +K+IVGHN LD+ HI +FF PLP EF ++ FP
Sbjct: 247 LEIKQAVGFSSLLKKIVESEKIIVGHNMLLDLCHIVHQFFTPLPNDYIEFKILIHNLFPS 306
Query: 270 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI 329
++DTK++ S Q+ K+ TS S L + + SKS P +VE +
Sbjct: 307 LLDTKVICQS-----QQFKEHVTS-----SNLNVLLDIMSKS------PFSIPDVEPVEG 350
Query: 330 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 389
S + ++ HEAGYDA++TG F ++LG ++ ++ L + L +N L ++
Sbjct: 351 YSYSVSTEKSHEAGYDAYITGLCFIALSNYLGT-LQKSKNATVLVDSPLLNPFLNKLPIA 409
Query: 390 -WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVY 448
+ +NL + N ++H V FP K DI + S
Sbjct: 410 RLKDFPYVNLVGKD-------PNPSRDH---------VFHITFPKEWKHTDISQLFSPFG 453
Query: 449 G--------PTSVISVYHVDETAVFVQFSRAEMVSK 476
G ++ I +Y D+ +V +Q + + K
Sbjct: 454 GGYISWLSDTSAYIGLYRRDQASVVMQALAKQTICK 489
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 3 FFGR-HNFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQE 59
+F R +NF++F + PL+ A + F+CQT+S+ FLA FDFN G+ YLS +E
Sbjct: 79 YFQRSYNFYVFPK---PLNRHAPDCRFMCQTSSIAFLANQDFDFNKLFKYGIPYLSANEE 135
Query: 60 DKALKHV 66
+K +K +
Sbjct: 136 EKLVKRL 142
>gi|390350398|ref|XP_785661.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
[Strongylocentrotus purpuratus]
Length = 643
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 23/188 (12%)
Query: 176 ENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVG 234
E+ + ++V +E +KK L ++ K+ AE+ + + G V+ ++S K++VG
Sbjct: 245 EDKKGRFIVVRRVTEEEKKKLAQD-----KLQAELDEVDEASGICRVMKMISESGKVVVG 299
Query: 235 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSL 294
HN LD+ H+ +F GPLP T EF S V F ++DTK++ N
Sbjct: 300 HNMMLDVIHMMHQFTGPLPDTLLEFKSMVGCVFSRLLDTKVMAN---------------- 343
Query: 295 SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVF 353
++ F L P L + +P + + + ++ + K HEA YDA++TG F
Sbjct: 344 TQPFKELFPMTGLNDLMSKCDEEPFRRPHIVIPPSGFVDYTANQKFHEAAYDAYVTGVCF 403
Query: 354 AQACSHLG 361
A +++G
Sbjct: 404 ATMANYIG 411
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 5/50 (10%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLS 55
NF++F R P AA + FLCQ++S+DFL + FDFN ++G+ YL+
Sbjct: 130 NFYVFPR---PSTRAAPDQRFLCQSSSIDFLVSHGFDFNKVFYKGIGYLT 176
>gi|453085288|gb|EMF13331.1| CAF1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 563
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 148/378 (39%), Gaps = 91/378 (24%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F Q+ + +FL F+ N +GV YLSR E K+ + + +D+S + +K
Sbjct: 104 FSFQSGAAEFLLSVGFNMNRPFTDGVPYLSR-AEAKSAREKYAKRQDKSAVADIQIKPT- 161
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 145
+ F +R++ ++ W + E + + N S Q E+ F A
Sbjct: 162 -----EFEALAFLDRVRSEINTWRASKRLDAPEYLVISQTSNHSTQ--ESDF-----AEE 209
Query: 146 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 205
L+ F L+ +VR + +L + G + ++ Y + ++ +E + E++
Sbjct: 210 LSRFEKR---LVHQLVRAEYPELVTISKRG----AIQIVRYNKERENRLAAERERRMEEQ 262
Query: 206 IDAEMSIKASIGFRHVID-----------------------------------------L 224
I+ + GFR +I+ +
Sbjct: 263 INRQK------GFRWIIEALHGGNVSQIDLRECAKDPVTGEPIYADLDDYKRQFNYTQAI 316
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
+ +++VGHNCFLD+ +IY F G LP T EEF ++K FP I+DTK + N
Sbjct: 317 MRGNPRILVGHNCFLDLVYIYRTFIGALPDTVEEFQQKLHKLFPVIVDTKYMSTHN---- 372
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS--VKVEVEVDDIRSSNWNSGVKHEA 342
C I+ S +A Q S +E D N+ HEA
Sbjct: 373 -----------------CGDISPASSLEQIAEQLSDLETPPLETDPDHDKYENTEAFHEA 415
Query: 343 GYDAFMTGCVFAQACSHL 360
GYDA++T V + + L
Sbjct: 416 GYDAYLTAQVAVRLSAKL 433
>gi|115476612|ref|NP_001061902.1| Os08g0440200 [Oryza sativa Japonica Group]
gi|113623871|dbj|BAF23816.1| Os08g0440200 [Oryza sativa Japonica Group]
Length = 291
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL L AY F CQ++ + +A FDFN CI++G+SYLSR QE A + +
Sbjct: 99 YNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGFDFNMCIYDGISYLSRAQESLARERI 158
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLR--NRDEGSEVQP 124
+ ++++ + +I D +F R+K R+ W G + +GS V
Sbjct: 159 FIPH----------VRQLSSSPSTSIADSVFLTRIKSRIEHWRKGYTKPCKTADGSLV-- 206
Query: 125 SFNDSKQQ-FETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
N +Q + + RP+ S++ + Q+ L+ DL L V + ++ V
Sbjct: 207 --NTLRQLILGSESYGSRPSFSIDVCSDRQVQLVLEAANHISDDLVPLVVPDKAGTARAV 264
Query: 184 -IVYIESESDKKMLM 197
+++ S DK +L+
Sbjct: 265 RVIFTSSPEDKNLLL 279
>gi|345305348|ref|XP_001505796.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ornithorhynchus
anatinus]
Length = 392
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 113/269 (42%), Gaps = 37/269 (13%)
Query: 207 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 266
D + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 15 DLREELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPEDLNEFKEVTACV 74
Query: 267 FPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE- 325
FP ++DTK++ + ++ F + +L L P +VE
Sbjct: 75 FPRLLDTKLMAS----------------TQPFKEIINNTSLAELEKRLKATPFNPPKVES 118
Query: 326 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNL 385
+ S + S HEAGYDA++TG F + LG F A ++ + N
Sbjct: 119 AEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKIHVSARSKLIEPFFNK 177
Query: 386 LYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECIS 445
L+L I+++ N L +++H V+ FP K D+ + S
Sbjct: 178 LFLM----RIMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS 222
Query: 446 KVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+G I V +D+T+ FV S+ E V
Sbjct: 223 -AFG---NIQVSWIDDTSAFVSLSQPEQV 247
>gi|294934752|ref|XP_002781223.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
gi|239891558|gb|EER13018.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
Length = 672
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/482 (21%), Positives = 190/482 (39%), Gaps = 116/482 (24%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV--NSTYEDESLDSWHSLKE 83
F+ T+M+FL++ FD N CI GV +L EQE +A K V E + + K
Sbjct: 153 FMVSVTAMNFLSEAGFDLNECIKNGVGWLRPEQE-RAKKSVLEQRITEIRQMKEQATAKA 211
Query: 84 IRDT-----HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFF 138
+ + PD+ +K+ + +WL RN G+ N+ + + F
Sbjct: 212 ASEATPAPPEISPGPDLDVINNVKETIGDWL----RNDPHGT------NNLEVPMPSAF- 260
Query: 139 KMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMK 198
Q LL+ V+ + +L Y S S ++ML+K
Sbjct: 261 --------------QRLLMHSVIAAEYPNL-YSYSSRRAS------------DGERMLIK 293
Query: 199 EVKDEQKIDAEMSIKAS---IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLT 255
E++ + ++ + +G R ++D ++ K+IVGHNCFLD+ H + + LP T
Sbjct: 294 EIEGDDYTRHAGGLQQTTVQVGVRSLLD--AAADKVIVGHNCFLDVLHAQHRLYDALPST 351
Query: 256 AEEFISSVNKYFP-HIIDTKILLNSNSILQQRMKKSS-------------------TSLS 295
EF + F ++DTK + ++ L ++ TSL
Sbjct: 352 VSEFKDKWTERFKGGVLDTKYIAETHEFLSPLNPPATLKGLCDFMAHRHVQEHGDETSLG 411
Query: 296 KAFSVLCPQIALGSKSTHLALQPSVKV-----EVEVDDIRSSNWNSGV----------KH 340
+ + ++ ++QP + D +SS+ S + H
Sbjct: 412 HLLRLELVNLVSDGEADSTSIQPPHAARRLFHKEGSDAEQSSDGESTISLSEKPAVDMSH 471
Query: 341 EAGYDAFMTGCV----FAQACSHLGIDFKQQ----------SSSENLAHNEKLREHVNLL 386
+AGYDA MT V ++ CS GID QQ S + L+ ++ L +N +
Sbjct: 472 DAGYDAMMTALVCLLQLSEICSRKGIDMYQQLAFKDVSTTAMSKKALSISQLLPTSINRV 531
Query: 387 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 446
L + ++N++ + T + +++ Y + FP+ W++ + S
Sbjct: 532 RLVKSQPSVLNIAGRDET------DMQRHFY----------MTNFPTSWTKWEVMKVWSP 575
Query: 447 VY 448
V+
Sbjct: 576 VW 577
>gi|350403678|ref|XP_003486873.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Bombus impatiens]
Length = 653
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 90/365 (24%)
Query: 9 FFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNS 68
F++F R +PL + + ++DFL K+ FDFN + G+SY+ E H+
Sbjct: 89 FYLFPRS-IPLKNR--QLSWEVEAIDFLYKHGFDFNKFLVGGISYIDETDESLLRDHI-- 143
Query: 69 TYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFND 128
++++ SL + F + K ++ EW+ L N EV
Sbjct: 144 --AHGDVENYLSLLSYDEEENF--------KECKSKVYEWISNKLENAPLKLEV------ 187
Query: 129 SKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 188
+ P + + H+ L R ++ D+ ++ +N ++ I
Sbjct: 188 -----------ITPMVQ---YVLHKDL------RNNYNDIW---ITSDNKSIN--VMKIS 222
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
S + + K +E +D + GF V LLSS KK I+GHN LD+ ++ +F
Sbjct: 223 SNAQDDLFKKGNLEEALLDVYL------GFSKVFKLLSSSKKTIIGHNILLDLMFMHQQF 276
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKIL----------------LNSNSILQQRMKKSST 292
+ PLP + +EF S+++ FP I DTK L +NS +IL + T
Sbjct: 277 YKPLPDSYKEFKSNIHTLFPQIYDTKFLSFELRKLHSRDEVNWKINSLNILYEYF----T 332
Query: 293 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 352
+ + + P+I + +H + N+ H AG+D++ G V
Sbjct: 333 TQGRITTYNSPEIIFNEEFSHYI-------------VDKKNY-----HSAGWDSYFCGYV 374
Query: 353 FAQAC 357
F +
Sbjct: 375 FVKMA 379
>gi|340723245|ref|XP_003400002.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Bombus
terrestris]
Length = 561
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 98/373 (26%)
Query: 9 FFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNS 68
F++F R +PL + + +MDFL K+ FDFN + G+SY+ E L H+
Sbjct: 89 FYLFPRS-IPLKNRQLSW--EVEAMDFLYKHGFDFNKFLVGGISYIDEIDEKLMLDHITQ 145
Query: 69 TYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFND 128
++ L SL + F + K ++ EW+ N+ E + ++
Sbjct: 146 GDIEDCL----SLLSYDEEENF--------KECKSKVCEWIS----NKSENAPLK----- 184
Query: 129 SKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 188
ETI P ++Q V+ K ++ Y + + C ++ I
Sbjct: 185 ----LETI----TP-------------MVQYVLHKDLRN-NYNDIWTTSDCKSIDVMKIS 222
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
+ + K ++ +D +GF V LLSS KK+I+GHN LD+ ++ +F
Sbjct: 223 GNAQDDLSKKNNLEDVLLDF------YLGFSKVFKLLSSSKKMIIGHNILLDLMFMHQQF 276
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKIL------------------------LNSNSILQ 284
+ PLP + +EF S+++ FP I DTK L +NS +IL
Sbjct: 277 YKPLPDSYKEFKSNIHTLFPQIYDTKFLSFELRKLYSKDEGKEHXXRNVNWKINSLNILY 336
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
+ T+ + + P+I + +H + N+ H AG+
Sbjct: 337 EYF----TTQGRIITYNSPEIIFNEEFSHYI-------------VDKKNY-----HSAGW 374
Query: 345 DAFMTGCVFAQAC 357
D++ G +F +
Sbjct: 375 DSYFCGYIFVKMA 387
>gi|242009862|ref|XP_002425701.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
gi|212509602|gb|EEB12963.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
Length = 500
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 67/328 (20%)
Query: 28 CQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDT 87
CQ S+ FL KY FDFN I++G++Y+S + E++ K N + +++S + I++
Sbjct: 102 CQIESLKFLCKYNFDFNKAIYKGINYISEKNENELKKFFNQ--DKITIESLYFSDCIKEI 159
Query: 88 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 147
H ++ +W N E S++ I P SL
Sbjct: 160 H--------------SKIDKWR----LNTKEKSDM------------IIKISELPCKSLR 189
Query: 148 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 207
LI L + + F +L ++ +++ VI IE M KE+ E K
Sbjct: 190 -------YLILLEISQRFSNLQ-PTLTDDDAI---VIKKIE------MKRKEMNIEDKFF 232
Query: 208 AEMSI-KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 266
+ + + IGF +I + + KK I+ HNC LDI IY +F PLP ++F + + K
Sbjct: 233 LQKKLFQDIIGFSKIIKEMRNVKKPIIAHNCILDIMTIYQQFIKPLPSNYKQFKNDIKKL 292
Query: 267 FPHIIDTKILLNS-NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 325
FP I DTK L N+++ + SK+ S + G+ + P + +
Sbjct: 293 FPIIYDTKFLTRELNNLINNEIP------SKSLSDVYLYFKNGNVVPKILYMPKIIMNTI 346
Query: 326 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
D H+AG+D++ F
Sbjct: 347 CDKF----------HDAGFDSYCAAHCF 364
>gi|451993381|gb|EMD85855.1| hypothetical protein COCHEDRAFT_1187827 [Cochliobolus
heterostrophus C5]
gi|452000264|gb|EMD92725.1| hypothetical protein COCHEDRAFT_1172140 [Cochliobolus
heterostrophus C5]
Length = 620
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 145/388 (37%), Gaps = 109/388 (28%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
E Q+ + FL K FD GV YLSR++ +KA + + D +
Sbjct: 106 EIRFQSGACTFLLKNGFDLGLPFANGVQYLSRQEAEKARQM--------ACDRLEKKNPV 157
Query: 85 RDTHL--FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRP 142
D HL ++ + F R+++ +++W D + RP
Sbjct: 158 PDLHLKEGDVESLDFMRRVREAINKWKTTTSSGLDITTHTG--------------LPDRP 203
Query: 143 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 202
+ + T + L+ +VR F DL + G + C + + + E++ MK D
Sbjct: 204 KLPV--ITRFEKRLVHQLVRAEFPDLVTM---GRSECVRIIHLDPVREAENMQRMKNRVD 258
Query: 203 EQKIDAEMSIKASIGFRHV----------------------------------------I 222
E SI GFR + +
Sbjct: 259 E-------SILRQTGFRWIFEALVKGGNLSRTDLLFVARTTGMAPTADTDDTRTCFDRAM 311
Query: 223 DLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL------ 276
+ L + + ++VGHN F DI ++Y F G LP T ++F +++ FP IIDTK L
Sbjct: 312 ERLKTRQPVLVGHNMFTDIVYLYRTFVGELPDTLDDFQDVIHELFPKIIDTKYLATFAEG 371
Query: 277 -LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
LN++ LQ IA G L+ QP + D + +
Sbjct: 372 DLNASPTLQ-------------------DIAQG-----LSSQPLPDIITHADHPKYQDIE 407
Query: 336 SGVKHEAGYDAFMTGCVFAQACSHLGID 363
+ HEAGYD+ +T + + + LG++
Sbjct: 408 AF--HEAGYDSLLTATIMIKLAARLGVE 433
>gi|71043644|ref|NP_001020895.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
gi|68533833|gb|AAH99137.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
Length = 341
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 53/268 (19%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHSI 145
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+W + + + + D++++WL +EG +
Sbjct: 146 LR------GNWRVRSSLDKDQI---------KVVIDKVTQWLD----LAEEGDQ------ 180
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G + Q +QLV+R+ ++ L+ G VIV
Sbjct: 181 ----------------MTLPGISGFQAFEVQLVLRQALPNIWTVLKEEG-------VIVK 217
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D+ E + ++ GF +L +K +VGHN D+ H++
Sbjct: 218 KVSQPHRWYLEHASCDQVTCWKEQILLSARGFSVFFQMLVKAQKPLVGHNMMTDLLHLHE 277
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTK 274
KFF PLP + ++F +++ FP +IDTK
Sbjct: 278 KFFRPLPESYDQFKQNIHSLFPVLIDTK 305
>gi|395860984|ref|XP_003802777.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Otolemur
garnettii]
Length = 573
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GF VI +++ KL++GHN LD+ H +F+ PLP +F FP ++DTK
Sbjct: 202 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK 261
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 333
++ + ++ F + +L L P +VE + S +
Sbjct: 262 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFCSPKVESAEGFPSYD 305
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 393
S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 306 TASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPEIHVSARSKLIEPFFNKLFLM---- 360
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
++++ N L +++H V+ FP KA ++ +++
Sbjct: 361 RLMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKASNLY----RLFSAFGN 405
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
I + +D+T+ FV S+ E V
Sbjct: 406 IQISWIDDTSAFVSLSQPEQV 426
>gi|395860986|ref|XP_003802778.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Otolemur
garnettii]
Length = 588
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GF VI +++ KL++GHN LD+ H +F+ PLP +F FP ++DTK
Sbjct: 217 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK 276
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 333
++ + ++ F + +L L P +VE + S +
Sbjct: 277 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFCSPKVESAEGFPSYD 320
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 393
S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 321 TASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPEIHVSARSKLIEPFFNKLFLM---- 375
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
++++ N L +++H V+ FP KA ++ +++
Sbjct: 376 RLMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKASNLY----RLFSAFGN 420
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
I + +D+T+ FV S+ E V
Sbjct: 421 IQISWIDDTSAFVSLSQPEQV 441
>gi|330914662|ref|XP_003296730.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
gi|311331005|gb|EFQ95186.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
Length = 632
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 149/388 (38%), Gaps = 109/388 (28%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
E QT + FL FD A +GV YLSRE+ ++A + + D + I
Sbjct: 106 EVRFQTGACTFLLNNGFDLGAPFAKGVQYLSREEAERAKQM--------AWDRLENKNPI 157
Query: 85 RDTHLF--NIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRP 142
D L ++ + F R+++ + W G + D + +P
Sbjct: 158 PDLQLKKEDVESLDFMRRIREAIKTWKTGSSSSLDVTTHTG--------------LPDKP 203
Query: 143 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 202
AI + T + L+ +VR F +L + G + C + V + E+D ++ VK+
Sbjct: 204 AIPV--ITRFEKRLVHQLVRAEFPELVTI---GRSECVRIVDLDPVREADN---IRRVKN 255
Query: 203 EQKIDAEMSIKASIGFRHV----------------------------------------I 222
+ SI GFR + +
Sbjct: 256 RVR----ESIVRQTGFRWIFEALVKGGAVDRADPLYVARTTGMSTTGDMYDIRDRYDRAV 311
Query: 223 DLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL------ 276
+ L +++ ++VGHN F DI ++Y F G LP T + F ++++ FP IIDTK L
Sbjct: 312 ERLKTKQPVLVGHNMFTDIVYLYRTFVGQLPDTLQGFQATIHDLFPKIIDTKYLATHAEG 371
Query: 277 -LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
LN++ LQ IA+ L+ QP + D + +
Sbjct: 372 DLNASPTLQ-------------------DIAM-----RLSTQPLPHIITHADYPKYQ--D 405
Query: 336 SGVKHEAGYDAFMTGCVFAQACSHLGID 363
+ HEAGYD+ +T + + + LG +
Sbjct: 406 TEAFHEAGYDSLLTATIMIKLAAKLGAE 433
>gi|403373024|gb|EJY86423.1| hypothetical protein OXYTRI_13677 [Oxytricha trifallax]
Length = 681
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 90/387 (23%)
Query: 24 YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQ-----EDKALKHVNSTYEDESLDSW 78
+ F + T+ FL +Y++DFN +E V YLS + +D LK E++ DS
Sbjct: 120 HNFYVEQTAYQFLQQYKYDFNKLFYESVGYLSYQDYQQYLDDIKLKQYQLALEEQQFDSP 179
Query: 79 HSLKEIRDTHLFN-----------IP--------------DILFAERMKDRLSEWLGGLL 113
++H N IP DI FA+ + LL
Sbjct: 180 ECTT-YSNSHFLNLQTCLETVGRLIPKEDLETDPRNELKLDITFAK------FQLFHSLL 232
Query: 114 RNRDEGSEVQPSFNDSKQQFETI--------FFKMRPAI------SLNGFTSHQLLLIQL 159
RN + F K +E I + K++ S+ FTS+Q
Sbjct: 233 RN------IPKMFPKDKLDYELIVDDQQGDMYIKVKVTTDEILRKSIKPFTSNQ------ 280
Query: 160 VVRKHFKDLAYLRVSGENSCSQNVIVY----IESESDKKMLMKEVKDEQKIDAEMSIKAS 215
+ FK++ + + E +I+ + ES K++ K V D K AE S+ AS
Sbjct: 281 ---QEFKEILEIITNEE---KYEIILKNPQDFQIESLDKVVQK-VFDSIKSVAENSLGAS 333
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
I + +++ +K ++ N LD+ H+Y KF+ LP EF S+V+ +PHI D K
Sbjct: 334 I----IPLFIAALQKPLIFQNGMLDLLHLYDKFYQSLPDDILEFRSNVSVLYPHIYDNKT 389
Query: 276 LLNSNSILQQRMKKSS-TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW 334
L+N+ S ++ M+ ++ +LS ++ K + +Q +V++ E + N
Sbjct: 390 LMNNFSDIEATMRNNNGMNLSATYT-------RAMKDDYKFMQ-TVQIAPEFSEY---NL 438
Query: 335 NSGVKHEAGYDAFMTGCVFAQACSHLG 361
N HEAG+DA TG F + ++L
Sbjct: 439 NLDESHEAGFDALQTGVTFFKLATYLN 465
>gi|145503682|ref|XP_001437815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404972|emb|CAK70418.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 33/238 (13%)
Query: 198 KEVKDE--QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLT 255
K+ KD+ QK A+ + GF + + + + KK +VGHNCF D+ YS F P++
Sbjct: 228 KQAKDDERQKFKAD-RFQTKTGFYQIWECILNSKKYLVGHNCFADVMFCYSHFVQCPPIS 286
Query: 256 AEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLA 315
EEF + + +P I DTK ++ S L++ K TS S +A KS
Sbjct: 287 WEEFKEDIARNWPPIYDTKYIIQSAQPLEKIRGKLETSTS------IENLAEFIKSNMNY 340
Query: 316 LQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQ--SSSENL 373
+Q V++E + H AG+DA+MTG +F +L DF QQ + +N
Sbjct: 341 IQIDVELE------------QNLYHTAGFDAYMTGFIFI----NLTKDFTQQELQNQKNK 384
Query: 374 AHNEKLREHVNL-----LYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
+ K +NL + L+ I L +R + + N+R+ + K F+ IV
Sbjct: 385 LNQFKSNYSINLNSAEDIKLNQKYVIYIKLPEEDRRNLQIQKNQRQ-QFQKSAFDNIV 441
>gi|317147888|ref|XP_001822359.2| CAF1 family ribonuclease [Aspergillus oryzae RIB40]
Length = 561
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 153/379 (40%), Gaps = 93/379 (24%)
Query: 27 LC-QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
+C Q+ ++FL + +F N+ +GV YLSRE+E A+ Y S+ +KE
Sbjct: 104 MCFQSGVVEFLLENKFCLNSLYSDGVHYLSREEETIAIARAAERYGRTSVRKVIDVKETE 163
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 145
L F ++ + WL E E + ++ + K+ P++
Sbjct: 164 HDSL------AFLGAVRYLVDGWLA-----LGEAREAYLNIPPPRRYTASPKPKIMPSV- 211
Query: 146 LNGFTS---HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 202
LN F HQL+ ++ A+++V I+ + D++ K +++
Sbjct: 212 LNNFQKRLVHQLIEVEYPSLVTISRPAFIQV-------------IDYDEDRE---KAIQE 255
Query: 203 EQKIDAEMSIKASIGFRHVIDLLS------------------------------------ 226
++ A + IGFR +++ LS
Sbjct: 256 QRMARARERVWKQIGFRWIVEALSGGDLSHLDPFCFGSIMNSSTVVEPQVSLHGFSEKLQ 315
Query: 227 ----SEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSI 282
+ + ++VGHN F D+ ++Y FFGPLP EEF + V+ FP ++DTK + +
Sbjct: 316 QRLRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKYMATHDC- 374
Query: 283 LQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG-VKHE 341
+ P+ +L + +L + K+ V + S +NS + HE
Sbjct: 375 ----------------GSITPKSSLSEINDNLLHIKTPKISVHE---QHSKYNSQRIDHE 415
Query: 342 AGYDAFMTGCVFAQACSHL 360
AGYD+ +T +F + + L
Sbjct: 416 AGYDSLLTAQIFIKLSAQL 434
>gi|303314657|ref|XP_003067337.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107005|gb|EER25192.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037661|gb|EFW19598.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 583
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 143/373 (38%), Gaps = 92/373 (24%)
Query: 28 CQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDT 87
CQ++++D L + F +A +GV Y+SRE+E A V D L + +
Sbjct: 112 CQSSAIDLLLRSGFRMDAPFIDGVPYISREEEGMAKARVR--------DRQSRLAAMDNI 163
Query: 88 HL--FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 145
+ + + F E + +++W+ S + K+++ I + + +
Sbjct: 164 NFDSLDTESMAFLEEARRLINDWV---------------SKPNRKEEYVNIPSAEKRSAN 208
Query: 146 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 205
G ++Q LI +VR + DL S + + V I K+ L V++ +
Sbjct: 209 QPGINNYQKRLIHQLVRSEYPDLV--------SIGRAMFVQIVKYDKKREL--NVQEGRM 258
Query: 206 IDAEMSIKASIGFRHVIDLLS--------------------------------------S 227
I GFR +++ ++ S
Sbjct: 259 RQVRERIYNQTGFRWIVEAMTGGDLSRLSSDSVADSSRDPHGRKQKAFGHIDYLQAKLKS 318
Query: 228 EKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRM 287
++ ++VGHN F D+ + Y F G LP EEF+ +V++ FP I+DTK L +
Sbjct: 319 KRLVLVGHNIFTDLVNFYKCFIGGLPDKVEEFLGNVHELFPMIVDTKYLATHDC------ 372
Query: 288 KKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAF 347
S S A L +S P+ + + + + HEAGYD+
Sbjct: 373 --GSALPSSALEEL-------DESLRFRELPTFTTDAQ----HTKYVDEKPVHEAGYDSL 419
Query: 348 MTGCVFAQACSHL 360
MT VF + S L
Sbjct: 420 MTARVFLRLASQL 432
>gi|322802707|gb|EFZ22924.1| hypothetical protein SINV_00082 [Solenopsis invicta]
Length = 486
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 154/372 (41%), Gaps = 90/372 (24%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++ R + A +FL +++FL Y FDFN ++G+SYL E+ + +
Sbjct: 87 NFYLLPRS---IPSKARQFLWSIPALEFLTVYGFDFNKLAYQGISYLDEVDEEFLQQQIQ 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
++++ S KE D KD ++ L L DE
Sbjct: 144 KNTLLDNVEQSISYKEEED--------------FKDTATQILEWLKTASDE--------T 181
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
DS FK+ T +Q +RK F ++ SG N + ++ +
Sbjct: 182 DS--------FKIESC------TPTMQYFMQKTLRKRFSNI--WTFSGNNMIT---VIKV 222
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
ES ++ML +E E I + +++ IGF V LL + KK I+ HN LD ++ +
Sbjct: 223 PPES-RRMLEQE---EGSILENVLLESYIGFSKVFKLLVTLKKPIIAHNPLLDFMFMHQQ 278
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F+ PLP K+ N++L + + +T+ K + P + L
Sbjct: 279 FYKPLP----------QKW------------KNNVLSELVTHFTTNQGKRIPLGSPVVEL 316
Query: 308 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID--FK 365
+ + ++DDI S H AG+DA+ +G +F + +HL + ++
Sbjct: 317 ANSN-------------KLDDIAVSK----KYHTAGWDAYFSGYIFIR-LAHLFVSKRYE 358
Query: 366 QQSSSENLAHNE 377
Q SS++ H E
Sbjct: 359 QSISSKHFTHTE 370
>gi|425777876|gb|EKV16031.1| CAF1 family ribonuclease, putative [Penicillium digitatum Pd1]
gi|425780003|gb|EKV18026.1| CAF1 family ribonuclease, putative [Penicillium digitatum PHI26]
Length = 553
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 74/355 (20%)
Query: 32 SMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFN 91
SM+FL F + GV YLSRE E A++ Y + +K +D H
Sbjct: 110 SMEFLLANHFSIDHMCTFGVRYLSREDEKLAIRRATEKYHSRNAVQVADIK--KDDH--- 164
Query: 92 IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 151
+ F E ++ R++EWL + R+ + PS ++ P G ++
Sbjct: 165 -ESLEFLEAVRVRVNEWLEQGEKRREWLNIPPPSS-----------MQLIPGSIPTGLSN 212
Query: 152 HQLLLIQLVVRKHFKDLA------YLRVSGENSCSQNVIVYIESESDKKMLMKEVK---- 201
Q L+ ++ + +L ++++ + C++ E+ K+ MK V+
Sbjct: 213 MQKWLVHHLISDEYPNLTSRGASTFVQIEFRDPCNEQYTF----ETKLKVKMKRVRKQIG 268
Query: 202 -------------DEQKIDA---EMSI--KASIGFRHVID----LLSSEKKLIVGHNCFL 239
+E + DA M I + + G + + D L + ++VGHN F
Sbjct: 269 FRWIAEALVGGSLEELETDAFHPLMKIIEQPTFGVQQLSDKVKNRLQENRPVLVGHNMFC 328
Query: 240 DIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 299
D+ Y F GPLP T EF + ++ FP + DTK + +
Sbjct: 329 DLLFFYRCFLGPLPNTLVEFQTVIHDLFPMLADTKYMATHDC-----------------G 371
Query: 300 VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVF 353
L P +L +T LA S K+E+ D R S + + HEAGYD+ + F
Sbjct: 372 SLNPMSSLEELNTTLAGIGSPKIEI---DPRFSKYKFRTRTHEAGYDSMLAAMAF 423
>gi|148664947|gb|EDK97363.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Mus musculus]
Length = 426
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 76 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 135
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 333
++ + ++ F + +L L P +VE + S +
Sbjct: 136 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 179
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 393
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 180 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 234
Query: 394 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 453
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 235 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 279
Query: 454 ISVYHVDETAVFVQFSRAEMV 474
I + +D+T+ FV S+ E V
Sbjct: 280 IQISWIDDTSAFVSLSQPEQV 300
>gi|315042243|ref|XP_003170498.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
gi|311345532|gb|EFR04735.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
Length = 563
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 25/167 (14%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L S ++VGHN F D+ + Y F G LP E+F S+N+ FP +IDTK L + +L+
Sbjct: 315 LKSGPPVLVGHNLFTDLVNFYKCFIGDLPRRVEDFQQSINELFPLVIDTKYLATAGGVLR 374
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
+ S A S LC LG++ K E D S+ S HEAGY
Sbjct: 375 E--------ASSALSTLCEN--LGAREVP-------KFETHPD--HSAYTVSTPIHEAGY 415
Query: 345 DAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE--HVNLLYLS 389
D+ MT +F + L + + SSS N R+ V+L+ LS
Sbjct: 416 DSLMTAQIFLK----LAVQLYETSSSREALLNRANRDAAEVDLMDLS 458
>gi|313234528|emb|CBY10485.1| unnamed protein product [Oikopleura dioica]
Length = 442
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 22/232 (9%)
Query: 143 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIES-ESDKKMLMKEVK 201
+++L S+ LI + ++ F +SG N ++ V+ +++ ++++++ + EV
Sbjct: 71 SLNLPPCNSYIRRLIYMTLKPEFAGKTQF-ISGRNENNEPVVTILKTIKTEEEVKLAEVD 129
Query: 202 DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFF-GPLPLTAEEFI 260
E E ++K +GF H++ ++S K +V H LD+ FF LP T EEF
Sbjct: 130 AE-----EEAMKEKLGFLHILRVISVSKTPLVFHAGELDLYLTMKHFFCDELPETLEEFK 184
Query: 261 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ-IALGSKSTHLALQPS 319
S FP I DT +L++ N L+ + + SL + F + Q AL + + H+A
Sbjct: 185 SITTATFPQIFDT-LLMSRNEPLKSNFPEGN-SLGEIFKKVQDQPFALNAANIHIA---- 238
Query: 320 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSE 371
D R G HEAGYDA+MTG F +L + K ++ ++
Sbjct: 239 -------DGYRDYKAFGGQVHEAGYDAWMTGVAFIHMMGYLNLVSKTKTEAK 283
>gi|313213029|emb|CBY36908.1| unnamed protein product [Oikopleura dioica]
Length = 375
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 21/202 (10%)
Query: 173 VSGENSCSQNVIVYIES-ESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKL 231
+SG N ++ V+ +++ ++++++ + EV E E ++K +GF H++ ++S K
Sbjct: 100 ISGRNENNEPVVTILKTIKTEEEVKLAEVDAE-----EEAMKEKLGFLHILRVISVSKTP 154
Query: 232 IVGHNCFLDIAHIYSKFF-GPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKS 290
+V H LD+ FF LP T EEF S FP I DT +L++ N L+ +
Sbjct: 155 LVFHAGELDLYLTMKHFFCDELPETLEEFKSITTATFPQIFDT-LLMSRNEPLKSNFPEG 213
Query: 291 STSLSKAFSVLCPQ-IALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMT 349
+ SL + F + Q AL + + H+A D R G HEAGYDA+MT
Sbjct: 214 N-SLGEIFKKVQDQPFALNAANIHIA-----------DGYRDYKAFGGQVHEAGYDAWMT 261
Query: 350 GCVFAQACSHLGIDFKQQSSSE 371
G F +L + K ++ ++
Sbjct: 262 GVAFIHMMGYLNLVSKTKTEAK 283
>gi|118349638|ref|XP_001008100.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89289867|gb|EAR87855.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 578
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GF +++ + + K+ I+GH D+ + Y F LP T EF+ VNKYFP++IDTK+
Sbjct: 278 LGFSLIVEAIVNSKRPIIGHYMGYDLFYFYDHFIDVLPNTFVEFVEKVNKYFPYVIDTKV 337
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
L LQ ++KK L + + K + L +D + S +
Sbjct: 338 LARK---LQNKVKKLPLHLEGLYRAVAKDEKCLKKHHNTVL---------TNDPQFSKYT 385
Query: 336 -SGVKHEAGYDAFMTGCVFAQAC 357
G HEAG+D+++TG F C
Sbjct: 386 KEGQLHEAGFDSYITGASFIGMC 408
>gi|403340574|gb|EJY69575.1| Poly(A)-specific ribonuclease PARN [Oxytricha trifallax]
Length = 927
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 32/191 (16%)
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
+E +K L+K+ + E+ EM GF V++ L KK I+GHN DI ++Y++F
Sbjct: 328 TEEEKAKLLKQKEFERLFTYEM------GFSLVVEDLMKAKKPIIGHNMIYDICYLYNQF 381
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 308
LP +FI N+ FP+I DTK+L N+ T L K +
Sbjct: 382 IDKLPNEYSDFIKIWNEQFPYIYDTKVLSNAAEYF------GRTDLGKVY---------- 425
Query: 309 SKSTHLALQPSVKVEVEVD-DIRS--SNWNSGVK----HEAGYDAFMTGCVFAQACSHLG 361
K T+ P +K + ++ D++ N++ HEA YDA+MTG F +
Sbjct: 426 EKCTN---DPKLKSQFRINFDLQGGFGNYDGAAMLAHYHEAAYDAYMTGVAFVNIVKYKE 482
Query: 362 IDFKQQSSSEN 372
++ ++ EN
Sbjct: 483 VERPKEEKKEN 493
>gi|168019851|ref|XP_001762457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686190|gb|EDQ72580.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 123/299 (41%), Gaps = 41/299 (13%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+ F R G+ F CQ +S+DFL ++ FDFN I+ G+ Y+
Sbjct: 99 NFYTFPRSN---GGSDVRFTCQASSLDFLREHGFDFNKFIYSGIPYV------------- 142
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIP-DILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
T E LD ++ RD + D F E+ + + W+ V
Sbjct: 143 -TLEQLKLDKKSEARDSRDPIVLTKEEDRNFVEQQLETVRTWVE---------RTVAREA 192
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
+ + + P+ S +Q L + F +L LR G S +
Sbjct: 193 SSESSDSDPATLVLEPSNSYLRAALYQHLEQEFGKSDFFVEL--LRTPGARKSSLKLTRA 250
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+ ++ + E + ++ S GF +V+ L++ K IVGHN LD+A++Y
Sbjct: 251 TSA------VVAAQESEVAAKRQKQLERSKGFANVMQCLTTCNKPIVGHNMLLDLAYLYQ 304
Query: 247 KFFGPLPLTAEEFISSVNKYFP-HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F G LP T +EF + V FP + DTK L +L +TSL + + L P+
Sbjct: 305 QFIGTLPPTLDEFRAHVKLLFPGGVYDTKYLAEFFPVLL-----PATSLEELHTSLAPK 358
>gi|19112846|ref|NP_596054.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676190|sp|O94386.1|YGS9_SCHPO RecName: Full=Uncharacterized protein C29A10.09c
gi|4007797|emb|CAA22437.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe]
Length = 427
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 44/335 (13%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
+F + +S+ FL + FDFN + EGV YLSR +E + VN D D S+ +
Sbjct: 100 DFCSEASSIKFLIQQGFDFNKQLTEGVPYLSRIEERNLIDKVNERSTD---DLTSSILDA 156
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFK-MRPA 143
D +IL R +++ WL L S + SK T + +R A
Sbjct: 157 CDE------EILVDAR--NQIKNWLSSEL-----------SHSTSKYLNITTSNRFIRKA 197
Query: 144 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRV--SGENSCSQNVIVYIESESDKKMLMKEVK 201
I L+ I+ K + +L+V + ENS +Q S + K L +++
Sbjct: 198 I-------QSLVKIEFPTLKSYPKRTFLQVRKAIENSTTQC------SATSKSELKEDIA 244
Query: 202 DEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
+Q I ++ IK ++G RH+ D + +KK +V HN D+ +++S F G +P T EF
Sbjct: 245 SDQLILNNLNLIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYLFSLFEGKVPETILEFS 304
Query: 261 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS-VLCPQIALGSKSTHLALQPS 319
F I DTK+L + LQ T L S + P + S S + +
Sbjct: 305 ELCLSSFKSIYDTKLLYLKSDDLQHVSDGIPTDLLSLVSKISLPPVPSNSSSQRSNVSLN 364
Query: 320 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
+E + S HEAG D++ T +F
Sbjct: 365 SLIECPYKSMMSRKR----PHEAGKDSYDTALLFV 395
>gi|169619537|ref|XP_001803181.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
gi|111058647|gb|EAT79767.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
Length = 606
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/392 (21%), Positives = 150/392 (38%), Gaps = 101/392 (25%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
E Q+ ++ FL FD GV YLSR++ ++ + E+++ + LK+
Sbjct: 106 EISLQSGAITFLLGCGFDMAKPFTHGVEYLSRQEAEQIKQATADRLENKNPPADMQLKDT 165
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
++ + F R+++ + +W G ++S K +PAI
Sbjct: 166 ------DVDSLDFMRRVREAIIKWKAGT--------------SESLAITTHTGLKEQPAI 205
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
+ + L+ +VR + +L + G + C + + E+D +K EQ
Sbjct: 206 PT--ISRFEKRLVHQLVRAEYPELVSM---GRSECVRIINFDPLREADNNRRIKSRVKEQ 260
Query: 205 KIDAEMSIKASIGFRHV-----------------------------------IDLLSSEK 229
+ GFR V ++ L + +
Sbjct: 261 -------VNRQSGFRWVFEALAQGNLDHAEPLYVAGNITADSHNVRDRYDRAVERLRTRQ 313
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSI 282
++VGHN F DI ++Y F G LP T + F +++K FP I+DTK L LN++
Sbjct: 314 PVLVGHNMFTDIVYLYRTFVGELPDTLQGFRDAIHKEFPKIVDTKYLATHAEGDLNASPT 373
Query: 283 LQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEA 342
LQ +IA G L QP + D S HEA
Sbjct: 374 LQ-------------------EIAEG-----LTKQPLPDIVTHTD--HSKYQEKEAFHEA 407
Query: 343 GYDAFMTGCVFAQACSHLGIDFKQQSSSENLA 374
GYD+ +T + + + LG + +++ S N+A
Sbjct: 408 GYDSLLTATIMIRLAAKLGAEHEKKHPS-NIA 438
>gi|401408295|ref|XP_003883596.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
gi|325118013|emb|CBZ53564.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
Length = 751
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 117/278 (42%), Gaps = 49/278 (17%)
Query: 17 LPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLD 76
LP +G ++ T ++ FL + FDFN + +GV +L ++E
Sbjct: 140 LPREGRLFQ--ASTGTLMFLRENGFDFNQWLDQGVPFLRAQEE----------------- 180
Query: 77 SWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFET- 135
KE R I D+ + + R G +R+ E S + + N +
Sbjct: 181 -----KEKRQALQVRIDDLEHLIKHRSR-----GATMRDAQESSSLLDTTNAEDRDLAAS 230
Query: 136 --------IFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
+ R + L + Q LL+ +V F L L V + V+
Sbjct: 231 ARASIQAWLASSTREPLHLPVESPLQRLLLHSLVASEFPSLYSLSV---KLGDRRVLAIY 287
Query: 188 ESESD--KKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
+SE + ++ L +D QK++ E+ G R ++D +S K L++GHNCF D HI+
Sbjct: 288 QSEEEVYEEQLRGLREDIQKVE-ELR-----GVRQLLDDISDHKLLVIGHNCFYDFLHIF 341
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSIL 283
+ LP + EF ++ + FP DTK++ S+ +L
Sbjct: 342 QTLYADLPQSVSEFKTAWTQLFPSTFDTKLIAESHDVL 379
>gi|440639009|gb|ELR08928.1| hypothetical protein GMDG_03595 [Geomyces destructans 20631-21]
Length = 576
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 146/380 (38%), Gaps = 103/380 (27%)
Query: 30 TTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK------HVNSTYEDESLDSWHSLKE 83
++SM FL K FD A +G+SY+SR+++ +A + + NST D + +
Sbjct: 116 SSSMHFLRKNCFDIGAVFTKGISYISRKEQTQARQAFLERQNRNSTIPDIKIGPGDQVT- 174
Query: 84 IRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
+ F + +L EW P D + F+ +
Sbjct: 175 -----------LDFYRNARRQLLEW-------------TDPKNKDVRDAMG--FYNVSVP 208
Query: 144 ISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 202
L+G+ Q L+ +VR FK+ A+L + + ++S + K+ +V
Sbjct: 209 GGLSGY---QRRLVYQLVRTEFKEYRAFLPRKNADFVQ---VEKMDSAKEAKIAASKV-- 260
Query: 203 EQKIDAEMSIKASIGFRHVIDLLS------------------------------------ 226
I E + +GFR++ + L+
Sbjct: 261 ---IANEAQLSKQVGFRYIFEALAGGDLSAIAPNWFCVNAAGQSAFIDTSLKKLELSSLA 317
Query: 227 ----SEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSI 282
++ +++VGHN F D+ +Y F G LP T EF ++ FP +IDTK + + +
Sbjct: 318 KALAAKSRVLVGHNLFTDLIFLYHTFIGILPPTVTEFQEKIHALFPMVIDTKYMATRDKL 377
Query: 283 LQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEA 342
+ R S L + KS H+ P + + E S N HEA
Sbjct: 378 IDARQSSSLQDLHQDV-----------KSQHI---PEICLPEEF----RSYQNRHQLHEA 419
Query: 343 GYDAFMTGCVFAQACSHLGI 362
GYD+++T +F + + L +
Sbjct: 420 GYDSYLTAQIFLKLAAKLDV 439
>gi|242761628|ref|XP_002340217.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
gi|218723413|gb|EED22830.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
Length = 536
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 149/369 (40%), Gaps = 81/369 (21%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F + ++ FLAK F+ GV YLS+++ D+ L + W + K R
Sbjct: 109 FGLSSNAIHFLAKIGFNLGETCENGVPYLSKKEVDEILDEARRFHGSR----WQTAK--R 162
Query: 86 DTHLFNIPDI---LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRP 142
+ + DI F ++ + EWL D + P
Sbjct: 163 AQIILSDDDIESAAFLAGIRKDIEEWLNADWDKPD--------------------YLHVP 202
Query: 143 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 202
A++ + FT + LI +V + L +R SGE S ++ Y E++ KK K +
Sbjct: 203 ALNGHAFTRFEKRLIHQLVETEYPSLTSIR-SGE---SIKIVKYDEAKEHKKYEGKMSRV 258
Query: 203 EQKI--------------DAEMSIKASIGFR------------HVIDLLSSEKK-----L 231
+Q++ ++S S F H +++ K
Sbjct: 259 QQRLIDHRGFAWVIEALAGGDLSQMTSQMFEPLVIGEGPDAEYHKTQIITKLKARNGQIA 318
Query: 232 IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSS 291
IVGHN F+D+ +++ F+G LP E+F +++ FP +IDTK + + M ++
Sbjct: 319 IVGHNLFMDVTYLWQCFYGDLPDRVEDFAQLLHEKFPMLIDTKYIFTHDC---GDMNPAA 375
Query: 292 TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGC 351
T L K + C +IA +P +K + +D++ + HEAGYD+ +T
Sbjct: 376 T-LEK-IAEACKRIA----------KPQIK--LVMDNLHTRYRKKACPHEAGYDSLLTAQ 421
Query: 352 VFAQACSHL 360
VF + L
Sbjct: 422 VFIKQAVQL 430
>gi|326480283|gb|EGE04293.1| CAF1 family ribonuclease [Trichophyton equinum CBS 127.97]
Length = 585
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 317 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 376
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS----SNWN-SGVK 339
ST + S P+ + S S + + +DI + S++N S
Sbjct: 377 DASSALSTLMENLGSRAVPKSGILSHFYASVSTFSSETNIGANDIETHPDHSSYNVSTPM 436
Query: 340 HEAGYDAFMTGCVFAQACSHL 360
HEAGYD+ MT +F + L
Sbjct: 437 HEAGYDSLMTAQIFLKLAVQL 457
>gi|397598041|gb|EJK57139.1| hypothetical protein THAOC_22852 [Thalassiosira oceanica]
Length = 742
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 166/397 (41%), Gaps = 75/397 (18%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF++F + E +++ FL DFN EGVSY + +Q + ++
Sbjct: 159 YNFYLFPAS------STREMTLSPSTIQFLLGNNMDFNKVFAEGVSYTTVDQAEAMMEKH 212
Query: 67 NSTY---EDE-SLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWL------------- 109
Y EDE + ++ H+ + L + DI F R+ L EW+
Sbjct: 213 FEKYGRKEDEKAKEASHTPSKRGGVKLSRVEDIAFCARVIAGLREWIDSDIQPGAYPNPA 272
Query: 110 ----GGLL---RNRDEGSEVQ-PSFND--SKQQFETIFFKMRPAISLN--------GFTS 151
GL+ R+ DEG+ V P N + +E+I + P++ L G S
Sbjct: 273 GAVTAGLVHENRDADEGTAVVLPPCNAFLRRALYESIQGEY-PSLILERADQGQNAGPRS 331
Query: 152 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV---IVY--IESESDKKMLMKEVKDEQKI 206
+Q+ +++L + + LR +V I++ I + K+ KE
Sbjct: 332 NQIRVMRLSPEEKERRDTRLRREAWEKILGDVGFTILFQAISDACNGKVFSKEQTKSFLN 391
Query: 207 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGP-LPLTAEEFISSVNK 265
I +D S K ++ HN +D+ + + P LP + EE +++
Sbjct: 392 GTSPDIS--------VDGKGSNKIPLIIHNGLMDLMFLITHCHDPTLPESFEETKATIRS 443
Query: 266 YFPHIIDTKILLN--SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 323
YFP I+DTKIL S+SI+ K + L F+V+ + + S T A P++
Sbjct: 444 YFPRIVDTKILAGEYSDSII----KGGKSDLGSLFNVITSEREM-SWITFKA--PTI--- 493
Query: 324 VEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
S+ +S HEA YDA+MTGCVF C +
Sbjct: 494 -------SNGESSQQAHEAAYDAYMTGCVFNGLCDRI 523
>gi|326473493|gb|EGD97502.1| CAF1 family ribonuclease [Trichophyton tonsurans CBS 112818]
Length = 585
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 317 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 376
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS----SNWN-SGVK 339
ST + S P+ + S S + + +DI + S++N S
Sbjct: 377 DASSALSTLMENLGSRAVPKSGILSHFHASVSTFSSETNIGANDIETHPDHSSYNVSTPM 436
Query: 340 HEAGYDAFMTGCVFAQACSHL 360
HEAGYD+ MT +F + L
Sbjct: 437 HEAGYDSLMTAQIFLKLAVQL 457
>gi|396479569|ref|XP_003840786.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
gi|312217359|emb|CBX97307.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
Length = 630
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 143/377 (37%), Gaps = 89/377 (23%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
E Q+ + FL + F+ A GV YLSR++ +A + E ++ LKE
Sbjct: 106 EIRFQSGACSFLLSHGFNLGAPFASGVQYLSRQEAARARQMAWDRIEKKNPVEDMQLKEE 165
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
++ + F R+++ +++W +S T + A
Sbjct: 166 ------HVDSLDFVRRVREAITQW----------------KTTNSDCLEVTTHTGLPKAP 203
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
+ + + L+ +VR F D + G + C + + +E E+D MK EQ
Sbjct: 204 HVQAISRFEKRLVHQLVRAEFPDQVSI---GRHDCIRIIDHDVEREADNVRRMKSRVKEQ 260
Query: 205 KID-------------------AEM-------SIKASIG-----FRHVIDLLSSEKKLIV 233
I AE S+ A + + ++ L + + ++V
Sbjct: 261 IIRQTGFRWIFEALVKGGDIDRAEPLYLSRTSSLTADVSGLKDRYDRAVERLKTRQPVLV 320
Query: 234 GHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSILQQR 286
GHN F DI ++Y F G LP T + F +++ FP I+DTK L LN++ LQ+
Sbjct: 321 GHNMFTDIVYLYRTFVGELPDTLQGFREVIHELFPKIVDTKYLATYTEGDLNASPTLQE- 379
Query: 287 MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDA 346
IA G +L E+ S + HEAGYD+
Sbjct: 380 ------------------IAQGLSHQYLP-------EIVTHPDHSKYEGAEAFHEAGYDS 414
Query: 347 FMTGCVFAQACSHLGID 363
+T + + + LG +
Sbjct: 415 LLTATIMIRLAARLGAE 431
>gi|307203543|gb|EFN82576.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Harpegnathos saltator]
Length = 355
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 54/249 (21%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFFI + + + L +SM+FLA+++FDFN H + Y+ EQE + L+
Sbjct: 87 NFFILPKS---IPSKNRQVLWDVSSMEFLAEHEFDFNKLAHHSIPYID-EQEKEILQQ-- 140
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDIL-FAER--MKDRLSEWLGGLLRNRDEGSEVQP 124
+ ++T ++NI ++ F E +K+ ++E L N DE +
Sbjct: 141 --------------QIQQNTLIYNIKQVISFTEEDTLKNTINEVAKWLATNIDETNS--- 183
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
FK++ + + H+ L RKHF ++ L SG S +
Sbjct: 184 -------------FKIKTSSPNLQYLMHKEL------RKHFPNIWTL--SGNESVT---- 218
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
I+ E + + ++ E +E I +++ +GF V +LL + KK I+GHN LD+ +
Sbjct: 219 -VIKVEPNTREILSE--EEDLILENALLESYMGFSKVFNLLVTLKKPIIGHNVLLDLMFM 275
Query: 245 YSKFFGPLP 253
Y +F+ PLP
Sbjct: 276 YQQFYKPLP 284
>gi|189207410|ref|XP_001940039.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976132|gb|EDU42758.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 634
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 146/384 (38%), Gaps = 105/384 (27%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
E QT + FL FD A +GV YLSRE+ ++A + ++++ LKE
Sbjct: 106 EVRFQTGACTFLLNNGFDLGAPFAKGVQYLSREEAERAKQMAWDRLDNKNPIPDLQLKE- 164
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
++ + F R+++ + W + D + +PA+
Sbjct: 165 -----EDVESLDFMRRIREAIKTWKTSKALHLDVTTHTG--------------LPDKPAM 205
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
+ T + L+ +VR F +L + G + C + V + E+D M+ +K+
Sbjct: 206 PV--ITRFEKRLVHQLVRAEFPELVTI---GRSECVRIVDLDPVREADN---MRRIKNRV 257
Query: 205 KIDAEMSIKASIGFRHV----------------------------------------IDL 224
+ SI GFR V ++
Sbjct: 258 R----ESIVRQTGFRWVFEALVKGGAVDRADLLYVARTTGMPMTADMYAIRDRYDRAVER 313
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------L 277
L +++ ++VGHN F DI ++Y F G LP T + F +++ FP IIDTK L L
Sbjct: 314 LKTKQPVLVGHNMFTDIVYLYRTFVGQLPDTLQGFQDAIHGLFPKIIDTKYLATHAEGDL 373
Query: 278 NSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG 337
N++ LQ IA+ L QP + D + ++
Sbjct: 374 NASPTLQ-------------------DIAM-----RLNTQPLPHIITHADYPKYQ--DTE 407
Query: 338 VKHEAGYDAFMTGCVFAQACSHLG 361
HEAGYD+ +T + + + LG
Sbjct: 408 AFHEAGYDSLLTATIMIKLAAKLG 431
>gi|258566912|ref|XP_002584200.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905646|gb|EEP80047.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 487
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 146/371 (39%), Gaps = 96/371 (25%)
Query: 32 SMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFN 91
++D L K F A G+ Y+SRE+E A V D L + D + N
Sbjct: 20 AIDVLLKSGFCMEAPFKVGLRYISREEEQAAKARVR--------DRKTRLAAMDDINHDN 71
Query: 92 I--PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 149
+ + F + + +W+G + K + I + + S +G
Sbjct: 72 LDAESVAFLAETRRAIDDWVG---------------IPNKKVNYVNIPGPEKRSASPSGI 116
Query: 150 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESD--KKMLMKEVK------ 201
++Q L+ +VR + DL VS S VI Y + + ++ M+ V+
Sbjct: 117 NNYQKRLVHQLVRSEYPDL----VSIGKSTFIQVIRYDQQRENSVQEARMRRVREHIFHQ 172
Query: 202 -------------DEQKIDAEMSIKASIG-----------FRHVIDLLSSEKKLIVGHNC 237
D ++ + + S G + ++ L S+ ++VGHN
Sbjct: 173 TGFRWIVEAMVGGDLSRLPPQTFVDPSCGSPRREEKILENYDYMQAKLRSKHLILVGHNL 232
Query: 238 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN-------SNSILQQRMKKS 290
F D+ + Y FFG LP EEF++++++ FP I+DTK L +S+L++ K
Sbjct: 233 FTDLVNFYKCFFGSLPDKVEEFLATIHEIFPTIVDTKYLATHDCGSDFPSSMLEELDDK- 291
Query: 291 STSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMT 349
L +K +P++ V D N+N HEAGYD+ MT
Sbjct: 292 ----------------LNAKE-----RPTITV-----DPDHPNYNDQKPLHEAGYDSLMT 325
Query: 350 GCVFAQACSHL 360
VF + + L
Sbjct: 326 ARVFLRLAAQL 336
>gi|149042528|gb|EDL96165.1| rCG49798 [Rattus norvegicus]
Length = 605
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 228 EKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRM 287
+ KL+VGHN LD+ H +F+ PLP+ EF FP ++DTK++ +
Sbjct: 254 QGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTKLMAS--------- 304
Query: 288 KKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDA 346
++ F + +L L P +VE + S + S HEAGYDA
Sbjct: 305 -------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDA 357
Query: 347 FMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSE 406
++TG F ++LG + + A ++ + N L+L ++++ N
Sbjct: 358 YITGLCFISMANYLGSLLSPPKTCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGP 412
Query: 407 SLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFV 466
L +++H V+ FP K D+ + S +G I + +D+T+ FV
Sbjct: 413 DL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFV 457
Query: 467 QFSRAEMV 474
S+ E V
Sbjct: 458 SLSQPEQV 465
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQE 59
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E
Sbjct: 89 NFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEE 139
>gi|407410179|gb|EKF32714.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 487
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GFR + L+ KK I+GHN +LDI ++ PLP E+F V++ FP I DTK
Sbjct: 211 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMFHMHEAPLPARYEDFKKQVHELFPCIYDTKT 270
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
L S +++ +KK L + C S P E +
Sbjct: 271 L--SKNMIFSALKK-CYHLDNLYRECCKINKESKNSIVFRFPPGFHFYDE-----RCIGS 322
Query: 336 SGVKHEAGYDAFMTGCVFA 354
G HEAGYDA+MTG VFA
Sbjct: 323 EGKAHEAGYDAYMTGIVFA 341
>gi|380479005|emb|CCF43280.1| hypothetical protein CH063_03036 [Colletotrichum higginsianum]
Length = 632
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 213 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 272
+ + + + D L + +IVGHN F+D+ +Y+ F LP T ++F++ +++ FP+I+D
Sbjct: 402 RVADALKTIEDQLKRSRPVIVGHNQFMDLLFLYNTFVDDLPATLDDFLAKIHELFPYILD 461
Query: 273 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 332
TK++ ++ + + L + + A+ H+ P
Sbjct: 462 TKLM-----AIKHQAIEGEDPLVDLYDRFSDRKAM----PHIDWPPGYGYG--------- 503
Query: 333 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL---AHNEKLREHVNLLY 387
SG H+AG+D++MTG VF + L + ENL +E++ + + L Y
Sbjct: 504 --RSGTAHQAGFDSYMTGTVFLRLACRL--------AYENLTGGGGDEQVGQRMKLFY 551
>gi|242005773|ref|XP_002423735.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
gi|212506937|gb|EEB10997.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
Length = 550
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 120/280 (42%), Gaps = 44/280 (15%)
Query: 197 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 256
+K +++E + + I GF VI L+ KKLI+GH LDI +F PLP +
Sbjct: 232 IKNLREENFSNEKKKILNESGFTRVIKLMIDSKKLIIGHYLLLDILFTIKQFLSPLPNSY 291
Query: 257 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 316
EF ++ FP IIDTK + +++ + +K +S P + L
Sbjct: 292 SEFKELLHFLFPKIIDTKYMASTHDF--KGLKDTS----------LPNVV--EYFNTLGK 337
Query: 317 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSS--ENLA 374
P V D+ + HEA YDA+MTG F LGI +S ENL
Sbjct: 338 IPDVSTN---DNEQGYTLTEKKFHEAAYDAYMTGLAF------LGISNSLESLKVFENLP 388
Query: 375 HNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 434
+ L+ ++N L + +I ++ G + E + V FP
Sbjct: 389 DSSFLKPYLNKLKIQRI-FDIHCMNIGGKDEEPDRTG--------------VYHLSFP-- 431
Query: 435 LKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
K W RE IS+++ IS+ +++T+ FV+ + ++
Sbjct: 432 -KEWK-REHISELFVNCGYISISWINDTSAFVKVNEEHLI 469
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKAL 63
NF+I+ P + F CQ+ S++FLAK FDFN G+ YL + K L
Sbjct: 88 NFYIY-----PSTHSDVNFTCQSKSIEFLAKNGFDFNTLFLHGIPYLKESEMAKLL 138
>gi|212529996|ref|XP_002145155.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|212529998|ref|XP_002145156.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074553|gb|EEA28640.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074554|gb|EEA28641.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
Length = 561
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 151/368 (41%), Gaps = 70/368 (19%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALK--HVNSTYEDESLDSWHSLKE 83
F ++++ FL K FD NA EGV YLS ++E K L+ H +++ E+ + +
Sbjct: 107 FGFSSSAVQFLLKSGFDLNAPFQEGVHYLSTKEEKKVLEDAHQHNSGRSETGTTAQMVLS 166
Query: 84 IRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
RD + F ++ + WL + R E V PS + + + RPA
Sbjct: 167 KRDRE-----SVAFLADVRKDIEAWLS-VGEGRREYLNV-PSRDATSRN-------GRPA 212
Query: 144 I-SLNGFTSHQLLLIQLVVRKHFKDLA------YLRVSGENSCSQNVIVYIESESDKKML 196
SLN F Q L+ +V + L Y+R+ + ++ I + +K L
Sbjct: 213 TTSLNRF---QKRLVHQLVETEYPSLTSIGCPDYIRIVKYDKEREDRIRREKLNRVEKRL 269
Query: 197 MKEVKDEQKIDA---------------------EMSIKASIGFRHVIDLLSSEKKLI--V 233
++ I+A E A+ ++ ID L S+ I V
Sbjct: 270 LELRGFRWVIEALTGGDLSQLTPQAFHPLVGVVEEEEDAAAYWKRTIDALKSKNGRIPLV 329
Query: 234 GHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTS 293
GHN F+D+ +++ F+G LP EEF +++ FP +IDTK + ++ S
Sbjct: 330 GHNLFMDVVYLWQCFYGYLPDQVEEFARLLHEKFPMLIDTKYIF-THDCGDMNPVASLDD 388
Query: 294 LSKAFS-VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 352
++KA + + P+I + SK T N HEAGYD+ +T
Sbjct: 389 IAKACNHITKPEIIINSKHTRYQ-------------------NKTCPHEAGYDSLLTAQN 429
Query: 353 FAQACSHL 360
F + L
Sbjct: 430 FIKQAVQL 437
>gi|407849616|gb|EKG04306.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 487
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GFR + L+ KK I+GHN +LDI + PLP E+F V + FP I DTK
Sbjct: 211 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMLHMHEAPLPTMYEDFKKQVYELFPCIYDTKT 270
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
L S S+ ++ K L + C S P E +
Sbjct: 271 L--SKSMFFSKLNK-CYHLDDLYKECCKINKESKDSIVFRFPPGFHFYDE-----KCIGS 322
Query: 336 SGVKHEAGYDAFMTGCVFAQACSHL----GIDFKQ 366
G HEAGYDA+MTG VFA L GI+FK+
Sbjct: 323 EGKAHEAGYDAYMTGIVFAIMKDVLKNGDGIEFKK 357
>gi|345569256|gb|EGX52124.1| hypothetical protein AOL_s00043g514 [Arthrobotrys oligospora ATCC
24927]
Length = 474
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 68/355 (19%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQED--KALKH 65
NFF+ E L +L +++DF K FDFN G YL ++E K LK
Sbjct: 105 NFFVAPHVEKRLFRYDRAYLFSASAIDFHLKNGFDFNKLFSRGCLYLGHQEEAHIKGLKR 164
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPS 125
+ + ++ KE D+ E ++ ++ W+
Sbjct: 165 QRDEADKKEIEP----KE---------EDLPMLEDVRSQIIGWI---------------- 195
Query: 126 FNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIV 185
++ E+ F G+ +Q +I +R+ F D Y + E +V
Sbjct: 196 -----KRRESDPFDFLNIQRDAGYNGYQRRIISQFIRREFPD--YNGIWYERHLQ---VV 245
Query: 186 YIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 245
+ ++ +++K D QK+ +K G RH+ID + KK ++GHN F D+ +++
Sbjct: 246 PYNGDRERNIVLKREDDFQKV-----LKVQRGVRHLIDKIMELKKPLIGHNLFTDLVYMH 300
Query: 246 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 305
+ F G P +F + + F I+DTK L ++ + K+S S S P+
Sbjct: 301 NMFIGDPPEDINDFRRFLQQSFGLIVDTKFL----ALHCKETNKNSASSS------LPE- 349
Query: 306 ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
LG + +H+ +DD N+ H AGYDA+ T F + + L
Sbjct: 350 -LGYRLSHMTYP-------HIDDFPV---NTEQNHVAGYDAWCTARSFVKLSAIL 393
>gi|407394491|gb|EKF26952.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 590
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 144/336 (42%), Gaps = 41/336 (12%)
Query: 31 TSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSL--KEIRDTH 88
+S+ FL ++ DF + +++G++Y QE+ K Y + LDS H+ +E+
Sbjct: 116 SSLAFLRRHDMDFQSWVYQGMAYCDANQEEALRKRHEEKYRE--LDSIHNEGNQEVEGVS 173
Query: 89 LFNIPD-------ILFAERMKDRLSEWL-GGLLRNRDEGS---EVQPSFNDSKQQFETIF 137
L + + A+ +R+ L +RN + + EV + + + +F
Sbjct: 174 LLTEEEKKWYDNAVTLAQAFSERIQAALEKAKVRNAGQTAGMVEVSAALDLIQSGGREVF 233
Query: 138 FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLM 197
+ G ++ + L + V +HF L+ L + + ++ + E ++
Sbjct: 234 LPPQ-----RGKSAREAL--ERHVEQHFHKLS-LTFRRQGAVYMGILRAVFPEERNRL-- 283
Query: 198 KEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 257
++++++ E + +GFR V L +K VGHNC D+ + + GPLP +
Sbjct: 284 ---REKEQVFREGELMNMLGFRLVFKALVESRKPCVGHNCLADLLFLLASLDGPLPESLP 340
Query: 258 EFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ 317
EF +N+ FP + DTK + + +Q+ ++ S L + S + H+ L
Sbjct: 341 EFKRRMNELFPIVFDTKYIAS-----RQQFFPLERFGARYLSGLFGEYGFRSANAHVTLP 395
Query: 318 -------PSVKVEVEVDDIRSSNWNSGVKHEAGYDA 346
P E + ++N G HEAGYDA
Sbjct: 396 LGFESYDPLAVGGGERHNSSAAN-AGGPTHEAGYDA 430
>gi|260810923|ref|XP_002600172.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
gi|229285458|gb|EEN56184.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
Length = 441
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 19/191 (9%)
Query: 208 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 267
A+ ++ +GF HV L+ +K +VGHN +D+ +Y K + PLP ++F ++ F
Sbjct: 177 ADRALDYMLGFSHVFRTLTQTRKPVVGHNMLMDLMLLYGKMYKPLPEKYDQFKRDIHVLF 236
Query: 268 PHIIDTK-ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ-PSVKVEVE 325
P I DTK I L + S+ L + + L K + L P+V E
Sbjct: 237 PCIYDTKHIAAELKKPLAEFGVLQSSILQELYDALN-----SHKGRFMVLHSPAVVPAAE 291
Query: 326 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL----GIDFKQQSSSENLAHNEKLR- 380
D N HEAGYD++M G VF + SHL GI +Q + E +R
Sbjct: 292 CDRYT----NESHPHEAGYDSYMAGYVFIRM-SHLQTMQGISAQQPVPPRFRRYLEVMRR 346
Query: 381 --EHVNLLYLS 389
+ VN++ S
Sbjct: 347 FQDKVNIIRAS 357
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 30 TTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNST 69
+S +FL + FDFN ++EGV YL ++QE KH+ T
Sbjct: 52 ASSFEFLCDHNFDFNEFVYEGVPYLDQDQEKHLRKHLEQT 91
>gi|392869996|gb|EAS28542.2| CAF1 family ribonuclease [Coccidioides immitis RS]
Length = 587
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 142/377 (37%), Gaps = 96/377 (25%)
Query: 28 CQTT----SMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKE 83
CQ++ ++D L + F +A +GV Y+SRE+E A V D L
Sbjct: 112 CQSSDRHQAIDLLLRSGFRMDAPFIDGVPYISREEEGMAKARVR--------DRQTRLAA 163
Query: 84 IRDTHL--FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMR 141
+ + + + + F E + +++W+ S + K+++ I +
Sbjct: 164 MDNINFDSLDTESMAFLEEARRLINDWV---------------SKPNRKEEYVNIPSAEK 208
Query: 142 PAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVK 201
+ + G ++Q LI +VR + DL S + + V I K+ L V+
Sbjct: 209 RSANQPGINNYQKRLIHQLVRSDYPDLV--------SIGRAMFVQIVKYDKKREL--NVQ 258
Query: 202 DEQKIDAEMSIKASIGFRHVIDL------------------------------------- 224
+ + I GFR +++
Sbjct: 259 EGRMRQVRERIYNQTGFRWIVEAITGGDLSRLSSDAFADSSRDPHGRKQKAFGHIDYLQA 318
Query: 225 -LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSIL 283
L S++ ++VGHN F D+ + Y F G LP EEF+ +V++ FP I+DTK L +
Sbjct: 319 KLKSKRLVLVGHNIFTDLVNFYKCFIGGLPDKVEEFLGNVHELFPMIVDTKYLATHDC-- 376
Query: 284 QQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAG 343
S S A L +S P+ + + + + HEAG
Sbjct: 377 ------GSALPSSALEEL-------DESLRFRELPTFTTDAQ----HTKYVDEKPVHEAG 419
Query: 344 YDAFMTGCVFAQACSHL 360
YD+ MT VF + S L
Sbjct: 420 YDSLMTARVFLRLVSQL 436
>gi|327300148|ref|XP_003234767.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
gi|326463661|gb|EGD89114.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
Length = 560
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/384 (22%), Positives = 156/384 (40%), Gaps = 64/384 (16%)
Query: 18 PLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS 77
P G ++ Q++++ FL + F + +GV Y+S ++E A+ +D+S S
Sbjct: 100 PRLGVERKWSFQSSALAFLMSHGFRVESIFTDGVPYISMKEEQDAMDRARKD-KDKSSRS 158
Query: 78 WHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIF 137
+ + H F +++ + EW+ ++ + + N K T
Sbjct: 159 LINFDTLAPDH------AQFIRQVRHSIREWI-------EKPAPKEAYLNIPKPAGMTAA 205
Query: 138 FKMRPAISLNGFTS---HQLL--------------LIQLVVRKHFKDLAYLR-------- 172
+K+ + L+ + HQ++ IQ++ ++ +L+
Sbjct: 206 YKL--PLELDNYQKRLVHQIVQSEYPGYVSIGKKSFIQILPYDKMRENVFLQKKLQRTRC 263
Query: 173 -VSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKL 231
++G+ S + + SE K L + + A K + + + L S +
Sbjct: 264 NIAGQKGFSWVIEAMMGSELSKLDLRLLWRPDGIFTAAEGSKLTKESEALREKLRSGPPV 323
Query: 232 IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSS 291
+VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + +L+
Sbjct: 324 LVGHNLFTDLVNFYKCFIGDLPSRVEDFQQTINELFPLVIDTKYMATIGGVLR------- 376
Query: 292 TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGC 351
S A S L LGS++ K E D SS S HEAGYD+ MT
Sbjct: 377 -DASSALSTLMEN--LGSRAVP-------KFETHPD--HSSYTVSTPVHEAGYDSLMTAQ 424
Query: 352 VFAQACSHLGIDFKQQSSSENLAH 375
+F + L ++ SS E L +
Sbjct: 425 IFLKLAVKL---YETSSSREALVN 445
>gi|325185583|emb|CCA20066.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 656
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 65/385 (16%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F+ Q + ++ ++ FDFN I G+SY+S K L E++ +D+ S
Sbjct: 132 FMLQAMCIQYIHEHGFDFNDWIENGISYISSSAMVKLLG------ENDVVDTPQSALVAL 185
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDS-----KQQFETIFFKM 140
D H E D++ + L +V PS ++S ++ E F
Sbjct: 186 DRH---------TEAFLDKMDALIIKLREQLATKEQVDPSESESESDEEQKVSEIKTFLK 236
Query: 141 RPAISLNGFTSHQLL-------------LIQLVVRKHFKDLAYL------RVSGENSCS- 180
P G ++ ++ L+ + K + D L +G++S +
Sbjct: 237 NPMDDSGGIEAYGMVACLTPPLGWYRSRLLTHHIEKTYGDTVLLLECVSDNETGKSSHAS 296
Query: 181 --QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA----SIGFRHVIDLLSSEKKLIVG 234
+ + + I + K+ ++ V Q I+ ++ I+A IGF ++D + IVG
Sbjct: 297 RFKEIRLRIILTTSNKVKIRVVSAHQSIENDL-IEAHNLERIGFTTIMDWILESNTPIVG 355
Query: 235 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH----------IIDTKILLNS--NSI 282
HN LD+ + Y KF+ PLP T EF +S+ ++ I DTK +L + +
Sbjct: 356 HNLLLDLLYCYEKFYQPLPNTCAEFSASLLQWMKRDKDDSTLQNVIYDTKDMLTTVQEEL 415
Query: 283 LQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK--- 339
Q + TSL AF ++ G + L V+ + I S + +
Sbjct: 416 DQFADRLECTSLPHAFEIVSKHPFYGPTIQSITLTDFVQRFPLSEAINSIKFTAKSTPKI 475
Query: 340 ---HEAGYDAFMTGCVFAQACSHLG 361
H+AG+DAF TG +F + C LG
Sbjct: 476 CGAHQAGHDAFATGYLFTRLCCALG 500
>gi|71663249|ref|XP_818620.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70883881|gb|EAN96769.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 517
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GFR + L+ KK I+GHN +LDI + PLP E+F V++ FP I DTK
Sbjct: 241 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMLHMHEAPLPTMYEDFKKQVHELFPCIYDTKT 300
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
L S ++ ++ K L + C S P E +
Sbjct: 301 L--SKTMFFSKLNK-CYHLDDLYKECCKINKESKDSIVFRFPPGFHFYDE-----KCLGS 352
Query: 336 SGVKHEAGYDAFMTGCVFA 354
G HEAGYDA+MTG VFA
Sbjct: 353 EGKAHEAGYDAYMTGIVFA 371
>gi|297723221|ref|NP_001173974.1| Os04g0467400 [Oryza sativa Japonica Group]
gi|255675538|dbj|BAH92702.1| Os04g0467400 [Oryza sativa Japonica Group]
Length = 207
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHE 49
HNFFIF R E D + +EFLCQTTS+DFLAKYQFDFN C E
Sbjct: 132 HNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQFDFNTCFRE 174
>gi|349806239|gb|AEQ18592.1| putative protein polyA-specific ribonuclease (deadenylation
nuclease) [Hymenochirus curtipes]
Length = 188
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 198 KEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 257
+ ++ +Q D E ++ ++GF +I +S+ KL+VGHN LD+ H +FF LP
Sbjct: 1 ERIEQQQAKDRE-ELEDAVGFSRIIQAISTSGKLVVGHNMLLDVMHTIHQFFCQLPDDLN 59
Query: 258 EFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ 317
EF N FP ++DTK++ ++N F + +L L
Sbjct: 60 EFKEVTNCVFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKDS 103
Query: 318 PSVKVEVE-VDDIRSSNWNSGVKHEAGYD 345
P +V+ D +S N S HEAGYD
Sbjct: 104 PFKPPKVDGADGFQSHNTASEQLHEAGYD 132
>gi|358374410|dbj|GAA91002.1| CAF1 family ribonuclease [Aspergillus kawachii IFO 4308]
Length = 869
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 219 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 278
R V L + ++VGHN F D+ + FFGPLP E+F + +K FP ++DTK +
Sbjct: 314 RRVKQRLQKNRPILVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHKMFPVLMDTKYMAT 373
Query: 279 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-G 337
N + P+ +L + LA QP+ + + + + +N+
Sbjct: 374 HNC-----------------GSINPRSSLQEINDSLAAQPTPAISIHP---QFTKYNTRA 413
Query: 338 VKHEAGYDAFMTGCVFAQACSHL 360
+ HEAG+D+ +T VF + + L
Sbjct: 414 IDHEAGFDSLLTAQVFIKLSAQL 436
>gi|255956365|ref|XP_002568935.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590646|emb|CAP96841.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 542
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 137/352 (38%), Gaps = 67/352 (19%)
Query: 32 SMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFN 91
SM+FL F + GV YLSRE+E A+K E S H + ++ D +
Sbjct: 96 SMEFLLANHFSIDHMCTFGVRYLSREEEKLAIKRAT-----EKCLSRHPV-QVADIKKDD 149
Query: 92 IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 151
+ F E ++ ++EWL RD + PS ++ P G +S
Sbjct: 150 HESLEFLEAVRVSINEWLAQGENRRDWLNIPPPSS-----------VQLIPGPIPTGLSS 198
Query: 152 HQLLLIQLVVRKHFKDLAY----------LRVSGENSCSQNVIVYIESESDKKML----- 196
Q LI +V + +L R G + + ++ E +K +
Sbjct: 199 MQKWLIHHLVSDEYPNLTSRGASTFVQIEFRDPGNEQYTFESKLKVKKERVRKHIGFRWI 258
Query: 197 --------MKEVKDEQKIDAEMSI--KASIGFRHVID----LLSSEKKLIVGHNCFLDIA 242
++E++ + M I + + G + + D L + ++VGHN F D+
Sbjct: 259 AEALVGGSLEELEPDAFHPLMMRIIEQPTFGIQQLADKVKNRLKESRPVLVGHNMFCDLL 318
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
Y F GPLP T EF + ++ FP + DTK + + L
Sbjct: 319 FFYRCFLGPLPDTLAEFQTVIHDLFPVLADTKYMATHDC-----------------GSLN 361
Query: 303 PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVF 353
P +L +T LA S K+E+ D R + + HEAGYD+ + F
Sbjct: 362 PMSSLEELNTTLAGIESPKIEI---DPRFGKYKFRKRTHEAGYDSMLAAMAF 410
>gi|308504273|ref|XP_003114320.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
gi|308261705|gb|EFP05658.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
Length = 565
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 147 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI 206
+GF+S ++ ++ + F + + + +NS + NV + E KM E K++ ++
Sbjct: 199 SGFSSVEICMVIHELTNAFPQFVF-KFNSQNS-TLNVAMLPE-----KMTETENKNQTRL 251
Query: 207 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 266
S + G +++ +K+IVGHN LD ++Y FF PLP F +
Sbjct: 252 RCSESFE---GISAILEAAMMMRKVIVGHNSLLDAMYLYHYFFAPLPQNYNAFKRQFHGL 308
Query: 267 FPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV-- 324
FP IIDTK++ S I + S L F G++ ++ + P ++ +
Sbjct: 309 FPKIIDTKLIAQSLRIELPGVGDSLEKLGDYF---------GTEKSNKTVPPELRGYIGP 359
Query: 325 ---EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL 373
+DD S N V H AG+D+++TG VF + +H I+ K +E+L
Sbjct: 360 WMNPLDD-DSEN----VYHNAGFDSYITGEVFLK-LAHTYINRKNNLKNESL 405
>gi|429861252|gb|ELA35948.1| caf1 family ribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 619
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L ++ IVGHN F D+ IY FF LP + EF +++ + FPHIIDTK++ ++ ++
Sbjct: 391 LQLQRPPIVGHNQFFDLLFIYQTFFDDLPASCGEFFANIYELFPHIIDTKLMAIADQAIE 450
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
L+ F + +PS+ + R +N HEAGY
Sbjct: 451 -----GEDPLADIFDRFIGDVC----------RPSIGWDPAHGYSRRAN-----AHEAGY 490
Query: 345 DAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 387
D+FMT + + L + + +N+ E + + LY
Sbjct: 491 DSFMTAVILLRLAHKLA-----RRTLDNVDEGESWDKKMRRLY 528
>gi|71649930|ref|XP_813674.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878580|gb|EAN91823.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 517
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GFR + L+ KK I+GHN +LDI + PLP E+F V++ FP I DTK
Sbjct: 241 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMLHMHEAPLPARYEDFKKQVHELFPCIYDTKT 300
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
L S ++ ++ K L + C +I SK +A Q + S
Sbjct: 301 L--SKTMFFSKLNK-CYHLDDLYKECC-KINKESKDL-IAFQFPPGFHFYDEKCIGS--- 352
Query: 336 SGVKHEAGYDAFMTGCVFA 354
G HEAGYDA+MTG VFA
Sbjct: 353 EGKAHEAGYDAYMTGIVFA 371
>gi|413922374|gb|AFW62306.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
gi|413922375|gb|AFW62307.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
Length = 244
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL L +Y F CQ + +A FDFN CI++G+SYLSR QE A + +
Sbjct: 97 YNFHLFPRDELQLGMPSYSFSCQPCYLSTIANDGFDFNMCIYDGISYLSRVQESLAREKI 156
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEW 108
+ + L S ++ ++ D +F R+K R+ W
Sbjct: 157 FTPRPHQLLSSPNT----------SVADSVFMNRIKSRIVNW 188
>gi|357621648|gb|EHJ73417.1| hypothetical protein KGM_05205 [Danaus plexippus]
Length = 394
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 46/251 (18%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIR 85
F Q +++ FL + FD+N ++G+ Y+SR +E H K+++
Sbjct: 102 FTFQASAIRFLCLHNFDYNKFTYDGLPYMSRSEEA------------------HIKKQLK 143
Query: 86 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 145
+ L N +++ A M D + + SEV +S +TI+ + I
Sbjct: 144 EKTLLN--NLIQAMEMNDER--------KLQSYCSEVAKWLVNSTD--DTIYLDIDNPI- 190
Query: 146 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 205
++ +R F ++ G S V++Y + D E
Sbjct: 191 -------MRYIVHCELRNRFPEVLTTDSLGN---SHKVLIYRNGDVDGATSASMSTLEGN 240
Query: 206 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 265
+ I +GF +I+LL+ KK I+GHN +LD ++S+F GPLP F ++N
Sbjct: 241 L-----ITYVLGFSQIIELLAEYKKPIIGHNMYLDTLLLHSQFIGPLPKRYSAFKKNINN 295
Query: 266 YFPHIIDTKIL 276
FP++ DTK +
Sbjct: 296 LFPNMYDTKYI 306
>gi|317038388|ref|XP_001402264.2| CAF1 family ribonuclease [Aspergillus niger CBS 513.88]
Length = 559
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 151/372 (40%), Gaps = 82/372 (22%)
Query: 29 QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTH 88
Q+++++FL + +F GV+YLSR++E + + V E + S + + H
Sbjct: 107 QSSAVEFLLENKFSMEDLYKNGVTYLSRDEESRIMARVMQRNERTTARSSLDVGD----H 162
Query: 89 LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 148
+ + F + ++ + EWL L + R++ + P + M LN
Sbjct: 163 EYE--SLAFLKDVRRLVDEWLA-LGKAREDYLNIPPPRPITGPAPSNHPKSM--PTDLNR 217
Query: 149 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 208
F Q L+ ++ + L + G I I+ + ++ K V+D++
Sbjct: 218 F---QKRLVHQLIEVEYPSLVTVSRPG-------FIQIIDYDEQRE---KAVRDQRVKWV 264
Query: 209 EMSIKASIGFRHV-----------------IDLLSSEKK--------------------- 230
+ I GFR + I+L+SS K+
Sbjct: 265 QERIWKQTGFRWIAEALAGGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNR 324
Query: 231 -LIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 289
++VGHN F D+ + FFGPLP E+F + ++ FP ++DTK + N
Sbjct: 325 PVLVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNC-------- 376
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-GVKHEAGYDAFM 348
+ P+ +L + LA QP+ + + + + +N+ + HEAG+D+ +
Sbjct: 377 ---------GSINPRSSLQEINDSLAKQPTPAISIHP---QFTKYNTRAIDHEAGFDSLL 424
Query: 349 TGCVFAQACSHL 360
T VF + + L
Sbjct: 425 TAQVFIKLSAQL 436
>gi|350631915|gb|EHA20284.1| hypothetical protein ASPNIDRAFT_121560 [Aspergillus niger ATCC
1015]
Length = 559
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 151/372 (40%), Gaps = 82/372 (22%)
Query: 29 QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTH 88
Q+++++FL + +F GV+YLSR++E + + V E + S + + H
Sbjct: 107 QSSAVEFLLENKFSMEDLYKNGVTYLSRDEESRIMARVMQRNERTTARSSLDVGD----H 162
Query: 89 LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 148
+ + F + ++ + EWL L + R++ + P + M LN
Sbjct: 163 EYE--SLAFLKDVRRLVDEWLA-LGKAREDYLNIPPPRPITGPAPSNHPKSM--PTDLNR 217
Query: 149 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 208
F Q L+ ++ + L + G I I+ + ++ K V+D++
Sbjct: 218 F---QKRLVHQLIEVEYPSLVTVSRPG-------FIQIIDYDEQRE---KAVRDQRVKWV 264
Query: 209 EMSIKASIGFRHV-----------------IDLLSSEKK--------------------- 230
+ I GFR + I+L+SS K+
Sbjct: 265 QERIWKQTGFRWIAEALAGGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNR 324
Query: 231 -LIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 289
++VGHN F D+ + FFGPLP E+F + ++ FP ++DTK + N
Sbjct: 325 PVLVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNC-------- 376
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-GVKHEAGYDAFM 348
+ P+ +L + LA QP+ + + + + +N+ + HEAG+D+ +
Sbjct: 377 ---------GSINPRSSLQEINDSLAKQPTPAISIHP---QFTKYNTRAIDHEAGFDSLL 424
Query: 349 TGCVFAQACSHL 360
T VF + + L
Sbjct: 425 TAQVFIKLSAQL 436
>gi|296816132|ref|XP_002848403.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238841428|gb|EEQ31090.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 545
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L + ++VGHN F D+ + Y F G LP E+F ++++ FP ++DTK + +L+
Sbjct: 298 LRAGPPVLVGHNLFTDLVNFYKCFIGDLPGRVEDFQQAIHELFPVVVDTKYMATHGGVLR 357
Query: 285 QRMKKSSTSLSKAFSVLCP-QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAG 343
AFS L LG++ E D S+ + +HEAG
Sbjct: 358 D-----------AFSALSKLNETLGAREVP---------NFETDSEHSAYIANAPQHEAG 397
Query: 344 YDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 375
YD+ +T VF + L F+ +S E L H
Sbjct: 398 YDSLITAQVFLKLAVQL---FETSTSREALIH 426
>gi|407929029|gb|EKG21868.1| Ribonuclease CAF1 [Macrophomina phaseolina MS6]
Length = 667
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L + +VGHN F DI ++Y F GPLP T EEF ++++FP ++DTK + N
Sbjct: 308 LQRRRPALVGHNLFTDIIYLYRTFIGPLPPTLEEFRVLIHQHFPLVVDTKYMATHNC--- 364
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
+ P+ +L + H L+ K + S + HEAGY
Sbjct: 365 --------------GDINPKSSL--EEIHNKLRAQAKPLIVTHAAHSKYHVAEPLHEAGY 408
Query: 345 DAFMTGCVFAQACSHLGID 363
D+FMT + + + L D
Sbjct: 409 DSFMTALIMIRLSTKLEED 427
>gi|238502431|ref|XP_002382449.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
gi|220691259|gb|EED47607.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
Length = 375
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 219 RHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
R+++ L L + + ++VGHN F D+ ++Y FFGPLP EEF + V+ FP ++DTK
Sbjct: 119 RYLVKLQQRLRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKY 178
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL--ALQPSVKVEVEVDDIRSSN 333
+ + + P+ +L + +L P + E I S
Sbjct: 179 MATHDC-----------------GSITPKSSLSEINDNLLHIKTPKISAENASPYIHSKY 221
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ + HEAGYD+ +T +F + + L
Sbjct: 222 NSQRIDHEAGYDSLLTAQIFIKLSAQL 248
>gi|348561225|ref|XP_003466413.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cavia porcellus]
Length = 535
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 145/377 (38%), Gaps = 107/377 (28%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NFF+F LD EF Q +S+ FL +Y F++N + +G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDT---EFSFQASSVQFLNQYGFNYNKFLKKGIPYMNEEQEKK-IKHSI 145
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK---DRLSEWLGGLLRNRDEGSEVQP 124
T +W ++R T L +++K D ++ WL L + D+
Sbjct: 146 LT------GNW----KVRST--------LDKDQVKVVIDEVTRWLD-LAKEGDQ------ 180
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNV 183
I+L G + +QLV+R+ ++ LR Q V
Sbjct: 181 -------------------ITLPGMAGFRAFEVQLVLRQALPNIWTVLR-------DQEV 214
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
IV S + L D E + ++ GF +L +K +VGHN +D+ H
Sbjct: 215 IVKKVSLQHRWYLEHASGDRDSCWKEEILLSARGFSVFFQMLVQAQKPLVGHNMMMDLLH 274
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
++ KFF PLP P ++ + +++ L P
Sbjct: 275 LHEKFFRPLP-------------GPEVMGSH---------PDSEGRTTVELQAG-----P 307
Query: 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWN--------------------SGVKHEAG 343
+ L P V +EV ++ SSN N + HEAG
Sbjct: 308 LVHLSPVWVQELHFPRVSNLLEVYEVLSSNLNPTKDSAPVIVHGNKCEKYAKTKYPHEAG 367
Query: 344 YDAFMTGCVFAQACSHL 360
YDAF+ G V + +HL
Sbjct: 368 YDAFLCGSVLLKV-AHL 383
>gi|341887681|gb|EGT43616.1| hypothetical protein CAEBREN_31154 [Caenorhabditis brenneri]
Length = 549
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 155/370 (41%), Gaps = 64/370 (17%)
Query: 11 IFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSR---EQEDKALKHVN 67
IFQR P ++ +S+ FL +FD N EGV Y +R + DKALK
Sbjct: 87 IFQRFGDPDTKVSF------SSLRFLRNNKFDLNQVFSEGVEYCTRAEFQNFDKALK--- 137
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
ED +L S KEI+ I E L +L + +E N
Sbjct: 138 ---EDTALRSVS--KEIQ----LQI--------------ELLKVMLHEKCYIAETDMITN 174
Query: 128 DSKQQFETIFFKM--RPAISL---NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN 182
+++ + + F + +SL G ++ +I + K F + E +C+
Sbjct: 175 STEEPMQEVRFSLIGNKPVSLKITQGLCCVEICMIIHELTKAFPQFTF--KMDEKNCALK 232
Query: 183 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIA 242
V S+K E ++ + S +A G +++ + +K+IVGHN LD
Sbjct: 233 V-------SNKPEFTTEAENINQTRVRCS-EAFEGISAILEAVMMMRKVIVGHNSLLDTM 284
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 302
++Y FF LP + F + FP +IDTKIL +L+ + SL +
Sbjct: 285 YLYHYFFERLPEKYQTFKRKFSALFPKVIDTKIL---AQVLRLELPGVGDSLERLGDY-- 339
Query: 303 PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
G++ ++ + P ++ + + + V H AG+D+++TG VF + +H I
Sbjct: 340 ----FGTEKSNKTVPPELRGYIGPWMNPLDDDSENVYHNAGFDSYITGEVFLK-LAHTYI 394
Query: 363 ----DFKQQS 368
DFK +S
Sbjct: 395 NRKNDFKNES 404
>gi|239607406|gb|EEQ84393.1| CAF1 family ribonuclease [Ajellomyces dermatitidis ER-3]
Length = 533
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/376 (20%), Positives = 149/376 (39%), Gaps = 73/376 (19%)
Query: 24 YEFLCQTT-------SMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLD 76
++F C + +++FL K F A EG+ YLSR +E A+ + ES +
Sbjct: 15 WQFHCSSNDVFLNEQAVEFLIKNGFRMEAPFVEGLPYLSRLEEQLAMTKLA-----ESEN 69
Query: 77 SWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETI 136
S + +I+ ++ + F +++ + W+ + +++E +
Sbjct: 70 STAKIADIKPENM-DPESHTFVAKVRGLIDSWIDEI-GDKEEYLNIPEPGGLENGNMAGP 127
Query: 137 FFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLA-------------------YLRVSGEN 177
R A++ S+Q L+ +VR + L Y+RV
Sbjct: 128 LGSWRFALN-----SYQKRLVHQLVRAEYPSLVSISRKTFVQIIPYNKQREEYIRVDKWR 182
Query: 178 SCSQNVIVYIE-------------SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDL 224
+ + ++ + S D ++ + + D +DAE S R
Sbjct: 183 TLRERIVQQMGFRWIVEGMVGGDLSAMDPRVFLPCIPDSATVDAEALSNYSDDLRSK--- 239
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L S + ++VGHN F D+ + Y F G LP E+F +++ FP +IDTK + N
Sbjct: 240 LKSRQPVLVGHNLFTDLINFYKCFIGNLPDRIEDFKEAIHSLFPLVIDTKYMATHNC--- 296
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
S + P +L + +LA++ + K+ ++ + + HEAGY
Sbjct: 297 --------------SSVTPSSSLAEINDNLAMRKTPKIFIDPEHDKYV--GQKPLHEAGY 340
Query: 345 DAFMTGCVFAQACSHL 360
D+ +T V + + L
Sbjct: 341 DSLLTAKVLIKLTAEL 356
>gi|403330912|gb|EJY64371.1| Putative poly [Oxytricha trifallax]
Length = 1969
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GF VI + KK IVGHN DI IY++F G LP + ++F + +FP DTK+
Sbjct: 362 VGFTRVIGTMVKSKKPIVGHNLMFDICFIYNQFCGDLPDSFKDFYTLWKLFFPETYDTKV 421
Query: 276 LLNSNSILQ-----------QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
L S ++ Q KK + +L F V S V
Sbjct: 422 LAESTTLFPKSELQNVYRKCQCDKKLNNNLDIKFDV--------------KADSSFGVYQ 467
Query: 325 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
D+ S + H+AG+DA+MTG F ++ I
Sbjct: 468 IFDENASQSQVVDKGHDAGFDAYMTGYSFLTVAKYIEI 505
>gi|302835828|ref|XP_002949475.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
gi|300265302|gb|EFJ49494.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
Length = 570
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 209 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 268
EM ++ S GF V+D+L + +VGHN LD+A+ S+F G LP + + + + FP
Sbjct: 373 EMLVEQS-GFSQVLDVLRDAGRPLVGHNASLDLAYTLSQFNGVLPRNWRAYKALLQRAFP 431
Query: 269 -HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 327
+ DTK + + ++ + + L+ + L + L + + L ++ V
Sbjct: 432 GGLYDTKHI--ATQLIAAGVPVGDSGLANLYRTLMDEQWLRAHVPGVGLPATLGGGVP-- 487
Query: 328 DIRSSNWNSGV-------KHEAGYDAFMTGCVFAQACSHLGIDFKQQSSS 370
+IR + +G HEAG+DAFMTG F + + Q+SS
Sbjct: 488 EIRHAPGFAGYVGASVEKAHEAGFDAFMTGAAFTRLLRFVAAKVAMQASS 537
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
N +IF R P D ++ FLCQ++S+ +LA+ FDFN I +G+ ++ D L+
Sbjct: 137 NAYIFPR---PDDKTGWDKRFLCQSSSLAYLAEQGFDFNKMIRDGIGFIPLAARDAKLRS 193
Query: 66 VNSTYEDESLDSWHSLKEIR 85
+ E LD +E+R
Sbjct: 194 LR-----EELDKTQRSREVR 208
>gi|312375716|gb|EFR23028.1| hypothetical protein AND_13786 [Anopheles darlingi]
Length = 330
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 53/274 (19%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQED------ 60
+NF+ + + G + F CQ S+ FLA + FDFN EG+S+ + + +
Sbjct: 97 YNFYCYPK------GRTHIFSCQGESLRFLADHGFDFNKLFREGLSFATEAEAERLRSDL 150
Query: 61 KALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDE 118
K + + + D E D ++ +P AE + D + + L++ D+
Sbjct: 151 KERQANRAAALQAAADGTADDAETTDVNMVPVP----AEHQEQIDETAAKIEAFLKSDDK 206
Query: 119 GSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENS 178
V + NGF + L+ Q++ K+ + ++ ++ EN+
Sbjct: 207 ELIVN---------------------NCNGF--QRKLIYQMIEHKYQQRISTSTITLENN 243
Query: 179 CSQNVIVYIE----SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVG 234
+ + +E +E D+ + K V E + ++ IG V+ LS +KL++G
Sbjct: 244 ---HKCIKVERKRTAEEDQAIEQKRVAQENE-----DLQTMIGLSVVLQELSKARKLVIG 295
Query: 235 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 268
HN FLD+ + +FF PLP +EF + FP
Sbjct: 296 HNIFLDLLYTIRQFFKPLPTDFKEFKKLTKEIFP 329
>gi|327352392|gb|EGE81249.1| CAF1 family ribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 493
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
S D ++ + + D +DAE S R L S + ++VGHN F D+ + Y F
Sbjct: 167 SAMDPRVFLPCIPDSATVDAEALSNYSDDLRSK---LKSRQPVLVGHNLFTDLINFYKCF 223
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 308
G LP E+F +++ FP +IDTK + N S + P +L
Sbjct: 224 IGNLPDRIEDFKEAIHSLFPLVIDTKYMATHNC-----------------SSVTPSSSLA 266
Query: 309 SKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ +LA++ + K + +D HEAGYD+ +T V + + L
Sbjct: 267 EINDNLAMRKTPK--IFIDPEHDKYVGEKPLHEAGYDSLLTAKVLIKLTAEL 316
>gi|157869668|ref|XP_001683385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126450|emb|CAJ04256.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 598
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GFR V L +K VGHNCF D + S G LP ++ + + FP I DT+
Sbjct: 297 TVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARTRELFPCIWDTR 356
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIR-SSN 333
L + + + S SL + LG+ S+H ++ + E E D +
Sbjct: 357 YLASRRDLFPS-GRFGSISLGGLH-----EAYLGA-SSHCTVELPLGFE-EYDPVTLLGR 408
Query: 334 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSS--SENLA 374
NS HEAGYDA MTG V +G + + S+ LA
Sbjct: 409 GNSDAAHEAGYDALMTGTVLLNLLGEVGYTLETAPAELSQKLA 451
>gi|221488487|gb|EEE26701.1| CAF1 ribonuclease family protein [Toxoplasma gondii GT1]
Length = 1022
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
G R ++D +S +K L+VGHNCF D HI+ + LP + EF ++ + FP DTK++
Sbjct: 602 GVRQLLDDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLI 661
Query: 277 LNSNSIL 283
S+ L
Sbjct: 662 AESHDAL 668
>gi|115534690|ref|NP_506169.2| Protein K10C8.1 [Caenorhabditis elegans]
gi|83764264|emb|CAA98954.2| Protein K10C8.1 [Caenorhabditis elegans]
Length = 566
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
G ++ ++ KL+VGHN LD ++Y FF LP + F N FP I+DTK+L
Sbjct: 260 GVSAILQVVHMTGKLVVGHNSLLDAMYMYHYFFSHLPANYQMFKDKFNALFPRIMDTKLL 319
Query: 277 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVK--VEVEVDDIRSSNW 334
+ + S +L F GS + + P ++ +E ++ + +
Sbjct: 320 AQALRFELPGVGDSLENLGDYF---------GSDKSDKTVPPELRGFIEPWMNPLEDESE 370
Query: 335 NSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL 373
N V H AG+D+++TG VF + +H+ I+ + +E L
Sbjct: 371 N--VYHNAGFDSYVTGEVFLK-LAHIYINRRNNFKNEIL 406
>gi|237837885|ref|XP_002368240.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|211965904|gb|EEB01100.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|221508992|gb|EEE34561.1| CAF1 ribonuclease family protein [Toxoplasma gondii VEG]
Length = 1022
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
G R ++D +S +K L+VGHNCF D HI+ + LP + EF ++ + FP DTK++
Sbjct: 602 GVRQLLDDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLI 661
Query: 277 LNSNSIL 283
S+ L
Sbjct: 662 AESHDAL 668
>gi|119174987|ref|XP_001239804.1| hypothetical protein CIMG_09425 [Coccidioides immitis RS]
Length = 424
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L S++ ++VGHN F D+ + Y F G LP EEF+ +V++ FP I+DTK L +
Sbjct: 157 LKSKRLVLVGHNIFTDLVNFYKCFIGGLPDKVEEFLGNVHELFPMIVDTKYLATHDC--- 213
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
S S A L +S P+ + + + + HEAGY
Sbjct: 214 -----GSALPSSALEEL-------DESLRFRELPTFTTDAQ----HTKYVDEKPVHEAGY 257
Query: 345 DAFMTGCVFAQACSHL 360
D+ MT VF + S L
Sbjct: 258 DSLMTARVFLRLVSQL 273
>gi|347840116|emb|CCD54688.1| hypothetical protein [Botryotinia fuckeliana]
Length = 354
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)
Query: 221 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 280
VI L ++ +IVGHN F D+ +Y F G LP +F S ++ FP +IDTK L N
Sbjct: 66 VIKKLKEKQHVIVGHNLFTDLCFLYKTFIGDLPAGVGDFQSQIHSLFPFVIDTKYLATYN 125
Query: 281 SILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 340
S MK V ++ + + H+ P + + + ++ ++N N+ H
Sbjct: 126 S---DAMKP---------RVNLKELLIPFQRIHM---PLILLHEKHNNYSATNGNA---H 167
Query: 341 EAGYDAFMTGCVFAQACSHLGIDFKQQSSSE 371
EAG+D++MT + + + L + +QS S+
Sbjct: 168 EAGFDSWMTAELLVKLSAQL---YAEQSDSQ 195
>gi|268556560|ref|XP_002636269.1| Hypothetical protein CBG08556 [Caenorhabditis briggsae]
Length = 564
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 184 IVYIESESDKKM---LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSE---KKLIVGHNC 237
+++ +E DK + ++ E E + + ++ + F + +L + +K+IVGHN
Sbjct: 220 LLFSLNEKDKSLDVTMLPETMTETENKKQTRMRCTESFEGISAILEAAMMMRKVIVGHNS 279
Query: 238 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 297
LD ++Y FF LPL F N FP +IDTKIL I + S L
Sbjct: 280 LLDAMYMYHYFFSSLPLKYRNFKREFNSLFPKVIDTKILAQVIRIDLPGVGDSLERLGDY 339
Query: 298 FSVLCPQIALGSKSTHLALQPSVKVEV-----EVDDIRSSNWNSGVKHEAGYDAFMTGCV 352
F G++ ++ + P ++ + +DD S N+ H AG+D+++TG V
Sbjct: 340 F---------GTEKSNKTVPPELRGYIGPWMNPLDD-DSENY----YHNAGFDSYITGEV 385
Query: 353 F 353
F
Sbjct: 386 F 386
>gi|156033193|ref|XP_001585433.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980]
gi|154699075|gb|EDN98813.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 588
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 221 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 280
VI L ++ +IVGHN F D+ +Y F G LP +F S ++ FP +IDTK L N
Sbjct: 311 VIKTLKKKQHVIVGHNLFTDLCFLYKTFIGTLPAGVGDFQSQIHSLFPFVIDTKYLATYN 370
Query: 281 SILQQRMKKSSTSLSKAFSVLCPQIALGSK-STHLALQPSVKVEVEVDDIRSSNWNSGVK 339
S L V P I L K +T+ + +G
Sbjct: 371 SDAMNPRVNLKELLIPFQKVHMPLILLHEKHNTYGGV-------------------NGKS 411
Query: 340 HEAGYDAFMTGCVFAQACSHL 360
HEAG+D++MT +F + + L
Sbjct: 412 HEAGFDSWMTAELFVKLSAKL 432
>gi|154337822|ref|XP_001565137.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062184|emb|CAM36572.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 592
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GFR V L +K VGHNCF D + S G LP ++ + + FP + DT+
Sbjct: 292 TVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCMWDTR 351
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-----DDI 329
L + + + R + + SL G ++ P VE+ + D +
Sbjct: 352 YLASRHDLF-PRSRFDNISLG------------GLHEAYMGASPHCTVELPLGFEGYDPV 398
Query: 330 R-SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 379
S HEAGYDA MTG V G + +++ L+H L
Sbjct: 399 TLLGRGGSNAAHEAGYDALMTGTVLLNLLGEAG--YTLETAPAELSHKLAL 447
>gi|401422399|ref|XP_003875687.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491926|emb|CBZ27199.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 596
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GFR V L +K VGHNCF D + S G LP ++ + + FP + DT+
Sbjct: 297 TVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCMWDTR 356
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-----DDI 329
L + + + S SLS G +L P VE+ + D +
Sbjct: 357 YLASRRDLFPG-GRFGSISLS------------GLHEAYLGASPHCTVELPLGFEGYDPV 403
Query: 330 R-SSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
S HEAGYDA MTG V +G
Sbjct: 404 TLLGRGGSDAAHEAGYDALMTGTVLLNLLGEVG 436
>gi|83282387|ref|XP_729748.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23488425|gb|EAA21313.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 771
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 155 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 214
LL ++ K+F + + V + +N+ +Y +++K +++K Q ++ E I
Sbjct: 375 LLAHTLITKYFNSIFCISVKLNDK--KNLAIY---KTEKDSYNEQIKALQ-MEIE-KINE 427
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
+IG R + D + K+++GHNCF DI HIY F+ LP + F + FP+ +DTK
Sbjct: 428 TIGVRLLFDEIIKSNKILIGHNCFYDILHIYQTFYHELPDSIHAFKRKWTELFPYTVDTK 487
Query: 275 ILLNSNSIL 283
+ +N L
Sbjct: 488 YMNETNEYL 496
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
F T+++ FL + FDFN I GVSYL +ED+ KH+
Sbjct: 146 FSVSTSTLIFLKENNFDFNEWIFNGVSYLRPNEEDEKKKHI 186
>gi|71665029|ref|XP_819489.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70884792|gb|EAN97638.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 150/362 (41%), Gaps = 45/362 (12%)
Query: 8 NFFIFQRQ--ELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF +F E + + + + +S+ FL ++ +F + +++G++Y QE+ +
Sbjct: 91 NFVLFPHNSDEFNANERSRDVVLSPSSLAFLRRHDMNFQSWVYQGMAYCDANQEEALRQR 150
Query: 66 VNSTYEDESLDSWHSL--KEIRDTHLFNIPD-------ILFAERMKDRLSEWL-GGLLRN 115
Y + LDS H+ +E+ L + ++ A+ +R+ L ++N
Sbjct: 151 HEEKYRE--LDSIHNEGNQEVEGVSLLTEEEKKWYDNAVILAKAFSERIQAALEQAKVKN 208
Query: 116 RDEGS---EVQPSFNDSKQQFETIFFK-MRPAISLNGFTSHQLLLIQLVVRKHF-KDLAY 170
+ + EV + + + +F R + + H V +HF K L
Sbjct: 209 AGQTAGMVEVSAALDLIQSGGREVFLPPQRSKSARDALERH--------VEQHFHKLLLT 260
Query: 171 LRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKK 230
R G V+ E + ++++++ E + +GFR V + L +K
Sbjct: 261 FRRQGAVYIGMLRAVFPEERN-------RLREKEQAFREGELMNMLGFRLVFNALVESRK 313
Query: 231 LIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKS 290
VGHNC D+ + + GPLP + +F +N+ FP + DTK + + +Q+
Sbjct: 314 PCVGHNCLADLLFLLASLDGPLPDSLPKFKRRMNELFPTVFDTKYIAS-----RQQFFPL 368
Query: 291 STSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-----DDIRSSNWNS-GVKHEAGY 344
++ S L + S + H+ L + + + SS N+ G HEAGY
Sbjct: 369 ERFGARYLSGLFGEYGFRSANAHVTLPLGFESYDPLAVGGGEHHHSSGANAGGPTHEAGY 428
Query: 345 DA 346
DA
Sbjct: 429 DA 430
>gi|261200489|ref|XP_002626645.1| CAF1 family ribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239593717|gb|EEQ76298.1| CAF1 family ribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 493
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 189 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 248
S D ++ + + D +DAE S R L S + ++VGHN F D+ + Y F
Sbjct: 167 SAMDPRVFLPCIPDSATVDAEALSNYSDDLRSK---LKSRQPVLVGHNLFTDLINFYKCF 223
Query: 249 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 308
G LP E+F +++ FP +IDTK + N S + P +L
Sbjct: 224 IGNLPDRIEDFKEAIHSLFPLVIDTKYMATHNC-----------------SSVTPSSSLA 266
Query: 309 SKSTHLALQ--PSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ +LA++ P + ++ E D HEAGYD+ +T V + L
Sbjct: 267 EINDNLAMRKTPKIFIDPEHDKYVVEK----PLHEAGYDSLLTAKVLIKLTVEL 316
>gi|68074807|ref|XP_679320.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500041|emb|CAI00347.1| conserved hypothetical protein [Plasmodium berghei]
Length = 761
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 212 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 271
I +IG R + D + K+++GHNCF DI HIY F+ LP + F + FP+ +
Sbjct: 414 INETIGVRLLFDEIIKSNKILIGHNCFYDILHIYQTFYHELPDSIHVFKRKWTELFPYTV 473
Query: 272 DTKILLNSNSIL 283
DTK + +N L
Sbjct: 474 DTKYMNETNEYL 485
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
F T+++ FL + FDFN I GVSYL +ED+ KH+
Sbjct: 146 FSVSTSTLIFLKENNFDFNEWIFNGVSYLRPNEEDEKKKHI 186
>gi|378729834|gb|EHY56293.1| poly(A)-specific ribonuclease [Exophiala dermatitidis NIH/UT8656]
Length = 667
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/376 (19%), Positives = 142/376 (37%), Gaps = 122/376 (32%)
Query: 30 TTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL 89
+ ++ FL + F+ + I +GV YLSR++E++ K + ED D
Sbjct: 147 SGAVSFLIRNGFNIDRPILQGVQYLSRQEEEQVRKKL---LED-------------DQAR 190
Query: 90 FNIPDILF-------AERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRP 142
NIPD++ E ++ + +W Q + + ++ + I +
Sbjct: 191 ANIPDMILKEDDSPLVEHIRQSIKDW--------------QATPKEKQEPYVNIPAENAK 236
Query: 143 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 202
+Q+ L VVR + L + G Q E ++++K + +++++
Sbjct: 237 EPLPAALNRYQVRLTHQVVRNEYPKL---KTQGMGHFVQITNPTAEQQANEKEVREQIRE 293
Query: 203 EQKIDAEMSIKASIGFRHVIDL-------------------------------------L 225
+ ++A +GFR +I+ L
Sbjct: 294 REVLNA-------VGFRWIIEAIMGGDVSRMPHRYVQAAHPEGKAPDNIQGFLDDLQAKL 346
Query: 226 SSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ 285
S+++ +GHNC D+ ++Y F LP E+F + V + FP I+DTK +
Sbjct: 347 KSQQRAFIGHNCLTDLINLYRCFVDNLPERVEDFSARVQELFPLILDTKYI--------- 397
Query: 286 RMKKSSTSLSKAFSVLCPQIALGSKS-THLALQPSVKVEVEVDDIRSSNWNSG------- 337
LG+K +LQ +V+ +++ D+ + G
Sbjct: 398 -------------------AGLGNKRWADTSLQ-AVETDIDTLDVPRFTFAPGFDRYLHT 437
Query: 338 -VKHEAGYDAFMTGCV 352
HEAG+D+++T +
Sbjct: 438 STYHEAGFDSYVTAKI 453
>gi|367049582|ref|XP_003655170.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
gi|347002434|gb|AEO68834.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
+ + +IVGHN FLD+ I F PLP F + ++FP ++DTK L +S L
Sbjct: 319 IKQRRPVIVGHNPFLDLCFIQETFLRPLPDDVAAFRRDMGEFFPRVVDTKYL---SSQLG 375
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 344
R ++ L K +G S + P D R G H AG+
Sbjct: 376 FRTGRNLEQLYK---------LVGQGSVPITPMPGY-------DAR-----DGSAHNAGF 414
Query: 345 DAFMTGCVFAQACSHLGI 362
D++MT VF +G+
Sbjct: 415 DSWMTAAVFVSLSRKIGL 432
>gi|406865319|gb|EKD18361.1| CAF1 family ribonuclease [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 578
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 28/143 (19%)
Query: 221 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 280
V L + + LIVGHN F D+A ++ F G LP+ + F ++ FP +IDTK + N
Sbjct: 311 VTTTLRTHRPLIVGHNLFADLAFLFRTFVGHLPVNVKHFQEDIHALFPRVIDTKYVATYN 370
Query: 281 SILQQRMKKSSTSLSKAFSVLCPQIALGS-----KSTHLALQPSVKVEVEVDDIRSSNWN 335
+ + P++ L + TH L V ++ +
Sbjct: 371 T-----------------DAMNPRVGLKDLLAPFRKTHTPLI------VLHENHTAYGAG 407
Query: 336 SGVKHEAGYDAFMTGCVFAQACS 358
G +HEAG+D++MT +F + +
Sbjct: 408 FGKEHEAGFDSWMTAELFVKLAA 430
>gi|72392633|ref|XP_847117.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62176010|gb|AAX70132.1| ribonuclease, putative [Trypanosoma brucei]
gi|70803147|gb|AAZ13051.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 586
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 143/369 (38%), Gaps = 60/369 (16%)
Query: 8 NFFIFQRQE--LPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF IF E P G + + +S+ FL ++ +F + ++ G+ Y +E ++
Sbjct: 91 NFVIFPNHEDDSPSLGRGDDVVLNPSSLAFLRRHDMNFQSWVYRGMGYCDAAREVVLRQN 150
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLL----------RN 115
Y DS E R H ++ + ER W G + R
Sbjct: 151 HEEKYHPNLNDS----TEQRRRHAQSMELLTQEER------SWFDGAVAAAQSLCERARA 200
Query: 116 RDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLL-----------IQLVVRKH 164
E ++ Q + S E + A+ L ++++ +Q + +H
Sbjct: 201 AVERAQAQCAEKGSPGAIE-----LDAAMDLQRSGGREVVIQPQRNKNARECLQRHIAQH 255
Query: 165 FKDLAY-LRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVID 223
F+D++ R SG +++ ++ ++L KE ++ +M +GFR V
Sbjct: 256 FQDISLTFRRSGSTYHGTFKVLFPGEQA--RILEKECALRERELVDM-----LGFRLVFK 308
Query: 224 LLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSIL 283
L K VGHNC D+ + + G LP EF V + FP + DTK + + +
Sbjct: 309 ALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFKHRVVQLFPKVFDTKYIASRQDLF 368
Query: 284 QQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI------RSSNWNSG 337
+ S L+ F + S + ++L + E D + RS+ N
Sbjct: 369 PA-GRFGSRYLAGYFD----ECGFCSANVRVSLPLGFE---EYDPLKLSSVGRSAGGNGA 420
Query: 338 VKHEAGYDA 346
HEAGYDA
Sbjct: 421 PVHEAGYDA 429
>gi|154290929|ref|XP_001546053.1| hypothetical protein BC1G_15528 [Botryotinia fuckeliana B05.10]
Length = 406
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 121/304 (39%), Gaps = 77/304 (25%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
+F +++ +FL FD A GV YLS ++E +A + D+ ++ ++ I
Sbjct: 111 KFSFSSSATNFLQSNGFDIGAVFTMGVPYLSEQEEVEARERY-----DQRIERNAAIPSI 165
Query: 85 RDTHLFNIPDI---LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMR 141
+F+ D+ F R + ++EW+ E E + +F +
Sbjct: 166 ----VFDPSDVGTLEFYRRARSSITEWI--------EAKEPKMTFVNVDN---------- 203
Query: 142 PAISLNGFTSHQLLLIQLVVRKHFK--------DLAYLRVS------GENSCSQNVI--- 184
P LNGF Q L+ +VR F D ++++V +CS N
Sbjct: 204 PKGPLNGF---QRRLVHQLVRSEFPQCRCFARSDGSFMQVEMIDHDREARACSSNFFNPF 260
Query: 185 ---------VYIESESDKKMLMKEV--KDEQKIDAEMSIK-------ASIGFRH------ 220
I ++S + + + + D ID S K S+ H
Sbjct: 261 KIEQLKKFNQRIATQSGARFIFEALCGGDLIGIDPMWSYKHDENAQPDSVDSSHATLEAE 320
Query: 221 ---VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILL 277
VI L ++ +IVGHN F D+ +Y F G LP +F S ++ FP +IDTK L
Sbjct: 321 LTKVIKKLKEKQHVIVGHNLFTDLCFLYKTFIGDLPAGVGDFQSQIHSLFPFVIDTKYLA 380
Query: 278 NSNS 281
NS
Sbjct: 381 TYNS 384
>gi|261332931|emb|CBH15926.1| ribonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 509
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
GF+H L+ KK IVGHN +LDI + GPLP + + V++ FP + DTK L
Sbjct: 237 GFQHFWKCLTDCKKPIVGHNFWLDIMFMVQMHEGPLPEDYDTYKRLVHQLFPCVYDTKTL 296
Query: 277 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS 336
++ + +S L ++ LG ++ P + D + S
Sbjct: 297 --GREVIINNLSESFCLKDLYDRCLASRLKLG-RAPEFFFPPGFG-RYDPDSLESEC--- 349
Query: 337 GVKHEAGYDAFMTGCVFA 354
HEAGYD++MTG F+
Sbjct: 350 -KAHEAGYDSYMTGVAFS 366
>gi|71413865|ref|XP_809055.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70873378|gb|EAN87204.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 200 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 259
+++++++ E + +GFR V + L +K VGHNC D+ + + GPLP + +F
Sbjct: 283 LREKEQVFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKF 342
Query: 260 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 319
+N+ FP + DTK + + +Q+ ++ S L + S + H+ L
Sbjct: 343 KRRMNELFPIVFDTKYIAS-----RQQFFPLERFGARYLSGLFGEYGFRSANAHVTLPLG 397
Query: 320 VKVEVEV-----DDIRSSNWNS-GVKHEAGYDA 346
+ + + SS N+ G HEAGYDA
Sbjct: 398 FESYDPLAVGGGERHHSSGVNAGGPTHEAGYDA 430
>gi|340057431|emb|CCC51777.1| putative ribonuclease [Trypanosoma vivax Y486]
Length = 508
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
+GF + L KK ++GHN +LDI + P+P T ++ V++ FP I DTK
Sbjct: 237 VGFLNFWKCLVLCKKPVIGHNFWLDIMFMVQMHEAPIPETYGKYKEFVHQLFPFIYDTKT 296
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 335
L + L +R ++ LS + C + S L + P + D +S N+
Sbjct: 297 L---SQQLDKRNLFKTSHLSCLYKEYC-DLNRESADPILFVSPPGH---DTYDPKSPNFV 349
Query: 336 SGVKHEAGYDAFMTGCVFA 354
S HEAGYD++MTG VF+
Sbjct: 350 SKA-HEAGYDSYMTGVVFS 367
>gi|71748030|ref|XP_823070.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70832738|gb|EAN78242.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 509
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
GF+H L+ KK IVGHN +LDI + GPLP + + V++ FP + DTK L
Sbjct: 237 GFQHFWKCLTDCKKPIVGHNFWLDIMFMVQMHEGPLPEDYDTYKRLVHQLFPCVYDTKTL 296
Query: 277 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS 336
++ + +S L ++ LG + P + D + S
Sbjct: 297 --GREVIINNLSESFCLKDLYDRCLASRLKLGG-APEFFFPPGFG-RYDPDSLESEC--- 349
Query: 337 GVKHEAGYDAFMTGCVFA 354
HEAGYD++MTG F+
Sbjct: 350 -KAHEAGYDSYMTGVAFS 366
>gi|444727164|gb|ELW67669.1| Poly(A)-specific ribonuclease PARN [Tupaia chinensis]
Length = 642
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 110/273 (40%), Gaps = 53/273 (19%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GF VI +++ KL++GHN LD+ H +F+ PLP
Sbjct: 194 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPAD------------------- 234
Query: 275 ILLNSNSI--LQQRMKKSSTSLSKAFSVLC-PQIALGSKSTH----------LALQPSVK 321
L+N+ S+ L++R+K++ + K S P S+ H L
Sbjct: 235 -LINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 293
Query: 322 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE 381
+ S + S HEAGYDA++TG F + LG F A ++ +
Sbjct: 294 FLESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKIHVSARSKLIEP 352
Query: 382 HVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIR 441
N L+L ++++ N L +++H V+ FP K D+
Sbjct: 353 FFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLY 397
Query: 442 ECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ S +G I + +D+T+ FV S+ E V
Sbjct: 398 QLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 426
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQE 59
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E
Sbjct: 51 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE 101
>gi|261330312|emb|CBH13296.1| ribonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 586
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 142/379 (37%), Gaps = 80/379 (21%)
Query: 8 NFFIFQRQE--LPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSY--------LSRE 57
NF IF E P G + + +S+ FL ++ +F + ++ G+ Y L +
Sbjct: 91 NFVIFPNHEDDSPSLGRGDDVVLNPSSLAFLRRHDMNFQSWVYRGMGYCDAAREVVLRQN 150
Query: 58 QEDKALKHVNSTYE--------------------DESLDSWHSLKEIRDTHLFNIPDILF 97
E+K ++N + E D ++ + SL E R
Sbjct: 151 HEEKYHPNLNDSTEQRRRHAQSMELLTQEERSWFDGAVAAAQSLCE-RARAAVERAQAQC 209
Query: 98 AERMKDRLSEWLGGLLRNRDEGSEV--QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLL 155
AE+ + E + R G +V QP N + ++
Sbjct: 210 AEKGRPGAIELDAAMDLQRSGGRDVVIQPQRNKNARE----------------------- 246
Query: 156 LIQLVVRKHFKDLAY-LRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 214
+Q + +HF+D++ R SG +++ ++ ++L KE ++ +M
Sbjct: 247 CLQRHIAQHFQDISLTFRRSGSTYHGTFKVLFPGEQA--RILEKESALRERELVDM---- 300
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
+GFR V L K VGHNC D+ + + G LP EF V + FP + DTK
Sbjct: 301 -LGFRLVFKALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFKHRVVQLFPKVFDTK 359
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ-------PSVKVEVEVD 327
+ + + + S L+ F + S + ++L P VE
Sbjct: 360 YIASRQDLFPA-GRFGSRYLAGYFD----EYGFCSANVRVSLPLGFEEYDPLTLSSVE-- 412
Query: 328 DIRSSNWNSGVKHEAGYDA 346
RS+ N HEAGYDA
Sbjct: 413 --RSAGGNGAPVHEAGYDA 429
>gi|219125272|ref|XP_002182908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405702|gb|EEC45644.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 663
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/430 (22%), Positives = 172/430 (40%), Gaps = 75/430 (17%)
Query: 6 RHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
R+NF++F Q+ G E + ++ FL ++ + +GV+Y + DKA +
Sbjct: 90 RYNFYVFPAQD-GWSGETREVVLNPGAVAFLQQHNMSLDLWTQQGVTY---QTNDKAYET 145
Query: 66 VNSTYEDESL---------------DSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLG 110
V++ E E + DS E+R + DI F R L EWL
Sbjct: 146 VHAYVEKELIRERAAEDKERHANLQDSTRRRVELRRSE-----DIDFHARAMASLREWLD 200
Query: 111 GLLRNRDEGSEVQ----------PSFND--SKQQFETIFFKMRPAISLNGFTSHQLLLIQ 158
L N EG ++ PS N + +E+I + P + L ++Q+ +++
Sbjct: 201 AAL-NEVEGPPIELAPEGAAFLLPSCNSFLRRALYESIEAEY-PDLVLESAGNNQIRVLR 258
Query: 159 LVVRKHFKDLAYLRVSG-ENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIG 217
L + LR E + ++ E+ ++ E D S+ A +
Sbjct: 259 LTEEESQTRKQRLRREDWEKVVVNKIGMWRVFEAISRVCRGEHLDLTSAVLAPSVDA-VD 317
Query: 218 FRHVI-----DLLSSEKK-------LIVGHNCFLDIAHIYSKFF-GPLPLTAEEFISSVN 264
F + D LS K +V HN F+DI + + F LP T +E ++
Sbjct: 318 FTSPLVPFAEDTLSLGSKSSRRRNIPLVVHNGFMDICFLLTHFHHETLPDTLKECKGLIS 377
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
+YFP I DTK + S +++L+ F + Q + L+ ++V
Sbjct: 378 RYFPIIYDTKAVTTECST----WSNENSALAALFEKVVRQ--------NNGLEDRIEV-- 423
Query: 325 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSS----ENLAH---NE 377
V D + +HEA YDA+MTG ++ C + + ++ + N+ H +
Sbjct: 424 -VADAGRGDATDDQEHEAAYDAYMTGAIYIGLCEQIKSTLQDETVALDGVGNMTHLTIDN 482
Query: 378 KLREHVNLLY 387
+ E+ LLY
Sbjct: 483 EGTENTRLLY 492
>gi|357504879|ref|XP_003622728.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
gi|355497743|gb|AES78946.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
Length = 206
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGV 51
+NF +F R EL L AY FLCQT+ + +A+ FDFNACI+EG
Sbjct: 115 YNFLLFPRDELKLGMPAYSFLCQTSHLATMARQGFDFNACIYEGA 159
>gi|240278594|gb|EER42100.1| CAF1 family ribonuclease [Ajellomyces capsulatus H143]
Length = 535
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 208 AEMSIKASIGFRHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 264
A ++ S R+ DL L S + ++VGHN F D+ + Y F G LP E+F ++++
Sbjct: 226 APVNTSTSALLRYSDDLQLKLKSRQPVLVGHNLFTDLINFYKCFIGDLPDRIEDFKNAIH 285
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
FP +IDTK + N SS + S + + + ++ ++ + L P V
Sbjct: 286 ALFPLVIDTKYMATHNC--------SSMTPSSSLTEINDKLE-QRRTPRILLDPEHDKYV 336
Query: 325 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ + HEAGYD+ +T V + + L
Sbjct: 337 DEKPL----------HEAGYDSLLTAKVLIRLAAEL 362
>gi|225555913|gb|EEH04203.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 522
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 208 AEMSIKASIGFRHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 264
A ++ S R+ DL L S + ++VGHN F D+ + Y F G LP E+F ++++
Sbjct: 213 APVNTSTSALLRYSDDLQLKLKSRQPVLVGHNLFTDLINFYKCFIGDLPDRIEDFKNAIH 272
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
FP +IDTK + N SS + S + + + ++ ++ + L P V
Sbjct: 273 ALFPLVIDTKYMATHNC--------SSMTPSSSLTEINDKLE-QRRTPRILLDPEHDKYV 323
Query: 325 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ + HEAGYD+ +T V + + L
Sbjct: 324 DEKPL----------HEAGYDSLLTAKVLIRLAAEL 349
>gi|325090486|gb|EGC43796.1| CAF1 family ribonuclease [Ajellomyces capsulatus H88]
Length = 522
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 208 AEMSIKASIGFRHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 264
A ++ S R+ DL L S + ++VGHN F D+ + Y F G LP E+F ++++
Sbjct: 213 APVNTSTSALLRYSDDLQLKLKSRQPVLVGHNLFTDLINFYKCFIGDLPDRIEDFKNAIH 272
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
FP +IDTK + N SS + S + + + ++ ++ + L P V
Sbjct: 273 ALFPLVIDTKYMATHNC--------SSMTPSSSLTEINDKLE-QRRTPRILLDPEHDKYV 323
Query: 325 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+ + HEAGYD+ +T V + + L
Sbjct: 324 DEKPL----------HEAGYDSLLTAKVLIRLAAEL 349
>gi|407868227|gb|EKG08788.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 200 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 259
++++++ E + +GFR V + L +K VGHNC D+ + + GPLP + +F
Sbjct: 283 LREKEQAFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKF 342
Query: 260 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 319
+N+ FP + DTK + + +Q+ ++ S L + S + H+ L
Sbjct: 343 KRRMNELFPIVFDTKYIAS-----RQQFFPLERFGARYLSGLFGEYGFRSANAHVTLPLG 397
Query: 320 VKVEVEV-----DDIRSSNWNS-GVKHEAGYDA 346
+ + + SS N+ G HEAGYDA
Sbjct: 398 FESYDPLAVGGGERHHSSGANAGGPTHEAGYDA 430
>gi|324507288|gb|ADY43094.1| Poly(A)-specific ribonuclease PARN [Ascaris suum]
Length = 616
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 121/305 (39%), Gaps = 71/305 (23%)
Query: 5 GRH------NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQ 58
GRH N ++F+R ++ + F S+ FL ++ FDFN I++GV+Y + ++
Sbjct: 79 GRHYKVDVYNIYLFKRT---INRRVFSF--SIPSIAFLGEHDFDFNKAINKGVTYANLDE 133
Query: 59 EDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDIL--FAERMKDRLSE--------- 107
+ + S E+ LD + E ++HL ++ L ER++ S
Sbjct: 134 ----ISTIRSDLEEGLLD-YDIFGERFNSHLISVQCYLSDMLERLRKAASPPTISMYQEV 188
Query: 108 WLGGLLRNRDEG--------SEVQP----SFNDSKQQFETIFFKMRPAISLNGFTSHQLL 155
+ N D+ SE QP F ++ Q F SL+ T H
Sbjct: 189 TFSPFVLNLDDAIFDPYACRSEAQPLNHRKFCATRLQAAARLF------SLHSNTHH--- 239
Query: 156 LIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKAS 215
L+V G Q K + VK+E+ ++
Sbjct: 240 -------------VKLKVDGHRLHVQQA----------KPNERRVKNERAKLLNKTVNEI 276
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 275
G ++ + + +VGHNC D+ +IY FF LP ++ ++N FP IIDT+I
Sbjct: 277 AGASQILYAIIDARLPVVGHNCLFDLLYIYQYFFADLPEDYAKWKKALNTIFPVIIDTRI 336
Query: 276 LLNSN 280
L N
Sbjct: 337 LAEEN 341
>gi|302855310|ref|XP_002959151.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
gi|300255470|gb|EFJ39774.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
Length = 987
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 233 VGHNCFLDIAHIYSKFF-GPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ--RMKK 289
VGHNC D+A+ S+F G LP T E F +V +F L ++ I +Q +
Sbjct: 538 VGHNCMFDVAYGISQFGEGRLPATWEGFKRAVAHWF-----RGGLYDTKHICRQLPELLG 592
Query: 290 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVK--------VEVEVDDIRSSNWNSGVKHE 341
S T L+ + L PQ ++ S + L + S+ V V ++ HE
Sbjct: 593 SDTMLAVMYGSLVPQNSVTSGTGPLPARVSISHARGFEKYVAVAAGEL---------AHE 643
Query: 342 AGYDAFMTGCVFA 354
AGYDAFMTG VFA
Sbjct: 644 AGYDAFMTGSVFA 656
>gi|410960341|ref|XP_003986750.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Felis catus]
Length = 681
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 222 IDLLSSEKKLI--VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNS 279
+D L ++++ + VGHN D+ H++ KFF PLP + ++F +++ FP +IDTK + +
Sbjct: 401 VDALPAKRRSVPLVGHNMMTDLLHLHEKFFRPLPESYDQFKLNIHNLFPVLIDTKNV--T 458
Query: 280 NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK 339
I ++ ++LS+ + VL + S + + S K E + +
Sbjct: 459 KDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHAS-KCEKYAE--------TKYP 509
Query: 340 HEAGYDAFMTGCVFAQACSHL 360
HEA YDAF+ G V + +HL
Sbjct: 510 HEAAYDAFLCGSVLLKV-AHL 529
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 82 NFFLFPTTFGVLDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH 135
>gi|146087155|ref|XP_001465741.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398015556|ref|XP_003860967.1| hypothetical protein, conserved [Leishmania donovani]
gi|134069841|emb|CAM68168.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322499191|emb|CBZ34262.1| hypothetical protein, conserved [Leishmania donovani]
Length = 601
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 21/168 (12%)
Query: 215 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
++GFR V L + +K VGHNCF D + S LP ++ + + FP + DT+
Sbjct: 297 TVGFRLVFTELVNSRKPCVGHNCFADWLFLMSAMDSTLPEQLPQWKARARELFPCMWDTR 356
Query: 275 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-----DDI 329
L + + + S SL G +L P VE+ + D +
Sbjct: 357 YLASRRDLFPS-GRFGSISLG------------GLHEAYLGASPHCIVELPLGFEGYDPV 403
Query: 330 R-SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSS--SENLA 374
S HEAGYDA MTG V +G + + S+ LA
Sbjct: 404 TLLGRGGSDAAHEAGYDALMTGTVLLNLLGEVGYTLETAPAELSQKLA 451
>gi|193785796|dbj|BAG51231.1| unnamed protein product [Homo sapiens]
Length = 351
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 37/238 (15%)
Query: 238 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 297
LD+ H +F+ PLP EF FP ++DTK++ + ++
Sbjct: 2 LLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQP 45
Query: 298 FSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356
F + +L L P +VE + S + S HEAGYDA++TG F
Sbjct: 46 FKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISM 105
Query: 357 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 416
++LG F A ++ + N L+L ++++ N L +++H
Sbjct: 106 ANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH 158
Query: 417 YPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 159 ---------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 203
>gi|384490758|gb|EIE81980.1| hypothetical protein RO3G_06685 [Rhizopus delemar RA 99-880]
Length = 622
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 135/347 (38%), Gaps = 86/347 (24%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + F +S+ FL +FDFN I EG+ + + +E N
Sbjct: 86 NFYIFGNDSTDIHSRRV-FTSTASSLAFLRSNKFDFNKLIDEGIPFYNFTEEGS----FN 140
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
ST S+ + + I+++ L F + + ++ WL +G+ +P
Sbjct: 141 STQSGTSMLNRRTY--IKESSL-TTNGKNFLDNARTAIATWL--------QGNTEKPLVV 189
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
+ F ++ L+ Q V+ KH N V +
Sbjct: 190 QTNSHF------------------YKKLITQEVLEKH-----------------NGYVQV 214
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKA-SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
K + + +K+E+K E + + ++ FR VI+ + K +V HN LDI H
Sbjct: 215 APRDSKHVQLVRLKEEEKRQREAKVSSPTLNFRAVIEAIKDAKCPVVAHNGALDIFHTVD 274
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
+F+ LP T EE V + +T +L + + + +K++ ++ A
Sbjct: 275 QFWQYLPETIEE-CKDVGCF-----NTTVLGSLYNTVFDELKEAGQEITMA--------- 319
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
P + R + + +HEAGYDA+MTG ++
Sbjct: 320 -----------PGFE--------RYTGEGNNTEHEAGYDAYMTGVIY 347
>gi|83771094|dbj|BAE61226.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871094|gb|EIT80260.1| hypothetical protein Ao3042_03277 [Aspergillus oryzae 3.042]
Length = 205
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
L + + ++VGHN F D+ ++Y FFGPLP EEF + V+ FP ++DTK +
Sbjct: 111 LRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKYM 162
>gi|124809489|ref|XP_001348587.1| CAF1 family ribonuclease, putative [Plasmodium falciparum 3D7]
gi|23497484|gb|AAN37026.1| CAF1 family ribonuclease, putative [Plasmodium falciparum 3D7]
Length = 862
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 155 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD-EQKIDAEMSIK 213
LL ++ K+F + + V + +++ VY S+K +++K+ EQ+I+ I
Sbjct: 444 LLAHTLITKYFDSIFCISVKVNDR--KHLAVY---RSEKDSYKEQIKNLEQEIEK---IN 495
Query: 214 ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDT 273
IG R + D + KK+I+GHNCF DI HIY F+ LP + F + FPH DT
Sbjct: 496 QIIGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHDLPKSINVFKKKWTELFPHTFDT 555
Query: 274 KILLNSNSIL 283
K + +N L
Sbjct: 556 KYINETNEYL 565
>gi|343475142|emb|CCD13380.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 586
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 19/188 (10%)
Query: 163 KHFKD--LAYLRVSGENSCSQNVIVYIESESDKKMLMKE--VKDEQKIDAEMSIKASIGF 218
+H++D L + R G + + E ++L KE +D + +D +GF
Sbjct: 254 EHYEDIFLTFRRAGGVYHGTMRALFPTER---AQLLEKERASRDRELVD-------KLGF 303
Query: 219 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 278
R V L KK VGHNC DI + + F G P T F V FP + DTK +
Sbjct: 304 RLVFKALVESKKPCVGHNCLADILFLLASFDGEPPGTLPAFKHRVGHLFPMVFDTKYIAT 363
Query: 279 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGV 338
+ + ++ L F + S H++L + + +
Sbjct: 364 RQDLFPP-ARFTAHYLGGYFD----EYGFNSACIHVSLPLGFEAYDPLTIAGGGGGGNSP 418
Query: 339 KHEAGYDA 346
HEAGYDA
Sbjct: 419 THEAGYDA 426
>gi|134074883|emb|CAK38993.1| unnamed protein product [Aspergillus niger]
Length = 480
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 139/351 (39%), Gaps = 85/351 (24%)
Query: 29 QTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTH 88
Q+++++FL + +F GV+YLSR++E + + V +E + SL D
Sbjct: 107 QSSAVEFLLENKFSMEDLYKNGVTYLSRDEESRIMARV--MQRNERTTARSSL----DVG 160
Query: 89 LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 148
+ F + ++ + EWL L + R++ + P + M LN
Sbjct: 161 DHEYESLAFLKDVRRLVDEWLA-LGKAREDYLNIPPPRPITGPAPSNHPKSM--PTDLNR 217
Query: 149 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 208
F Q L+ ++ + L + G I I+ + ++ K V+D++
Sbjct: 218 F---QKRLVHQLIEVEYPSLVTVSRPG-------FIQIIDYDEQRE---KAVRDQRVKWV 264
Query: 209 EMSIKASIGFRHV-----------------IDLLSSEKK--------------------- 230
+ I GFR + I+L+SS K+
Sbjct: 265 QERIWKQTGFRWIAEALAGGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNR 324
Query: 231 -LIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSI 282
++VGHN F D+ + FFGPLP E+F + ++ FP ++DTK + +N S
Sbjct: 325 PVLVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNCGSINPRSS 384
Query: 283 LQQ----RMKKSSTSLSKAFSVL-------------CPQIALGSKSTHLAL 316
LQ+ K+ + ++S++ ++L P G T LAL
Sbjct: 385 LQEINDSLAKQPTPAISRSIAILSFLTNVDQVYTLNLPNTTRGQSITKLAL 435
>gi|429329360|gb|AFZ81119.1| hypothetical protein BEWA_005270 [Babesia equi]
Length = 284
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF-PHIIDTKI 275
G H+I+ L +KK +V HN LDI HIY KF G LP ++ E + + F I DTK
Sbjct: 152 GIHHIIEELIEQKKPLVFHNGMLDILHIYDKFIGKLPESSVEISKELVRLFRGGIFDTKF 211
Query: 276 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTH----LALQPSVKVEVEVDDIRS 331
R + +K + P + H L P + D +
Sbjct: 212 F--------ARYLHENFGYNKLRNTTLPTLHSALNGFHNMKELTDIPEERAHFNYIDKET 263
Query: 332 SNWNSGVKHEAGYDAFMTGCV 352
N N HEAG+DA + V
Sbjct: 264 GNINEKFFHEAGFDATIAAMV 284
>gi|224006131|ref|XP_002292026.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972545|gb|EED90877.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 848
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 228 EKKLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR 286
E LI+ HN D+ + + LP + E+ + +YFP I DTK+L S
Sbjct: 525 EVPLII-HNGLQDLMFLLTHCDNAKLPESFEDTKKLIQQYFPTIYDTKVL--STEYSDAI 581
Query: 287 MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW-NSGVKHEAGYD 345
+K ST+L F C +P +++ I + N +G HEA YD
Sbjct: 582 IKGGSTALGDLFDATC------------RTEPD-EMKFTAPTIANQNGEGTGQAHEAAYD 628
Query: 346 AFMTGCVFAQACSHL------GIDFKQ--QSSSENLAHNEKLRE--HVNLLYLSWTNGEI 395
A+MTGCVFA S + G+ Q Q S+NL RE +N +Y+
Sbjct: 629 AYMTGCVFAALSSRILGSGRNGLTLDQLLQGPSDNLP-----RELLGLNKIYMH------ 677
Query: 396 INLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECIS 445
++L T + S S + E V G +++ DI +C+S
Sbjct: 678 LSLYTIDLESSSGPPGLHDPLSSGLSIETTFHVSGISTNISTRDIYQCLS 727
>gi|116207778|ref|XP_001229698.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
gi|88183779|gb|EAQ91247.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
Length = 406
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 284
L + + +++GHN FLD+ ++ F PLP A F + +++FP IIDTK L
Sbjct: 177 LRAHRPILIGHNPFLDLCFLHETFLQPLPADALAFRRATHRFFPRIIDTKHLAC------ 230
Query: 285 QRMKKSSTSLSKAFSVLCPQIALGSK---------STHLALQPSVKVEVEVDDIRSSNWN 335
Q K S +L++ ++ L + GS+ H PS + +
Sbjct: 231 QLGWKPSRNLAQLYADL---VGRGSRIHPKPQHHRHHHHQQPPSPPPFSIIPEPGFDPRE 287
Query: 336 SGVKHEAGYDAFMTGCVF 353
G+ H AG+D++MT VF
Sbjct: 288 RGMAHSAGFDSWMTAVVF 305
>gi|342184465|emb|CCC93947.1| putative ribonuclease [Trypanosoma congolense IL3000]
Length = 510
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 19/211 (9%)
Query: 158 QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIG 217
QL + K + Y+ + + S S V + + +KE + + G
Sbjct: 179 QLTLSKLRNERIYIAMEYDKSLSMGTSVLVTVRRMEPGALKEETTRLEDPTASETGMAEG 238
Query: 218 FRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILL 277
F+ L KK +VGHN +LDI + GPLP + + VN +FP I DTK L
Sbjct: 239 FQPFWKCLIKYKKPLVGHNFWLDIMFLVQMHAGPLPDDYDAYKKLVNYHFPVIYDTKTL- 297
Query: 278 NSNSILQQRMKKSSTSLSKAFSVLCPQIALG---SKSTHLALQPSVKV-EVEVDDIRSSN 333
L +R S L + IAL K P + EVD+
Sbjct: 298 --GRQLVKRSPLESFCLKDLYD---RAIALNKSLPKPLEFISPPEFNLYNTEVDEC---- 348
Query: 334 WNSGVKHEAGYDAFMTG---CVFAQACSHLG 361
S HEAG+D+++TG C+ C G
Sbjct: 349 --SCKVHEAGFDSYITGITFCIIRHCCGSGG 377
>gi|440801102|gb|ELR22127.1| poly(A)-specific ribonuclease, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 272
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 235 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSL 294
HN LD+ + Y F LP + F ++NK FP I DTK + ++ + R+
Sbjct: 1 HNLLLDLLYSYFHFEDRLPSSFRNFKVAINKVFPTIFDTKHIAATDPAYKDRL------- 53
Query: 295 SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
++ G + A++ V V V + N HEAG+DA+MTG +FA
Sbjct: 54 ----------LSTGLGDVYAAVKGGVNV-VHAEGFDRYRENEEYAHEAGFDAYMTGAIFA 102
>gi|344239262|gb|EGV95365.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 74
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 224 LLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
+L +K +VGHN +D+ H+ KFF PLP + +EF +++ FP IIDTK
Sbjct: 1 MLVRAQKSLVGHNMMMDLLHLLEKFFKPLPESYDEFKQNIHSLFPVIIDTK 51
>gi|221501679|gb|EEE27443.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 551
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTK 274
G + +I+ + ++K +V HN LD+ H++ KF G +P T EF S + + F I DTK
Sbjct: 312 TGLQRLIEAIVEKEKPLVVHNGHLDLLHVFDKFIGKVPGTLPEFCSEMLRLFTGGIYDTK 371
Query: 275 ILLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVE 325
+ N ++ T+ L ++ S+ +IA +S L Q ++
Sbjct: 372 HVANEGKTFVLKIGDPRTTSLVSLRHHLLRSESLCVFEIAPHRRSAFDLTFQ-----QLN 426
Query: 326 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
D S G HEAGYDA +T +F
Sbjct: 427 CD----SGPECGRSHEAGYDALLTAQIF 450
>gi|237844919|ref|XP_002371757.1| CAF1 family ribonuclease domain containing protein [Toxoplasma
gondii ME49]
gi|211969421|gb|EEB04617.1| CAF1 family ribonuclease domain containing protein [Toxoplasma
gondii ME49]
Length = 551
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTK 274
G + +I+ + ++K +V HN LD+ H++ KF G +P T EF S + + F I DTK
Sbjct: 312 TGLQRLIEAIVEKEKPLVVHNGHLDLLHVFDKFIGKVPGTLPEFCSEMLRLFTGGIYDTK 371
Query: 275 ILLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVE 325
+ N ++ T+ L ++ S+ +IA +S L Q ++
Sbjct: 372 HVANEGKTFVLKIGDPRTTSLVSLRHHLLRSESLCVFEIAPHRRSAFDLTFQ-----QLN 426
Query: 326 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
D S G HEAGYDA +T +F
Sbjct: 427 CD----SGPECGRSHEAGYDALLTAQIF 450
>gi|221059585|ref|XP_002260438.1| CAF1 family ribonuclease [Plasmodium knowlesi strain H]
gi|193810511|emb|CAQ41705.1| CAF1 family ribonuclease, putative [Plasmodium knowlesi strain H]
Length = 857
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 212 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 271
I ++G R + D + KK+I+GHNCF DI HIY F+ LP + F + + FP+
Sbjct: 492 INQTVGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHELPNSISVFKNKWTEIFPYTF 551
Query: 272 DTKILLNSNSIL 283
DTK L +N L
Sbjct: 552 DTKYLNETNEYL 563
>gi|221480959|gb|EEE19373.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 550
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 216 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTK 274
G + +I+ + ++K +V HN LD+ H++ KF G +P T EF S + + F I DTK
Sbjct: 311 TGLQRLIEAIVEKEKPLVVHNGHLDLLHVFDKFIGKVPGTLPEFCSEMLRLFTGGIYDTK 370
Query: 275 ILLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVE 325
+ N ++ T+ L ++ S+ +IA +S L Q ++
Sbjct: 371 HVANEGKTFVLKIGDPRTTSLVSLRHHLLRSESLCVFEIAPHRRSAFDLTFQ-----QLN 425
Query: 326 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 353
D S G HEAGYDA +T +F
Sbjct: 426 CD----SGPECGRSHEAGYDALLTAQIF 449
>gi|156100457|ref|XP_001615956.1| poly(A)-specific ribonuclease [Plasmodium vivax Sal-1]
gi|148804830|gb|EDL46229.1| poly(A)-specific ribonuclease , putative [Plasmodium vivax]
Length = 836
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 212 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 271
I ++G R + D + KK+I+GHNCF DI HIY F+ LP + F + + FP+
Sbjct: 489 INQTVGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHELPNSISLFKNKWTELFPYTF 548
Query: 272 DTKILLNSNSIL 283
DTK L +N L
Sbjct: 549 DTKYLNETNEYL 560
>gi|401412380|ref|XP_003885637.1| putative CAF1 family ribonuclease domain containing protein
[Neospora caninum Liverpool]
gi|325120057|emb|CBZ55609.1| putative CAF1 family ribonuclease domain containing protein
[Neospora caninum Liverpool]
Length = 559
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTKI 275
G + +I+ + ++K +V HN LD+ H + KF G +P T EF S + + F I DTK
Sbjct: 321 GLQRLIEAIVEKEKPLVVHNGHLDLLHAFDKFIGKVPDTLAEFRSEMLRLFTGGIYDTKH 380
Query: 276 LLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVEV 326
+ N ++ T+ L ++ SV +IA +S L+ Q ++
Sbjct: 381 MANEGKTFVLKIGDPRTTSLVSLRHHLLRSESVCLFEIAPHRRSDFDLSFQ-----QLNC 435
Query: 327 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLA 374
D S G HEAGYDA +T +F L + + S SE+LA
Sbjct: 436 D----SGPECGRSHEAGYDALLTAQIFVM---ELDLYAQHHSVSESLA 476
>gi|389585420|dbj|GAB68151.1| poly(A)-specific ribonuclease, partial [Plasmodium cynomolgi strain
B]
Length = 606
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 212 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 271
I ++G R + D + KK+I+GHNCF DI HIY F+ LP + F + + FP+
Sbjct: 489 INQTVGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHELPNSISVFKNKWTEIFPYTF 548
Query: 272 DTKILLNSNSIL 283
DTK L +N L
Sbjct: 549 DTKYLNETNEYL 560
>gi|389603471|ref|XP_001569280.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505865|emb|CAM44421.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 510
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 201 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
K+++++ E +GFR +L +K IVGHN DI + PLP+ EF
Sbjct: 222 KEKRRLRCERDRARQLGFRQFWKILLKSRKPIVGHNFMQDIMFMIHMHETPLPVDYLEFK 281
Query: 261 SSVNKYFPHIIDTKI----LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 316
+ + P I DTK L+ N+ ++ + +L + L + L
Sbjct: 282 KLLQRTLPTIYDTKTMAAKLMGDNAFQVTHLESLYQECRRRAGLLTDEFTLQYR-----L 336
Query: 317 QPSVKVEVEVDDIRSSNWNS-GVK-----HEAGYDAFMTGCVF 353
P N+N VK HEA YDA+MTG F
Sbjct: 337 PPGF-----------YNYNDYAVKQQSKAHEAAYDAYMTGIAF 368
>gi|407408061|gb|EKF31630.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 649
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 229 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 283
KK++V HN D+A +Y+ LP T EF S+ FP DT+ L L + +L
Sbjct: 396 KKILVIHNGLSDLAFLYAAMHQQLPKTLGEFKRSIRDMFPFFFDTRTLTCAPSLQNIGML 455
Query: 284 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 340
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 456 TATLKKTYFTLLKRNKRIQIHCPS------SFEVAEQSEMK-----------------EH 492
Query: 341 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 366
+A DAFMTG +F A + +G DF++
Sbjct: 493 DAVIDAFMTGSLFLFAQEELAQVGSDFRR 521
>gi|229593727|ref|XP_001026894.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|225567345|gb|EAS06649.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 1272
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 51/255 (20%)
Query: 160 VVRKHFKDLAY----------LRVSGENSCS-----QNVIVYIESESDKKMLMKEVKDEQ 204
V+R+ ++ +Y ++ + E+ C +N + +I+ E +L KEV EQ
Sbjct: 88 VIRRKIENTSYKPEVVLESGAIKFNAEHGCDFDQWIKNSVTHIDREQYANLL-KEV--EQ 144
Query: 205 KID--------AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLP--- 253
K D A SI S+GF +L+ IVGHNC++D+ +++ F G LP
Sbjct: 145 KNDLSQAERNKAINSIHQSLGFTKFFELVGKRNVPIVGHNCYMDLLFLHNSFIGALPQYY 204
Query: 254 ---LTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSL--SKAFSV--LCPQIA 306
L+ EE + + ++K ++ ++R+ S L SKA SV +
Sbjct: 205 SKKLSVEEEEEQKHSQEANDEESKESSTQSNNYKERIFSSFQKLYDSKAISVSFFKEFMT 264
Query: 307 LGSKSTHL-ALQPSV----------KVEVEVDDIRSSNW----NSGVKHEAGYDAFMTGC 351
+KST L +L+ + ++++ + NW N HEAG+D+++TG
Sbjct: 265 DDNKSTSLESLKEFIYTNLSKYRLAEIQLGQGAYQDYNWDDPNNQQKFHEAGFDSYLTGW 324
Query: 352 VFAQACSHLGIDFKQ 366
+F Q +FK+
Sbjct: 325 IFLQLRQFYVENFKK 339
>gi|154276184|ref|XP_001538937.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414010|gb|EDN09375.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 421
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 122/278 (43%), Gaps = 45/278 (16%)
Query: 35 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI-P 93
FL K F A EG+ YLSR +E +A+ + +S HS+ +I D + ++ P
Sbjct: 108 FLMKNGFRMEAPFVEGLPYLSRLEEKQAMAKL--------AESEHSITKIMDVNPKDMDP 159
Query: 94 DI-LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS- 151
+ F +++ + W+ D + +P ++ E+ R SLN +
Sbjct: 160 ESQAFLTQVRRLIDAWINETGDKEDYLNIPEPCPLENGNT-ESPLGSWR--FSLNSYQKR 216
Query: 152 --HQLLLIQL-----VVRKHF-KDLAY-------LRVSGENSCSQNVIV------YIE-- 188
HQL+ ++ + R+ F + + Y +RV + + VI +E
Sbjct: 217 LVHQLVRVEYPSLVSIGRQTFVQIIPYDKQREESIRVDKSRALRERVIQKTGFRWVVEGM 276
Query: 189 -----SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDL-LSSEKKLIVGHNCFLDIA 242
S D ++ + + + ++ S A + + + L L S + ++VGHN F D+
Sbjct: 277 VGGGLSAMDPRVFLSCISNPAPVNT--STSALLSYSDDLQLKLKSRQPVLVGHNLFTDLI 334
Query: 243 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 280
+ Y F G LP E+F ++++ FP +IDTK + N
Sbjct: 335 NFYKCFIGDLPDRIEDFKNAIHALFPLVIDTKYMATHN 372
>gi|336268418|ref|XP_003348974.1| hypothetical protein SMAC_01995 [Sordaria macrospora k-hell]
gi|380094234|emb|CCC08451.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 552
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 227 SEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSIL 283
+++ +++ H+ + H YS F GPLP T +EF +++ +P I+DT++L + ++ L
Sbjct: 309 AKRPILLVHSQLDMLCHFYSTFLGPLPKTLDEFTKRIHQIYPRIVDTRVLYSPDTFL 365
>gi|281200346|gb|EFA74567.1| hypothetical protein PPL_00067 [Polysphondylium pallidum PN500]
Length = 525
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 219 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
R +IDLLS ++ +V HN F D+ ++ F LP FI+ + K FP I DTK L
Sbjct: 232 RRIIDLLSKHQQPLVIHNGFYDLLFLFQSFIDDLPDQLNVFIAKLTKVFPKIYDTKFL 289
>gi|340056520|emb|CCC50853.1| putative ribonuclease [Trypanosoma vivax Y486]
Length = 640
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 207 DAEMSIKASIGFRHVIDLLSS--EKKL-IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 263
D+ +S + G R ++ +++ E+K+ +V HN F D+A +Y P + EF +
Sbjct: 369 DSTVSDERYFGTRLLLAFITTMRERKIPLVLHNGFSDLAFLYCMLHRDTPQSLAEFKGRI 428
Query: 264 NKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 323
+ FP I DT+ L S+ Q ++ + L K + I L S++ + + S
Sbjct: 429 REMFPVIYDTRALTCVPSL--QNIQNMTGPLKKTY------INLRSRNVFVNINYSGSTP 480
Query: 324 VEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
D R +H+A +D+FMTG +FA
Sbjct: 481 CPGDTAR--------EHDACFDSFMTGSLFA 503
>gi|407860775|gb|EKG07489.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 229 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 283
KK++V HN D+A + + P P T EF ++ + FP DT+ L L + IL
Sbjct: 380 KKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREMFPFFFDTRTLTCAPSLQNIGIL 439
Query: 284 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 340
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 440 TATLKKTYFTLLKRNKRIQLHCPS------SFEVAEQSEMK-----------------EH 476
Query: 341 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 366
+A DAFMTG +F A + +G DF++
Sbjct: 477 DAVIDAFMTGSLFLFAQEELAQVGSDFRR 505
>gi|70951349|ref|XP_744922.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525070|emb|CAH77554.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 759
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 212 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 271
I +IG R + D + K+++GHN F DI HIY F+ LP + F + P+ I
Sbjct: 413 INETIGVRLLFDEIIKSNKILIGHNWFYDILHIYQTFYHELPDSIHAFKRKWTE-LPYTI 471
Query: 272 DTKIL 276
DTK +
Sbjct: 472 DTKYM 476
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 26 FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
F T+++ FL + FDFN I GVSYL +ED+ KH+
Sbjct: 166 FSVSTSTLIFLKENNFDFNEWIFNGVSYLRPNEEDEKKKHI 206
>gi|402077830|gb|EJT73179.1| hypothetical protein GGTG_10028 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 444
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 71/255 (27%)
Query: 149 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS-QNVIVYIESESDKKMLMKEVKDEQKID 207
TS Q LI ++ FK+ LR + C + + + +K L ++++D +
Sbjct: 215 LTSLQTRLIYQLLETDFKEYG-LRGKRKGDCLFMQITIKGADKYQEKTLSRQMRDRK--- 270
Query: 208 AEMSIKASIGFRHVIDLLSS---------------------------------EKK---- 230
++++ GFR+V + L+ EKK
Sbjct: 271 --LAVRHQTGFRYVFEALAGGDFAEEIDVQLLLEPGAHSQDKMDEMRRKLRSIEKKTKTR 328
Query: 231 --LIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 288
+++ HN LD+ +Y F G LP T +F + FP ++DTK ++
Sbjct: 329 ARVLILHNSLLDLCFLYQSFVGDLPRTLTQFKLDLQA-FPRLVDTKFMVTLGR------- 380
Query: 289 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFM 348
P I+LG L VK +E+ I + V HEAGYD+++
Sbjct: 381 ----------HEFDPDISLGQ------LYKMVK-NLELPLIAPPMPSIRVAHEAGYDSWL 423
Query: 349 TGCVFAQACSHLGID 363
T F + LG D
Sbjct: 424 TAVAFLKFSWKLGQD 438
>gi|405964428|gb|EKC29916.1| Poly(A)-specific ribonuclease PARN [Crassostrea gigas]
Length = 481
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 53/218 (24%)
Query: 147 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQK 205
NGF LI VR+ F+ +L + + + + I++E + KM K+++K
Sbjct: 157 NGFVRK---LIYQTVRQRFQSGVHLGAKTDEKKQRYIQVTRIKTEDEMKM-----KEQEK 208
Query: 206 IDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 264
AE++ ++ ++GF VI L+S +EF +
Sbjct: 209 QSAELAELEEAVGFTKVIRLISQS--------------------------NYQEFKAMAK 242
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
FP I+DTK++ N+ L P LG H+ +P E+
Sbjct: 243 CVFPKILDTKLMANTAPCKD----------------LLPSSVLGDLLNHINCKPFKPPEI 286
Query: 325 EV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
+ ++ + HEA YDA++TG F + LG
Sbjct: 287 VIPENFPQYKLDDSNLHEAAYDAYITGICFTAMSNFLG 324
>gi|71649058|ref|XP_813287.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70878157|gb|EAN91436.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 670
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 229 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 283
KK++V HN D+A + + P P T EF ++ + FP DT+ L L + IL
Sbjct: 417 KKILVIHNGLSDLAFLCAAMHQPPPETLCEFKRTIREMFPFFFDTRTLTCAPSLQNIGIL 476
Query: 284 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 340
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 477 TATLKKTYFTLLKRNKRIQLHCPS------SFEVAEQSEMK-----------------EH 513
Query: 341 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 366
+A DAFMTG +F A + +G DF++
Sbjct: 514 DAVIDAFMTGSLFLFAQEELAQVGSDFRR 542
>gi|403224141|dbj|BAM42271.1| uncharacterized protein TOT_040000640 [Theileria orientalis strain
Shintoku]
Length = 253
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 217 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF-PHIIDTKI 275
G H+I + + +V HN LDI H+Y KF GPLP E + ++F I DTK
Sbjct: 135 GLHHLIKSIIEYRIPLVFHNGMLDILHLYDKFIGPLPENPVEISREITRFFVGGIFDTKE 194
Query: 276 LLNSNSI 282
L SN I
Sbjct: 195 HLTSNVI 201
>gi|300120079|emb|CBK19633.2| unnamed protein product [Blastocystis hominis]
Length = 567
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 139/337 (41%), Gaps = 64/337 (18%)
Query: 30 TTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNST-----YEDESLDSWHSLKEI 84
+++DFL F F EG+ L + E+K L+H+ + Y+D+ KE
Sbjct: 117 ASTLDFLRNNHFKFGRLFSEGIPTLRKSDEEKILEHLRMSQDRYDYKDD--------KE- 167
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
R++ E + ++++ W+ + NRD +++ P+ + S ++
Sbjct: 168 RES----------MEPIFEQINSWIQAM--NRD--AQLSPNTDHSLAT---------ESL 204
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
L SH+ L+ V + L+ + +N + + ++ + + E+
Sbjct: 205 LLPPLNSHKRKLLYQEVSNRYPTLSLKELPEDNPSTGKI-------KRTRIFVTKQPSER 257
Query: 205 KIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 264
A + G R V++ + KK +VG D+ ++ + LP T EF+ +
Sbjct: 258 IEPAVPEVCQHAGVRRVVEAILESKKPLVGFQTMGDVMYMLGGIYKELPRTLPEFLEMM- 316
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
K ++D K ++ + ++ ++ +L+ A+ Q A K+ +P V+ V
Sbjct: 317 KEVELLVDLKEVVEMEGLKEEDIR--HCNLTHAY-----QQAEAWKNG----EPEVRRAV 365
Query: 325 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361
E + + H+A DA +TGC+F + G
Sbjct: 366 ENSEFTA--------HDAACDALITGCLFVKLLYRCG 394
>gi|260821597|ref|XP_002606119.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
gi|229291457|gb|EEN62129.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
Length = 490
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 297 AFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356
F L LG L +P KV V V + + +H+AGYDA++TG F
Sbjct: 209 PFKELVSNTTLGDLEATLGKEP-FKVPVIVFPEDFPGYETAQEHQAGYDAYITGRCFTIM 267
Query: 357 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 416
++LG FK QS L + L VN LYL + ++ N T + L N ++H
Sbjct: 268 ANYLG-KFKSQSKPA-LPGSALLEPFVNKLYLM----RVQDIPYVNLTGQDLKPN--RDH 319
Query: 417 YPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAE 472
V FP K+ D+ + + +GP I + +D+ + FV ++ +
Sbjct: 320 ---------VFHVTFPKEWKSNDLYQLF-RPFGP---IYIAWIDDVSAFVALNKKD 362
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 8 NFFIFQRQELPLDGAAYE--FLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF+IF R PL+ A + FLCQ +S+ FLA DFN +G+ YLS E +
Sbjct: 85 NFYIFPR---PLNRNAPDCRFLCQASSLHFLASQGMDFNKVFRDGIPYLSPVDEQQMRDT 141
Query: 66 VNSTYEDESLDS 77
++ + + L S
Sbjct: 142 LDQKHATQQLHS 153
>gi|389630114|ref|XP_003712710.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
gi|351645042|gb|EHA52903.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
Length = 426
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNS 281
++IVGHN D+ IY+ F G LP + ++F + FP +DTK + ++
Sbjct: 326 RVIVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYMATQDA 377
>gi|440469932|gb|ELQ39023.1| hypothetical protein OOU_Y34scaffold00516g58 [Magnaporthe oryzae
Y34]
gi|440483021|gb|ELQ63464.1| hypothetical protein OOW_P131scaffold00982g62 [Magnaporthe oryzae
P131]
Length = 582
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 230 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNS 281
++IVGHN D+ IY+ F G LP + ++F + FP +DTK + ++
Sbjct: 341 RVIVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYMATQDA 392
>gi|209875359|ref|XP_002139122.1| CCR4-NOT transcription complex subunit 8 protein [Cryptosporidium
muris RN66]
gi|209554728|gb|EEA04773.1| CCR4-NOT transcription complex subunit 8 protein, putative
[Cryptosporidium muris RN66]
Length = 272
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 56/135 (41%), Gaps = 37/135 (27%)
Query: 224 LLSSEKKLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSI 282
+L+S+ K I H C+ D A++ PLP T EFIS VN FP + D K +L
Sbjct: 144 ILNSKIKWISFHGCY-DFAYLIKILTCSPLPETESEFISLVNMLFPSLYDIKFVLK---- 198
Query: 283 LQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEA 342
Q + TSL K S HL +Q G+ H+A
Sbjct: 199 -QLTNLNNLTSLQKL-------------SEHLQIQ-----------------RIGIAHQA 227
Query: 343 GYDAFMTGCVFAQAC 357
G DA +T C F + C
Sbjct: 228 GSDALITCCTFFKLC 242
>gi|71404979|ref|XP_805146.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70868440|gb|EAN83295.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 229 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 283
KK++V HN D+A + + P P T EF ++ + FP DT+ L L + IL
Sbjct: 380 KKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREMFPFFFDTRTLTCAPSLQNIGIL 439
Query: 284 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 340
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 440 TATLKKTYFTLLKRNKRIQLHCPS------SFEVAEQSEMK-----------------EH 476
Query: 341 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 366
+A DAFMTG +F A + +G +F++
Sbjct: 477 DAVIDAFMTGSLFLFAQEELAQVGSNFRR 505
>gi|428184515|gb|EKX53370.1| hypothetical protein GUITHDRAFT_101074 [Guillardia theta CCMP2712]
Length = 479
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF+ F R+ LD FLCQ M FL+ DFN I G+SYL++++E+ + +
Sbjct: 98 YNFYTFPREFKGLD---RRFLCQAKCMSFLSSNCMDFNKLIKSGISYLNKQEEEFVRRGI 154
Query: 67 NS 68
+S
Sbjct: 155 SS 156
>gi|346971623|gb|EGY15075.1| hypothetical protein VDAG_06565 [Verticillium dahliae VdLs.17]
Length = 364
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
L +++ ++VGHN D+ +Y F G LP T F + FP IIDTK+L
Sbjct: 236 LRAKRPVLVGHNMVYDLTFLYDAFVGCLPATLAGFQFRLLAIFPRIIDTKVL 287
>gi|346472889|gb|AEO36289.1| hypothetical protein [Amblyomma maculatum]
Length = 450
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 218 FRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTKIL 276
R + LL +K IV HN F+D +Y F+ LP T + F++ +N+ FP + DTK +
Sbjct: 151 LRKLFSLLVVHRKPIVFHNGFMDTVFLYHSFYLALPPTLQTFLADLNELFPSRVYDTKFI 210
Query: 277 LNSNSIL 283
+ + L
Sbjct: 211 AETKASL 217
>gi|320586948|gb|EFW99611.1| caf1 family ribonuclease [Grosmannia clavigera kw1407]
Length = 361
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILL 277
L + ++VGHN +D+ +Y FF LP +F +++ FP I+DTK L+
Sbjct: 235 LKQRQPVLVGHNMLVDLCFLYRTFFETLPENLSDFSHKIHELFPRIVDTKNLV 287
>gi|302406542|ref|XP_003001107.1| predicted protein [Verticillium albo-atrum VaMs.102]
gi|261360365|gb|EEY22793.1| predicted protein [Verticillium albo-atrum VaMs.102]
Length = 447
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 225 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
L +++ ++VGHN D+ +Y F G LP T F + FP IIDTK+L
Sbjct: 313 LRAKRPVLVGHNMVYDLTFLYDAFVGCLPATLAGFQFRLLAIFPRIIDTKVL 364
>gi|241565990|ref|XP_002402057.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499948|gb|EEC09442.1| conserved hypothetical protein [Ixodes scapularis]
Length = 514
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 134/355 (37%), Gaps = 82/355 (23%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
+F Q +S++FL + FDFN C +EG+ Y D+A + Y ++ L+
Sbjct: 102 QFSVQASSIEFLCRNGFDFNKCFYEGLPY-----ADRACRRAIDGYVVDADLDDADLQP- 155
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 144
+ D++ W S D K K+ P
Sbjct: 156 ----------------LYDQVRRW----------------SAADCKDPL-----KVEPPA 178
Query: 145 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 204
LN L+ L ++ F ++A +S E + + + K +D+
Sbjct: 179 GLNPH------LVALDLKTRFPNVA-CTLSREG-------LVLTPVAAKPQRPSASRDDV 224
Query: 205 KIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 264
D+ + GF + L K +VGHN LD+ + +F PLP + F + +
Sbjct: 225 IRDSLL------GFSRCFETLVRSGKPLVGHNMLLDLLLLLHQFREPLPRSYARFKTVLG 278
Query: 265 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 324
FP + DTK + S S+ QQ L+ A L S ++ + + K++
Sbjct: 279 SLFPVVYDTKHI--SLSVRQQASPWLRELLTAA-----DLFTLHSALANVPVPFAPKIQG 331
Query: 325 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 379
+R+ H+AG DA++ G VF + L QQ++S A L
Sbjct: 332 APAVLRA--------HDAGSDAYVAGAVFIK----LAHVLAQQAASALPAPQRAL 374
>gi|452824550|gb|EME31552.1| hypothetical protein Gasu_12240 [Galdieria sulphuraria]
Length = 433
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 232 IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 276
I+ HN LD+A +YS F LP T+EEF+ ++++ P I DTK+L
Sbjct: 233 IILHNGLLDLAFLYSSFEENLPKTSEEFVRNLHQLLPCIYDTKLL 277
>gi|336470115|gb|EGO58277.1| hypothetical protein NEUTE1DRAFT_82678 [Neurospora tetrasperma FGSC
2508]
gi|350290191|gb|EGZ71405.1| hypothetical protein NEUTE2DRAFT_109890 [Neurospora tetrasperma
FGSC 2509]
Length = 499
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 98/267 (36%), Gaps = 72/267 (26%)
Query: 36 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 95
LA + FN GV YL+R + T E+ L W + K + D + +
Sbjct: 119 LATNGWGFNEAWERGVPYLTRWEAQ--------TVEERFLQPWETKKPL-DINKLDAESQ 169
Query: 96 LFAERMKDRLSEWLGG-LLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 154
F ++++ WL L NR Q F L
Sbjct: 170 KFRAWANEQITSWLKEERLTNRRIALTRQSGF---------------------------L 202
Query: 155 LLIQLVVRKHFKD-------LAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 207
+++ ++ HF + LAYL V +S SQ V + + ++ ++ ++
Sbjct: 203 YVVEALLGGHFANDIEPELCLAYLLVVDRDSRSQLVSAFRDR-------LRAAENRNRL- 254
Query: 208 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 267
R I L+ S+ ++ H YS F GPLP T + F ++ F
Sbjct: 255 -----------RRPILLIHSQLDML---------CHFYSTFLGPLPETLDGFTKEIHDIF 294
Query: 268 PHIIDTKILLNSNSILQQRMKKSSTSL 294
P I+D++IL N+ + TS+
Sbjct: 295 PRIVDSRILYPLNNYPSHSFDRHKTSI 321
>gi|303275732|ref|XP_003057160.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461512|gb|EEH58805.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 285
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYL 54
NF++F D +A F CQ +S+ FLA FDFN CI EGV Y+
Sbjct: 153 NFWLFPDHRALPDASA--FGCQASSLSFLANNGFDFNKCIREGVPYV 197
>gi|344240241|gb|EGV96344.1| Poly(A)-specific ribonuclease PARN [Cricetulus griseus]
Length = 367
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQE 59
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E+E
Sbjct: 28 NFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEE 78
>gi|157877855|ref|XP_001687225.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130300|emb|CAJ09612.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 510
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 36/169 (21%)
Query: 201 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
K+++++ E +GFR +L +K IVGHN DI + P+ EF
Sbjct: 222 KEKKRLQCERDRAEQLGFRQFWKILLQSRKPIVGHNFMQDIMFMVHMHEAPISHDYVEFK 281
Query: 261 SSVNKYFPHIIDTKILLNS------------NSILQQ---RMKKSSTSLSKAFSVLCPQI 305
+ + P I DTK + + Q+ R SS ++ + + P
Sbjct: 282 KVLQRTLPTIYDTKTMATKLTGGDAFPVTHLEPLYQECRCRAGLSSDQFTQEYRL--PPG 339
Query: 306 ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
G + + LQ HEA YDA+MTG F+
Sbjct: 340 FYGYNDSAVKLQSKA-------------------HEAAYDAYMTGIAFS 369
>gi|194382480|dbj|BAG64410.1| unnamed protein product [Homo sapiens]
Length = 207
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQE 59
+F+CQ++S+DFLA FDFN G+ YL++E+E
Sbjct: 88 KFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEE 122
>gi|401421012|ref|XP_003874995.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491231|emb|CBZ26497.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 510
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 20/161 (12%)
Query: 201 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
K+++++ E +GFR +L +K IVGHN D+ + PL EF
Sbjct: 222 KEKRRLQCERDRAQHLGFRQFWKILVQSRKPIVGHNFMQDVMFMVHMHETPLSQDYLEFK 281
Query: 261 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV--LCPQIALGSKSTHLALQP 318
+ + P I DTK + + + AF V L P + L+
Sbjct: 282 KVLQRTLPSIYDTKTM------------AAKLTGDDAFPVTHLEPLYQECRRRASLSSDQ 329
Query: 319 SVKVEVEVDDIRSSNWNSGVK-----HEAGYDAFMTGCVFA 354
+ E + +S VK HEA YDA+MTG F+
Sbjct: 330 FTQ-EYRLPPGFYGYNDSAVKQQSKAHEAAYDAYMTGIAFS 369
>gi|389594811|ref|XP_003722628.1| putative ribonuclease [Leishmania major strain Friedlin]
gi|323363856|emb|CBZ12862.1| putative ribonuclease [Leishmania major strain Friedlin]
Length = 677
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 228 EKKLIVGHNCFLDIAHIYSKFFGP--LPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ 285
++K IV +N + D+ + +GP +P F S V ++FP + DT++L + + Q
Sbjct: 442 QRKPIVFYNGYTDVMFLLLALYGPQNMPPNLSSFKSLVRRHFPSLFDTRVLSCAGPL--Q 499
Query: 286 RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG---VKHEA 342
+ + LS + A+G V D + S ++ V H A
Sbjct: 500 GLGNFTGKLSSVVDEMSKVSAIGP-----------HVSFSFDPLVSGGRDATQHLVAHNA 548
Query: 343 GYDAFMTGCVFAQA 356
+DA +TG +FA A
Sbjct: 549 AFDALLTGKLFAFA 562
>gi|85090827|ref|XP_958604.1| hypothetical protein NCU07559 [Neurospora crassa OR74A]
gi|28919979|gb|EAA29368.1| predicted protein [Neurospora crassa OR74A]
Length = 499
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 229 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNS 281
+ +++ H+ + H YS F GPLP T + F ++ FP I+D +IL N+
Sbjct: 256 RPILLIHSQLDMLCHFYSTFLGPLPETFDGFTKEIHNIFPRIVDNRILYPLNN 308
>gi|401429498|ref|XP_003879231.1| putative ribonuclease [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495481|emb|CBZ30786.1| putative ribonuclease [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 677
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 228 EKKLIVGHNCFLDIAHIYSKFFGP--LPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ 285
++K IV +N + D+ + +GP +P F S V ++FP + DT+IL S + Q
Sbjct: 442 QRKPIVFYNGYTDVMFLLLALYGPQNMPPDLSSFKSLVRRHFPSLFDTRILSCSGPL--Q 499
Query: 286 RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG---VKHEA 342
+ + LS SV+ + S H V D + S ++ V H A
Sbjct: 500 GLGNFTGKLS---SVVDEMSKVNSIGPH--------VSFNFDPLVSGGRDATQHLVAHNA 548
Query: 343 GYDAFMTGCVFAQA 356
+DA +TG +FA A
Sbjct: 549 AFDALLTGKLFAFA 562
>gi|342183685|emb|CCC93165.1| putative ribonuclease [Trypanosoma congolense IL3000]
Length = 623
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 229 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 288
+K ++ HN D+A + S LP T EF + ++ FP DT+ L S + Q +
Sbjct: 382 RKPVIVHNGLSDMAFLCSLLRKDLPDTLPEFKAFMHSAFPVFYDTRTLTCSPKL--QNIP 439
Query: 289 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFM 348
+ L K +++ L ++T + + ++ DI+ H + DAFM
Sbjct: 440 NLTGPLKKTYTI------LRERNTDVVMFDKRFRAIQNWDIKD--------HHSACDAFM 485
Query: 349 TGCVFA---QACSHLGIDFK 365
TG +FA Q + +G D++
Sbjct: 486 TGSLFAYVQQEFARVGADYR 505
>gi|427796785|gb|JAA63844.1| Putative caf1 family ribonuclease, partial [Rhipicephalus
pulchellus]
Length = 435
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 218 FRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTKIL 276
R + +L KK IV HN F+D +Y + LP + F++ +N FP I DTK +
Sbjct: 146 LRKLFSMLIVHKKPIVVHNGFMDAVFLYHSLYSALPPSLPTFLADLNDLFPGRIYDTKYI 205
Query: 277 LNSNSIL 283
+ + L
Sbjct: 206 AEAKASL 212
>gi|148670094|gb|EDL02041.1| mCG121400, isoform CRA_b [Mus musculus]
Length = 207
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 84 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKH 137
>gi|148670093|gb|EDL02040.1| mCG121400, isoform CRA_a [Mus musculus]
Length = 280
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH 143
>gi|74137718|dbj|BAE24048.1| unnamed protein product [Mus musculus]
Length = 189
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 18 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKH 71
>gi|149027455|gb|EDL83045.1| rCG44902 [Rattus norvegicus]
Length = 273
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKH 143
>gi|344249632|gb|EGW05736.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 433
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDK 61
NFF+F LD EF Q +S+ FL +Y FD+N + G+ Y++ EQE K
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK 140
>gi|406859963|gb|EKD13024.1| CAF1 family ribonuclease [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 484
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 31/168 (18%)
Query: 251 PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK 310
PLP EF ++ KYFP I D K L+ + +I Q M +++ ++ VL K
Sbjct: 297 PLPDDEFEFDVNMKKYFPSIYDIKYLMKA-AIRQHTMGQATPLDPQSAEVLQ---KFEQK 352
Query: 311 STHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL---------- 360
S AL S+K++ + G H+AG D+ +TG VF + +
Sbjct: 353 SGLEALAESLKIKRQ-----------GFAHQAGSDSLLTGKVFFRIREKIFNGEISDEHD 401
Query: 361 ----GIDFKQQS-SSENLAHNE-KLREHVNLLYLSWTNGEIINLSTGN 402
G+ F + S+ ++ HN + +E+V +TNG +TGN
Sbjct: 402 GKVWGLGFPEYVISNAHIQHNNYQQQENVTPGQNGYTNGTPSTPNTGN 449
>gi|318103402|ref|NP_001187747.1| cell differentiation protein rcd1-like protein [Ictalurus
punctatus]
gi|308323867|gb|ADO29069.1| cell differentiation protein rcd1-like protein [Ictalurus
punctatus]
Length = 297
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 12 FQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACI-HEGVSYLSREQEDKALKHVNSTY 70
F Q++ LD ++CQT +F A I + V LS+E + LKHV Y
Sbjct: 182 FILQKILLDDTGLAYICQTYE-------RFSHVAMILGKMVLQLSKEPSARLLKHVVRCY 234
Query: 71 EDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLS--EWLGGLLRNRDEGSEVQP 124
S D+ + + +R + D FA+ +KD + WL L++NR EG P
Sbjct: 235 LRLS-DNSRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNRQEGQVTDP 289
>gi|71745898|ref|XP_827574.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70831739|gb|EAN77244.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 623
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 229 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 288
+K +V HN D+A + P EF V + FP DT+ L + S+ Q +
Sbjct: 378 RKPLVIHNGLSDLAFLCCLMHKEPPQNIVEFKRLVREVFPVFYDTRTLTCAPSL--QSII 435
Query: 289 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAF 347
+ L K + +L Q + V++ D + + + G K H+A +DAF
Sbjct: 436 GLTGPLMKTYLILSEQ--------------NKTVDIYHDAANNFSTDGGPKEHDAAWDAF 481
Query: 348 MTGCVFA---QACSHLGIDFKQ 366
MTG +FA Q + + D+++
Sbjct: 482 MTGSLFAFAQQELAQVNADYRR 503
>gi|149610539|ref|XP_001516344.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Ornithorhynchus anatinus]
Length = 296
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQE 59
NF++F + P + + +F+CQ++S+ FLA FDFN G+ YL++E+E
Sbjct: 97 NFYVFPK---PFNRTSPDVKFVCQSSSIVFLANQGFDFNKVFRCGIPYLNQEEE 147
>gi|351703955|gb|EHB06874.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Heterocephalus glaber]
Length = 466
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NFF+F LD EF Q +S+ FL +Y F++N + +G+ Y++ EQE K +KH
Sbjct: 90 NFFLFPTTFGILDT---EFSFQASSVQFLNQYGFNYNKFLKKGIPYMNEEQEKK-IKH 143
>gi|167525212|ref|XP_001746941.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774721|gb|EDQ88348.1| predicted protein [Monosiga brevicollis MX1]
Length = 977
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 219 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 274
R V + L IV HN LD+ +Y + LP T + F++ ++ F +IDTK
Sbjct: 717 RRVFEALIQSTAPIVTHNGLLDLCFLYQHLWADLPATLDVFVADCSQLFGRVIDTK 772
>gi|14388565|dbj|BAB60801.1| hypothetical protein [Macaca fascicularis]
Length = 300
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NFF+F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 90 NFFLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH 143
>gi|443696035|gb|ELT96816.1| hypothetical protein CAPTEDRAFT_205148 [Capitella teleta]
Length = 316
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 282 ILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHE 341
IL+ K+ + A P + +G A + SVK+E V H
Sbjct: 199 ILEGEHKQKKKRKTIAMETSDPPLPVGG-----ANEGSVKLEARVRG-----------HR 242
Query: 342 AGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTG 401
AG+DAFMTG +FA C+ G + + E+ + +E+ N L+LS + + L +G
Sbjct: 243 AGFDAFMTGFIFAFFCARYG----ESNGKESFIDSVGFQEYRNKLFLSGKDIPLQVLKSG 298
>gi|294947177|ref|XP_002785271.1| hypothetical protein Pmar_PMAR016656 [Perkinsus marinus ATCC 50983]
gi|239899017|gb|EER17067.1| hypothetical protein Pmar_PMAR016656 [Perkinsus marinus ATCC 50983]
Length = 132
Score = 39.7 bits (91), Expect = 4.6, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 150 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 209
++ Q LL+ V+ + +L + + ++VY + + +KE++++ +
Sbjct: 41 SAFQRLLMHSVIAAEYPNLYSYSSRRASDGERMLVVYRSQDQLYETQIKEIEEDLQ---- 96
Query: 210 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
+G R ++D ++ K+IVGHNCFLD+ H
Sbjct: 97 -QTTVQVGVRSLLD--AAADKVIVGHNCFLDVLH 127
>gi|405977745|gb|EKC42179.1| Target of EGR1 protein 1 [Crassostrea gigas]
Length = 319
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 214 ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIID 272
+S+ R +L +K +V HN D+ ++Y F+ LP T FI+ + + F + D
Sbjct: 168 SSMCLRSFFTVLVKSRKPVVFHNALTDLVYLYQNFYASLPPTMSSFIADLTEIFEGGVYD 227
Query: 273 TKILLN 278
TK + +
Sbjct: 228 TKYITD 233
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,083,279,303
Number of Sequences: 23463169
Number of extensions: 367603705
Number of successful extensions: 928472
Number of sequences better than 100.0: 427
Number of HSP's better than 100.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 927290
Number of HSP's gapped (non-prelim): 771
length of query: 605
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 456
effective length of database: 8,863,183,186
effective search space: 4041611532816
effective search space used: 4041611532816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)