BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007386
(605 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN
PE=1 SV=2
Length = 689
Score = 627 bits (1616), Expect = e-178, Method: Compositional matrix adjust.
Identities = 310/535 (57%), Positives = 403/535 (75%), Gaps = 10/535 (1%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
HNFF+F RQEL D A+EFLCQTTSMDFLAKYQFDFN CIHEG+SYLSR +E++A K +
Sbjct: 124 HNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRREEEEASKRL 183
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ ++ +DS +E++ L + D+LFA RM+ L+EW GLL + SE
Sbjct: 184 KMLHGEDGIDSSGETEELK---LVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRIS 240
Query: 127 NDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVY 186
N S Q ET+F MRPA+SL GFTSHQL ++ V+RKHF DL Y+ + ++S S++++VY
Sbjct: 241 NGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVY 300
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
+S+SDK+ LMKE KDE+K AE I+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YS
Sbjct: 301 TDSDSDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYS 360
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KF GPLP TAE+F++S+N +FP+I+DTKILLN N +L QRMKKSSTSLS AFS LCPQI
Sbjct: 361 KFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIE 420
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
S+S+ LQ V ++VE+D++R SNWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ
Sbjct: 421 FSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQ 480
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S ++ A NEKL +++N LYLSWT G+II+L TG+ +++ +K K +E IV
Sbjct: 481 HSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLRTGHSNADNWRVSKFK-------YENIV 533
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 486
++W FP LKA I+ECI K +G SV SVYHVD++AVFV F +E+V FL LK L+
Sbjct: 534 LIWNFPRKLKARGIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLES 593
Query: 487 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTK 541
++ P+SVLHPL+K+LEGGNT AA YE YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 594 SDGPVSVLHPLSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRTR 648
>sp|Q8W4C3|PARNL_ARATH Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana
GN=At3g25430 PE=2 SV=1
Length = 618
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 140/563 (24%), Positives = 246/563 (43%), Gaps = 100/563 (17%)
Query: 7 HNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV 66
+NF +F R EL +Y F CQ + + +A+ FDFN CI+EG+SYLSR QE +
Sbjct: 110 YNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLS 169
Query: 67 NSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF 126
+ +S+ S + DT +F R++ R+ W + D GS+
Sbjct: 170 ENPILADSVTVSSSPATVADT--------VFVGRIRSRVKNWRQSCI---DSGSKTGD-- 216
Query: 127 NDSKQQFETIF-----FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQ 181
+D + + R ++++ + Q+ LI ++ + D+ L V+ ++ +Q
Sbjct: 217 DDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQ 276
Query: 182 NV-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
V V++ S+ DK + +E+KD +K + + GFR V+D +SS +K +V N D
Sbjct: 277 AVRTVFMSSKEDKDLFKRELKDLEKEEN----RRVRGFREVVDFISSSQKPVVSQNYLSD 332
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ--RMKKSSTSLSKAF 298
I++KF GPLP ++F SS++ FP+++D + S L + + +SL++ F
Sbjct: 333 FTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFF 392
Query: 299 SVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY-----DAFMTGCVF 353
+ V+VEV +N VK + G+ +A M +F
Sbjct: 393 A---------------------PVDVEV-----ANQGCPVKLDEGHQSHGQNAVMISQLF 426
Query: 354 AQACSHLGIDFKQQSSSEN---LAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLAS 410
A+ C+ D S+E+ LA + EH N + N N+ ++ S ++S
Sbjct: 427 AKLCTIQKSDLSTIQSNEDFQALASD----EHANSVTSCSKNAGDENVKVWSKNSRRVSS 482
Query: 411 NKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV--ISVYHVDETAVFVQF 468
E +V +WG + A ++ + K + P V ++D ++ + F
Sbjct: 483 ------------ENLVFIWGLGKKMTAAKLKNVLQKSH-PVFAREFDVKYIDRSSAILVF 529
Query: 469 SRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFA 528
+ FL + ++ + S+ +A+ L G A YETYK C ++ F
Sbjct: 530 WESGPSETFLSAVNNEEQLDG--SLREMVAEGLRG-----AGYETYKRAC-----RLGF- 576
Query: 529 DQAKAVGIKWKTKLVESSDKTKE 551
W+ L ES DK E
Sbjct: 577 ---------WEADLAESLDKALE 590
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 199/475 (41%), Gaps = 81/475 (17%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE----RVLR 143
Query: 68 STYEDESLDSWHS-----LKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEV 122
YED S + + +IPD + D++ E + L+N + V
Sbjct: 144 DQYEDRRSQSNGASTMSYISPNSSKTPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNV 201
Query: 123 QPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQ 181
+P T +Q LI Q + K+ + + V E
Sbjct: 202 EPC------------------------TGYQRKLIYQTLNWKYPRGIHVETVESEKKERY 237
Query: 182 NVIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240
VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN LD
Sbjct: 238 IVISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLD 291
Query: 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300
+ H +FF LP EF N FP ++DTK++ ++N F
Sbjct: 292 VMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKE 335
Query: 301 LCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359
+ +L L P +V+ + +S N S HEAGYDA++TG F ++
Sbjct: 336 IIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQLHEAGYDAYITGLCFISMANY 395
Query: 360 LGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPK 419
LG F ++ +R N L+L I+++ N L KR N
Sbjct: 396 LG-SFLSPPKDYVSCRSKIVRPFFNKLFLM----RIMDIPYLNLEGPDLQP-KRDN---- 445
Query: 420 ILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 446 ------VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>sp|Q7ZU92|PARN_DANRE Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2
Length = 660
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 198/468 (42%), Gaps = 68/468 (14%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF+IF + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYIFPK-PFSRTSPDIKFICQSSSIDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYE 147
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
+ S T + N+P+ + E + LL+N D+ +++P
Sbjct: 148 ERRGQMNGAGPVSYTPPSGTGVCNVPED--QREFIRSVEEKVEALLKNTDQTLDLEP--- 202
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYI 187
GF + L+ Q + K+ K L V + + + I
Sbjct: 203 ------------------CTGF--QRKLIYQTLNSKYSKGL---HVEALETEKKERFIQI 239
Query: 188 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 247
D++ +E + +Q+ + + ++GF VI +S KL+VGHN LD+ H +
Sbjct: 240 SKVDDEERRRREQQKQQR--EQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQ 297
Query: 248 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 307
F GPLP ++F FP ++DTK++ + ++ F + +L
Sbjct: 298 FCGPLPEELDDFKEVAMTVFPRLLDTKLMAS----------------TQPFKEIIHNTSL 341
Query: 308 GSKSTHLALQPSVKVEVEVDD-IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 366
L +P E + ++S + ++ HEAGYDAF+TG F ++LG F
Sbjct: 342 AELHKQLRQKPFRPPTTECPEGLQSYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLT 400
Query: 367 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 426
S A ++ L N L+L +I++ N + L +++H V
Sbjct: 401 PPKSHISARSKLLEPFYNKLFLM----RVIDIPYLNMSGPDL--QPKRDH---------V 445
Query: 427 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
+ FP K D+ + S +G I V VD+T+ FV S+ E V
Sbjct: 446 LYVTFPKEWKTSDLYQLFS-AFG---NIQVSWVDDTSAFVSLSQTEQV 489
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2
Length = 638
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 199/471 (42%), Gaps = 72/471 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHL-FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 124
+ + S + IPD ++ D++ E + LL++ + +
Sbjct: 146 YDEKRSQSNGAGALSYTSPNTSKCPVTIPDD--QKKFIDQVVEKIEDLLQSEENKN---- 199
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
+ P GF + L+ Q + K+ K + + E VI
Sbjct: 200 -------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 241
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 242 SKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 296
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 297 VHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINN 340
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 341 TSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-S 399
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
F S A ++ + N L+L ++++ N L +++H
Sbjct: 400 FLSPPKSHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 446
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>sp|Q5RC51|PARN_PONAB Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2
SV=1
Length = 639
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 198/472 (41%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + + +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSPPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 199/472 (42%), Gaps = 74/472 (15%)
Query: 8 NFFIFQRQELPLDGAA--YEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 65
NF++F + P + ++ +F+CQ++S+DFLA FDFN G+ YL++E+E + +
Sbjct: 89 NFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145
Query: 66 VNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQ 123
+ E S + + P + ++ K D++ E + LL++ + +
Sbjct: 146 YD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN--- 199
Query: 124 PSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV 183
+ P GF + L+ Q + K+ K + + E V
Sbjct: 200 --------------LDLEPC---TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIV 240
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 243
I ++ E K+ ++ EQ+ + ++GF VI +++ KL++GHN LD+ H
Sbjct: 241 ISKVDEEERKRREQQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 244 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIIN 339
Query: 304 QIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 362
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 340 NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG- 398
Query: 363 DFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILF 422
F A ++ + N L+L ++++ N L +++H
Sbjct: 399 SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------ 446
Query: 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 447 ---VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>sp|Q8VDG3|PARN_MOUSE Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1
SV=1
Length = 624
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 196/471 (41%), Gaps = 79/471 (16%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F + +F+CQ++S+DFLA FDFN G+ YL++E E++ L+
Sbjct: 89 NFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQE-EERQLR--- 143
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGS-EVQP 124
E D S L P + ++ K D++ E + L++ ++ S E+ P
Sbjct: 144 -----EQFDEKRSQANGAGA-LAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDP 197
Query: 125 SFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI 184
GF + L+ Q + K+ K + + + VI
Sbjct: 198 ---------------------CTGF--QRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 234
Query: 185 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHI 244
++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H
Sbjct: 235 SKVDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHT 289
Query: 245 YSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 304
+F+ PLP EF FP ++DTK++ + ++ F +
Sbjct: 290 IHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINN 333
Query: 305 IALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 363
+L L P +VE + S + S HEAGYDA++TG F ++LG
Sbjct: 334 TSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSL 393
Query: 364 FKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFE 423
+ A ++ + N L+L ++++ N L +++H
Sbjct: 394 LSPPKMCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH------- 439
Query: 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 440 --VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 484
>sp|Q5R6R6|PNDC1_PONAB Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Pongo abelii GN=PNLDC1 PE=2 SV=1
Length = 520
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 79 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 132
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D ++ WL L + D
Sbjct: 133 ----DILTGNW----RVRSS-----PDKDQIKVVIDEVTRWLD-LAKEGD---------- 168
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 169 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 206
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 207 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHE 266
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LSK + VL +
Sbjct: 267 KFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSKVYEVLNSDLN 324
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 325 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368
>sp|Q8NA58|PNDC1_HUMAN Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Homo sapiens GN=PNLDC1 PE=2 SV=2
Length = 520
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 65/354 (18%)
Query: 8 NFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVN 67
NF++F LD EF Q +S+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 79 NFYLFPTTFGILDS---EFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH-- 132
Query: 68 STYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFN 127
D +W +R + PD + + D ++ WL L + D
Sbjct: 133 ----DILTGNW----RVRSS-----PDKDQIKVVIDEVTRWLE-LAKEGD---------- 168
Query: 128 DSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVY 186
++L G T Q +QLV+R+ ++ L+ G V+V
Sbjct: 169 ---------------WMTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVK 206
Query: 187 IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYS 246
S+ + L D + E + ++ GF +L +K +VGHN +D+ H++
Sbjct: 207 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 266
Query: 247 KFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA 306
KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL +
Sbjct: 267 KFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN 324
Query: 307 LGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360
+K++ + + + E V+ + HEA YDAF+ G V + +HL
Sbjct: 325 -PTKNSGPEIVHASRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 44/335 (13%)
Query: 25 EFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEI 84
+F + +S+ FL + FDFN + EGV YLSR +E + VN D D S+ +
Sbjct: 100 DFCSEASSIKFLIQQGFDFNKQLTEGVPYLSRIEERNLIDKVNERSTD---DLTSSILDA 156
Query: 85 RDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFK-MRPA 143
D +IL R +++ WL L S + SK T + +R A
Sbjct: 157 CDE------EILVDAR--NQIKNWLSSEL-----------SHSTSKYLNITTSNRFIRKA 197
Query: 144 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRV--SGENSCSQNVIVYIESESDKKMLMKEVK 201
I L+ I+ K + +L+V + ENS +Q S + K L +++
Sbjct: 198 I-------QSLVKIEFPTLKSYPKRTFLQVRKAIENSTTQC------SATSKSELKEDIA 244
Query: 202 DEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 260
+Q I ++ IK ++G RH+ D + +KK +V HN D+ +++S F G +P T EF
Sbjct: 245 SDQLILNNLNLIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYLFSLFEGKVPETILEFS 304
Query: 261 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS-VLCPQIALGSKSTHLALQPS 319
F I DTK+L + LQ T L S + P + S S + +
Sbjct: 305 ELCLSSFKSIYDTKLLYLKSDDLQHVSDGIPTDLLSLVSKISLPPVPSNSSSQRSNVSLN 364
Query: 320 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354
+E + S HEAG D++ T +F
Sbjct: 365 SLIECPYKSMMSRKR----PHEAGKDSYDTALLFV 395
>sp|P61708|SYA_TREDE Alanine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=alaS PE=3 SV=1
Length = 600
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 142 PAISLNGFTSHQLLLIQLVVR--KHFKDLA----YLRVSGENSCSQNVIVYIESESDKKM 195
P +L +L +L+ R +H K L +L V +QN Y E + ++ +
Sbjct: 297 PKTTLPSNIGAGYVLRRLIRRAVRHGKKLGIDGNFLSVPASAVIAQNAGFYTELKENETL 356
Query: 196 LMKEVKDEQKIDAEMSIKASIGFRHVI-DLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPL 254
++ E+K E+ E K F ++ +LL + KK+I G F +Y + P+ L
Sbjct: 357 ILTELKAEEDKFLETLKKGEAEFEKMLPNLLKNPKKIIPGRMAF----KLYDTYGFPIEL 412
Query: 255 TAE 257
T E
Sbjct: 413 TEE 415
>sp|P36431|SYP_CHLTR Proline--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=proS PE=3 SV=2
Length = 581
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 43 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 99
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 100 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|B0BC28|SYP_CHLTB Proline--tRNA ligase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=proS PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 43 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 99
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 100 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|B0B7W3|SYP_CHLT2 Proline--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=proS PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 43 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 99
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 100 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|Q3KLW0|SYP_CHLTA Proline--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=proS PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 43 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 99
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 100 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 143
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|A7TL17|YD156_VANPO WD repeat-containing protein Kpol_530p43 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_530p43
PE=3 SV=1
Length = 536
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 381 EHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECI-------VIVWGFPS 433
E+ N+L ++ +GE +N+ + E ++SN R+ KI I +
Sbjct: 312 ENPNVLLMTTLSGEFVNIDLREKIGEQISSNLRRLSDKKIGSFSINPNRPYEIATGSLDR 371
Query: 434 HLKAWDIRECISKV-------YGPTSVISVY 457
LK WDIR+ + K Y ++SVY
Sbjct: 372 TLKIWDIRKLVKKPEWSQYEDYDSCEIVSVY 402
>sp|P23647|FUSED_DROME Serine/threonine-protein kinase fused OS=Drosophila melanogaster
GN=fu PE=1 SV=2
Length = 805
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 32/229 (13%)
Query: 184 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSS-EKK---LIVGHNCFL 239
+V I+ S + KE+K+ ++ E I+A + HVI+++ S E K +V +
Sbjct: 29 VVAIKVISKRGRATKELKNLRR---ECDIQARLKHPHVIEMIESFESKTDLFVVTEFALM 85
Query: 240 DIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 299
D+ H Y + G + EE V H++ L+SN IL + +K + L K
Sbjct: 86 DL-HRYLSYNGAM---GEEPARRVTG---HLVSALYYLHSNRILHRDLKPQNVLLDKNMH 138
Query: 300 V------LCPQIALGS------KSTHLALQPSVKVEVEVDDIRSSNWNSG-VKHE--AGY 344
L + LG+ K T L + P + E D + W+ G + +E AG
Sbjct: 139 AKLCDFGLARNMTLGTHVLTSIKGTPLYMAPELLAEQPYDH-HADMWSLGCIAYESMAGQ 197
Query: 345 DAFMTGCV--FAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 391
F + + H + + +SE + + L E L +SWT
Sbjct: 198 PPFCASSILHLVKMIKHEDVKWPSTLTSECRSFLQGLLEKDPGLRISWT 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,331,976
Number of Sequences: 539616
Number of extensions: 8877644
Number of successful extensions: 23504
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 23465
Number of HSP's gapped (non-prelim): 38
length of query: 605
length of database: 191,569,459
effective HSP length: 123
effective length of query: 482
effective length of database: 125,196,691
effective search space: 60344805062
effective search space used: 60344805062
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)