Query 007386
Match_columns 605
No_of_seqs 199 out of 423
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 00:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d45_A Poly(A)-specific ribonu 100.0 2.4E-81 8E-86 693.5 26.9 411 1-483 84-495 (507)
2 2a1r_A Poly(A)-specific ribonu 100.0 6.7E-69 2.3E-73 583.1 17.2 341 2-391 83-427 (430)
3 4gmj_B CCR4-NOT transcription 99.9 2.6E-27 8.8E-32 243.8 10.2 109 232-389 153-262 (285)
4 2p51_A SPCC18.06C protein; DED 99.9 6.5E-27 2.2E-31 243.5 11.0 110 230-389 162-272 (333)
5 2d5r_A CCR4-NOT transcription 99.9 8.3E-27 2.8E-31 236.1 10.4 95 230-361 141-236 (252)
6 1uoc_A POP2; hydrolase, DEDD n 99.9 3.7E-26 1.3E-30 235.0 12.6 120 230-388 156-284 (289)
7 1whv_A Poly(A)-specific ribonu 99.5 9E-14 3.1E-18 120.4 8.0 68 395-482 3-70 (100)
8 3ctr_A Poly(A)-specific ribonu 99.3 9.9E-13 3.4E-17 114.3 6.0 57 422-482 4-60 (101)
9 1ug8_A Poly(A)-specific ribonu 99.0 6.4E-10 2.2E-14 94.5 7.7 71 93-191 8-79 (87)
10 2gui_A DNA polymerase III epsi 96.6 0.01 3.5E-07 56.4 10.4 102 212-358 76-183 (194)
11 1zbh_A 3'-5' exonuclease ERI1; 96.2 0.018 6.1E-07 59.1 10.2 105 211-360 146-263 (299)
12 1w0h_A 3'-5' exonuclease ERI1; 96.1 0.016 5.6E-07 55.3 8.7 104 212-360 79-195 (204)
13 1wlj_A Interferon stimulated g 96.0 0.011 3.7E-07 56.4 6.7 101 215-361 67-170 (189)
14 2p1j_A POLIII, DNA polymerase 95.8 0.033 1.1E-06 52.8 9.6 98 212-359 73-175 (186)
15 3v9w_A Ribonuclease T; DEDD nu 95.6 0.027 9.1E-07 55.3 7.9 85 228-360 133-221 (235)
16 2dhg_A TRNA selenocysteine ass 95.5 0.071 2.4E-06 45.0 9.4 61 422-484 8-74 (104)
17 1zbu_A ERI-1 homolog, 3'-5' ex 95.5 0.042 1.5E-06 57.8 9.5 104 212-360 197-313 (349)
18 1x4c_A Splicing factor, argini 95.3 0.06 2.1E-06 46.1 8.5 58 423-483 15-72 (108)
19 2f96_A Ribonuclease T; RNAse, 95.2 0.038 1.3E-06 53.9 7.5 85 228-360 125-213 (224)
20 2dnq_A RNA-binding protein 4B; 95.1 0.11 3.6E-06 42.8 9.1 57 424-484 9-65 (90)
21 2dgt_A RNA-binding protein 30; 95.1 0.09 3.1E-06 43.5 8.6 57 423-483 10-66 (92)
22 2dnm_A SRP46 splicing factor; 95.1 0.066 2.3E-06 45.2 7.8 60 422-484 12-78 (103)
23 2cqc_A Arginine/serine-rich sp 95.1 0.093 3.2E-06 43.3 8.6 59 422-483 14-79 (95)
24 1x5s_A Cold-inducible RNA-bind 95.0 0.12 4E-06 43.5 9.3 59 423-484 12-77 (102)
25 1x5u_A Splicing factor 3B subu 95.0 0.089 3E-06 44.4 8.5 59 423-484 15-80 (105)
26 2ytc_A PRE-mRNA-splicing facto 95.0 0.056 1.9E-06 43.8 6.8 55 424-481 13-68 (85)
27 3u3y_B Three prime repair exon 94.9 0.054 1.8E-06 56.3 8.2 89 230-360 119-215 (314)
28 2dnp_A RNA-binding protein 14; 94.9 0.09 3.1E-06 43.3 8.1 56 424-483 10-65 (90)
29 1s79_A Lupus LA protein; RRM, 94.8 0.11 3.7E-06 44.7 8.7 54 423-479 11-70 (103)
30 2cph_A RNA binding motif prote 94.7 0.11 3.9E-06 43.8 8.5 58 423-483 15-81 (107)
31 1why_A Hypothetical protein ri 94.7 0.13 4.4E-06 42.9 8.6 58 423-483 17-75 (97)
32 3mxm_B Three prime repair exon 94.7 0.083 2.8E-06 52.5 8.6 88 230-360 119-215 (242)
33 2lkz_A RNA-binding protein 5; 94.7 0.042 1.4E-06 46.8 5.5 62 422-484 8-76 (95)
34 3bs9_A Nucleolysin TIA-1 isofo 94.6 0.11 3.7E-06 42.2 7.8 57 424-483 7-70 (87)
35 2dgo_A Cytotoxic granule-assoc 94.6 0.14 5E-06 43.9 8.9 58 423-483 15-79 (115)
36 3beg_B Splicing factor, argini 94.6 0.1 3.4E-06 45.5 7.9 59 423-484 16-74 (115)
37 2dgv_A HnRNP M, heterogeneous 94.6 0.18 6.2E-06 41.3 9.1 58 424-484 9-71 (92)
38 2dnz_A Probable RNA-binding pr 94.6 0.16 5.4E-06 41.9 8.8 58 424-484 6-70 (95)
39 2do4_A Squamous cell carcinoma 94.5 0.14 4.7E-06 42.9 8.3 58 423-483 17-80 (100)
40 2dnh_A Bruno-like 5, RNA bindi 94.4 0.21 7.1E-06 42.1 9.3 59 423-484 15-79 (105)
41 2kvi_A Nuclear polyadenylated 94.3 0.19 6.6E-06 41.9 8.8 57 423-483 10-67 (96)
42 1p27_B RNA-binding protein 8A; 94.2 0.22 7.7E-06 42.0 9.2 58 423-483 23-87 (106)
43 1x4a_A Splicing factor, argini 94.2 0.12 4E-06 44.1 7.4 59 422-483 21-83 (109)
44 2e5j_A Methenyltetrahydrofolat 94.2 0.26 9E-06 41.1 9.4 60 423-484 19-79 (97)
45 2cqi_A Nucleolysin TIAR; RNA r 94.2 0.19 6.3E-06 42.3 8.5 58 423-483 15-77 (103)
46 2jrs_A RNA-binding protein 39; 94.2 0.34 1.2E-05 41.6 10.3 58 424-484 27-91 (108)
47 2cpz_A CUG triplet repeat RNA- 94.1 0.15 5.2E-06 43.9 8.0 57 424-483 26-89 (115)
48 2kt5_A RNA and export factor-b 94.1 0.2 6.9E-06 43.7 9.0 60 422-484 34-99 (124)
49 2d9p_A Polyadenylate-binding p 94.1 0.16 5.6E-06 42.7 8.0 59 423-484 15-78 (103)
50 1whw_A Hypothetical protein ri 94.1 0.14 4.7E-06 42.8 7.4 57 424-483 9-72 (99)
51 2ywk_A Putative RNA-binding pr 94.1 0.18 6E-06 41.7 8.1 58 423-483 16-79 (95)
52 1wex_A Hypothetical protein (r 94.1 0.19 6.6E-06 43.3 8.5 58 423-483 15-73 (104)
53 3ulh_A THO complex subunit 4; 94.0 0.16 5.6E-06 42.9 7.9 59 422-483 28-92 (107)
54 2e44_A Insulin-like growth fac 94.0 0.15 5.2E-06 42.2 7.6 58 423-483 15-76 (96)
55 3s7r_A Heterogeneous nuclear r 94.0 0.16 5.5E-06 41.3 7.6 55 423-480 11-72 (87)
56 2dgp_A Bruno-like 4, RNA bindi 94.0 0.23 8E-06 41.8 8.8 58 423-483 13-77 (106)
57 2cq3_A RNA-binding protein 9; 94.0 0.23 7.9E-06 41.7 8.7 58 423-483 15-77 (103)
58 3p5t_L Cleavage and polyadenyl 94.0 0.13 4.3E-06 42.5 6.9 58 426-484 4-68 (90)
59 2cq0_A Eukaryotic translation 94.0 0.13 4.5E-06 43.3 7.1 58 423-483 15-79 (103)
60 2e5h_A Zinc finger CCHC-type a 94.0 0.15 5E-06 42.1 7.3 58 423-483 16-80 (94)
61 2fy1_A RNA-binding motif prote 93.9 0.2 6.7E-06 43.7 8.4 57 424-483 8-70 (116)
62 2hvz_A Splicing factor, argini 93.9 0.21 7.2E-06 41.8 8.4 56 426-484 3-60 (101)
63 2dgs_A DAZ-associated protein 93.9 0.25 8.5E-06 41.2 8.7 57 423-483 10-73 (99)
64 3lqv_A PRE-mRNA branch site pr 93.9 0.26 8.8E-06 42.3 9.0 58 423-483 8-69 (115)
65 2kxn_B Transformer-2 protein h 93.8 0.17 5.8E-06 45.1 8.0 58 423-483 46-110 (129)
66 3md1_A Nuclear and cytoplasmic 93.8 0.18 6.1E-06 40.5 7.4 56 425-483 3-65 (83)
67 3ex7_B RNA-binding protein 8A; 93.8 0.19 6.5E-06 43.9 8.1 59 423-484 22-87 (126)
68 2ad9_A Polypyrimidine tract-bi 93.8 0.18 6E-06 45.0 7.9 57 423-482 31-88 (119)
69 2cpd_A Apobec-1 stimulating pr 93.8 0.29 1E-05 40.9 8.9 59 423-483 15-73 (99)
70 4a8x_A RNA-binding protein wit 93.8 0.14 4.9E-06 41.4 6.8 57 424-483 5-69 (88)
71 1oo0_B CG8781-PA, drosophila Y 93.8 0.17 5.8E-06 43.1 7.5 58 423-483 26-90 (110)
72 2xri_A ERI1 exoribonuclease 3; 93.8 0.12 4.1E-06 50.4 7.4 103 211-359 97-213 (224)
73 3ucg_A Polyadenylate-binding p 93.7 0.19 6.4E-06 40.9 7.5 56 424-483 7-69 (89)
74 2cqd_A RNA-binding region cont 93.7 0.18 6.3E-06 43.4 7.7 58 423-483 17-81 (116)
75 2la4_A Nuclear and cytoplasmic 93.7 0.22 7.4E-06 41.8 8.0 57 424-483 28-85 (101)
76 2jvo_A Nucleolar protein 3; nu 93.7 0.19 6.6E-06 43.2 7.8 57 423-483 31-87 (108)
77 2cpj_A Non-POU domain-containi 93.7 0.24 8.2E-06 41.4 8.2 59 423-484 15-74 (99)
78 2x1f_A MRNA 3'-END-processing 93.6 0.16 5.6E-06 42.2 7.1 57 424-483 3-66 (96)
79 1y97_A Three prime repair exon 93.6 0.16 5.4E-06 49.7 8.0 87 230-360 114-210 (238)
80 4f25_A Polyadenylate-binding p 93.6 0.18 6E-06 43.8 7.5 56 425-483 7-67 (115)
81 1uaw_A Mouse-musashi-1; RNP-ty 93.5 0.15 5E-06 40.3 6.3 54 426-482 3-63 (77)
82 3mdf_A Peptidyl-prolyl CIS-tra 93.5 0.2 6.9E-06 40.3 7.2 58 423-483 7-71 (85)
83 2lea_A Serine/arginine-rich sp 93.5 0.14 4.9E-06 46.0 6.8 59 422-483 46-111 (135)
84 2dgu_A Heterogeneous nuclear r 93.4 0.2 6.9E-06 42.3 7.4 56 424-483 12-67 (103)
85 1x4h_A RNA-binding protein 28; 93.4 0.21 7.3E-06 42.4 7.6 57 423-482 15-78 (111)
86 2div_A TRNA selenocysteine ass 93.4 0.36 1.2E-05 40.1 8.9 58 424-483 10-74 (99)
87 2krb_A Eukaryotic translation 93.4 0.22 7.6E-06 40.1 7.3 56 425-483 3-69 (81)
88 2cqg_A TDP-43, TAR DNA-binding 93.4 0.3 1E-05 41.0 8.4 55 423-480 15-76 (103)
89 1x4g_A Nucleolysin TIAR; struc 93.4 0.18 6.2E-06 43.0 7.0 58 423-483 25-83 (109)
90 2lxi_A RNA-binding protein 10; 93.3 0.078 2.7E-06 44.3 4.5 55 424-481 2-64 (91)
91 3r27_A HnRNP L, heterogeneous 93.3 0.3 1E-05 42.3 8.3 58 423-483 21-79 (100)
92 2cq1_A PTB-like protein L; RRM 93.3 0.24 8.1E-06 42.6 7.6 57 423-482 15-72 (101)
93 2mss_A Protein (musashi1); RNA 93.2 0.18 6.2E-06 39.7 6.3 51 426-479 2-59 (75)
94 1x5t_A Splicing factor 3B subu 93.2 0.15 5.2E-06 42.2 6.1 57 424-483 6-70 (96)
95 2do0_A HnRNP M, heterogeneous 93.1 0.31 1.1E-05 41.6 8.2 58 423-483 15-78 (114)
96 1sjq_A Polypyrimidine tract-bi 93.0 0.22 7.5E-06 43.5 7.1 57 423-482 16-73 (105)
97 1x4e_A RNA binding motif, sing 93.0 0.19 6.5E-06 40.6 6.3 57 424-483 6-69 (85)
98 2cqh_A IGF-II mRNA-binding pro 93.0 0.24 8.3E-06 40.8 7.1 57 424-483 9-66 (93)
99 2cpi_A CCR4-NOT transcription 93.0 0.14 4.7E-06 44.1 5.7 59 422-483 14-85 (111)
100 1h2v_Z 20 kDa nuclear CAP bind 93.0 0.29 1E-05 44.5 8.2 58 423-483 39-103 (156)
101 2la6_A RNA-binding protein FUS 92.9 0.5 1.7E-05 39.4 9.1 60 423-483 13-85 (99)
102 2khc_A Testis-specific RNP-typ 92.9 0.22 7.4E-06 43.0 6.9 58 423-483 40-104 (118)
103 2cpf_A RNA binding motif prote 92.9 0.33 1.1E-05 40.3 7.8 57 424-483 6-72 (98)
104 2xnq_A Nuclear polyadenylated 92.8 0.33 1.1E-05 40.7 7.8 57 423-483 22-79 (97)
105 1p1t_A Cleavage stimulation fa 92.8 0.42 1.4E-05 40.0 8.4 57 424-483 9-72 (104)
106 4fxv_A ELAV-like protein 1; RN 92.8 0.33 1.1E-05 41.1 7.8 56 425-483 21-83 (99)
107 1wf1_A RNA-binding protein RAL 92.7 0.36 1.2E-05 41.2 8.1 56 424-483 28-84 (110)
108 1rk8_A CG8781-PA, CG8781-PA pr 92.7 0.3 1E-05 45.0 8.0 58 423-483 72-136 (165)
109 1x5o_A RNA binding motif, sing 92.7 0.31 1.1E-05 41.7 7.6 58 423-483 25-88 (114)
110 1u6f_A Tcubp1, RNA-binding pro 92.7 0.46 1.6E-05 42.1 8.9 59 423-484 42-107 (139)
111 1whx_A Hypothetical protein ri 92.6 0.22 7.5E-06 43.0 6.6 58 423-483 10-68 (111)
112 2dh8_A DAZ-associated protein 92.6 0.3 1E-05 41.1 7.3 54 424-480 17-77 (105)
113 2dis_A Unnamed protein product 92.6 0.35 1.2E-05 41.0 7.7 57 424-482 9-73 (109)
114 1fxl_A Paraneoplastic encephal 92.6 0.34 1.2E-05 43.2 8.1 57 424-483 3-66 (167)
115 3n9u_C Cleavage and polyadenyl 92.6 0.39 1.3E-05 44.3 8.6 59 424-483 56-121 (156)
116 2hzc_A Splicing factor U2AF 65 92.5 0.22 7.5E-06 40.3 6.0 58 424-483 7-74 (87)
117 1nu4_A U1A RNA binding domain; 92.4 0.32 1.1E-05 40.2 7.0 58 423-483 8-73 (97)
118 2dng_A Eukaryotic translation 92.3 0.39 1.3E-05 40.4 7.6 56 423-483 15-77 (103)
119 2ek1_A RNA-binding protein 12; 92.3 0.27 9.1E-06 40.6 6.4 59 424-483 16-79 (95)
120 1x4d_A Matrin 3; structural ge 92.1 0.3 1E-05 42.2 6.7 58 423-483 15-74 (102)
121 1x4f_A Matrin 3; structural ge 92.1 0.33 1.1E-05 42.8 7.0 63 418-483 20-84 (112)
122 1wi8_A EIF-4B, eukaryotic tran 92.1 0.41 1.4E-05 40.3 7.4 56 423-483 15-78 (104)
123 2f3j_A RNA and export factor b 92.0 0.56 1.9E-05 44.2 9.0 59 423-484 88-152 (177)
124 2cqb_A Peptidyl-prolyl CIS-tra 91.9 0.28 9.6E-06 41.0 6.2 57 424-483 13-76 (102)
125 3cg7_A CRN-4, cell death-relat 91.9 0.23 7.7E-06 51.2 6.7 105 211-359 88-208 (308)
126 2e5g_A U6 snRNA-specific termi 91.7 0.48 1.6E-05 39.2 7.3 55 424-483 9-66 (94)
127 2i2y_A Fusion protein consists 91.7 0.68 2.3E-05 41.7 8.9 59 423-484 73-133 (150)
128 2igi_A Oligoribonuclease; RNAs 91.6 0.68 2.3E-05 43.1 9.1 24 337-360 154-177 (180)
129 2ku7_A MLL1 PHD3-CYP33 RRM chi 91.6 0.55 1.9E-05 41.3 8.1 58 423-483 63-127 (140)
130 2j76_E EIF-4B, EIF4B, eukaryot 91.6 0.27 9.1E-06 41.4 5.7 56 423-483 19-82 (100)
131 2err_A Ataxin-2-binding protei 91.5 0.49 1.7E-05 40.5 7.4 58 423-483 29-91 (109)
132 2cqp_A RNA-binding protein 12; 91.5 0.56 1.9E-05 38.8 7.5 60 423-483 15-79 (98)
133 1iqt_A AUF1, heterogeneous nuc 91.4 0.25 8.5E-06 38.8 5.0 52 426-480 2-60 (75)
134 3s8s_A Histone-lysine N-methyl 91.4 0.51 1.7E-05 40.8 7.4 57 424-483 7-70 (110)
135 2cq4_A RNA binding motif prote 91.3 0.42 1.5E-05 40.9 6.8 57 423-483 25-88 (114)
136 3q2s_C Cleavage and polyadenyl 91.2 0.56 1.9E-05 46.0 8.5 59 424-483 69-134 (229)
137 2qfj_A FBP-interacting repress 91.2 0.69 2.4E-05 43.4 8.7 68 423-493 28-102 (216)
138 1wel_A RNA-binding protein 12; 91.1 0.44 1.5E-05 41.7 6.9 60 422-483 24-88 (124)
139 2kn4_A Immunoglobulin G-bindin 91.1 0.63 2.2E-05 42.1 8.1 59 423-484 70-135 (158)
140 2rs2_A Musashi-1, RNA-binding 91.0 0.45 1.5E-05 40.8 6.6 56 424-482 26-88 (109)
141 2cpx_A Hypothetical protein FL 91.0 1.1 3.8E-05 38.1 9.2 60 423-483 25-89 (115)
142 2jwn_A Embryonic polyadenylate 90.9 0.39 1.3E-05 41.7 6.2 57 423-483 36-99 (124)
143 2xs2_A Deleted in azoospermia- 90.9 0.44 1.5E-05 39.9 6.3 54 423-479 9-68 (102)
144 2dnl_A Cytoplasmic polyadenyla 90.9 0.21 7.3E-06 43.1 4.5 56 424-483 9-74 (114)
145 1b7f_A Protein (SXL-lethal pro 90.8 0.46 1.6E-05 42.6 6.9 57 424-483 4-67 (168)
146 2adc_A Polypyrimidine tract-bi 90.8 0.48 1.6E-05 45.8 7.4 59 423-484 34-95 (229)
147 1x4b_A Heterogeneous nuclear r 90.8 0.47 1.6E-05 40.8 6.6 55 423-480 27-88 (116)
148 2nlw_A Eukaryotic translation 90.7 0.7 2.4E-05 39.2 7.5 58 423-483 15-83 (105)
149 3md3_A Nuclear and cytoplasmic 90.7 0.5 1.7E-05 42.1 6.9 57 425-484 2-64 (166)
150 1l3k_A Heterogeneous nuclear r 90.4 0.83 2.8E-05 42.1 8.4 55 423-480 13-74 (196)
151 3nmr_A Cugbp ELAV-like family 90.4 0.86 2.9E-05 41.0 8.3 56 425-483 5-69 (175)
152 2dgw_A Probable RNA-binding pr 90.3 1.1 3.9E-05 36.4 8.3 56 423-483 10-71 (91)
153 3ns6_A Eukaryotic translation 90.3 0.39 1.3E-05 40.5 5.5 58 423-483 6-76 (100)
154 3nmr_A Cugbp ELAV-like family 90.3 0.88 3E-05 40.9 8.3 58 423-483 95-158 (175)
155 2gbz_A Oligoribonuclease; ORN, 90.2 0.89 3E-05 43.2 8.6 24 337-360 158-181 (194)
156 2ki2_A SS-DNA binding protein 90.2 0.5 1.7E-05 38.5 5.9 55 425-483 3-64 (90)
157 1wf0_A TDP-43, TAR DNA-binding 90.1 0.28 9.7E-06 40.0 4.4 51 424-477 6-58 (88)
158 2dgx_A KIAA0430 protein; RRM d 90.0 1.2 4.3E-05 36.9 8.4 57 424-483 10-74 (96)
159 2fc9_A NCL protein; structure 89.7 0.44 1.5E-05 39.8 5.3 57 423-483 15-75 (101)
160 1fjc_A Nucleolin RBD2, protein 89.4 0.43 1.5E-05 39.4 5.0 57 423-483 16-75 (96)
161 2lmi_A GRSF-1, G-rich sequence 89.1 0.6 2.1E-05 39.7 5.9 56 423-479 11-73 (107)
162 2cpe_A RNA-binding protein EWS 88.9 0.89 3E-05 38.7 6.8 60 423-483 15-87 (113)
163 1b7f_A Protein (SXL-lethal pro 88.8 1.4 4.7E-05 39.4 8.4 58 423-483 89-153 (168)
164 2qfj_A FBP-interacting repress 88.7 1.2 4.2E-05 41.6 8.3 58 424-484 126-190 (216)
165 3md3_A Nuclear and cytoplasmic 88.5 1.5 5.1E-05 38.9 8.3 58 423-483 87-151 (166)
166 1fxl_A Paraneoplastic encephal 88.5 1.5 5E-05 39.0 8.3 58 423-483 88-152 (167)
167 2g4b_A Splicing factor U2AF 65 88.5 1.3 4.4E-05 39.8 8.0 58 423-483 94-158 (172)
168 2a3j_A U1 small nuclear ribonu 88.4 1.3 4.6E-05 39.4 7.9 59 423-484 29-95 (127)
169 1qm9_A Polypyrimidine tract-bi 88.4 0.9 3.1E-05 42.3 7.1 58 423-483 120-180 (198)
170 2fc8_A NCL protein; structure 88.3 0.96 3.3E-05 37.7 6.5 55 423-483 15-76 (102)
171 1x5p_A Negative elongation fac 88.2 1.6 5.4E-05 36.2 7.7 56 423-483 15-71 (97)
172 3sde_A Paraspeckle component 1 88.1 1.4 4.6E-05 43.5 8.5 59 422-483 21-80 (261)
173 2voo_A Lupus LA protein; RNA-b 88.1 0.89 3E-05 43.3 6.9 57 423-482 109-171 (193)
174 2jvr_A Nucleolar protein 3; RN 88.0 1.2 4.2E-05 38.8 7.1 58 424-484 29-90 (111)
175 3tyt_A Heterogeneous nuclear r 87.6 1 3.5E-05 43.2 7.0 59 424-483 124-187 (205)
176 2cq2_A Hypothetical protein LO 87.6 0.7 2.4E-05 40.9 5.3 57 424-483 26-85 (114)
177 2diu_A KIAA0430 protein; struc 87.6 1.9 6.4E-05 37.2 7.8 58 425-485 11-70 (96)
178 2adc_A Polypyrimidine tract-bi 87.5 1 3.5E-05 43.5 7.0 57 424-483 152-211 (229)
179 2cjk_A Nuclear polyadenylated 87.5 1 3.5E-05 40.3 6.6 54 424-480 4-64 (167)
180 1wez_A HnRNP H', FTP-3, hetero 87.5 1.1 3.7E-05 38.1 6.4 53 423-479 15-73 (102)
181 3d2w_A TAR DNA-binding protein 87.1 0.79 2.7E-05 37.9 5.1 51 423-476 11-63 (89)
182 3pgw_A U1-A; protein-RNA compl 87.0 1.4 4.7E-05 43.5 7.8 58 423-483 207-266 (282)
183 2db1_A Heterogeneous nuclear r 87.0 1.1 3.7E-05 39.0 6.2 56 423-479 17-79 (118)
184 1qm9_A Polypyrimidine tract-bi 87.0 0.77 2.6E-05 42.7 5.6 58 424-484 4-64 (198)
185 2dha_A FLJ20171 protein; RRM d 86.7 0.88 3E-05 40.5 5.5 56 424-480 24-87 (123)
186 1wg5_A Heterogeneous nuclear r 86.6 1.7 5.9E-05 36.6 7.2 56 423-480 15-76 (104)
187 3egn_A RNA-binding protein 40; 86.6 1.7 5.8E-05 38.7 7.5 59 424-483 46-114 (143)
188 1owx_A Lupus LA protein, SS-B, 86.5 1.1 3.8E-05 40.1 6.1 56 423-481 18-76 (121)
189 4f02_A Polyadenylate-binding p 86.4 1.9 6.6E-05 41.0 8.2 57 424-483 16-79 (213)
190 2yh0_A Splicing factor U2AF 65 86.1 2.3 7.9E-05 39.1 8.4 58 423-483 114-178 (198)
191 2cjk_A Nuclear polyadenylated 86.1 1.5 5.1E-05 39.2 6.9 54 423-479 87-147 (167)
192 3pgw_S U1-70K; protein-RNA com 85.9 1.2 4.2E-05 48.0 7.2 58 424-484 103-167 (437)
193 1sjr_A Polypyrimidine tract-bi 85.8 2.4 8.2E-05 39.9 8.3 56 425-483 48-106 (164)
194 1fj7_A Nucleolin RBD1, protein 85.3 1.5 5E-05 36.5 6.0 58 424-483 18-79 (101)
195 1wg1_A KIAA1579 protein, homol 85.3 1.1 3.9E-05 36.4 5.2 56 425-484 7-63 (88)
196 2cpy_A RNA-binding protein 12; 84.6 1.6 5.4E-05 37.5 6.1 56 423-480 15-76 (114)
197 2bz2_A Negative elongation fac 84.2 3.3 0.00011 36.2 8.1 57 423-484 39-96 (121)
198 2g4b_A Splicing factor U2AF 65 84.1 2.6 8.9E-05 37.8 7.5 58 424-483 5-72 (172)
199 2qxf_A Exodeoxyribonuclease I; 83.7 2.6 8.7E-05 46.2 8.5 100 221-359 88-200 (482)
200 2e5i_A Heterogeneous nuclear r 83.3 3.1 0.0001 37.1 7.5 55 426-483 28-84 (124)
201 2hgl_A HNRPF protein, heteroge 83.2 1.9 6.5E-05 38.9 6.2 59 423-483 44-109 (136)
202 1l3k_A Heterogeneous nuclear r 83.1 2.7 9.3E-05 38.5 7.4 54 424-480 105-165 (196)
203 3tyt_A Heterogeneous nuclear r 82.8 2.6 8.8E-05 40.3 7.3 57 424-483 5-64 (205)
204 2m2b_A RNA-binding protein 10; 82.2 1.6 5.4E-05 38.5 5.1 58 424-483 24-88 (131)
205 2dnn_A RNA-binding protein 12; 81.8 3.3 0.00011 35.8 6.9 52 423-478 16-73 (109)
206 4f02_A Polyadenylate-binding p 81.0 3.6 0.00012 39.0 7.6 57 424-483 104-165 (213)
207 3zzy_A Polypyrimidine tract-bi 80.4 4.6 0.00016 36.4 7.5 55 426-483 31-88 (130)
208 3smz_A Protein raver-1, ribonu 80.3 4.4 0.00015 39.8 8.2 57 424-483 96-159 (284)
209 3pgw_A U1-A; protein-RNA compl 80.0 5.2 0.00018 39.3 8.6 59 423-484 9-75 (282)
210 2ghp_A U4/U6 snRNA-associated 79.9 2.4 8.1E-05 42.0 6.0 57 423-483 210-275 (292)
211 2ghp_A U4/U6 snRNA-associated 79.0 3.5 0.00012 40.8 7.0 54 423-479 41-99 (292)
212 2wbr_A GW182, gawky, LD47780P; 78.5 4.1 0.00014 34.5 6.2 57 426-484 10-66 (89)
213 3sde_A Paraspeckle component 1 77.8 4.7 0.00016 39.5 7.5 57 424-483 97-159 (261)
214 2yh0_A Splicing factor U2AF 65 77.0 6.1 0.00021 36.2 7.6 57 425-483 6-72 (198)
215 3smz_A Protein raver-1, ribonu 77.0 4.9 0.00017 39.5 7.4 58 423-483 184-248 (284)
216 2hgm_A HNRPF protein, heteroge 76.7 5.4 0.00018 35.5 6.8 54 423-480 42-103 (126)
217 1fje_B Nucleolin RBD12, protei 76.6 7.3 0.00025 35.0 7.9 55 423-483 99-158 (175)
218 3u1l_A PRE-mRNA-splicing facto 75.3 4 0.00014 40.6 6.1 57 424-483 135-201 (240)
219 2lcw_A RNA-binding protein FUS 74.9 0.75 2.6E-05 39.5 0.0 59 424-483 8-79 (116)
220 2cpm_A Sperm-associated antige 70.2 4.8 0.00016 34.4 4.6 42 144-188 32-73 (94)
221 2hgn_A Heterogeneous nuclear r 69.6 3.7 0.00013 37.2 4.0 52 423-478 46-103 (139)
222 1fje_B Nucleolin RBD12, protei 68.9 18 0.00062 32.3 8.6 59 423-483 13-75 (175)
223 1ufw_A Synaptojanin 2; RNP dom 64.9 8 0.00027 33.2 4.8 41 438-483 39-79 (95)
224 2d9o_A DNAJ (HSP40) homolog, s 63.7 10 0.00036 32.2 5.5 46 433-481 27-74 (100)
225 1vd2_A Protein kinase C, IOTA 62.6 15 0.00051 31.1 6.1 58 426-483 17-76 (89)
226 3tr8_A Oligoribonuclease; tran 58.8 5.3 0.00018 38.0 3.0 37 212-248 79-123 (186)
227 3tht_A Alkylated DNA repair pr 58.0 9.8 0.00034 39.8 5.1 56 425-484 20-79 (345)
228 2dit_A HIV TAT specific factor 57.3 44 0.0015 28.1 8.4 44 437-483 40-86 (112)
229 2kfn_A Klenow fragment of DNA 51.1 23 0.0008 39.4 7.1 107 221-361 82-194 (605)
230 2dhx_A Poly (ADP-ribose) polym 47.7 73 0.0025 27.7 8.0 57 423-480 8-66 (104)
231 1yt3_A Ribonuclease D, RNAse D 46.5 47 0.0016 34.5 8.1 101 220-361 65-171 (375)
232 3saf_A Exosome component 10; e 46.3 69 0.0023 34.3 9.5 99 222-361 175-278 (428)
233 2hbj_A Exosome complex exonucl 46.2 44 0.0015 35.4 7.9 100 221-361 151-255 (410)
234 2dnr_A Synaptojanin-1; RRM dom 46.2 33 0.0011 29.1 5.5 38 438-479 30-67 (91)
235 2j8a_A Histone-lysine N-methyl 43.3 51 0.0017 30.0 6.6 43 426-470 5-57 (136)
236 1whr_A Hypothetical KIAA1002 p 41.3 32 0.0011 30.7 5.0 42 93-161 28-69 (124)
237 3v4m_A Splicing factor U2AF 65 38.1 43 0.0015 28.3 5.2 44 437-483 29-81 (105)
238 1jmt_A Splicing factor U2AF 35 36.4 62 0.0021 27.1 5.9 44 438-483 41-90 (104)
239 2pe8_A Splicing factor 45; RRM 35.7 62 0.0021 27.3 5.8 45 436-483 26-78 (105)
240 3gku_A Probable RNA-binding pr 30.5 55 0.0019 32.2 5.1 43 143-188 167-209 (225)
241 3ue2_A Poly(U)-binding-splicin 29.1 74 0.0025 27.6 5.3 44 437-483 39-93 (118)
242 2e6m_A Werner syndrome ATP-dep 28.3 1.2E+02 0.0039 28.3 6.9 101 222-360 89-195 (208)
243 1vk0_A Hypothetical protein; h 28.1 55 0.0019 31.4 4.6 106 219-358 98-205 (206)
244 3s6e_A RNA-binding protein 39; 27.9 74 0.0025 27.4 5.0 44 437-483 31-77 (114)
No 1
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.4e-81 Score=693.51 Aligned_cols=411 Identities=23% Similarity=0.369 Sum_probs=253.9
Q ss_pred CcccceeeeeeecCCCCCCCCCCeeEEEecchHHHHHHcCCCccchhhcCCCcCCHHHHHHHHHHhhhhccccccccccc
Q 007386 1 MAFFGRHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHS 80 (605)
Q Consensus 1 ~~~~rpyNFylFPr~~~~~~~~dr~F~cQaSSL~FLa~~gFDFNk~i~~GIpYLsr~eE~~~~~~l~~~~~~~~~~~~~~ 80 (605)
.|.++|||||+||++. +...+|++|+||++||+||++||||||+|+++|||||+++||+.+++++.+++......
T Consensus 84 ~~~~~~fNf~~fp~~~-~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~~~---- 158 (507)
T 3d45_A 84 KHVTKSFNFYVFPKPF-SRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGA---- 158 (507)
T ss_dssp CEEEEEEEEEBCCCCC-SSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC------------
T ss_pred ceeEEeEEEEecCccc-cccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhhcc----
Confidence 3789999999999963 33467999999999999999999999999999999999999999999988765532210
Q ss_pred cccccccCCCCCcchHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHHHH
Q 007386 81 LKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLV 160 (605)
Q Consensus 81 ~~~~~d~~l~~~~D~~F~e~v~~~I~eWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~L~~~~s~qrrLV~q~ 160 (605)
..+..+....+.+|..|+++++++|++|++... . +.+.|++||+|||+||||+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~----~-----------------------~~l~i~~~n~~~r~Lv~q~ 211 (507)
T 3d45_A 159 GALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEE----K-----------------------RSLELDPCTGFQRKLIYQT 211 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHHHHHhcCC----C-----------------------CccccCCCcHHHHHHHHHH
Confidence 001111112345778899999999999996421 0 1356889999999999999
Q ss_pred HHHhCCCeEEEEeccCCCCceeEEEEEcchhhHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHhcCCCeEEechhhhH
Q 007386 161 VRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 240 (605)
Q Consensus 161 lr~~fp~lv~v~~~~~~~~~~~~vv~~~~~ee~~~l~ke~~ee~~~~~e~~l~~~iGfr~v~~~l~~s~kpiVgHN~~~D 240 (605)
|+++||+++++++....+..+.++|.+..++++. ..++++..++++++.+++|||+|+++|++++||||||||++|
T Consensus 212 l~~~fp~~v~~~~~~~~~~~~~i~v~~~~~e~~~----~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~D 287 (507)
T 3d45_A 212 LSWKYPKGIHVETLETDKKERHIVISKVDEEERK----RREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLD 287 (507)
T ss_dssp --------------------------------------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHH
T ss_pred HHHhCCCceEeeeccCCCcceeEEEEeCCHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHH
Confidence 9999999998876432332333444444444432 233344445567899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHHhhhhhcccCCcccccccCCCc
Q 007386 241 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV 320 (605)
Q Consensus 241 l~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v 320 (605)
|||||++|+||||++++|||+.+|.+||.|||||||++..+ ++... .+++|+++++.|... .+..|.|
T Consensus 288 l~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~-~~~~~--~~~~L~~l~~~l~~~---------~~~~p~i 355 (507)
T 3d45_A 288 VMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQP-FKDII--NNTSLAELEKRLKET---------PFDPPKV 355 (507)
T ss_dssp HHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTT-HHHHC--CCCCHHHHHHHTTST---------TCCCCCE
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCc-ccccc--CCCCHHHHHHHHhcc---------CCCCCeE
Confidence 99999999999999999999999999999999999998653 44443 489999999886421 1223443
Q ss_pred eeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhCCCcccCCchhhhhhhhhhccccccccccCC-CccccccC
Q 007386 321 KVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT-NGEIINLS 399 (605)
Q Consensus 321 ~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~lg~~~~~~~~~~~l~~~~~l~~~~N~L~~~~~-~~~~idL~ 399 (605)
. + .++..++....++.|||||||||||+||++|+++||. +...+....++.+..+++|.|+|+++++ +.++|||.
T Consensus 356 ~--~-~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~~-~~~~~~~~~~~~~~~l~~~~N~l~l~~~~d~~~i~l~ 431 (507)
T 3d45_A 356 E--S-AEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS-LLSPPKMCVSARSKLIEPFFNKLFLMRVMDIPYLNLE 431 (507)
T ss_dssp E--E-CTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHCC----------CCSCSSSGGGTTEECCCSBSSCCSEESS
T ss_pred E--e-cccccccccCCCCcccHHHHHHHHHHHHHHHHHHHhh-ccCCcccccccchhHHHhhheeeeeeccCCCceeeCC
Confidence 2 2 1222334455789999999999999999999999985 2222222234456689999999999985 56789999
Q ss_pred CCCCCCccccccccccCCCcccccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHH
Q 007386 400 TGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~p~~~~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~ 479 (605)
|.++.+++ ++||+|+||++|+++||.+||+ +||.. +|+|||||||||+|+++++|+++|+
T Consensus 432 g~d~~~~R----------------~~vl~v~f~~~~~~~~i~~~fs-~fg~v---~V~widdt~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 432 GPDLQPKR----------------DHVLHVTFPKEWKTSDLYQLFS-AFGNI---QISWIDDTSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp SCCCCCCG----------------GGEEEEECCTTCCHHHHHHHGG-GGCCC---EEEECSSSEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCc----------------CcEEEEeCCCCCCHHHHHHHHH-hcCCE---EEEEEcCCeEEEEECCHHHHHHHHH
Confidence 86654432 3599999999999999999995 89954 6799999999999999999999999
Q ss_pred Hhcc
Q 007386 480 LKGS 483 (605)
Q Consensus 480 ~~~~ 483 (605)
+++.
T Consensus 492 ~~~~ 495 (507)
T 3d45_A 492 TSKY 495 (507)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8875
No 2
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=6.7e-69 Score=583.15 Aligned_cols=341 Identities=23% Similarity=0.389 Sum_probs=185.5
Q ss_pred cccceeeeeeecCCCCCCCCCCeeEEEecchHHHHHHcCCCccchhhcCCCcCCHHHHHHHHHHhhhhccccccccccc-
Q 007386 2 AFFGRHNFFIFQRQELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHS- 80 (605)
Q Consensus 2 ~~~rpyNFylFPr~~~~~~~~dr~F~cQaSSL~FLa~~gFDFNk~i~~GIpYLsr~eE~~~~~~l~~~~~~~~~~~~~~- 80 (605)
|.++|||||+||++ .+...+++.|+||++||+||++||||||+|+++|||||+++||+++++++.++...........
T Consensus 83 ~~~~~fNF~~FP~~-~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~~~~~~~ 161 (430)
T 2a1r_A 83 YITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSY 161 (430)
T ss_dssp EEEEEEEEEBCCCC-SSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC------------------
T ss_pred eeEEEEEEEecccc-ccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 78999999999996 3445678999999999999999999999999999999999999999888876643211000000
Q ss_pred -cccccccCC-CCCcchHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHH
Q 007386 81 -LKEIRDTHL-FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQ 158 (605)
Q Consensus 81 -~~~~~d~~l-~~~~D~~F~e~v~~~I~eWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~L~~~~s~qrrLV~ 158 (605)
.......|+ ...++..|+++++++|++|++.. + .+.++|++||+|||+|||
T Consensus 162 ~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~----~-----------------------~~~l~l~~~~~~qr~Lv~ 214 (430)
T 2a1r_A 162 VSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE----E-----------------------NKNLDLEPCTGFQRKLIY 214 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccccccccCCcHHHHHHHHHHHHHHHHHHcCC----C-----------------------CCccccCCCcHHHHHHHH
Confidence 000011111 22355779999999999998521 1 134678999999999999
Q ss_pred HHHHHhCCCeEEEEeccCCCCceeEEEEEcchhhHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHhcCCCeEEechhh
Q 007386 159 LVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCF 238 (605)
Q Consensus 159 q~lr~~fp~lv~v~~~~~~~~~~~~vv~~~~~ee~~~l~ke~~ee~~~~~e~~l~~~iGfr~v~~~l~~s~kpiVgHN~~ 238 (605)
|+|+++||+++.+.+. +..+.+..|++++.++++.. ..++++..++++++.+++|||+||++|++++|||||||||
T Consensus 215 q~l~~~fp~~~~~~~~-~~~~~~~~v~v~k~~~e~~~---~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~l 290 (430)
T 2a1r_A 215 QTLSWKYPKGIHVETL-ETEKKERYIVISKVDEEERK---RREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNML 290 (430)
T ss_dssp ----------------------------------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCH
T ss_pred HHHHHhCCCceeeeee-eecCCceEEEEEeCCHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhH
Confidence 9999999999876542 22222233333333322211 1112222334577899999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHHhhhhhcccCCcccccccCC
Q 007386 239 LDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQP 318 (605)
Q Consensus 239 ~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p 318 (605)
+||||+|++|+||||++++|||+.+|++||.|||||||++.++ ++... .+++|+++++.+.... +..|
T Consensus 291 lDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~-~~~~~--~~~sL~~l~~~l~~~~---------~~~p 358 (430)
T 2a1r_A 291 LDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQP-FKDII--NNTSLAELEKRLKETP---------FNPP 358 (430)
T ss_dssp HHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTT-TTTTC--SCCSHHHHHHHTTSTT---------CCCC
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccc-hhhcc--CCCCHHHHHHHHHhCC---------CCCC
Confidence 9999999999999999999999999999999999999998764 44432 4799999998874321 2233
Q ss_pred Cceeeeeeccc-cccCCCCCcccchhhhHHHHHHHHHHHHHHhCCCcccCCchhhhhhhhhhccccccccccCC
Q 007386 319 SVKVEVEVDDI-RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 391 (605)
Q Consensus 319 ~v~i~v~~~~~-~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~lg~~~~~~~~~~~l~~~~~l~~~~N~L~~~~~ 391 (605)
. |+ .+.. .++....++.|||||||||||+||++||++||... ..++....+..+.+++|+|+|+++++
T Consensus 359 ~--i~--~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~~~-~~~~~~~~~~~~~~~~~~n~~~~~r~ 427 (430)
T 2a1r_A 359 K--VE--SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFL-SPPKIHVSARSKLIEPFFNKLFLMRV 427 (430)
T ss_dssp C--EE--ECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGGGS-SSCCSCCCSSCTTSGGGSSCCC----
T ss_pred e--ee--cCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhhcc-CCCcccccchhHHHHHhhhhhheeee
Confidence 3 32 3332 23334568999999999999999999999998732 22222233456789999999999885
No 3
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.6e-27 Score=243.78 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=87.8
Q ss_pred EEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHHhhhhhcccCCc
Q 007386 232 IVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK 310 (605)
Q Consensus 232 iVgHN~~~Dl~~l~~~F-~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~~~ 310 (605)
||+||+.+|++||++.+ .++||+++.||+..++.+||.|||||||+..+..+ .++|+.+-+.|
T Consensus 153 WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l-------~ggL~~lA~~L--------- 216 (285)
T 4gmj_B 153 WLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL-------KGGLQEVAEQL--------- 216 (285)
T ss_dssp EEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTC-------CSCHHHHHHHT---------
T ss_pred eEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhcccc-------CChHHHHHHhC---------
Confidence 67777779999999999 58899999999999999999999999999887654 45687764433
Q ss_pred ccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhCCCcccCCchhhhhhhhhhcccccccccc
Q 007386 311 STHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 389 (605)
Q Consensus 311 ~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~lg~~~~~~~~~~~l~~~~~l~~~~N~L~~~ 389 (605)
.+. +.|+.||||||||+||.||++|+..++.+ . -...+|.|.||+-
T Consensus 217 --------------~v~-------r~g~~HqAGsDSllT~~~F~kl~~~~f~~---~---------~~~~~~~g~l~Gl 262 (285)
T 4gmj_B 217 --------------ELE-------RIGPQHQAGSDSLLTGMAFFKMREMFFED---H---------IDDAKYCGHLYGL 262 (285)
T ss_dssp --------------TCC-------CCSCTTSHHHHHHHHHHHHHHHHHHHHTT---C---------CCHHHHTTCCTTS
T ss_pred --------------CCC-------CCCCCCcchhHHHHHHHHHHHHHHHHhcC---C---------cchHHhCCEEecc
Confidence 111 34788999999999999999999988432 1 1234699999984
No 4
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=99.94 E-value=6.5e-27 Score=243.50 Aligned_cols=110 Identities=26% Similarity=0.268 Sum_probs=89.9
Q ss_pred CeEEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHHhhhhhcccC
Q 007386 230 KLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 308 (605)
Q Consensus 230 kpiVgHN~~~Dl~~l~~~F-~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~ 308 (605)
+.||.||+.+|++||++.+ +.+||++++||++.++.+||.|||||||+..+..+ .++|+.+.+.|.
T Consensus 162 V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l-------~ggL~~lA~~L~------ 228 (333)
T 2p51_A 162 VTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNN-------SKGLQDIADDLQ------ 228 (333)
T ss_dssp CEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCC-------CCCHHHHHHHTT------
T ss_pred ceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccc-------cCCHHHHHHHcC------
Confidence 4577889999999999999 58999999999999999999999999999887543 467888765431
Q ss_pred CcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhCCCcccCCchhhhhhhhhhccccccccc
Q 007386 309 SKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 388 (605)
Q Consensus 309 ~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~lg~~~~~~~~~~~l~~~~~l~~~~N~L~~ 388 (605)
+. +.|..|+||+||||||.||++|+..+..+ . ...+|.|+||+
T Consensus 229 -----------------v~-------Rig~~HqAGsDSlLT~~~F~kl~~~~f~~---~----------~~~~~~g~l~G 271 (333)
T 2p51_A 229 -----------------IH-------RIGPQHQAGSDALLTARIFFEIRSRYFDG---S----------IDSRMLNQLYG 271 (333)
T ss_dssp -----------------CC-------CCSCTTSHHHHHHHHHHHHHHHHHHHHTT---S----------CCGGGTTCCTT
T ss_pred -----------------CC-------ccCcchhhhhHHHHHHHHHHHHHHHhcCC---C----------chhhhCCEEec
Confidence 11 45899999999999999999999977321 1 23568888887
Q ss_pred c
Q 007386 389 S 389 (605)
Q Consensus 389 ~ 389 (605)
.
T Consensus 272 l 272 (333)
T 2p51_A 272 L 272 (333)
T ss_dssp C
T ss_pred c
Confidence 4
No 5
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=99.93 E-value=8.3e-27 Score=236.05 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=81.6
Q ss_pred CeEEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHHhhhhhcccC
Q 007386 230 KLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 308 (605)
Q Consensus 230 kpiVgHN~~~Dl~~l~~~F-~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~ 308 (605)
..||.||+.+|++||++.+ ..+||+++++|++.++.+||.|||||||+..+..+ .++|+.+.+.|.
T Consensus 141 v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l-------~~gL~~la~~L~------ 207 (252)
T 2d5r_A 141 VKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL-------KGGLQEVAEQLE------ 207 (252)
T ss_dssp CEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTC-------CSSHHHHHHHHT------
T ss_pred ceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccc-------CCCHHHHHHHcC------
Confidence 4688899999999999999 57999999999999999999999999999887543 466888765441
Q ss_pred CcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhC
Q 007386 309 SKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361 (605)
Q Consensus 309 ~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~lg 361 (605)
+. +.|+.|+||+||++||.+|++|+..+.
T Consensus 208 -----------------v~-------r~g~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 208 -----------------LE-------RIGPQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp -----------------CC-------CCSSTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred -----------------CC-------ccCcccchhhhHHHHHHHHHHHHHHhc
Confidence 11 457899999999999999999998874
No 6
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=99.93 E-value=3.7e-26 Score=234.99 Aligned_cols=120 Identities=13% Similarity=0.195 Sum_probs=89.4
Q ss_pred CeEEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHh-h-------ccCCCChHHHHHh
Q 007386 230 KLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR-M-------KKSSTSLSKAFSV 300 (605)
Q Consensus 230 kpiVgHN~~~Dl~~l~~~F-~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~-~-------~~~~tsL~~l~~~ 300 (605)
..||.+|+.+|++||++.+ +.+||+++++|+..++.+||.|||||||+..+..+++. + .....+|+.+.+.
T Consensus 156 v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~ 235 (289)
T 1uoc_A 156 VTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADE 235 (289)
T ss_dssp SEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHH
T ss_pred ceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHH
Confidence 4588899999999999999 57999999999999999999999999999876544210 0 0123467776543
Q ss_pred hhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhCCCcccCCchhhhhhhhhhc
Q 007386 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLR 380 (605)
Q Consensus 301 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~lg~~~~~~~~~~~l~~~~~l~ 380 (605)
| .+. +.|..|+||+||++||.+|.+|+..+...+... ...+
T Consensus 236 L-----------------------~v~-------r~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~---------~~~~ 276 (289)
T 1uoc_A 236 L-----------------------GLP-------RFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNG---------TDFA 276 (289)
T ss_dssp T-----------------------TCC-------CCGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTS---------CBGG
T ss_pred c-----------------------CCC-------ccCcccccHHHHHHHHHHHHHHHHHHhhhhcCC---------CChH
Confidence 3 111 557889999999999999999998773211110 1245
Q ss_pred cccccccc
Q 007386 381 EHVNLLYL 388 (605)
Q Consensus 381 ~~~N~L~~ 388 (605)
+|.|+||+
T Consensus 277 ~~~g~l~G 284 (289)
T 1uoc_A 277 KYQGVIYG 284 (289)
T ss_dssp GGTTCSSC
T ss_pred HhCCEEeC
Confidence 79999987
No 7
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=99.46 E-value=9e-14 Score=120.43 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=58.0
Q ss_pred ccccCCCCCCCccccccccccCCCcccccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhH
Q 007386 395 IINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 474 (605)
Q Consensus 395 ~idL~~~~~~~~~~~~~~l~~~~p~~~~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~ 474 (605)
..||.|+++.|.+ +|||+++||++||+.||.++|+ +||.+ +|+|||||+|||+|++++.|
T Consensus 3 ~~~l~g~d~~p~r----------------~HVf~l~FP~ewKt~DI~~lFs-~fggv---~I~WidDTsAlvvf~~~~~a 62 (100)
T 1whv_A 3 SGSSGGPDLQPKR----------------DHVLHVTFPKEWKTSDLYQLFS-AFGNI---QISWIDDTSAFVSLSQPEQV 62 (100)
T ss_dssp CSCCCCSCCCCCC----------------CSEEEEECCTTCCHHHHHHHHT-TTCSC---CCEEEETTEEEEECSCHHHH
T ss_pred ccccCCCCCCCCC----------------CeEEEEeCChhhhhHHHHHHhh-ccCCE---EEEEEcCCeEEEEecCHHHH
Confidence 4578887776755 4588889999999999999996 89965 56999999999999999999
Q ss_pred HHHHHHhc
Q 007386 475 SKFLDLKG 482 (605)
Q Consensus 475 ~~~L~~~~ 482 (605)
+..|+.+.
T Consensus 63 ~~al~~i~ 70 (100)
T 1whv_A 63 QIAVNTSK 70 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99888654
No 8
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=99.33 E-value=9.9e-13 Score=114.27 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=50.4
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~ 482 (605)
.++|||+++||++||+.||.++|+ +||. ++|+|||||+|||+|++++.|...|+.+.
T Consensus 4 ~R~HV~~l~FP~ewKt~Di~~lFs-~fgg---v~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 4 GSDHVLHVTFPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEEECCTTCCHHHHHHHTT-TSEE---EEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred CCCeEEEEeCChhhhhHHHHHHHh-ccCC---EEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 357789999999999999999996 8883 47899999999999999999998877654
No 9
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=99.00 E-value=6.4e-10 Score=94.51 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHHHHHHHhCCCeEEEE
Q 007386 93 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLR 172 (605)
Q Consensus 93 ~D~~F~e~v~~~I~eWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~L~~~~s~qrrLV~q~lr~~fp~lv~v~ 172 (605)
.+..|++.++++|.+||+.. . . ..|.|++||+||||||||+|+++||+.++++
T Consensus 8 e~k~~id~i~~kIe~FL~s~---~-~-----------------------~~l~l~pCN~f~RkLIYQ~~~~kfp~~i~ve 60 (87)
T 1ug8_A 8 DQKKFIDQVIEKIEDFLQSE---E-K-----------------------RSLELDPCTGFQRKLIYQTLSWKYPKGIHVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCS---S-C-----------------------CEEECCCCCSHHHHHHHHHHHHHSSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCC---C-C-----------------------CceecCCchHHHHHHHHHHHHHhcCCceEEE
Confidence 34679999999999999732 1 1 1378999999999999999999999999999
Q ss_pred eccCCCCceeEEE-EEcchh
Q 007386 173 VSGENSCSQNVIV-YIESES 191 (605)
Q Consensus 173 ~~~~~~~~~~~vv-~~~~~e 191 (605)
+....+ .+++|+ ...+.+
T Consensus 61 t~~~e~-~~~~ivv~~~~~E 79 (87)
T 1ug8_A 61 TLETDK-KERHIVISKVDEE 79 (87)
T ss_dssp EECCSS-SCSEEEEEECCTT
T ss_pred EEecCC-ceEEEEEEecCHH
Confidence 864443 444444 444443
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.59 E-value=0.01 Score=56.45 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=63.3
Q ss_pred hhhhccHHHHHHHHhc--CCCeEEechhhhHHHHHHHHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHh
Q 007386 212 IKASIGFRHVIDLLSS--EKKLIVGHNCFLDIAHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR 286 (605)
Q Consensus 212 l~~~iGfr~v~~~l~~--s~kpiVgHN~~~Dl~~l~~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~ 286 (605)
+.++.-|..|++.+.. .+.++||||.-+|+.+|-+.| +| ++|. +. .+..++||-.|+...
T Consensus 76 l~~~~~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~--------~~~~~iDt~~l~~~~------ 140 (194)
T 2gui_A 76 LLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN--------TFCKVTDSLAVARKM------ 140 (194)
T ss_dssp HTTSCCHHHHHHHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG--------GTSEEEEHHHHHHHH------
T ss_pred HhCCCCHHHHHHHHHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc--------ccCceeeHHHHHHHH------
Confidence 4445566666555432 467999999999999998776 22 2232 11 013578887665421
Q ss_pred hccCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCC-cccchhhhHHHHHHHHHHHHH
Q 007386 287 MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG-VKHEAGYDAFMTGCVFAQACS 358 (605)
Q Consensus 287 ~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~-~~HEAGyDA~mTG~vF~kL~~ 358 (605)
......+|..+.+.+ .++ ..+ ..|.|-.||.+|+.+|.+|..
T Consensus 141 ~p~~~~~L~~l~~~~-----------------------gi~-------~~~~~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 141 FPGKRNSLDALCARY-----------------------EID-------NSKRTLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp STTSCCSHHHHHHHT-----------------------TCC-------CTTCSSCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHHc-----------------------CcC-------CCCCCCCChHHHHHHHHHHHHHHHh
Confidence 111245677764332 011 113 579999999999999999854
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=96.20 E-value=0.018 Score=59.11 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=66.3
Q ss_pred hhhhhccHHHHHHHH----hcC-----CCeEEechhhhHHH-HHHHHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHHh
Q 007386 211 SIKASIGFRHVIDLL----SSE-----KKLIVGHNCFLDIA-HIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILL 277 (605)
Q Consensus 211 ~l~~~iGfr~v~~~l----~~s-----~kpiVgHN~~~Dl~-~l~~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L~ 277 (605)
.+..+.-|..|++.+ ... ++++||||.-+|+. +|-..| +| ++|. ++..++||+.+.
T Consensus 146 ~v~~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~ 214 (299)
T 1zbh_A 146 QVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSY 214 (299)
T ss_dssp HHHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc-----------ccchHHHHHHHH
Confidence 344556676666653 333 26999999999999 887776 33 3442 123578998775
Q ss_pred hhchhHHHhhccCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHH
Q 007386 278 NSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 357 (605)
Q Consensus 278 ~~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~ 357 (605)
... .+ ...+..+|..+.+.+ .++ ..+..|.|-.||..|+.+|.+|.
T Consensus 215 ~~~---~~-~~~~~~~L~~l~~~~-----------------------gi~-------~~g~~H~Al~DA~ata~l~~~l~ 260 (299)
T 1zbh_A 215 GNF---YK-VPRSQTKLTIMLEKL-----------------------GMD-------YDGRPNCGLDDSKNIARIAVRML 260 (299)
T ss_dssp HHH---HT-CCGGGCSHHHHHHHT-----------------------TCC-------CCSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHH---hC-CCCCCccHHHHHHHc-----------------------CCC-------CCCCCCChHHHHHHHHHHHHHHH
Confidence 421 11 011135677765432 011 12467999999999999999998
Q ss_pred HHh
Q 007386 358 SHL 360 (605)
Q Consensus 358 ~~l 360 (605)
...
T Consensus 261 ~~~ 263 (299)
T 1zbh_A 261 QDG 263 (299)
T ss_dssp HTT
T ss_pred HhC
Confidence 765
No 12
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=96.08 E-value=0.016 Score=55.30 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=63.2
Q ss_pred hhhhccHHHHHHHH----hcC-----CCeEEechhhhHHH-HHHHHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHHhh
Q 007386 212 IKASIGFRHVIDLL----SSE-----KKLIVGHNCFLDIA-HIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLN 278 (605)
Q Consensus 212 l~~~iGfr~v~~~l----~~s-----~kpiVgHN~~~Dl~-~l~~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L~~ 278 (605)
+.++.-|..|++.+ ... +.++||||.-+|+. +|-+.| +| ++|. ++..++||+.++.
T Consensus 79 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~-----------~~~~~~dt~~l~~ 147 (204)
T 1w0h_A 79 VDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYG 147 (204)
T ss_dssp HHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG-----------GGSEEEEHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc-----------cccceEEHHHHHH
Confidence 34445555555543 222 24699999999996 887665 22 3332 2335789988865
Q ss_pred hchhHHHhhccCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHH
Q 007386 279 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 358 (605)
Q Consensus 279 ~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~ 358 (605)
.. + .. .....+|..+.+.+ .++ ..+..|.|-.||..|+.+|.+|..
T Consensus 148 ~~--~-~~-~~~~~~L~~l~~~~-----------------------gi~-------~~~~~H~Al~Da~~ta~l~~~l~~ 193 (204)
T 1w0h_A 148 NF--Y-KV-PRSQTKLTIMLEKL-----------------------GMD-------YDGRPHCGLDDSKNIARIAVRMLQ 193 (204)
T ss_dssp HH--H-TC-CGGGCSHHHHHHHT-----------------------TCC-------CCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HH--h-CC-CCccchHHHHHHHc-----------------------CCC-------CCCCccCcHHHHHHHHHHHHHHHH
Confidence 31 1 10 01235677764432 011 124679999999999999999977
Q ss_pred Hh
Q 007386 359 HL 360 (605)
Q Consensus 359 ~l 360 (605)
..
T Consensus 194 ~~ 195 (204)
T 1w0h_A 194 DG 195 (204)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=95.96 E-value=0.011 Score=56.42 Aligned_cols=101 Identities=19% Similarity=0.073 Sum_probs=57.8
Q ss_pred hccHHHHHHHHhc--CCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhc-cCC
Q 007386 215 SIGFRHVIDLLSS--EKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK-KSS 291 (605)
Q Consensus 215 ~iGfr~v~~~l~~--s~kpiVgHN~~~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~-~~~ 291 (605)
+.-|..+++.+.+ .+.++||||.-+|+-+|-.. +|. ..++||-.+...... ..+. ...
T Consensus 67 a~~~~~v~~~~~~~l~~~~lV~hn~~fD~~~L~~~----~~~-------------~~~idt~~~~~~~~~--~~~p~~~~ 127 (189)
T 1wlj_A 67 ATPFAVARLEILQLLKGKLVVGHDLKHDFQALKED----MSG-------------YTIYDTSTDRLLWRE--AKLDHCRR 127 (189)
T ss_dssp CEEHHHHHHHHHHHHTTSEEEESSHHHHHHHTTCC----CTT-------------CEEEEGGGCHHHHHH--HTC-----
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCcHHHHHHHHHh----CCC-------------CceechHhhhhhhhc--ccCCCCCC
Confidence 3444444443321 37899999999999776432 231 137899765321110 0110 135
Q ss_pred CChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhC
Q 007386 292 TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 361 (605)
Q Consensus 292 tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~lg 361 (605)
.+|..+.+.+ + . + ..+ ..+..|.|-.||++|+.+|.++...+.
T Consensus 128 ~~L~~l~~~~---l----------g-----i--~~~-------~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 128 VSLRVLSERL---L----------H-----K--SIQ-------NSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp CCHHHHHHHH---T----------C-----C--CCS-------CCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH---c----------C-----C--CCC-------CCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 6787775431 1 0 0 111 112489999999999999999987764
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=95.84 E-value=0.033 Score=52.77 Aligned_cols=98 Identities=24% Similarity=0.135 Sum_probs=63.7
Q ss_pred hhhhccHHHHHHHHhc--CCCeEEechhhhHHHHHHHHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHh
Q 007386 212 IKASIGFRHVIDLLSS--EKKLIVGHNCFLDIAHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR 286 (605)
Q Consensus 212 l~~~iGfr~v~~~l~~--s~kpiVgHN~~~Dl~~l~~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~ 286 (605)
+.++.-|..+++.+.+ .+.++||||.-+|+-+|-+.| +| +.| -..++||-.++... .
T Consensus 73 l~~~~~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~-------------~~~~iDt~~l~~~~---~-- 134 (186)
T 2p1j_A 73 LENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDW-------------ERPYIDTLALAKSL---L-- 134 (186)
T ss_dssp HTTCCBHHHHHHHHHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCC-------------CCCEEEHHHHHHHH---T--
T ss_pred HhcCCCHHHHHHHHHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCC-------------CCCEEeHHHHHHHH---h--
Confidence 4455666666665542 467999999999999988765 22 222 12478997776431 1
Q ss_pred hccCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHH
Q 007386 287 MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359 (605)
Q Consensus 287 ~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~ 359 (605)
..+..+|..+.+.+ .++ ....|.|..||..|+.+|.+|...
T Consensus 135 -~~~~~~L~~l~~~~-----------------------gi~--------~~~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 135 -KLRSYSLDSVVEKL-----------------------GLG--------PFRHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp -CCSCCSHHHHHHHT-----------------------TCC--------STTCCHHHHHHHHHHHHHHHHTTC
T ss_pred -hcCCCCHHHHHHHc-----------------------CCC--------CCCCcCHHHHHHHHHHHHHHHHHH
Confidence 23466787764432 011 123599999999999999998654
No 15
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=95.57 E-value=0.027 Score=55.33 Aligned_cols=85 Identities=25% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCeEEechhhhHHHHHHHHh--cCCCCCCHHHHHHHHHhhCC--CCcchhHHhhhchhHHHhhccCCCChHHHHHhhhh
Q 007386 228 EKKLIVGHNCFLDIAHIYSKF--FGPLPLTAEEFISSVNKYFP--HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303 (605)
Q Consensus 228 s~kpiVgHN~~~Dl~~l~~~F--~~pLP~~~~EFk~~l~~~FP--~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l~~ 303 (605)
.+.++||||.-+|+.+|-..| +| ++. .-|+ .++||..++... . +..+|..+.+.+.
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g-~~~----------~p~~~~~~~Dt~~la~~~------~--p~~~L~~l~~~~g- 192 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERAS-LKR----------NPFHPFATFDTAALAGLA------L--GQTVLSKACQTAG- 192 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTT-CCC----------CCEEEEEEEEHHHHHHHH------H--SCCSHHHHHHHHT-
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcC-CCC----------CCCCCCcEEEhHHHHHHH------h--CCCCHHHHHHHcC-
Confidence 477999999999999997766 22 210 0021 478998887531 1 2346777644320
Q ss_pred hcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 007386 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 304 ~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
+ .. ..+..|.|..||.+|+.+|.+|...+
T Consensus 193 ------------------i--~~--------~~~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 193 ------------------M--DF--------DSTQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp ------------------C--CC--------CTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------C--CC--------CCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 0 01 11368999999999999999998877
No 16
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.071 Score=44.99 Aligned_cols=61 Identities=18% Similarity=0.055 Sum_probs=48.8
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHHHhccc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
....+|+-+.|..++..+|++.|++.||.+ .+|..+- ...|||.|.+.+.|+..|..++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSC--RGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTE--EEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCe--EEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC
Confidence 345689999999999999999997449976 4455543 357999999999999988877653
No 17
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=95.47 E-value=0.042 Score=57.81 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred hhhhccHHHHHHH----HhcC-----CCeEEechhhhHHH-HHHHHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHHhh
Q 007386 212 IKASIGFRHVIDL----LSSE-----KKLIVGHNCFLDIA-HIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLN 278 (605)
Q Consensus 212 l~~~iGfr~v~~~----l~~s-----~kpiVgHN~~~Dl~-~l~~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L~~ 278 (605)
+.++.-|..|++. |... ++++||||.-+|+. +|-..| +| ++|. ++-.++||+.+..
T Consensus 197 v~~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~ 265 (349)
T 1zbu_A 197 VDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYG 265 (349)
T ss_dssp HHTSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-----------ccchHHHHHHHHH
Confidence 4455666666654 3333 16999999999999 887766 22 3342 1224789987753
Q ss_pred hchhHHHhhccCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHH
Q 007386 279 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 358 (605)
Q Consensus 279 ~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~ 358 (605)
. +.. ...+..+|..+.+.+ .++ ..+..|.|-.||..|+.+|.+|..
T Consensus 266 ~---~~~-~~~~~~~L~~l~~~~-----------------------gi~-------~~g~~HrAl~DA~ata~ll~~ll~ 311 (349)
T 1zbu_A 266 N---FYK-VPRSQTKLTIMLEKL-----------------------GMD-------YDGRPHCGLDDSKNIARIAVRMLQ 311 (349)
T ss_dssp H---HHT-CCGGGGSHHHHHHHT-----------------------TCC-------CCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred H---Hhc-CCCCCCCHHHHHHHc-----------------------CCC-------CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 111 011125677764432 011 124679999999999999999987
Q ss_pred Hh
Q 007386 359 HL 360 (605)
Q Consensus 359 ~l 360 (605)
..
T Consensus 312 ~~ 313 (349)
T 1zbu_A 312 DG 313 (349)
T ss_dssp TT
T ss_pred hc
Confidence 65
No 18
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.34 E-value=0.06 Score=46.15 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=49.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+..|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMR-EAGDV--CYADVYRDGTGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHG-GGSCE--EEEEEETTTEEEEEESSHHHHHHHHHHSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEecCCEEEEEECCHHHHHHHHHHHCc
Confidence 45699999999999999999996 78964 566776669999999999999998776654
No 19
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=95.15 E-value=0.038 Score=53.86 Aligned_cols=85 Identities=25% Similarity=0.400 Sum_probs=56.0
Q ss_pred CCCeEEechhhhHHHHHHHHh--cCCCCCCHHHHHHHHHhhC-C-CCcchhHHhhhchhHHHhhccCCCChHHHHHhhhh
Q 007386 228 EKKLIVGHNCFLDIAHIYSKF--FGPLPLTAEEFISSVNKYF-P-HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 303 (605)
Q Consensus 228 s~kpiVgHN~~~Dl~~l~~~F--~~pLP~~~~EFk~~l~~~F-P-~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l~~ 303 (605)
.+.++||||.-+|+-+|-+.| +| ++. .-| + .++||..|+.. + . +..+|..+.+.+
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g-~~~----------~p~~~~~~iDt~~l~~~---~---~--~~~~L~~l~~~~-- 183 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTG-IKR----------NPFHPFSSFDTATLAGL---A---Y--GQTVLAKACQAA-- 183 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHT-CCC----------CCEEEEEEEEHHHHHHH---H---H--SCCSHHHHHHHT--
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcC-CCc----------CCccccceeeHHHHHHH---H---c--CCCCHHHHHHHc--
Confidence 467899999999999988766 22 220 002 1 47899877653 1 1 234677664322
Q ss_pred hcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 007386 304 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 304 ~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
.++ ......|.|..||+.|+.+|.+|...+
T Consensus 184 ---------------------gi~------~~~~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 184 ---------------------GME------FDNREAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp ---------------------TCC------CCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCC------cCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 011 012368999999999999999998766
No 20
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.14 E-value=0.11 Score=42.81 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=47.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ ...|||.|.+.++++..+..++..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~~~-~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFE-QYGKV--LECDII-KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHH-TSSCE--EEEEEE-TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEE-CCEEEEEECCHHHHHHHHHHhcCC
Confidence 4589999999999999999996 78975 445554 889999999999999998877653
No 21
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.10 E-value=0.09 Score=43.47 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=47.4
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ ...|||.|.+.++++..+..++.
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~v--~~v~~~-~~~afV~f~~~~~a~~A~~~l~g 66 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFE-EYGPV--IECDIV-KDYAFVHMERAEDAVEAIRGLDN 66 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHH-TTSCC--CEEEEC-SSEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEE-CCEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999997 79976 345554 44999999999999998877665
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.07 E-value=0.066 Score=45.17 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=48.6
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
....+|+-+.|..++..+|+++|+ .||.+ ..|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFE-KYGRV--GDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA 78 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC
Confidence 345699999999999999999996 78875 45665532 57999999999999998876653
No 23
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.05 E-value=0.093 Score=43.29 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=47.4
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
....+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.|+..+..++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFS-KYGPI--ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 79 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHH-TTSCE--EEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCe--eEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 345689999999999999999996 79975 44555422 3799999999999998877654
No 24
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.05 E-value=0.12 Score=43.48 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=48.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|++.|+ .||.+ ..|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFS-KYGQI--SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-HHSCC--CEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999996 79986 35566533 38999999999999988777653
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.99 E-value=0.089 Score=44.45 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=48.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCc-------eEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET-------AVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddt-------sa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+. .|||.|.+.+.|+..+..++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFL-QAGPV--VNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHH-TTSCE--EEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 45699999999999999999996 78975 456665442 8999999999999988876653
No 26
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.97 E-value=0.056 Score=43.82 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=46.1
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHh
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLK 481 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~ 481 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ +...|||.|.+.++++..+..+
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~-~~G~i--~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFY-QFGEI--RTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHH-TTSCE--EEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred cEEEEcCCCCCCCHHHHHHHHH-hCCCE--eEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 4589999999999999999996 79975 445554 5789999999999999987755
No 27
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.95 E-value=0.054 Score=56.32 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=52.9
Q ss_pred CeEEech-hhhHHHHHHHHh--cC-CCC-CCHHHHHHHHHhhCCCCcchhHHhhhc-hh-HHHh-hccCCCChHHHHHhh
Q 007386 230 KLIVGHN-CFLDIAHIYSKF--FG-PLP-LTAEEFISSVNKYFPHIIDTKILLNSN-SI-LQQR-MKKSSTSLSKAFSVL 301 (605)
Q Consensus 230 kpiVgHN-~~~Dl~~l~~~F--~~-pLP-~~~~EFk~~l~~~FP~IyDTK~L~~~~-~~-l~~~-~~~~~tsL~~l~~~l 301 (605)
.++|||| .-+|+-+|-+.| +| ++| .. -.++||--++... .. +... ...++-+|..+++.+
T Consensus 119 ~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~------------~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l 186 (314)
T 3u3y_B 119 CCLVAHNGDRYDFPLLQTELARLSTPSPLDG------------TFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (314)
T ss_dssp EEEEETTTTTTHHHHHHHHHHTSSSCCTTTT------------CEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHH
T ss_pred cEEEEeCcHHHHHHHHHHHHHHcCCCCCCCC------------ceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHh
Confidence 6899999 699999999887 33 222 10 0145665433210 00 0000 011356788876542
Q ss_pred hhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 007386 302 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 302 ~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
. .++ ....|.|-.||++|+.+|.+++..+
T Consensus 187 ~----------------------gi~--------~~~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 187 Y----------------------WQA--------PTDSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp H----------------------SSC--------CSCSSSHHHHHHHHHHHHHSSHHHH
T ss_pred c----------------------CCC--------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 011 1257999999999999999987755
No 28
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.91 E-value=0.09 Score=43.27 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=47.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+- ..|||.|.+.++++..+..++.
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~~~~~~-~~afV~f~~~~~a~~A~~~l~g 65 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFE-RRGRV--IECDVVK-DYAFVHMEKEADAKAAIAQLNG 65 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHH-HHSCE--EEEEECS-SCEEEEESCHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-cCCCE--EEEEEEC-CEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 79985 4566654 4999999999999998877665
No 29
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.85 E-value=0.11 Score=44.67 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=45.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~ 479 (605)
...+|+-|+|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.++|+..|.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~-~~G~v--~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLE-DKGQV--LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHH-TSSCE--EEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHh-hcCCE--EEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 45699999999999999999996 79975 4566653 3689999999999999876
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.73 E-value=0.11 Score=43.82 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC--------ceEEEEecchhhHHHHHHHh-cc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--------TAVFVQFSRAEMVSKFLDLK-GS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd--------tsa~V~l~~~e~~~~~L~~~-~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..+ +.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFS-TFGEL--KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-ccCCe--EEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC
Confidence 45689999999999999999996 79975 45566544 58999999999999998887 44
No 31
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.70 E-value=0.13 Score=42.91 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ +...|||.|.+.++|+..+..++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g 75 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFD-RFGSI--RTIDHVKGDSFAYIQYESLDAAQAACAKMRG 75 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHH-TTSCE--EEEEECSSSCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEeCCCCEEEEEECCHHHHHHHHHHHCC
Confidence 34589999999999999999996 79975 455554 457999999999999998887665
No 32
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=94.68 E-value=0.083 Score=52.50 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=54.4
Q ss_pred CeEEechh-hhHHHHHHHHh--cCCCCCCHHHHHHHHHhhCC-CCcchhHHhhhchhHHHhh-----ccCCCChHHHHHh
Q 007386 230 KLIVGHNC-FLDIAHIYSKF--FGPLPLTAEEFISSVNKYFP-HIIDTKILLNSNSILQQRM-----KKSSTSLSKAFSV 300 (605)
Q Consensus 230 kpiVgHN~-~~Dl~~l~~~F--~~pLP~~~~EFk~~l~~~FP-~IyDTK~L~~~~~~l~~~~-----~~~~tsL~~l~~~ 300 (605)
.++||||+ -+|+.+|-+.| +| +|.. .-+ .++||--+++... +... ..++-+|..+.+.
T Consensus 119 ~~lVaHNav~FD~~fL~~~~~r~g-~~~~----------~~~~~~iDtl~l~r~l~--~~~~p~~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 119 CCLVAHNGDRYDFPLLQTELARLS-TPSP----------LDGTFCVDSIAALKALE--QASSPSGNGSRKSYSLGSIYTR 185 (242)
T ss_dssp EEEEETTTTTTHHHHHHHHHHTSS-SCCT----------TTTCEEEEHHHHHHHHH--HHHCC------CCCSHHHHHHH
T ss_pred CEEEEcCChHhhHHHHHHHHHHcC-CCCC----------ccCCeEeehHHHHHHHH--hhcCccccCCCCCcCHHHHHHH
Confidence 68999997 99999999887 33 2210 001 3568777665311 0000 0235678877543
Q ss_pred hhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 007386 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 301 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
+ + .++ ....|.|-.||.+|+.+|.++...+
T Consensus 186 ~---~-------------------gi~--------~~~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 186 L---Y-------------------WQA--------PTDSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp H---H-------------------SSC--------CSSTTSHHHHHHHHHHHHTSSHHHH
T ss_pred H---h-------------------CCC--------CCCCcChHHHHHHHHHHHHHHHHHH
Confidence 1 1 011 1236999999999999999987654
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=94.68 E-value=0.042 Score=46.82 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=51.6
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhccc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+.+|+-+.|..++..+|++.|+ .||...+.+|..+ |. ..|||.|.+.++|+..|+.++..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 357799999999999999999996 8998766566665 32 37999999999999998888763
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.65 E-value=0.11 Score=42.18 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=47.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFA-PFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 70 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 4589999999999999999996 79975 45566543 4899999999999998877665
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.59 E-value=0.14 Score=43.92 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=47.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++|+..|..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFA-PFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 79 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 45699999999999999999996 79975 45566543 4899999999999998776655
No 36
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=94.58 E-value=0.1 Score=45.48 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=49.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+..|||.|.+.++|+..+..++..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~v--~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMR-EAGDV--CYADVYRDGTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHG-GGSCE--EEEEECTTSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEecCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999996 78964 5666666699999999999999988877663
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=94.56 E-value=0.18 Score=41.33 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=46.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+|+-+.|..++..+|++.|+ .||.+. +|..+-+ ..|||.|.+.+.++..+..++..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~-~~G~v~--~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFN-ECGHVL--YADIKMENGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHH-TTSCEE--EEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCEE--EEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4589999999999999999996 789763 4444433 57999999999999988876653
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.56 E-value=0.16 Score=41.95 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=47.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.++..+..++..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFE-PFGKI--DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4589999999999999999996 78875 45666543 38999999999999998877663
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.50 E-value=0.14 Score=42.92 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC-----ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE-----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 80 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICK-AHGTV--KDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG 80 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--EEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC
Confidence 45589999999999999999996 78975 445554 33 5799999999999998877665
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=94.41 E-value=0.21 Score=42.10 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=48.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 79 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQ-PFGVI--DECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 79 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC
Confidence 35689999999999999999996 78975 45666543 58999999999999988877663
No 41
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.19 Score=41.90 Aligned_cols=57 Identities=16% Similarity=0.303 Sum_probs=47.5
Q ss_pred cceEEEeCCCC-cCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~-~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|. .++..+|++.|+ .||++.. |. |-...|||.|.+.++++..+..++.
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~--v~-i~~g~afV~f~~~~~A~~A~~~l~g 67 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQ--IN-IKNAFGFIQFDNPQSVRDAIECESQ 67 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHT-TTCCCCE--EE-EETTEEEEEESCHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH-hcCCEEE--EE-EeCCEEEEEECCHHHHHHHHHHcCC
Confidence 35689999997 999999999996 7998754 33 3588999999999999999887665
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=94.24 E-value=0.22 Score=41.96 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-|.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.+.|+..+..++.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 87 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFA-EYGEI--KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 87 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-ccCCe--EEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC
Confidence 45689999999999999999996 79976 445554 3 25799999999999998877665
No 43
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.22 E-value=0.12 Score=44.14 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=47.3
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC---ceEEEEecchhhHHHHHHHhcc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE---TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd---tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
....+|+-+.|..++..+|+++|+ .||.+. .|... +. ..|||.|.+.++|+..+..++.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~--~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 83 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFY-KYGAIR--DIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 83 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHG-GGSCEE--EEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCeE--EEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 345699999999999999999996 799763 34433 33 3899999999999999877765
No 44
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.20 E-value=0.26 Score=41.06 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=48.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEE-ecCceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYH-VDETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|++.|+ .||.+.+ .+.+ -....|||.|.+.++++..+..++..
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALR-ELGSVPL-RLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHH-HTTCCCS-EEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHH-hcCCEEE-EEEcCCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999996 8999854 3332 23578999999999999988777653
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.19 E-value=0.19 Score=42.34 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=47.9
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.+.|+..|..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFS-QIGPC--KSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 77 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHH-HHSCE--EEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCccCCHHHHHHHHH-hcCCE--eEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 35689999999999999999996 89975 45566543 5899999999999998886665
No 46
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=94.18 E-value=0.34 Score=41.62 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=47.3
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.+.|+..+..++..
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFE-PFGRI--ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHT-TTSCE--EEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 4589999999999999999996 78975 455554 3 248999999999999988876653
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.14 E-value=0.15 Score=43.86 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=46.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+. +|..+-+ ..|||.|.+.+.++..|..++.
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 89 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFM-PFGNVV--SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 89 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHG-GGSCCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCeE--EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC
Confidence 4589999999999999999996 799864 4444433 2799999999999998877665
No 48
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=94.13 E-value=0.2 Score=43.72 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=49.0
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHHHhccc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
....+|+-+.|..++..+|+++|+ .||.+. +|..+- ...|||.|.+.++++..+..++..
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~--~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFA-EFGTLK--KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHH-TTSCCS--EEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCee--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 456799999999999999999996 799763 455543 258999999999999988876653
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.13 E-value=0.16 Score=42.69 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=48.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+- ...|||.|.+.+.|+..+..++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFS-PFGTI--TSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTT-TTSCE--EEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 34589999999999999999996 78875 4566653 358999999999999988876653
No 50
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.09 E-value=0.14 Score=42.75 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=46.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFS-AYGPL--SELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHH-TTSCE--EEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 78975 45555433 4899999999999998877665
No 51
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.08 E-value=0.18 Score=41.65 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=47.4
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFL-QAGPL--TKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG 79 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCE--EEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999996 79975 45555433 4899999999999998876665
No 52
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.07 E-value=0.19 Score=43.33 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=47.9
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..++|+-+.|..++..+|+++|+ .||.+ .+|.-+ +...|||.|.+.++|...+..++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~-~fG~V--~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALE-KFGTI--CYVMMMPFKRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHT-TTSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 46799999999999999999996 79975 445444 568999999999999998876643
No 53
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=94.05 E-value=0.16 Score=42.91 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=47.9
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHHHhcc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
....+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 92 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFA-EFGTL--KKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 92 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 345699999999999999999996 79976 455554 2 34899999999999998876655
No 54
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.04 E-value=0.15 Score=42.24 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=46.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEE-E-ecCce--EEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVY-H-VDETA--VFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~-~-iddts--a~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|. . .|... |||.|.+.+.++..+..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g 76 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLV-QYGVV--ESCEQVNTDSETAVVNVTYSSKDQARQALDKLNG 76 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHH-HHSCE--EEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCCHHHHHHHHH-hcCCe--EEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 45589999999999999999996 79975 4553 3 34333 99999999999998876665
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.03 E-value=0.16 Score=41.26 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=44.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 480 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|.++-+ ..|||.|.+.++++..|..
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFT-KFGEV--VDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 34589999999999999999996 78875 45666522 3799999999999998755
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=94.01 E-value=0.23 Score=41.84 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=47.9
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-| ..|||.|.+.+.|+..+..++.
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFE-EFGKI--YELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHH-HHSCC--CEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 34589999999999999999996 79976 45555533 5899999999999998887765
No 57
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.98 E-value=0.23 Score=41.74 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=47.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+- ...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFG-QFGKI--LDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 77 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGG-GTSCE--EEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 34689999999999999999996 78975 4555553 35899999999999998876665
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=93.98 E-value=0.13 Score=42.49 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=45.4
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
+|+-+.|..++..+|++.|+ .||...|.+|..+-| ..|||.|.+.++++..+..++..
T Consensus 4 l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~ 68 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 68 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS
T ss_pred EEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC
Confidence 78889999999999999996 799433455665533 26999999999999988777763
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.97 E-value=0.13 Score=43.30 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=47.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFR-PFGSI--SRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 79 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTST-TTCCE--EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--EEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999996 78875 45566543 2799999999999998876665
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.97 E-value=0.15 Score=42.06 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=46.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||++ ..|..+-+ ..|||.|.+.++++..+..++.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFS-KYGKV--VKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTT-TTSCE--EEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 34589999999999999999996 78875 45566532 4799999999999998776654
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=93.94 E-value=0.2 Score=43.71 Aligned_cols=57 Identities=11% Similarity=0.157 Sum_probs=47.5
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 70 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFG-KHGPI--SEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG 70 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHH-TSSCC--SEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999996 79986 45566543 5999999999999998877665
No 62
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.93 E-value=0.21 Score=41.82 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=47.0
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHHHHHhccc
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
+|+-+.|..++..+|++.|+ .||++. +|..+- ...|||.|.+.++|+..+..++..
T Consensus 3 l~V~nLp~~~t~~~l~~~F~-~~G~i~--~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFS-YYGPLR--TVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHH-HHCCCS--EEEEESSSSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCeE--EEEEeeCCCCEEEEEECCHHHHHHHHHHHCCC
Confidence 78889999999999999996 799863 455553 589999999999999988876653
No 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.91 E-value=0.25 Score=41.23 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=46.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.++..|. ++.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~ 73 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFK-KFGVV--TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF 73 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHS-SSSCE--EEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC
Confidence 35689999999999999999996 68865 45666533 479999999999999887 443
No 64
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=93.89 E-value=0.26 Score=42.32 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=47.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC----ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|...+..++.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 69 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFG-KYGPI--RQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG 69 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 35689999999999999999996 78976 45555432 4899999999999998776665
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=93.84 E-value=0.17 Score=45.14 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=47.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-| ..|||.|.+.++|+..|..++.
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng 110 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFS-KYGPI--ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 110 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHT-TTSCE--EEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999996 78975 45566522 4899999999999998887765
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=93.81 E-value=0.18 Score=40.46 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=45.7
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 65 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFK-DFPSY--LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 65 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHT-TSTTE--EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC
Confidence 378999999999999999996 78875 455554 4 35799999999999998876654
No 67
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=93.80 E-value=0.19 Score=43.88 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=48.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.+.|+..+..++..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 87 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFA-EYGEI--KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 87 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 45699999999999999999996 78965 456664 3 459999999999999988876663
No 68
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.80 E-value=0.18 Score=45.04 Aligned_cols=57 Identities=7% Similarity=0.237 Sum_probs=48.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~ 482 (605)
...+|+-+.|..++..+|+++|+ .||.+. +|..+ |...|||.|.+.++|+..+..++
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~-~fG~V~--~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGL-PFGKVT--NLLMLKGKNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHT-TTSCCC--EEEEEGGGTEEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCEE--EEEEeCCCCEEEEEECCHHHHHHHHHHhc
Confidence 45689999999999999999996 899864 45544 66899999999999999887665
No 69
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.79 E-value=0.29 Score=40.86 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||+..|.+|. +-...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g 73 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVK-KIRDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSS
T ss_pred cCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEE-EeCCeEEEEeCCHHHHHHHHHHhCC
Confidence 35689999999999999999996 78554445554 4577999999999999998887765
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=93.79 E-value=0.14 Score=41.42 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=46.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe--------cCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV--------DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i--------ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+. +|..+ ....|||.|.+.++|+..+..++.
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~--~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFS-TYGKIK--MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 69 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH-TTSCEE--EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hCCCEE--EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC
Confidence 3589999999999999999996 789763 44442 345899999999999998886665
No 71
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=93.77 E-value=0.17 Score=43.13 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=47.9
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.++..+..++.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 90 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFC-DYGEI--KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 90 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 45699999999999999999996 78975 45666533 5899999999999998876655
No 72
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=93.75 E-value=0.12 Score=50.45 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=59.8
Q ss_pred hhhhhccHHHHHHHHhc--CCCeEEechh--------hhHHHHHH-HHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHH
Q 007386 211 SIKASIGFRHVIDLLSS--EKKLIVGHNC--------FLDIAHIY-SKF--FG-PLPLTAEEFISSVNKYFPHIIDTKIL 276 (605)
Q Consensus 211 ~l~~~iGfr~v~~~l~~--s~kpiVgHN~--------~~Dl~~l~-~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L 276 (605)
.+.++.-|..|++.+.+ .+.++||||. -+|+.+++ ..+ .| ++|. .|-..+|++-.
T Consensus 97 ~v~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~-----------~~~~~iD~~~~ 165 (224)
T 2xri_A 97 MVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVAD-----------YFKQWINLKKA 165 (224)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCG-----------GGSCEEEHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcc-----------cccceEeHHHH
Confidence 34455666666665432 2457899998 99999855 333 22 3332 12356785433
Q ss_pred hhhchhHHHhhccCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHH
Q 007386 277 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 356 (605)
Q Consensus 277 ~~~~~~l~~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL 356 (605)
.... +.. .+..+|..+.+.+ .++ ..+..|.|-.||..|+.+|.+|
T Consensus 166 ~~~~---~~~--~p~~~L~~l~~~~-----------------------gi~-------~~~~~H~Al~DA~~ta~l~~~l 210 (224)
T 2xri_A 166 YSFA---MGC--WPKNGLLDMNKGL-----------------------SLQ-------HIGRPHSGIDDCKNIANIMKTL 210 (224)
T ss_dssp HHHH---HTS--CCTTTHHHHHHHT-----------------------TCC-------CCSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHH---hcc--CCCCCHHHHHHHc-----------------------CCC-------CCCCCcChHHHHHHHHHHHHHH
Confidence 2211 111 1234566664322 011 1256799999999999999999
Q ss_pred HHH
Q 007386 357 CSH 359 (605)
Q Consensus 357 ~~~ 359 (605)
...
T Consensus 211 ~~~ 213 (224)
T 2xri_A 211 AYR 213 (224)
T ss_dssp HHT
T ss_pred HHc
Confidence 764
No 73
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=93.73 E-value=0.19 Score=40.88 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=45.1
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.++..+ .++.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g 69 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFH-GCGSV--NRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE 69 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHG-GGCCE--EEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC
Confidence 4589999999999999999996 78975 45666533 38999999999999876 4443
No 74
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.70 E-value=0.18 Score=43.38 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.|+..|..++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFE-GFGDI--EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHH-TTSCE--EEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 35689999999999999999996 78975 56666544 3899999999999998766554
No 75
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.22 Score=41.76 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=47.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||.+. +|..+ +...|||.|.+.++++..+..++.
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~-~~G~i~--~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 85 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQ-NFGFIL--DFKHYPEKGCCFIKYDTHEQAAVCIVALAN 85 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHH-TTSCCS--EEEEETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CEEEEcCCCcccCHHHHHHHHH-hCCCEE--EEEEecCCCEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 799864 45554 678999999999999998876654
No 76
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=93.69 E-value=0.19 Score=43.23 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=48.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+. +|..+ ...|||.|.+.++|+..+..++.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~--~v~i~-kg~afV~f~~~~~A~~Ai~~l~g 87 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFG-PFGPMK--EVKIL-NGFAFVEFEEAESAAKAIEEVHG 87 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHT-TTSCCC--EEEEE-TTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCEE--EEEEE-CCEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999996 799864 45555 89999999999999998877665
No 77
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.68 E-value=0.24 Score=41.38 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=48.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+++|+ .||.+. .|..+ +...|||.|.+.+.|+..+..++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~--~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFE-KYGKAG--EVFIHKDKGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTS-TTCCCS--EEEEETTTTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-hcCCeE--EEEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999996 799864 34443 6789999999999999988776653
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=93.64 E-value=0.16 Score=42.20 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=46.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 66 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCS-NVGPV--INLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG 66 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999996 78975 45666533 5799999999999998877665
No 79
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.62 E-value=0.16 Score=49.72 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=51.9
Q ss_pred CeEEechh-hhHHHHHHHHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhh------ccCCCChHHHHH
Q 007386 230 KLIVGHNC-FLDIAHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRM------KKSSTSLSKAFS 299 (605)
Q Consensus 230 kpiVgHN~-~~Dl~~l~~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~------~~~~tsL~~l~~ 299 (605)
.++||||. -+|+-+|-+.| +| ++|.. -.++||-.++.... +..+ ..++.+|..+.+
T Consensus 114 ~~lVahN~~~FD~~fL~~~~~~~g~~~~~~------------~~~iDt~~l~~~~~--~~~~p~~~~p~~~~~~L~~l~~ 179 (238)
T 1y97_A 114 ICLVAHNGFDYDFPLLCAELRRLGARLPRD------------TVCLDTLPALRGLD--RAHSHGTRARGRQGYSLGSLFH 179 (238)
T ss_dssp EEEEETTTTTTHHHHHHHHHHHHTCCCCTT------------CEEEEHHHHHHHHH--HHC----------CCSHHHHHH
T ss_pred CEEEecCchhhhHHHHHHHHHHcCCCCCCC------------CEEEEHHHHHHHHH--hccCccccCCCCCCCCHHHHHH
Confidence 78999999 99999998776 22 22210 13688876654321 1000 113567777654
Q ss_pred hhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 007386 300 VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 300 ~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
.+ + .++ ....|.|-.||.+|+.+|.+|...+
T Consensus 180 ~~---~-------------------gi~--------~~~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 180 RY---F-------------------RAE--------PSAAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HH---H-------------------SSC--------CC---CHHHHHHHHHHHHHHTHHHH
T ss_pred HH---h-------------------CCC--------CccCccHHHHHHHHHHHHHHHHHHH
Confidence 21 1 011 1246999999999999999987655
No 80
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=93.61 E-value=0.18 Score=43.80 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=45.6
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC----ceEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..++..+|+++|+ .||.+ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~-~~G~v--~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~ 67 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFS-AFGNI--LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 67 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCHHHHHHHHh-ccCCE--EEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC
Confidence 389999999999999999996 79975 445554 32 3699999999999998776655
No 81
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.51 E-value=0.15 Score=40.35 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=44.6
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhc
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~ 482 (605)
+|+-+.|..++..+|++.|+ .||++. +|..+-+ ..|||.|.+.++++..+...+
T Consensus 3 l~v~nlp~~~t~~~l~~~F~-~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFG-QFGEVK--ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHT-TTSCCC--CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCEE--EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 78889999999999999996 789864 4455432 489999999999999887766
No 82
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=93.48 E-value=0.2 Score=40.32 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=46.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 71 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFI-PFGDI--TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 71 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHh-ccCCE--EEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC
Confidence 34699999999999999999996 79975 445543 3 45799999999999998876655
No 83
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=93.46 E-value=0.14 Score=45.96 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=47.4
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
....+|+-+.|..++..+|++.|+ .||.+ ..|..+-+ ..|||.|.+.++++..|..++.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i--~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 111 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFE-KYGRV--GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 111 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHG-GGSCC--SEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 345699999999999999999996 79976 35565533 2799999999999998776555
No 84
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.43 E-value=0.2 Score=42.27 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=46.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+ ...|||.|.+.++++..+..++.
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~-~~G~i--~~v~~~-~~~afV~f~~~~~a~~A~~~l~g 67 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFS-QFGKL--ERVKKL-KDYAFIHFDERDGAVKAMEEMNG 67 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHH-HHSCE--EEEEEC-SSCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEE-CCEEEEEeCCHHHHHHHHHHHCC
Confidence 4589999999999999999996 79975 344443 56999999999999998887665
No 85
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.42 E-value=0.21 Score=42.40 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=47.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~ 482 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|+..|..++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQ-QFGDL--KYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 34589999999999999999996 79975 455554 2 3479999999999999988876
No 86
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.41 E-value=0.36 Score=40.11 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=46.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+.. +|..+-+ ..|||.|.+.++++..+..++.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 74 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFA-TMGETVM-SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING 74 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHH-HTTCCCC-EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC
Confidence 4589999999999999999996 7998641 4555433 4799999999999998876665
No 87
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=93.40 E-value=0.22 Score=40.07 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=43.9
Q ss_pred eEEEeCCCCcC------cHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHL------KAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~------k~~dI~~~~sk~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..+ +..+|++.|+ .||++ .+|..+. ...|||.|.+.++|+..+..++.
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKI--TNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCE--EEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCe--EEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC
Confidence 48888999988 6699999996 79975 4555443 35899999999999987665554
No 88
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.38 E-value=0.3 Score=40.99 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=44.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 480 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.++..|..
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFS-TFGEV--LMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHG-GGSCE--EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCEEEEEcCCCcCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34589999999999999999996 79975 45555433 2799999999999998763
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.36 E-value=0.18 Score=43.00 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=48.4
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ |...|||.|.+.+.|+..+..++.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g 83 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFS-PFGQI--MEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 83 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHH-HHSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeCCCCEEEEEECCHHHHHHHHHHcCC
Confidence 34589999999999999999996 79975 455554 578999999999999998877655
No 90
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.33 E-value=0.078 Score=44.27 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=43.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhC-CCceeEEEEe-c------CceEEEEecchhhHHHHHHHh
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLK 481 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg-~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~ 481 (605)
++||+-|.|..++..+|++.|+ .|| .+ .+|..+ | ...|||.|.+.++|+..|..+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~-~~G~~v--~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQ-SHGVQA--REVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHH-HHTCCC--SBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCEe--EEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 5799999999999999999996 788 44 234443 2 246999999999999987654
No 91
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.30 E-value=0.3 Score=42.28 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=48.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..++|+-+.|..++..+|+++|+ .||.+ .+|.-+ +...|||.+.+.++|+..++.++.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~-~fG~V--~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQ-EFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHh-ccCCE--EEEEEEcCCCEEEEEECCHHHHHHHHHHhcC
Confidence 35689999999999999999996 89986 444444 678999999999999998887765
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.26 E-value=0.24 Score=42.57 Aligned_cols=57 Identities=7% Similarity=0.228 Sum_probs=46.9
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~ 482 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|.-+ |...|||.|.+.++|+..+..++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~-~fG~v--~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGL-PFGKV--TNILMLKGKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTT-TTSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEECCCCEEEEEECCHHHHHHHHHHhc
Confidence 45689999999999999999996 79975 455444 56899999999999999877654
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=93.20 E-value=0.18 Score=39.74 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=41.7
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHH
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~ 479 (605)
+|+-+.|..++..+|++.|+ .||++. +|..+-+ ..|||.|.+.+.++..|.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~-~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFE-QFGKVD--DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHH-TTSCCS--EECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EEEecCCCCCCHHHHHHHHH-hcCCEE--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 67889999999999999997 789863 4555432 389999999999988765
No 94
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.17 E-value=0.15 Score=42.16 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=46.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEE-EEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISV-YHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v-~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+. .| ..+ | ...|||.|.+.++|+..+..++.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~--~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 70 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFS-AFGVIL--QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 70 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH-TTSCBS--SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCee--EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC
Confidence 4589999999999999999996 799863 33 333 3 35899999999999998876655
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.13 E-value=0.31 Score=41.63 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=46.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~-~~G~i--~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFS-MAGVV--VRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 34589999999999999999996 78865 45555432 4899999999999998876655
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.03 E-value=0.22 Score=43.49 Aligned_cols=57 Identities=7% Similarity=0.225 Sum_probs=47.4
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~ 482 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|.-+ |...|||.|.+.++|+..+..++
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~-~fG~V--~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGL-PFGKV--TNLLMLKGKNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHH-HHCCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEcCCCEEEEEECCHHHHHHHHHHhc
Confidence 34589999999999999999996 89986 455554 67899999999999999877554
No 97
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.01 E-value=0.19 Score=40.63 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=46.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++++..+..++.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQ-PYGKI--VSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTST-TTSCE--EEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 4589999999999999999996 78875 455554 3 24799999999999998876665
No 98
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.00 E-value=0.24 Score=40.80 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=47.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCC-CceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGP-TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~-~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||. +.. +.......|||.|.+.++|+..+..++.
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFG-DRKLPLAG--QVLLKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHH-HTTCCCSS--CEEEETTEEEECCSCHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HcCCceEE--EEEcCCCEEEEEECCHHHHHHHHHHccC
Confidence 3489999999999999999996 7998 544 3346789999999999999998877665
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.96 E-value=0.14 Score=44.12 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=47.7
Q ss_pred ccceEEEeCCCCcCcHHHHH---HHHHhhhCCCceeEEEEecC----------ceEEEEecchhhHHHHHHHhcc
Q 007386 422 FECIVIVWGFPSHLKAWDIR---ECISKVYGPTSVISVYHVDE----------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~---~~~sk~fg~~~v~~v~~idd----------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+.+|+-+.|..++..+|+ ++|+ .||.+ ..|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i--~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKI--HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCE--EEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCE--EEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence 45679999999999999999 8886 78876 44555533 2899999999999998887665
No 100
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=92.95 E-value=0.29 Score=44.46 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=47.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...||+-+.|..++..+|+++|+ .||.+ .+|.++-+ ..|||.|.+.+.|+..|..++.
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 103 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFS-KSGDI--KKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45699999999999999999996 79975 45666432 3899999999999998887665
No 101
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=92.95 E-value=0.5 Score=39.37 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=46.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeE------EEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVIS------VYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~------v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-|.|..++..+|++.|+ .||.+.... |..+ |. ..|||.|.+.++++..+..++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 45699999999999999999996 789864300 3333 32 3899999999999998877665
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=92.88 E-value=0.22 Score=43.00 Aligned_cols=58 Identities=17% Similarity=0.343 Sum_probs=46.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++++..+..++.
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFL-PFGNV--ISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTT-TSCEE--EEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999996 68864 456665 3 24899999999999998776654
No 103
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.85 E-value=0.33 Score=40.27 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=45.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c---------CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D---------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d---------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+. +|..+ | ...|||.|.+.++|+..+..++.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~--~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFS-KVGAIK--SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 72 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHH-TTSCEE--EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeE--EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3489999999999999999996 799763 44443 2 24899999999999998776655
No 104
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.84 E-value=0.33 Score=40.75 Aligned_cols=57 Identities=16% Similarity=0.319 Sum_probs=47.2
Q ss_pred cceEEEeCCCC-cCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~-~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|. .++..+|++.|+ .||.+. +|. |-...|||.|.+.++|+..+..++.
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~--~v~-i~~g~afV~f~~~~~A~~Ai~~l~g 79 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFS-PYGHIM--QIN-IKNAFGFIQFDNPQSVRDAIEXESQ 79 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHG-GGSCEE--EEE-ECSSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH-hcCCEE--EEE-EeCCEEEEEECCHHHHHHHHHHcCC
Confidence 45689999997 999999999996 799753 333 3589999999999999998877655
No 105
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.83 E-value=0.42 Score=40.03 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=46.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+. +|..+ | ...|||.|.+.++|+..+..++.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~-~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 72 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFS-EVGPVV--SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 72 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHH-TTSCCS--EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS
T ss_pred cEEEEeCCCCcCCHHHHHHHHH-hcCCee--EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 799864 34443 3 35899999999999998877665
No 106
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=92.81 E-value=0.33 Score=41.15 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=45.1
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..++..+|+++|+ .||++ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFS-SIGEV--ESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCE--EEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 388999999999999999996 79975 455554 32 2699999999999998776654
No 107
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=92.75 E-value=0.36 Score=41.15 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=47.7
Q ss_pred ceEEEeCCCCc-CcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~-~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|.. ++..+|+++|+ .||.+.- | .|....|||.|.+.++|+..+..++.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~--v-~i~~g~afV~f~~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFS-KYGRVAG--C-SVHKGYAFVQYSNERHARAAVLGENG 84 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHG-GGSCCSE--E-EEETTEEEEECSSSHHHHHHHHHHTT
T ss_pred cEEEEeCCCcccCCHHHHHHHHH-hCCCeEE--E-EEeCCEEEEEECCHHHHHHHHHHcCC
Confidence 46899999999 99999999996 7998754 3 33889999999999999998877665
No 108
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=92.70 E-value=0.3 Score=45.00 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=48.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ ..|.++-+ ..|||.|.+.+.|+..|..++.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFC-DYGEI--KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhh-cCCCE--EEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence 45699999999999999999996 79976 45666533 6899999999999998877665
No 109
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.70 E-value=0.31 Score=41.74 Aligned_cols=58 Identities=10% Similarity=0.217 Sum_probs=47.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.+.++..|..++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLK-PFGQV--ISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTT-TTSCE--EEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 35689999999999999999996 78875 45555433 4799999999999998887665
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=92.66 E-value=0.46 Score=42.09 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=47.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ | ...|||.|.+.+.|+..+..++..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFE-RYGPI--ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHH-HHSCE--EEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34589999999999999999996 79975 455554 3 237999999999999988876653
No 111
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.64 E-value=0.22 Score=43.03 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=47.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+.+|+-+.|..++..+|+++|+ .||++ .+|..+ +...|||.|.+.++|+..+..++.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~-~~G~i--~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g 68 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFS-RFGSL--GRVLLPEGGITAIVEFLEPLEARKAFRHLAY 68 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCSSSSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 45688889999999999999997 79976 344433 667899999999999998777765
No 112
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.63 E-value=0.3 Score=41.15 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=44.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 480 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..|..
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFS-QYGEV--VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHH-TTSCE--EEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4588999999999999999996 78975 45555543 3899999999999998877
No 113
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.62 E-value=0.35 Score=40.99 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=45.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe--------cCceEEEEecchhhHHHHHHHhc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV--------DETAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i--------ddtsa~V~l~~~e~~~~~L~~~~ 482 (605)
..+|+-+.|..++..+|++.|+ .||.. |.+|.++ ....|||.|.+.++++..+..++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~-~~G~~-v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIA-KVTEG-VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHH-HHSTT-EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CEEEEeCCCCcCCHHHHHHHHH-HhcCC-ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 4589999999999999999996 78861 3566665 23589999999999998876653
No 114
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=92.61 E-value=0.34 Score=43.24 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=46.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+.+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..|..++.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~-~~G~i--~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 66 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFG-SIGEI--ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 66 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ceEEEcCCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC
Confidence 3589999999999999999996 79975 45555433 5899999999999999887665
No 115
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.57 E-value=0.39 Score=44.32 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=49.4
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||++.|.+|..+-| ..|||.|.+.++|+..|..++.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng 121 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG 121 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 4599999999999999999996 899655677777633 2699999999999998877665
No 116
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=92.47 E-value=0.22 Score=40.29 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=45.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhh----CCC-----ceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVY----GPT-----SVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~f----g~~-----~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .| |.. .|.++... |...|||.|.+.++|+..+ .++.
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCC
Confidence 4589999999999999999996 67 621 23445443 5789999999999999887 5554
No 117
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=92.40 E-value=0.32 Score=40.22 Aligned_cols=58 Identities=12% Similarity=0.215 Sum_probs=46.2
Q ss_pred cceEEEeCCCCcCcHHHHH----HHHHhhhCCCceeEEEEe----cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHV----DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~----~~~sk~fg~~~v~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+ +.|+ .||.+ .+|..+ ....|||.|.+.++++..+..++.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i--~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFS-RFGQI--LDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCE--EEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCE--EEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 3568999999999999999 8885 78865 344443 246899999999999998877665
No 118
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.32 E-value=0.39 Score=40.40 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=44.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .|| |.+|..+-+ ..|||.|.+.+.++..| .++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 77 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFK-DLS---IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 77 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTT-TSC---EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH-hCC---ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC
Confidence 45689999999999999999986 555 566677633 27999999999999987 4443
No 119
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.29 E-value=0.27 Score=40.55 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=45.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+....+..-.+ ..|||.|.+.++++..+..++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 79 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND 79 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 5689999999999999999996 788864222222222 4699999999999998876665
No 120
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.14 E-value=0.3 Score=42.20 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=47.7
Q ss_pred cceEEEeCCCC-cCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~-~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|. .++..||+++|+ .||.+ .+|.-+ |...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~-~fG~V--~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVE-PFGVI--SNHLILNKINEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTG-GGSCE--EEEEECSSSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHH-hcCCE--EEEEEEcCCCEEEEEECCHHHHHHHHHHHcC
Confidence 45688999999 999999999996 89975 445444 567899999999999998877664
No 121
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.08 E-value=0.33 Score=42.79 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=49.7
Q ss_pred CcccccceEEEeCCCCc-CcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 418 PKILFECIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 418 p~~~~~~~v~~~~fp~~-~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
+...+...+|+-+.|.. ++..+|+++|+ .||.+. +|..+ +...|||.|.+.++|+..+..++.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~--~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIK--NYILMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCS--EEEEETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEE--EEEEecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 33344667999999997 99999999996 899864 44444 568899999999999998876653
No 122
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.06 E-value=0.41 Score=40.29 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=44.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC--------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd--------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .|| |.+|..+-+ ..|||.|.+.+.++..| .++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 78 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFR-GLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE 78 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTT-TSC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-HCC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC
Confidence 35689999999999999999986 677 456666522 27999999999999988 5554
No 123
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=91.98 E-value=0.56 Score=44.15 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=48.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFA-EFGTL--KKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHH-HTSCC--SEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 45699999999999999999997 79986 35555432 57999999999999988776653
No 124
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.95 E-value=0.28 Score=41.04 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=46.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+. +|..+ | ...|||.|.+.+.|+..+..++.
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~-~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFI-PFGDIT--DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 76 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHT-TTSCCC--CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHhh-ccCCEE--EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 799864 34443 3 34799999999999998876655
No 125
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=91.94 E-value=0.23 Score=51.22 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=62.1
Q ss_pred hhhhhccHHHHHHHHhc--CCCeEEechh------hhHH-HHHHHHh--cC-CCCCCHHHHHHHHHhhCCCCcchhHHhh
Q 007386 211 SIKASIGFRHVIDLLSS--EKKLIVGHNC------FLDI-AHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLN 278 (605)
Q Consensus 211 ~l~~~iGfr~v~~~l~~--s~kpiVgHN~------~~Dl-~~l~~~F--~~-pLP~~~~EFk~~l~~~FP~IyDTK~L~~ 278 (605)
.+.++.-|..|++.+.. .+.++||||. -+|+ .+|-+.| .| ++|. +|...+||.-++.
T Consensus 88 ~v~~ap~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~ 156 (308)
T 3cg7_A 88 SIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPA-----------FFRQYINLYKIFT 156 (308)
T ss_dssp HHHTSCBHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCG-----------GGSEEEEHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCch-----------hhcceeeHHHHHH
Confidence 35556667777665432 2334678887 7899 5776555 22 3332 2234689988765
Q ss_pred hchhHHHhhc----cCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHH
Q 007386 279 SNSILQQRMK----KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 354 (605)
Q Consensus 279 ~~~~l~~~~~----~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~ 354 (605)
.. + .... .+..+|..+.+.+ .++ ..+..|.|-.||..|+.+|.
T Consensus 157 ~~--~-~~~~~~~~~~~~~L~~l~~~~-----------------------gi~-------~~~~~HrAl~DA~ata~l~~ 203 (308)
T 3cg7_A 157 NE--M-DRMGPKELSATTNIGKMNEYY-----------------------DLP-------TIGRAHDAMDDCLNIATILQ 203 (308)
T ss_dssp HH--H-HHHCCCCCCCCSHHHHHHHHT-----------------------TCC-------CCSCTTCHHHHHHHHHHHHH
T ss_pred HH--h-ccccccccccCcCHHHHHHHc-----------------------CCC-------CCCCCcCHHHHHHHHHHHHH
Confidence 32 1 1111 0134577664322 011 12456999999999999999
Q ss_pred HHHHH
Q 007386 355 QACSH 359 (605)
Q Consensus 355 kL~~~ 359 (605)
+|...
T Consensus 204 ~l~~~ 208 (308)
T 3cg7_A 204 RMINM 208 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98764
No 126
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.73 E-value=0.48 Score=39.19 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=44.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-c--eEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-T--AVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-t--sa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+| .+|. + .|||.|.+.+.++..+. ++.
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~-~~G~v--~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFL-AFGPV--ASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGG-GTSCE--EEE-EECSSSCCEEEEEESSHHHHHHHHT-CSC
T ss_pred CEEEEECCCCCCCHHHHHHHHH-hcCCe--EEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCC
Confidence 3589999999999999999996 78975 456 4554 3 79999999999999876 544
No 127
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=91.65 E-value=0.68 Score=41.70 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=49.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+- ...|||.|.+.++++..+..++..
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFG-YYGPL--RSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHH-HHSCE--EEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hhCCE--EEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 35689999999999999999997 79975 4566653 589999999999999988877663
No 128
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=91.62 E-value=0.68 Score=43.11 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=21.3
Q ss_pred CcccchhhhHHHHHHHHHHHHHHh
Q 007386 337 GVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 337 ~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
+..|.|-.||++|+.+|..+...+
T Consensus 154 ~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 154 QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999998766
No 129
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=91.61 E-value=0.55 Score=41.34 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=47.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec-------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id-------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+- ...|||.|.+.++|+..+..++.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFI-PFGDI--TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHH-hcCCE--EEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999996 78975 4555542 35799999999999998776654
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=91.57 E-value=0.27 Score=41.41 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=45.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC--------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd--------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .|| |.+|..+-+ ..|||.|.+.++++..| .++.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~-~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g 82 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFR-GLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE 82 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSC-SSC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC
Confidence 45689999999999999999986 677 466776543 38999999999999987 5554
No 131
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.49 E-value=0.49 Score=40.50 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c----CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-|.|..++..+|++.|+ .||.+. +|..+ | ...|||.|.+.++|+..+..++.
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~-~~G~i~--~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g 91 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFG-QFGKIL--DVEIIFNERGSKGFGFVTFENSADADRAREKLHG 91 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGG-GTCCCS--CEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcCCHHHHHHHHH-hcCCEE--EEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC
Confidence 34589999999999999999996 799864 34554 3 46899999999999998876654
No 132
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.45 E-value=0.56 Score=38.83 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=45.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+.-..+..-. ...|||.|.+.++++..+..++.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 79 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND 79 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 34589999999999999999996 78986421122212 24699999999999998876664
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=91.42 E-value=0.25 Score=38.84 Aligned_cols=52 Identities=25% Similarity=0.382 Sum_probs=42.5
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHH
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~ 480 (605)
+|+-+.|..++..+|++.|+ .||++. +|.++ | ...|||.|.+.+.++..+..
T Consensus 2 l~v~nLp~~~t~~~l~~~F~-~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFG-GFGEVE--SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHH-HHSCCS--EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCeE--EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 67889999999999999997 799863 45554 2 34899999999999988664
No 134
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=91.39 E-value=0.51 Score=40.85 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=46.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~-~~G~i--~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng 70 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCR-KYGEV--EEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL 70 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCCHHHHHHHHH-hcCCe--eEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999996 79976 445443 33 2699999999999998777665
No 135
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.33 E-value=0.42 Score=40.91 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=46.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+ ..|..+ | ...|||.|.+.+.|+..| .++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFS-AVGKV--RDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCE--eEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC
Confidence 45699999999999999999996 78865 456665 2 237999999999999988 6554
No 136
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=91.24 E-value=0.56 Score=45.98 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=47.1
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||...|.+|..+-| ..|||.|.+.+.|+..|..++.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng 134 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 134 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 3589999999999999999996 899444567776644 2699999999999887665554
No 137
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=91.15 E-value=0.69 Score=43.38 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=51.4
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-------cCceEEEEecchhhHHHHHHHhcccccCCCCccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-------DETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISV 493 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-------ddtsa~V~l~~~e~~~~~L~~~~~~~~~~~~~~~ 493 (605)
...||+-+.|..++..+|++.|+ .||.+ .+|..+ ....|||.|.+.++|+..|..++...=.+..+.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFA-PFGPI--KSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hCCCE--EEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 34699999999999999999996 78975 455554 2468999999999999998877664333333333
No 138
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.14 E-value=0.44 Score=41.66 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=44.8
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
....||+-+.|..++..+|+++|+ .||.+....+..-+. ..|||.|.+.++|+..|. ++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g 88 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK 88 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC
Confidence 345699999999999999999996 788763211222222 369999999999999877 544
No 139
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.11 E-value=0.63 Score=42.07 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=48.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-| ..|||.|.+.+.++..|..++..
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~-~~G~v--~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFE-KYGRV--GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHH-HHSCE--EEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 45699999999999999999996 89975 45666543 27999999999999988876653
No 140
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=90.99 E-value=0.45 Score=40.84 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=45.5
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~ 482 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.++..|....
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~-~~G~i--~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFG-QFGEV--KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-ccCCe--EEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 3489999999999999999996 78975 45666533 389999999999999876543
No 141
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.98 E-value=1.1 Score=38.10 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=47.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCc-e-eEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-V-ISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~-v-~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+. + ..+.++. ...|||.|.+.+.|+..+..++.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999996 788762 1 2445553 35899999999999998877665
No 142
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=90.90 E-value=0.39 Score=41.74 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=45.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.+.++..| .++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g 99 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFS-SCGSI--NRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE 99 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHH-TTSCE--EEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC
Confidence 35699999999999999999997 78975 445554 3 348999999999999987 4443
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=90.86 E-value=0.44 Score=39.91 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=44.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~ 479 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++++..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFA-RYGSV--KEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--EEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 34589999999999999999996 79976 45555533 689999999999988765
No 144
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.86 E-value=0.21 Score=43.12 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=45.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c---------CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D---------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d---------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+. +.++ | ...|||.|.+.++|+..|..+..
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~-~~G~i~---~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~ 74 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFR-RFGPLV---VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE 74 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTT-TTCCCC---EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE
T ss_pred CEEEEcCCCCCCCHHHHHHHHH-hcCCEE---EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh
Confidence 3489999999999999999996 799875 3554 2 24799999999999998877644
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=90.85 E-value=0.46 Score=42.65 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=46.5
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 67 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFR-AIGPI--NTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG 67 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHH-TTSCE--EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC
Confidence 4589999999999999999996 79975 44555422 3799999999999999886655
No 146
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.82 E-value=0.48 Score=45.81 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=48.9
Q ss_pred cceEEEeCCCC-cCcHHHHHHHHHhhhCCCceeEEEEe-c-CceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHV-D-ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~-~~k~~dI~~~~sk~fg~~~v~~v~~i-d-dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|. .++..+|+++|+ .||.+ .+|..+ | .+.|||.|.+.++|+..+..++..
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~-~~G~i--~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~ 95 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFG-VYGDV--QRVKILFNKKENALVQMADGNQAQLAMSHLNGH 95 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHH-HHTCE--EEEEECCTTSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH-hCCCe--EEEEEEECCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45699999999 999999999996 89985 456665 3 368999999999999998877663
No 147
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.78 E-value=0.47 Score=40.77 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=45.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 480 (605)
...+|+-+.|..++..+|+++|+ .||.+. .|..+-+ ..|||.|.+.+.|+..|..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~-~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYE-QWGKLT--DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHT-SSCCCS--EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCEE--EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 35689999999999999999996 799863 4555533 3899999999999988765
No 148
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=90.70 E-value=0.7 Score=39.19 Aligned_cols=58 Identities=10% Similarity=0.199 Sum_probs=46.1
Q ss_pred cceEEEeCCCCcC------cHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHL------KAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~------k~~dI~~~~sk~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+.+|+-+.|..+ +..+|++.|+ .||.+ .+|..+. ...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v--~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKI--TNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCE--EEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCE--EEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4569999999988 6789999996 79975 4555443 25899999999999998776655
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=90.68 E-value=0.5 Score=42.12 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=46.4
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhccc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
.+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 64 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQ-VGGPI--ANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK 64 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHG-GGSCE--EEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcCCHHHHHHHHH-hcCCe--EEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC
Confidence 378999999999999999996 79975 45666522 36999999999999998776653
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.38 E-value=0.83 Score=42.11 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=45.5
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 480 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..|..
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFE-QWGTL--TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 45699999999999999999996 79975 45555532 3899999999999999866
No 151
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=90.38 E-value=0.86 Score=41.01 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=46.0
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe---------cCceEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV---------DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i---------ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..++..+|++.|+ .||++ .+|..+ ....|||.|.+.++|+..+..++.
T Consensus 5 ~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 69 (175)
T 3nmr_A 5 KMFVGQVPRTWSEKDLRELFE-QYGAV--YEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN 69 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 489999999999999999996 79975 445543 224799999999999999887765
No 152
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.30 E-value=1.1 Score=36.43 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=43.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCc-----eEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DET-----AVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddt-----sa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .|+. .+|..+ |.+ .|||.|.+.++++..|. ++.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~-~~~i---~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g 71 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLA-PLKP---VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR 71 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHT-TSCC---SEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS
T ss_pred ccEEEEECCCCCCCHHHHHHHHh-hCCc---eEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC
Confidence 45689999999999999999996 4533 344554 333 79999999999999887 554
No 153
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=90.27 E-value=0.39 Score=40.49 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred cceEEEeCCCC------cCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPS------HLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~------~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+.||+-|.|. .++..+|++.|+ .||++ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i--~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKV--VNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCE--EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCE--eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 46799999999 999999999997 79975 455543 33 4799999999999998877665
No 154
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=90.25 E-value=0.88 Score=40.92 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|...+..++.
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~-~~G~i--~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFS-SFGQI--EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEcCCCCcCCHHHHHHHHH-hCCCE--EEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 45689999999999999999996 89985 44555432 2599999999999998877765
No 155
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=90.23 E-value=0.89 Score=43.17 Aligned_cols=24 Identities=13% Similarity=-0.100 Sum_probs=20.9
Q ss_pred CcccchhhhHHHHHHHHHHHHHHh
Q 007386 337 GVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 337 ~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
...|.|-.||..|+.+|..+...+
T Consensus 158 ~~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 158 SSAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcccHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999987765
No 156
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=90.18 E-value=0.5 Score=38.51 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=43.5
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec-------CceEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id-------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..++..+|++.|+ .||.+. +|..+- ...|||.|.+.+ ++..+..++.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g 64 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFS-QFGKVF--NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN 64 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHH-HHTCCS--EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS
T ss_pred EEEECCCCCCCCHHHHHHHHH-hcCCEE--EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC
Confidence 378889999999999999996 799864 445542 247999999999 8887666555
No 157
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.12 E-value=0.28 Score=40.00 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=41.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHH
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKF 477 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~ 477 (605)
..+|+-+.|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.++|+.+
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFS-QYGDV--MDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHST-TTSCC--CEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HcCCe--eEEEEecCCCCEEEEEECCHHHHHHH
Confidence 4589999999999999999996 79986 3455553 47899999999999753
No 158
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.98 E-value=1.2 Score=36.87 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=46.3
Q ss_pred ceEEEeCCCCcCcHHHHH----HHHHhhhCCCceeEEEEe-c---CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHV-D---ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~----~~~sk~fg~~~v~~v~~i-d---dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+ +.|+ .||.+ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v--~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFA-RHGKV--KSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHH-HHSCE--EEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhcc-ccCcE--EEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC
Confidence 458999999999999999 8886 78875 455554 3 45799999999999998876665
No 159
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.68 E-value=0.44 Score=39.83 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=44.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe----cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV----DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+.+ ... ....|||.|.+.++++..+..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 75 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFE-KATFIKV---PQNQNGKSKGYAFIEFASFEDAKEALNSCNK 75 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCS-SCSEEEC---CBCSSSCBCSEEEEECSSHHHHHHHHHHTSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCEEEE---EECCCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999986 5775422 221 135899999999999998876665
No 160
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=89.37 E-value=0.43 Score=39.40 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=44.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|+++|+ .||.+.+ + ..+ ...|||.|.+.++|+..+..++.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~--~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g 75 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFE-DALEIRL--V-SQDGKSKGIAYIEFKSEADAEKNLEEKQG 75 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHC-SEEEECC--E-EETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-hCCcEEE--e-CCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 35689999999999999999996 5775543 2 222 24799999999999998887665
No 161
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=89.14 E-value=0.6 Score=39.74 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=43.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCc-eeEEEEe-cC-----ceEEEEecchhhHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-VISVYHV-DE-----TAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~-v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~ 479 (605)
...+|+-+.|..++..||++.|+ .||... |.+|..+ |. ..|||.|.+.++++..|.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 45689999999999999999996 777622 2234443 32 379999999999999877
No 162
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.94 E-value=0.89 Score=38.71 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=46.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCcee------EEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVI------SVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~------~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+... .|..+ | ...|||.|.+.+.|+..|..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999996 78987410 12332 4 23899999999999998887665
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=88.84 E-value=1.4 Score=39.40 Aligned_cols=58 Identities=14% Similarity=0.267 Sum_probs=46.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+++-+.|..++..+|++.|+ .||.+. +|..+ |. ..|||.|.+.++|...+..++.
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFG-KYGSIV--QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHT-SSSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEeCCCCCCCHHHHHHhhh-cCCcEE--EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 34689999999999999999996 788753 34433 32 4799999999999998887766
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=88.72 E-value=1.2 Score=41.59 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=47.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|...+..++..
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 190 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFE-AFGKI--KSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF 190 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHT-TSSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCcCCHHHHHHHHh-ccCCe--eEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC
Confidence 5689999999999999999996 78865 445554 3 247999999999999988877653
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=88.54 E-value=1.5 Score=38.92 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=46.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+++-+.|..++..+|++.|+ .||.+. ++..+ | ...|||.|.+.++|...+..++.
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFK-DFPSYL--SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHT-TSTTEE--EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCCCHHHHHHHHh-ccCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 34689999999999999999995 788753 44443 3 13699999999999998876655
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=88.51 E-value=1.5 Score=39.00 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=46.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+++-+.|..++..+|++.|+ .||.+. +|..+ |. ..|||.|.+.++|...+..++.
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFS-QYGRII--TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHG-GGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcEEECCCCCcCCHHHHHHHHH-hcCCEe--EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 34589999999999999999996 789753 34443 32 4699999999999998877665
No 167
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=88.51 E-value=1.3 Score=39.84 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=46.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+++-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLT-SFGPL--KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 158 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHH-TTSCE--EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHH-hcCCc--eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 34589999999999999999997 78976 34454433 3699999999999998776655
No 168
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=88.43 E-value=1.3 Score=39.43 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=44.6
Q ss_pred cceEEEeCCCCcCcHHHHH----HHHHhhhCCCceeEEEEe----cCceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHV----DETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~----~~~sk~fg~~~v~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+ ++|+ .||.+ .+|.-. ....|||.|.+.++|...+..++..
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I--~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALAS-SQGDI--LDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCE--EEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCe--EEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 3568999999999998876 5675 78876 344332 1258999999999999988777663
No 169
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=88.43 E-value=0.9 Score=42.26 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=48.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhC-CCceeEEEEe--cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV--DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg-~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+++.+.|..++..+|++.|+ .|| .+. +|..+ +...|||.|.+.++|...+..++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~--~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g 180 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFS-SNGGVVK--GFKFFQKDRKMALIQMGSVEEAVQALIDLHN 180 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHH-HTTSCCC--EEEESSTTSSCEEEECSSHHHHHHHHHHHTS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH-HcCCCce--EEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC
Confidence 45689999999999999999996 788 653 44543 678999999999999998887766
No 170
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.33 E-value=0.96 Score=37.67 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=43.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .|+ .|..+-+ ..|||.|.+.++|+..|..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~~-----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFD-GSV-----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 76 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTST-TCS-----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCccCHHHHHHHhc-CCe-----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 35589999999999999998876 332 3444432 4899999999999998887665
No 171
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.24 E-value=1.6 Score=36.18 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=43.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-++ .++..+|+++|+ .||.+ .+|... ....|||.|.+.++++..+..++.
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g 71 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFS-PFGNI--IDLSMDPPRNCAFVTYEKMESADQAVAELNG 71 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHT-TTSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEcCC--CCCHHHHHHHHh-hCCCE--EEEEecCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 345777775 789999999996 79975 344432 467999999999999998877665
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=88.14 E-value=1.4 Score=43.50 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=49.4
Q ss_pred ccceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 422 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 422 ~~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
....+|+-+.|..++..+|++.|+ .||.+. +|... +...|||.|.+.++|...+..++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~--~v~i~~~kg~afV~f~~~~~A~~A~~~l~g 80 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFE-RYGEPS--EVFINRDRGFGFIRLESRTLAEIAKAELDG 80 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTG-GGCCCS--EEEEETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCEE--EEEEeCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 356799999999999999999996 799874 34444 688999999999999998886654
No 173
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=88.11 E-value=0.89 Score=43.31 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=45.9
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe------cCceEEEEecchhhHHHHHHHhc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV------DETAVFVQFSRAEMVSKFLDLKG 482 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i------ddtsa~V~l~~~e~~~~~L~~~~ 482 (605)
...+|+-|+|..++..+|++.|+ .||++ .+|..+ ....|||.|.+.++|+..|...+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~-~~G~v--~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLE-DKGQV--LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHT-TSCCE--EEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHh-cCCCE--EEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC
Confidence 35699999999999999999996 79985 445444 23689999999999999876543
No 174
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=87.97 E-value=1.2 Score=38.76 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=45.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhC-CCceeEEEEe---cCceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV---DETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg-~~~v~~v~~i---ddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+|+-+.|..++..+|++.|+ .|| .+.. +.-+ ....|||.|.+.++|+..+..++..
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~--v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLAR-ENSLETTF--SSVNTRDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHH-HHTCCCSE--EECSSCSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred CEEEEECCCCCCCHHHHHHHHH-HhCCeeEE--EEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 4589999999999999999996 789 5532 3322 2568999999999999987766653
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=87.62 E-value=1 Score=43.21 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=48.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+.+.|.+++..+|+++|+ .||.+.+.+|.-+.+ ..+||.|.+.++|...|..++.
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICD-ELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHH-HHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred ceEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 4688999999999999999996 799874345565554 4799999999999998887776
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.57 E-value=0.7 Score=40.88 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=45.1
Q ss_pred ceEEE--eCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIV--WGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~--~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+ -|.|..++..+|++.|+ .||.+ .+|.-+ +...|||.|.+.++|+..+..++.
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v--~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLE-KCGLV--DALLMPPNKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHH-HHSCE--EEEECCTTCSCEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCCCCHHHHHHHHH-hcCCe--EEEEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 34777 67999999999999996 89975 344332 567999999999999998776665
No 177
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.55 E-value=1.9 Score=37.21 Aligned_cols=58 Identities=10% Similarity=0.265 Sum_probs=44.2
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCc--eeEEEEecCceEEEEecchhhHHHHHHHhcccc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTS--VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLD 485 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~--v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~~ 485 (605)
.+|+-+.|..++..+|+..+...|++.. |.+| -...|||.|.+.|.|+.-++.++..+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---tgG~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---TGCSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---CTTCEEEEESSHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---ecCEEEEEECCHHHHHHHHHHhcCCc
Confidence 4889999999999987754444455542 4444 45999999999999999888887743
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=87.52 E-value=1 Score=43.46 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=47.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhC-CCceeEEEEe--cCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV--DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg-~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .|| .+ .+|..+ +...|||.|.+.++|...+..++.
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~-~~G~~i--~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g 211 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFS-SNGGVV--KGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 211 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHH-TTSCCE--EEEEECSSSTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCccCCHHHHHHHHH-HcCCCe--eEEEEEECCCcEEEEEECCHHHHHHHHHHHCC
Confidence 5689999999999999999996 788 54 455554 678999999999999998887765
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=87.51 E-value=1 Score=40.34 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=44.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 480 (605)
..+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..|..
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFG-KYGTV--TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHT-TTCCE--EEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 4589999999999999999996 78975 45665533 4899999999999998774
No 180
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.50 E-value=1.1 Score=38.06 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=42.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCc-----eEEEEecchhhHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DET-----AVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddt-----sa~V~l~~~e~~~~~L~ 479 (605)
...||+-+.|..++..||++.|+ .||.. +|..+ |.+ .|||.|.+.++|+..|.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~-~~G~~---~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFS-PLNPM---RVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSC-SCCCS---EEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HcCce---EEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 45699999999999999999986 68855 33443 544 69999999999999874
No 181
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=87.06 E-value=0.79 Score=37.87 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=42.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSK 476 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~ 476 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|.-+- ...|||.|.+.++|+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~-~~G~i--~~v~i~~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFC-QYGEV--VDVFIPKPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEECCSSCCSEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-ccCCE--EEEEEeeCCCCEEEEEECCHHHHHH
Confidence 45689999999999999999996 79975 4455442 5789999999999985
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=87.04 E-value=1.4 Score=43.50 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=48.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC--ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd--tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+.+ ..|||.|.+.+++...+..++.
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~-~~G~i--~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g 266 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFN-QFPGF--KEVRLVPGRHDIAFVEFDNEVQAGAARDALQG 266 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-hcCCe--EEEEEecCCCcEEEEEeCCHHHHHHHHHHcCC
Confidence 45689999999999999999996 78876 45666654 5899999999999998777665
No 183
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.99 E-value=1.1 Score=39.01 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=43.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCc-eeEEEEe-c-----CceEEEEecchhhHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-VISVYHV-D-----ETAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~-v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~ 479 (605)
...||+-+.|..++..+|++.|+ .||... |.+|..+ | ...|||.|.+.++++..|.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 45589999999999999999996 688722 2334443 3 2379999999999998766
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=86.98 E-value=0.77 Score=42.73 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=47.5
Q ss_pred ceEEEeCCCC-cCcHHHHHHHHHhhhCCCceeEEEEe-c-CceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHV-D-ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~-~~k~~dI~~~~sk~fg~~~v~~v~~i-d-dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..+|+-|.|. .++..+|+++|+ .||.+ .+|..+ | .+.|||.|.+.++|+..+..++..
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~-~~G~i--~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~ 64 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFG-VYGDV--QRVKILFNKKENALVQMADGNQAQLAMSHLNGH 64 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHH-TTCCC--SEEECSTTCSSCCEEECTTTHHHHHHHHHHTTC
T ss_pred cEEEEeCCCcccCCHHHHHHHHH-hcCCE--EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3589999999 999999999996 79985 345554 3 368999999999999998876663
No 185
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.68 E-value=0.88 Score=40.46 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=44.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCc--eeEEEEe-cC-----ceEEEEecchhhHHHHHHH
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTS--VISVYHV-DE-----TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~--v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~~ 480 (605)
..||+-+.|..++..||++.|+ .||++. |.+|..+ |. ..|||.|.+.++++..|..
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 4689999999999999999996 788752 3344554 32 3699999999999887653
No 186
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.64 E-value=1.7 Score=36.59 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=43.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC-----ceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE-----TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~~ 480 (605)
...+|+-+.|..++..||++.|+ .||.+.. .|..+ |+ ..|||.|.+.++++..|..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~-~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFS-GLEIVPN-GMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTT-TCCEEEE-EEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCcce-eEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 45689999999999999999996 6786421 13332 32 3699999999999998765
No 187
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=86.64 E-value=1.7 Score=38.68 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=46.5
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCce------eEEEEe----cCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSV------ISVYHV----DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v------~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+.. ..|... ....|||.|.+.++|...+..++.
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 4589999999999999999996 7998642 123332 235899999999999998887665
No 188
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.54 E-value=1.1 Score=40.09 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=44.0
Q ss_pred cceEEEeCCCCc-CcHHHHHHHHHhhhCCCceeEEEE-ecCceEEEEecc-hhhHHHHHHHh
Q 007386 423 ECIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYH-VDETAVFVQFSR-AEMVSKFLDLK 481 (605)
Q Consensus 423 ~~~v~~~~fp~~-~k~~dI~~~~sk~fg~~~v~~v~~-iddtsa~V~l~~-~e~~~~~L~~~ 481 (605)
..+|++-|.+.. .+..+|++.|+ .||.+ .+|.. .|++.+||-|.+ .+.|.+++..+
T Consensus 18 G~il~v~~l~~~~~sredLke~F~-~~G~V--~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFS-NHGEI--KWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTC-SSCCE--EEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCCHHHHHHHHH-hcCCE--EEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 346788889999 99999999996 68853 33333 288899999999 78888887765
No 189
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=86.35 E-value=1.9 Score=40.97 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=47.3
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+ |. ..|||.|.+.++++..|..++.
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~ 79 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFS-PAGPI--LSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 79 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hhCCE--EEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh
Confidence 4589999999999999999996 79975 566665 32 3799999999999998877665
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=86.10 E-value=2.3 Score=39.09 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=47.1
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~-~~G~v--~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 178 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLT-SFGPL--KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 178 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHH-TBSCE--EEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HcCCc--cEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 45699999999999999999996 78975 45555432 4799999999999998877665
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=86.07 E-value=1.5 Score=39.23 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=43.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~ 479 (605)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|...|.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFS-QWGTI--IDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHH-TTSCC--SEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHH-hCccE--EEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 34589999999999999999997 79976 34555432 389999999999998876
No 192
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=85.89 E-value=1.2 Score=47.96 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=47.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhccc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
..||+-++|..++..+|.++|+ .||.+ ..|..+ | ...|||.|.+.+.|...|..++..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFE-VYGPI--KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HcCCe--eEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 4699999999999999999997 79986 344444 3 357999999999999998877653
No 193
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=85.80 E-value=2.4 Score=39.86 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=43.6
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCc---eEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET---AVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddt---sa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..++..+|++.|+ .||.+. +|.-+++. .|||.|.+.++++.-+..++.
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs-~fG~V~--~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG 106 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFS-KFGTVL--KIITFTKNNQFQALLQYADPVSAQHAKLSLDG 106 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHH-HHSCEE--EEEEEESSSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred EEEEeCcCCCCCHHHHHHHHH-hcCCEE--EEEEEeCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 367778899999999999997 899863 44444442 699999999999987665554
No 194
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=85.27 E-value=1.5 Score=36.53 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=43.5
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEE----EecCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVY----HVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~----~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||.+...-+. --....|||.|.+.++++..|. ++.
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g 79 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAIS-ELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG 79 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHH-HHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCC
Confidence 4589999999999999999997 67764320000 1124579999999999999987 655
No 195
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=85.26 E-value=1.1 Score=36.42 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=43.9
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEE-ecCceEEEEecchhhHHHHHHHhccc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYH-VDETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
.+|+-+.|..++..+|++.|+ .| .+ .++.. -....|||.|.+.++++..+..++..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~-~~-~v--~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLK-DY-DL--KYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTC-SS-CC--CCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred EEEEeCCCCCCCHHHHHHHHh-hC-Ce--EEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 489999999999999999986 45 33 23333 34568999999999999988877653
No 196
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.65 E-value=1.6 Score=37.48 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=43.4
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~~ 480 (605)
...||+-+.|..++..+|++.|+ .||.+. .+|..+ | ...|||.|.+.++|+..|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLE-GIPVDE-NAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTT-TSCCCS-TTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred ccEEEEeCcCCcCCHHHHHHHHH-hCCCcC-CeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 35689999999999999999996 688762 123443 2 35799999999999887654
No 197
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=84.23 E-value=3.3 Score=36.20 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=44.3
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-++ .++..+|+++|+ .||.+.- |... ....|||.|.+.++|+..+..++..
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~-~~G~I~~--v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFS-PFGNIID--LSMDPPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHS-TTCCCSC--EEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEcCC--CCCHHHHHHHHH-ccCCEEE--EEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 345777775 589999999996 8998743 3333 5789999999999999988776653
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=84.09 E-value=2.6 Score=37.80 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=45.1
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhh----CCC-----ceeEEEE-ecCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVY----GPT-----SVISVYH-VDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~f----g~~-----~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .| |.. .|.++.- -+...|||.|.+.++|+..| .++.
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 4589999999999999999997 67 522 3334433 36789999999999999987 4444
No 199
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=83.70 E-value=2.6 Score=46.19 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=54.2
Q ss_pred HHHHHhcCCCeEEech-hhhHHHHHHHHhc--C--CCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHH-hh-------
Q 007386 221 VIDLLSSEKKLIVGHN-CFLDIAHIYSKFF--G--PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ-RM------- 287 (605)
Q Consensus 221 v~~~l~~s~kpiVgHN-~~~Dl~~l~~~F~--~--pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~-~~------- 287 (605)
|.+.|...+.++|||| .-+|+.+|-+.|. | ++|..+. . .-..+||--++...-.+.. .+
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~-------~-~~~~iDtl~l~r~~~~~~~~~~~wP~~~~ 159 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ-------H-DNSRWDLLDVMRACYALRPEGINWPENDD 159 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTG-------G-GCEEEEHHHHHHHHHHHCCTTSCCCBCTT
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccc-------c-CCceeeHHHHHHHHHHhCcccccCccccc
Confidence 3344444678999999 6899999877762 2 2221100 0 0234577666543221100 00
Q ss_pred ccCCCChHHHHHhhhhhcccCCcccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHH
Q 007386 288 KKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 359 (605)
Q Consensus 288 ~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~~ 359 (605)
...+.+|..+...+ ++ ..+..|.|-.||++|+.+|.+|...
T Consensus 160 ~~~s~kL~~L~~~~-----------------------Gi--------~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 160 GLPSFRLEHLTKAN-----------------------GI--------EHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp SSBCCCHHHHHHHT-----------------------TC--------CCC---CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHc-----------------------CC--------CCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11244566553221 01 1134699999999999999998754
No 200
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.34 E-value=3.1 Score=37.11 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=42.3
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCc--eEEEEecchhhHHHHHHHhcc
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET--AVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddt--sa~V~l~~~e~~~~~L~~~~~ 483 (605)
+|+-+.|..++..+|+++|+ .||.+. +|.-++.+ .|||.|.+.++|...+..++.
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs-~yG~V~--~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG 84 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCN-PVGKVQ--RIVIFKRNGIQAMVEFESVLCAQKAKAALNG 84 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHT-TTSCEE--EEEEEESSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEcCcCCCCCHHHHHHHHH-hcCCEE--EEEEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 55677888999999999996 899763 34334443 499999999999887766665
No 201
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=83.22 E-value=1.9 Score=38.91 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=44.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCc-eeEEEEe-cC-----ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-VISVYHV-DE-----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~-v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...||+-+.|..++..||++.|+ .||... |.+|..+ |. ..|||.|.+.++|+..|. ++.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 45699999999999999999996 789721 2233333 32 379999999999998877 443
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=83.10 E-value=2.7 Score=38.55 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=43.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 480 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|...|..
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFE-QYGKI--EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHT-TTSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ceEEEeCCCCCCCHHHHHHHHh-cCCCe--EEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 5689999999999999999996 78976 34444422 2599999999999987754
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=82.84 E-value=2.6 Score=40.33 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=47.2
Q ss_pred ceEEEeCCC-CcCcHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFP-SHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp-~~~k~~dI~~~~sk~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.++|+-+.| ..++..+|+++|+ .||.+ .+|.-+- ...|||.|.+.++|+..+..++.
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~-~~G~v--~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng 64 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFC-LYGNV--EKVKFMKSKPGAAMVEMADGYAVDRAITHLNN 64 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHT-TTSCE--EEEEECTTSTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCcccCCHHHHHHHHH-hcCCe--EEEEEecCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 458899999 7999999999996 79975 4555554 47899999999999998887765
No 204
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=82.24 E-value=1.6 Score=38.46 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=45.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
+.+|+-+.|..++..+|++.|+ .||.+....|..+ |. ..|||.|.+. ++...+..++.
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 4589999999999999999996 8998743113443 33 4799999999 88887777665
No 205
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.80 E-value=3.3 Score=35.76 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=41.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFL 478 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L 478 (605)
...||+-|.|..++..||++.|+ .|+ |.+|..+ | ...|||.|.+.++++..|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~-~~~---v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFH-GLR---VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTT-TSC---CCEEEECCCTTCCCCSEEEEECSSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhc-cCC---eeEEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 45699999999999999999986 453 3455554 3 247999999999999887
No 206
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=81.00 E-value=3.6 Score=39.03 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=45.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c----CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|+++|+ .||.+. ++.-+ | ...|||.|.+.++|+..+..++.
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~-~~G~i~--~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFS-AFGNIL--SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHG-GGSCEE--EEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccceECCcccccHHHHHHHHHh-hcCCeE--EEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 3489999999999999999996 799763 34333 3 23699999999999998776654
No 207
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=80.36 E-value=4.6 Score=36.42 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=43.2
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCc---eEEEEecchhhHHHHHHHhcc
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET---AVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddt---sa~V~l~~~e~~~~~L~~~~~ 483 (605)
+++-+.+..++..+|+++|+ .||.+ .+|.-+++. .|||.|.+.++|+.-+..++-
T Consensus 31 I~V~NL~~~vte~~L~~lFs-~yG~V--~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 31 IIVENLFYPVTLDVLHQIFS-KFGTV--LKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp EEEESCCSCCCHHHHHHHHT-TSSCE--EEEEEEEETTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCHHHHHHHHh-CcCCE--EEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 67777888899999999996 89986 345444443 499999999999987766665
No 208
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=80.31 E-value=4.4 Score=39.80 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=46.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .++..+ |. ..|||.|.+.+.+...+..++.
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVR-PFGSL--ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEcCCCCcCCHHHHHHHHH-hcCCe--eEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999996 79985 455554 32 2699999999999998877665
No 209
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=80.00 E-value=5.2 Score=39.26 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=45.7
Q ss_pred cceEEEeCCCCcCcHHHHH----HHHHhhhCCCceeEEEEec----CceEEEEecchhhHHHHHHHhccc
Q 007386 423 ECIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHVD----ETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~----~~~sk~fg~~~v~~v~~id----dtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
...+|+-+.|..++..+|+ +.|+ .||.+ .+|..+. ...|||.|.+.+.++..+..++..
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i--~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFS-QFGQI--LDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCe--EEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 4569999999999999977 6664 67765 3454432 358999999999999998777663
No 210
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=79.86 E-value=2.4 Score=42.00 Aligned_cols=57 Identities=12% Similarity=0.210 Sum_probs=45.5
Q ss_pred cceEEEeCCCCc-CcHHHHHHHHHhhhCCCceeEEEEecCc--------eEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYHVDET--------AVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~-~k~~dI~~~~sk~fg~~~v~~v~~iddt--------sa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+.+.|.. ++..+|++.|+ .||.+ .+|..+-+. .|||.|.+.++|...| .++.
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g 275 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFE-GFGSI--EKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR 275 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHG-GGSCE--EEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT
T ss_pred CceEEEECCCcccCCHHHHHHHHh-ccCCe--eEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC
Confidence 456899999999 99999999997 79975 455555443 4999999999999876 5554
No 211
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=78.99 E-value=3.5 Score=40.76 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=44.8
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~ 479 (605)
...||+-+.|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.++|+..|.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFK-HCGPI--IHVDVADSLKKNFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSSSEEEEEEESSHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCcEEEEEEECCHHHHHHHHH
Confidence 45699999999999999999996 79975 4455543 4789999999999999884
No 212
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=78.47 E-value=4.1 Score=34.52 Aligned_cols=57 Identities=11% Similarity=0.192 Sum_probs=46.7
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhccc
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
+|+-+.+..++-.+|+.+|+ .||++.-+.+. .+...|||.+.+.+.|....+.++..
T Consensus 10 L~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~ 66 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNC 66 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHH-HHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTE
T ss_pred EEEeCCCccCCHHHHHHHHH-hhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCC
Confidence 56777899999999999997 89997543332 38999999999999999987777663
No 213
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=77.84 E-value=4.7 Score=39.51 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=46.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|...|..++.
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFS-QFGPV--EKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCCHHHHHHHHH-hcCCe--EEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 3589999999999999999996 79975 344443 4 24699999999999999888743
No 214
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=77.04 E-value=6.1 Score=36.18 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=44.0
Q ss_pred eEEEeCCCCcCcHHHHHHHHHhhh----CCC-----ceeEEEE-ecCceEEEEecchhhHHHHHHHhcc
Q 007386 425 IVIVWGFPSHLKAWDIRECISKVY----GPT-----SVISVYH-VDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 425 ~v~~~~fp~~~k~~dI~~~~sk~f----g~~-----~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|+-+.|..++..+|++.|+ .| |.. .|.++.. -+...|||.|.+.++|+..| .++.
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 489999999999999999997 67 521 2333333 36789999999999999987 4443
No 215
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=77.04 E-value=4.9 Score=39.47 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=46.1
Q ss_pred cceEEEeCCCCcC-cHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHL-KAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~-k~~dI~~~~sk~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..+ +..+|++.|+ .||.+. +|..+ | ...|||.|.+.++|...+..++.
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALS-AVHSPT--FCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTC-SSSCCS--EEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred ccEEEEecCCcccCCHHHHHHHhh-CCCCeE--EEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 4568999999997 7899999996 789763 44443 3 35799999999999998777665
No 216
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=76.72 E-value=5.4 Score=35.53 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=42.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCcee--EEEEe-c-----CceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVI--SVYHV-D-----ETAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~--~v~~i-d-----dtsa~V~l~~~e~~~~~L~~ 480 (605)
...||+-+.|..++..+|++.|+ .|+ |+ +|..+ | ...|||.|.+.++|+..|..
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~-~~~---i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFS-GLE---IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTT-TSC---EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-cCC---ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 45699999999999999998886 453 34 55555 2 35799999999999987764
No 217
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=76.63 E-value=7.3 Score=35.00 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=44.2
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|+ .||.+ ..++. ..|||.|.+.++|...|..++.
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~-~~g~v-----~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFE-DALEI-----RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCT-TCSEE-----EEECSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCeE-----EEecCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999986 57743 33332 5799999999999998887665
No 218
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=75.35 E-value=4 Score=40.58 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=46.3
Q ss_pred ceEEEeCCCCcC---------cHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHL---------KAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~---------k~~dI~~~~sk~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..+ +..+|+..|+ .||.+. +|.-+ +...|||.|.+.+.|+..+.+++.
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~--~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDID--RIRYVESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEE--EEEEEGGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEE--EEEEECCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 348888999887 6899999996 799863 44443 789999999999999998777765
No 219
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=74.91 E-value=0.75 Score=39.51 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=44.3
Q ss_pred ceEEEeCCCCcCcHHHHHHHHHhhhCCCceeE------EEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 007386 424 CIVIVWGFPSHLKAWDIRECISKVYGPTSVIS------VYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 424 ~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~------v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|+-+.|..++..+|++.|+ .||.+.... |..+ | ...|||.|.+.++|+..+..++.
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 4588999999999999999996 788764200 3333 3 23799999999999887765554
No 220
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.20 E-value=4.8 Score=34.40 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=30.2
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCeEEEEeccCCCCceeEEEEEc
Q 007386 144 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 188 (605)
Q Consensus 144 l~L~~~~s~qrrLV~q~lr~~fp~lv~v~~~~~~~~~~~~vv~~~ 188 (605)
+.|++.++++|++||.+++. +++.+.+. ++....+.+||+..
T Consensus 32 v~L~PM~~~eRriIH~~l~~--~gl~S~S~-Geep~~R~VvI~~~ 73 (94)
T 2cpm_A 32 KKFQPMNKIERSILHDVVEV--AGLTSFSF-GEDDDCRYVMIFKK 73 (94)
T ss_dssp EECCCCCSSHHHHHHHHHHH--HTCEEEEE-CSSSSCCEEEEECS
T ss_pred eEeCCCCHHHHHHHHHHHHH--CCCEEEEe-cCCCCceEEEEEeC
Confidence 56788899999999999987 77877664 43332256666643
No 221
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=69.57 E-value=3.7 Score=37.16 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=41.6
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCceeEEEEe-cC-----ceEEEEecchhhHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE-----TAVFVQFSRAEMVSKFL 478 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i-dd-----tsa~V~l~~~e~~~~~L 478 (605)
...||+-+.|..++..||++.|+ .||.. +|..+ |. ..|||.|.+.++++..|
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~-~~Gi~---~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFS-PLNPV---RVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHC-SCCCS---EEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe---EEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 34589999999999999999996 68843 44443 32 37999999999999876
No 222
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=68.92 E-value=18 Score=32.29 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=43.0
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhhCCCc---eeEE-EEecCceEEEEecchhhHHHHHHHhcc
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVYGPTS---VISV-YHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~fg~~~---v~~v-~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...+|+-+.|..++..+|++.|++ ||... +... .......|||.|.+.++|+..|. ++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g 75 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISE-LFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG 75 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHH-HHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCC
Confidence 356899999999999999998864 44321 1111 12345799999999999999984 544
No 223
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.86 E-value=8 Score=33.19 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 438 WDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 438 ~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.+|.+.|+ .||. |+.|+.+.|+ +||.|.+.+.|...+. ++.
T Consensus 39 ~~L~~~F~-~~G~--Vilvr~v~d~-~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 39 TELMQTLG-SYGT--IVLVRINQGQ-MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp HHHHHHHH-HHSC--CSEEEEETTE-EEEECSCSHHHHHHHH-GGG
T ss_pred HHHHHHHH-HCCC--EEEEEEecCc-EEEEEcChHHHHHHHh-cCC
Confidence 34777886 6884 4577888777 9999999999988876 554
No 224
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.71 E-value=10 Score=32.17 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=35.7
Q ss_pred CcCcHHHHHHHHHhhhCCCceeEEEEe--cCceEEEEecchhhHHHHHHHh
Q 007386 433 SHLKAWDIRECISKVYGPTSVISVYHV--DETAVFVQFSRAEMVSKFLDLK 481 (605)
Q Consensus 433 ~~~k~~dI~~~~sk~fg~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~~ 481 (605)
..++..+|+++|+ .||.+ .+|..+ ....|||.|.+.++|+..+...
T Consensus 27 ~~~te~~L~~~F~-~~G~V--~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~ 74 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEV--LNLVLSSKKPGTAVVEFATVKAAELAVQNE 74 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCE--EEEEEESSSSSEEEEEESCHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHH-hcCCE--EEEEEccCCCCEEEEEECCHHHHHHHHHhc
Confidence 3468899999996 79975 445544 4568999999999999887663
No 225
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=62.63 E-value=15 Score=31.08 Aligned_cols=58 Identities=9% Similarity=0.079 Sum_probs=47.9
Q ss_pred EEEeCCCCcCcHHHHHHHHHhhhCC--CceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 007386 426 VIVWGFPSHLKAWDIRECISKVYGP--TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 426 v~~~~fp~~~k~~dI~~~~sk~fg~--~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
+....+|+..+-.++.+.+...|+. ...+.+.|+||.--+|.+++.+..+..|.+.+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~ 76 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYEL 76 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHc
Confidence 5566678899999999988888875 355689999999999999999998887776554
No 226
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=58.77 E-value=5.3 Score=37.97 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=26.8
Q ss_pred hhhhccHHHHHHHHhc--------CCCeEEechhhhHHHHHHHHh
Q 007386 212 IKASIGFRHVIDLLSS--------EKKLIVGHNCFLDIAHIYSKF 248 (605)
Q Consensus 212 l~~~iGfr~v~~~l~~--------s~kpiVgHN~~~Dl~~l~~~F 248 (605)
+.++..|..+++.+.+ .+.|+||||.-+|+.||-+.|
T Consensus 79 l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~ 123 (186)
T 3tr8_A 79 KNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYM 123 (186)
T ss_dssp HTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHH
Confidence 4455666666655432 466999999999999998764
No 227
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=58.02 E-value=9.8 Score=39.77 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=44.0
Q ss_pred eEEE--eCCCCcCcHHHHHHHHHhhhCCCceeEEEEe--cCceEEEEecchhhHHHHHHHhccc
Q 007386 425 IVIV--WGFPSHLKAWDIRECISKVYGPTSVISVYHV--DETAVFVQFSRAEMVSKFLDLKGSL 484 (605)
Q Consensus 425 ~v~~--~~fp~~~k~~dI~~~~sk~fg~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~~~~~ 484 (605)
.+|+ .|.+..++..+|++.|+ .||.+. +| +| +..-|||.|.+.++|+..++.++.-
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~-~~G~V~--~v-~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLE-KCGLVD--AL-LMPPNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHH-TTSCEE--EE-ECCTTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred EEEEEcCCCCCCCCHHHHHHHHH-hcCCeE--EE-EEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3555 34677899999999997 799753 33 34 7789999999999999988887763
No 228
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.29 E-value=44 Score=28.08 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhCCCceeEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 007386 437 AWDIRECISKVYGPTSVISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 437 ~~dI~~~~sk~fg~~~v~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..+|++.|+ .||.+. +|.-.| ...|||.|.+.++|+..+..++.
T Consensus 40 e~~l~~~f~-~~G~v~--~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 40 REDLRVECS-KFGQIR--KLLLFDRHPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp HHHHHHHGG-GTSCCS--EEEEETTCTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred HHHHHHHHH-ccCCEe--EEEEecCCCCEEEEEEECCHHHHHHHHHHcCC
Confidence 358888886 789764 442234 36899999999999998776664
No 229
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=51.11 E-value=23 Score=39.45 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=61.0
Q ss_pred HHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC-CcchhHHhhhchhHHHhhccCCCChHHHHH
Q 007386 221 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH-IIDTKILLNSNSILQQRMKKSSTSLSKAFS 299 (605)
Q Consensus 221 v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~-IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~ 299 (605)
+.+.|....+++||||.=+|+..|.+ +|- -++. ++||..++....+- ....+|..+..
T Consensus 82 L~~~L~d~~i~kV~hnak~D~~~L~~--~Gi--------------~l~~~~~DT~laayLL~p~-----~~~~~L~~La~ 140 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNLKYDRGILAN--YGI--------------ELRGIAFDTMLESYILNSV-----AGRHDMDSLAE 140 (605)
T ss_dssp HHHHHTCTTSCEEESSHHHHHHHHHT--TTC--------------CCCCEEEEHHHHHHHHCTT-----SSCCSHHHHHH
T ss_pred HHHHHcCCCCeEEEECcHHHHHHHHH--CCC--------------CCCCccccHHHHHHHhCCC-----CCCCCHHHHHH
Confidence 44556677889999999999998875 221 1233 78999887532210 12466777754
Q ss_pred hhhhhcccCCcccccccCCCceeeeeec-cccccCCC----CCcccchhhhHHHHHHHHHHHHHHhC
Q 007386 300 VLCPQIALGSKSTHLALQPSVKVEVEVD-DIRSSNWN----SGVKHEAGYDAFMTGCVFAQACSHLG 361 (605)
Q Consensus 300 ~l~~~l~~~~~~~~~~~~p~v~i~v~~~-~~~~~~~~----~~~~HEAGyDA~mTG~vF~kL~~~lg 361 (605)
.+... +.+..+--.. +.....+. ....|-|+.||..|..+|.+|...|.
T Consensus 141 ~~Lg~-------------~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 141 RWLKH-------------KTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHSCC-------------CCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCC-------------CcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43110 0000000000 00000000 12347799999999999999988774
No 230
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.72 E-value=73 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=44.7
Q ss_pred cceEEEeCCCCcCcHHHHHHHHHhhh--CCCceeEEEEecCceEEEEecchhhHHHHHHH
Q 007386 423 ECIVIVWGFPSHLKAWDIRECISKVY--GPTSVISVYHVDETAVFVQFSRAEMVSKFLDL 480 (605)
Q Consensus 423 ~~~v~~~~fp~~~k~~dI~~~~sk~f--g~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~ 480 (605)
...|.+.|.|+......|.-.|.+.- |..-|.+|..+. .+|+|.|.+.+.++.+|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-CcEEEEEcChHHHHHHhcC
Confidence 34588999999988777777787642 444566777766 9999999999999999765
No 231
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=46.51 E-value=47 Score=34.51 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=63.5
Q ss_pred HHHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHH
Q 007386 220 HVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 299 (605)
Q Consensus 220 ~v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~ 299 (605)
.+.+.|.+...+.||||+-.|+..|.+.| |-.| ..+|||...+...++ ....+|+.+.+
T Consensus 65 ~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~-Gi~~--------------~~~fDt~lAa~lL~~------~~~~~L~~L~~ 123 (375)
T 1yt3_A 65 PLKAILRDPSITKFLHAGSEDLEVFLNVF-GELP--------------QPLIDTQILAAFCGR------PMSWGFASMVE 123 (375)
T ss_dssp HHHHHHHCTTSEEEESSCHHHHHHHHHHH-SSCC--------------SSEEEHHHHHHHTTC------CTTCCHHHHHH
T ss_pred HHHHHHcCCCceEEEeeHHHHHHHHHHHc-CCCC--------------CcEEEcHHHHHHcCC------CCChhHHHHHH
Confidence 44566777788999999999999988655 2111 247899887654321 12567888765
Q ss_pred hhhh-hcccCCcccccccCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHhC
Q 007386 300 VLCP-QIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHLG 361 (605)
Q Consensus 300 ~l~~-~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~-----~~~~HEAGyDA~mTG~vF~kL~~~lg 361 (605)
.+.. .+. +. ...+.+. ....+-|+.||+.+-.++-.|...|.
T Consensus 124 ~~l~~~l~----K~----------------~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 124 EYSGVTLD----KS----------------ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp HHHCCCCC----CT----------------TTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHcCCCCC----CC----------------cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 110 10 0000111 13456699999999999999988873
No 232
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=46.31 E-value=69 Score=34.30 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=63.1
Q ss_pred HHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHHhh
Q 007386 222 IDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 301 (605)
Q Consensus 222 ~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~l 301 (605)
.+.|.+...+-||||+-.|+-.|++.|.- .| ..++||..++.... ....+|..+.+.+
T Consensus 175 ~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi-~~--------------~~~fDT~lAa~lL~-------~~~~gL~~Lv~~~ 232 (428)
T 3saf_A 175 NESLTDPAIVKVFHGADSDIEWLQKDFGL-YV--------------VNMFDTHQAARLLN-------LGRHSLDHLLKLY 232 (428)
T ss_dssp HHHHTCTTSEEEESSCHHHHHHHHHHHCC-CC--------------SSEEEHHHHHHHTT-------CSCCSHHHHHHHH
T ss_pred HHHHcCCCceEEEeehHHHHHHHHHHcCC-Cc--------------CceeechhHHHHhC-------CCCCCHHHHHHHH
Confidence 45677778889999999999888766621 12 24789988765332 2246888876554
Q ss_pred hhhcccCCcccccccCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHhC
Q 007386 302 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHLG 361 (605)
Q Consensus 302 ~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~-----~~~~HEAGyDA~mTG~vF~kL~~~lg 361 (605)
... ...+. .....+. ....+-|+-||+.+-.++-.|...|.
T Consensus 233 Lg~---~l~K~----------------~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 233 CNV---DSNKQ----------------YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp HCC---CCCCT----------------TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCC---CCCcc----------------ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 00010 0001111 23457899999999999999988873
No 233
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=46.19 E-value=44 Score=35.44 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=63.1
Q ss_pred HHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHHHh
Q 007386 221 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 300 (605)
Q Consensus 221 v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~~~ 300 (605)
+.+.|.+..++.||||+-.|+..|++.|.- .| ..++||...+... +....+|+.+.+.
T Consensus 151 L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi-~~--------------~~~fDt~lAa~LL-------~~~~~~L~~L~~~ 208 (410)
T 2hbj_A 151 LNEVFTNPSIVKVFHGAFMDIIWLQRDLGL-YV--------------VGLFDTYHASKAI-------GLPRHSLAYLLEN 208 (410)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCC-CC--------------SSEEEHHHHHHHH-------TCSCCSHHHHHHH
T ss_pred HHHHHcCCCceEEEEehHHHHHHHHHHcCC-Cc--------------CCEEEcHHHHHHh-------CCCccCHHHHHHH
Confidence 346677778889999999999999876621 11 2388998776432 1224678887654
Q ss_pred hhhhcccCCcccccccCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHhC
Q 007386 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHLG 361 (605)
Q Consensus 301 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~-----~~~~HEAGyDA~mTG~vF~kL~~~lg 361 (605)
+.... ..+. ...+.+. ....+-|+.||+.+-.++-.|...|.
T Consensus 209 ~lg~~---l~K~----------------~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 209 FANFK---TSKK----------------YQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp HSCCC---CCCT----------------TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HcCCC---CCcc----------------ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32110 0110 0001111 13456799999999999999988873
No 234
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.18 E-value=33 Score=29.08 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHH
Q 007386 438 WDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLD 479 (605)
Q Consensus 438 ~dI~~~~sk~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~ 479 (605)
.+|.+.|+ .||. |+.|+.+-|. +||.|.+.+.+...+.
T Consensus 30 ~~L~~~F~-~~G~--Vi~vr~~~d~-~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 30 DELLQQFA-SFGE--VILIRFVEDK-MWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHH-TTCC--EEEEEECSSS-EEEEESSHHHHHHGGG
T ss_pred HHHHHHHH-hCCC--eEEEEEecCC-EEEEECChHHHHHHHh
Confidence 44666665 5773 5677777776 8999999998877654
No 235
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=43.29 E-value=51 Score=30.01 Aligned_cols=43 Identities=14% Similarity=0.454 Sum_probs=33.0
Q ss_pred EEEeCC----CCcCcHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecc
Q 007386 426 VIVWGF----PSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSR 470 (605)
Q Consensus 426 v~~~~f----p~~~k~~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~ 470 (605)
+|++++ |..++-.+|++.|+ .||.+.-+.+.. |. .=+||.+.+
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~-Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFN-DPNSALPLHVYLIKYAS 57 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEE-CTTTCCEEEEEEEECC-
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEe-cCCCCceeeEEEEEECC
Confidence 789999 99999999999997 899875333332 43 348999995
No 236
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=41.27 E-value=32 Score=30.74 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=28.8
Q ss_pred cchHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHHHHH
Q 007386 93 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVV 161 (605)
Q Consensus 93 ~D~~F~e~v~~~I~eWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~L~~~~s~qrrLV~q~l 161 (605)
.|..|+-++-..|.+++... . .+.+.+++.|+|||.|+|++-
T Consensus 28 rdR~~il~lE~~i~~Fi~d~----~-----------------------~~~~ef~pmnSy~RllvHrvA 69 (124)
T 1whr_A 28 RDRMMLLKLEQEILEFINDN----N-----------------------NQFKKFPQMTSYHRMLLHRVA 69 (124)
T ss_dssp TTHHHHHHHHHHHHHHHHCS----S-----------------------CCEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC----C-----------------------ccceECCCCCHHHHHHHHHHH
Confidence 34566777777777777521 1 123567788999999999984
No 237
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=38.14 E-value=43 Score=28.27 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhCCCceeEEEEec---------CceEEEEecchhhHHHHHHHhcc
Q 007386 437 AWDIRECISKVYGPTSVISVYHVD---------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 437 ~~dI~~~~sk~fg~~~v~~v~~id---------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..||++.|+ .||.+ .+|.-.. ...+||.|.+.++|+..+..++.
T Consensus 29 ~~dl~~~f~-k~G~V--~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 29 VEDVRDECS-KYGLV--KSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp HHHHHHHHH-TTSCE--EEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-ccCCE--EEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357887876 78875 4444332 25799999999999987776665
No 238
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=36.38 E-value=62 Score=27.14 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 007386 438 WDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 438 ~dI~~~~sk~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
.||+..|...||.+ .+|.-+.+ ..+||.|.+.++|+..+..++.
T Consensus 41 edl~~~f~~~~G~V--~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 41 EEVFTEMEEKYGEV--EEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp HHHHHHHHHHTCCE--EEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHhhccCCce--EEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCC
Confidence 34444552378975 45554433 5899999999999987766654
No 239
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=35.70 E-value=62 Score=27.27 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhhhCCCceeEEEEe-c-------CceEEEEecchhhHHHHHHHhcc
Q 007386 436 KAWDIRECISKVYGPTSVISVYHV-D-------ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 436 k~~dI~~~~sk~fg~~~v~~v~~i-d-------dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
...||++.|+ .||.+ .+|.-+ | ...+||.|.+.++|...+..++.
T Consensus 26 ~~~dl~~~f~-~~G~V--~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 26 LEVETKEECE-KYGKV--GKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CHHHHHHHGG-GGSCE--EEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCE--EEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 4688998886 79975 344433 2 24799999999999887666655
No 240
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=30.50 E-value=55 Score=32.17 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=30.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHhCCCeEEEEeccCCCCceeEEEEEc
Q 007386 143 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 188 (605)
Q Consensus 143 ~l~L~~~~s~qrrLV~q~lr~~fp~lv~v~~~~~~~~~~~~vv~~~ 188 (605)
...|++.+++.||+||..|. .+|++.+.+. ++ +..+.+||+-.
T Consensus 167 ~v~L~PM~~~ERriIH~al~-~~~~V~T~Se-Ge-ep~R~VVI~~~ 209 (225)
T 3gku_A 167 SVSLEPMNPYERRIIHAALQ-NDKYVVTRSD-GE-EPFRHVIISLK 209 (225)
T ss_dssp CEECCCCCHHHHHHHHHHTT-TCSSEEEEEE-SS-TTSCEEEEEEC
T ss_pred EEEccCCCHHHHHHHHHHHc-cCCCcEEEEe-ec-CCCeEEEEEEc
Confidence 35688999999999999996 4677776654 33 33555555543
No 241
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=29.13 E-value=74 Score=27.57 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhCCCceeEEEEe-cC----------ceEEEEecchhhHHHHHHHhcc
Q 007386 437 AWDIRECISKVYGPTSVISVYHV-DE----------TAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 437 ~~dI~~~~sk~fg~~~v~~v~~i-dd----------tsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..||++.|+ .||.+. +|.-+ |. ..+||.|.+.+.|+..+..++.
T Consensus 39 eedl~eef~-k~G~V~--~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 39 EGEVTEECG-KFGAVN--RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp HHHHHHHHT-TTSCEE--EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-ccCCEe--EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 467887776 688753 33332 21 3599999999999887666654
No 242
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=28.27 E-value=1.2e+02 Score=28.35 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=58.1
Q ss_pred HHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcc-hhHHhhhchhHHHhhccCCCChHHHHHh
Q 007386 222 IDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID-TKILLNSNSILQQRMKKSSTSLSKAFSV 300 (605)
Q Consensus 222 ~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyD-TK~L~~~~~~l~~~~~~~~tsL~~l~~~ 300 (605)
.+.|.+...+.||||+=.|+..|.+.|.-. ...++| |...+....+ ....+|+.+...
T Consensus 89 ~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~---------------~~~~fDlt~lAayll~~------~~~~~L~~L~~~ 147 (208)
T 2e6m_A 89 KMLLENKSIKKAGVGIEGDQWKLLRDFDVK---------------LESFVELTDVANEKLKC------AETWSLNGLVKH 147 (208)
T ss_dssp HHHHTCTTSEEEESSHHHHHHHHHHHHCCC---------------CCSEEEHHHHHHHHTTC------CCCCCHHHHHHH
T ss_pred HHHhcCCCceEEEEeeHHHHHHHHHHCCCC---------------CCCEEEHHHHHHHHccC------CCChhHHHHHHH
Confidence 355666778899999999999888765211 124789 6554322111 135678877554
Q ss_pred hhhhcccCCcccccccCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHh
Q 007386 301 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHL 360 (605)
Q Consensus 301 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~~~~~~-----~~~~HEAGyDA~mTG~vF~kL~~~l 360 (605)
+.... ..++ . . ...+.|. ....+-|+.||+.+-.++-.|...+
T Consensus 148 ~l~~~---~~K~------k-------~-~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 148 VLGKQ---LLKD------K-------S-IRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp HHSCB---CCCC------H-------H-HHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HcCCC---cCCC------C-------C-eeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 31110 0000 0 0 0011111 1245669999999999999987766
No 243
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=28.13 E-value=55 Score=31.39 Aligned_cols=106 Identities=9% Similarity=-0.016 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCCcchhHHhhhchhHHHhhccCCCChHHHH
Q 007386 219 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAF 298 (605)
Q Consensus 219 r~v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~pLP~~~~EFk~~l~~~FP~IyDTK~L~~~~~~l~~~~~~~~tsL~~l~ 298 (605)
+.+.+.|...+..-|||.+-.|+-.|.+.| |-.| ..++||..++...-+ .-.....+|+.+.
T Consensus 98 ~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~-g~~~--------------~~~~Dl~~la~~~lg---~~~~~~~gL~~Lv 159 (206)
T 1vk0_A 98 KDLYRFFASKFVTFVGVQIEEDLDLLRENH-GLVI--------------RNAINVGKLAAEARG---TLVLEFLGTRELA 159 (206)
T ss_dssp HHHHHHHTCSSSEEEESSCHHHHHHHHHHH-CCCC--------------SSEEEHHHHHHHHHT---CGGGGGCCHHHHH
T ss_pred HHHHHHhcCCCceEEEeccHHHHHHHHHhc-CCCc--------------CCeeeHHHHHHHHcC---CCCCCCccHHHHH
Confidence 335577888888899999999999997766 3222 258899877643111 0001256788876
Q ss_pred HhhhhhcccCC--cccccccCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHH
Q 007386 299 SVLCPQIALGS--KSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 358 (605)
Q Consensus 299 ~~l~~~l~~~~--~~~~~~~~p~v~i~v~~~~~~~~~~~~~~~HEAGyDA~mTG~vF~kL~~ 358 (605)
+.+...--... ..+++.. | -...+.+-|.-|||..-.+|-+|..
T Consensus 160 ~~~lg~~lK~k~~~~SdW~~-p---------------Ls~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 160 HRVLWSDLGQLDSIEAKWEK-A---------------GPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHCCCCHHHHHHHHTGGG-S---------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcCCCCCcccCCCCC-c---------------CCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 65432100000 0011111 1 1234678899999999999998864
No 244
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=27.91 E-value=74 Score=27.43 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhCCCceeEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 007386 437 AWDIRECISKVYGPTSVISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 483 (605)
Q Consensus 437 ~~dI~~~~sk~fg~~~v~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 483 (605)
..||++.|+ .||.+. +|.-.. ...+||.|.+.++|+..+..++.
T Consensus 31 ~edl~~~f~-kfG~V~--~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 31 KDDVIEECN-KHGGVI--HIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp HHHHHHHHT-TTTCCS--EEEECTTCTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-ccCCEE--EEEEecCCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 346676775 688763 443332 26899999999999887666654
Done!