RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007387
(605 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 430 bits (1108), Expect = e-144
Identities = 129/601 (21%), Positives = 223/601 (37%), Gaps = 91/601 (15%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
L K +G I A+ GL +G EGP VHI IA + G +
Sbjct: 99 ALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGV--------FKELCT 150
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
+ R + + G+ ++F AP+GGVL+S+E +A+++ W+ S +V
Sbjct: 151 DRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYEL 210
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVR-YHVMDIIPVTLIGIIGGILGGLYNHILHKV 179
+ T + F+ +N + ++G + G+LG L+ + +
Sbjct: 211 L-----------YTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSI 259
Query: 180 LRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239
L + ++ L V++F S QY
Sbjct: 260 YELR--MRHYPGTNRYFLVGVVALFASALQYPFRLF------------------------ 293
Query: 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAV 299
P NDL + D F + +++ I+ IL ++ G+ +
Sbjct: 294 -ALDPRATINDLFKAVPLYQTD------------HFGWTELILMPIIKFILVALSIGLPL 340
Query: 300 PSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFL 357
P+G+F+P L+G+ +GRL G M I G YAV+GAA+ AG R +S VI
Sbjct: 341 PAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSCAVIIF 399
Query: 358 ELTNNL-LLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGEL 416
E+T + L+P+ +I +L+A VG++FN S+YE ++ +K LP++ +T E+
Sbjct: 400 EVTGQIRHLVPV-LISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREI 458
Query: 417 IDAKPPVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAH 475
+ L + I +L FPV+D L G I R
Sbjct: 459 MHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-----------NGYLLGAISRKE 507
Query: 476 LVLALKKKWFLQEKRRTEE---------WEVREKFSWVELAEREGKIEEVAVTSEEMEMY 526
+V L+ + V+ + T+ +E
Sbjct: 508 IVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT 567
Query: 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586
L + +P V V + LF + + V + +VGI+ R+D+
Sbjct: 568 SSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTER------GKLVGIVEREDVAY 621
Query: 587 F 587
Sbjct: 622 G 622
Score = 29.3 bits (66), Expect = 4.2
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 148 VRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRL-YNLINQKGKMHKLLLALSVSVF 204
+ Y + + +TL+G+ + + +H + L + G+ +L + V
Sbjct: 4 LMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVA 61
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 162 bits (413), Expect = 3e-44
Identities = 79/394 (20%), Positives = 150/394 (38%), Gaps = 76/394 (19%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
L VK G +G + G+ LG+EGP V IG I ++ R D R
Sbjct: 127 VLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFR-LKGDEAR 174
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVV--VVLRAFIE 123
L+ G+++G+ AAF AP+ G+LF +EE+ +R L+ V++ ++ R F
Sbjct: 175 HTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN- 233
Query: 124 ICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLY 183
+ + DV + + + ++GII GI G ++N + + L
Sbjct: 234 ------------HEVALIDVGKLSD-APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLL 280
Query: 184 NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNC 243
+ ++ +L+ ++ + + P
Sbjct: 281 HRVHGGNITKWVLMGGAIGGLCGLLGFVAP------------------------------ 310
Query: 244 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
+ + + N ++ F+ I L+ F P G+
Sbjct: 311 ----------ATSGGGFNLIPIATAGNFSMGM----LVFIFVARVITTLLCFSSGAPGGI 356
Query: 304 FLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
F P++ +G+ G GM +++ G +A+ G +L+A S+R ++ ++ LE+T
Sbjct: 357 FAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMT 416
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILE 393
+N L+ +I L A + +Y IL
Sbjct: 417 DNYQLILPMIITGLGATLLAQFTGGKPLYSAILA 450
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 154 bits (392), Expect = 3e-41
Identities = 77/407 (18%), Positives = 150/407 (36%), Gaps = 80/407 (19%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
L +K++G ++ AG+ G EGP + +G I + G W + ++
Sbjct: 123 VLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGG-----------WFKA--TQENQ 169
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVV--VVLRAFIE 123
R LI G+ +G+ AF AP+ GV EE+ +RS L V+ ++LR
Sbjct: 170 RILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMIR- 228
Query: 124 ICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLY 183
G + ++ + + ++GI+ G++G +N L KVL +
Sbjct: 229 ------------GQSAIISLTEFKR-VPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWF 275
Query: 184 NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNC 243
+ + K L S+ S+
Sbjct: 276 DRLPPLATKWKGFLLGSIIGILSLF----------------PLP---------------- 303
Query: 244 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
L D+AV F+S + +++ F +L LI +G G+
Sbjct: 304 -----------LTDGGDNAVLWAFNSQSHFST----LILVFCGRFLLTLICYGSGAIGGI 348
Query: 304 FLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
F P++ + S + + + A+ G +L+A ++R ++ ++ +E+T
Sbjct: 349 FAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMT 408
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILELKGLPFLDAHPEP 406
+N ++ ++ L+A V ++ IY ++LE P
Sbjct: 409 DNYFVILPLLVTCLVASVVAEALGGKPIYTVLLERTLAKQNRGSLVP 455
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 103 bits (259), Expect = 8e-26
Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 33/184 (17%)
Query: 405 EPWMRTLTVGEL----IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL 460
E + ++ + + V + ++ TT++GFPV+
Sbjct: 5 EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ---- 60
Query: 461 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTS 520
L G +LR L+++++ R+K V E
Sbjct: 61 -----RLVGFVLRRDLIISIENA--------------RKKQDGVVSTSIIYFTEHSPPLP 101
Query: 521 EEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 580
+ L + + +P+TV + + + +FR++GLR LV ++GI+T
Sbjct: 102 PYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN------GRLLGIIT 155
Query: 581 RQDL 584
++D+
Sbjct: 156 KKDV 159
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 54.6 bits (131), Expect = 6e-09
Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 46/188 (24%)
Query: 398 PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457
P + + V + + TL+ + ++V V+ +T +P+++
Sbjct: 1 PRILGRNIG-SHHVRVEHFM--NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ- 56
Query: 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVA 517
L G++ RA LV AL+ + + + +
Sbjct: 57 --------ILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCP------------- 95
Query: 518 VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVG 577
T T+ ++ +A LF+ + L+ L V + G VG
Sbjct: 96 ---------------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT----SRGR--AVG 134
Query: 578 ILTRQDLR 585
++ +++
Sbjct: 135 CVSWVEMK 142
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 54.7 bits (132), Expect = 7e-09
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 28/178 (15%)
Query: 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGL 470
TVG+ + + + + V +++L G PV+D+ L G+
Sbjct: 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----------WTLVGV 52
Query: 471 ILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLH 530
+ L+ Q ++ EL + K V + M
Sbjct: 53 VSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVV-GDLM------- 104
Query: 531 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAF 587
+P V +S ++ A L + R L VV +A G ++GILTR + +RA
Sbjct: 105 ---TPSPLVVRDSTNLEDAARLLLETKFRRLPVV---DADGK--LIGILTRGNVVRAA 154
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 50.7 bits (122), Expect = 1e-07
Identities = 27/183 (14%), Positives = 51/183 (27%), Gaps = 47/183 (25%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEG--VVPPSGLANVAT 465
M+ V +LI + + +IVD + + +V
Sbjct: 13 MKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLV---------- 60
Query: 466 ELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEM 525
G+I HL+ +F + ++ E+ M
Sbjct: 61 ---GMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI-------AKNASEI--------M 102
Query: 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-L 584
P V + +A+ L ++ + VV + G +VG L + L
Sbjct: 103 ---------LDPVYVHMDTPLEEALKLMIDNNIQEMPVV---DEKGE--IVGDLNSLEIL 148
Query: 585 RAF 587
A
Sbjct: 149 LAL 151
Score = 36.5 bits (85), Expect = 0.008
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 593
+ P V E + + + + + + V +VG++ L + F
Sbjct: 23 SLKPTVVEEDTPIEEIVDRILEDPVTRTVYV---ARDNK--LVGMIPVMHLLKVSGFHFF 77
Query: 594 PHLERSK 600
+ + +
Sbjct: 78 GFIPKEE 84
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 51.2 bits (121), Expect = 3e-07
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 520 SEEMEMYIDLHPLT-NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578
E + ++ + +P+ ++E S+ K LF +GL V +VG+
Sbjct: 181 QREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM------GKLVGV 234
Query: 579 LTRQDLR 585
+ +++
Sbjct: 235 VALAEIQ 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-06
Identities = 93/580 (16%), Positives = 155/580 (26%), Gaps = 204/580 (35%)
Query: 91 SLE---EVAT--WWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSN 145
SLE V T ++ ++ L F T G D
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEP-------------------TEGFAADDEPT 55
Query: 146 VPV----RY--HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLAL 199
P ++ +V ++ + +G +L + L ++ H L L
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-------HALAAKL 108
Query: 200 SVSVFTSVCQ---YCLPFLADCKACDPSFPETCP----TNGRSGNFK---QFNCPNG--- 246
T++ + ++ F + GN + F G
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG---GQGN 165
Query: 247 -------------HYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYC-ILGL 292
Y+ L L+ + + + + T + + F IL
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL--IRTTLDAEK-----VFTQGLNILEW 218
Query: 293 ITFGIAVPSGLFL-------PIILMGSA--Y---GRLLGMAMGSYTNIDQGL----YAVL 336
+ P +L P+I + Y +LLG G + +G ++
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 337 GAASL-MAGSMRMTVSLCVIFLELTNNLL-LL-----------PITMIVLLIAKTVGDSF 383
A ++ S S F + +L P T S
Sbjct: 279 TAVAIAETDSWE---S----FFVSVRKAITVLFFIGVRCYEAYPNT------------SL 319
Query: 384 NPSIYEIILEL-KGLPFLDAHPEPWM---RTLTVGELIDAKPPVITLSGIEKV------- 432
PSI E LE +G+P P M LT ++ D + K
Sbjct: 320 PPSILEDSLENNEGVP----SP---MLSISNLTQEQVQDY---------VNKTNSHLPAG 363
Query: 433 SQIVDVLRNTTHNGFPVLDEGVV--PPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490
Q+ L N N VV PP L L L L+K K
Sbjct: 364 KQVEISLVNGAKN-L------VVSGPPQSLY-------------GLNLTLRK-----AKA 398
Query: 491 RTEEWEVREKFSWVELAEREGKIEEV--AVTSEEMEMYIDLHPLTNTTPYTVIESMSVAK 548
+ + R FS ER+ K V S H + + A
Sbjct: 399 PSGLDQSRIPFS-----ERKLKFSNRFLPVASP-------FH-----SHL-----LVPAS 436
Query: 549 AMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588
++ + + ++ K PV DLR +
Sbjct: 437 DLIN-KDLVKNNVSFNAKDIQI---PVYDTFDGSDLRVLS 472
Score = 41.2 bits (96), Expect = 0.001
Identities = 70/378 (18%), Positives = 109/378 (28%), Gaps = 146/378 (38%)
Query: 54 QWLRYFNNDRDRRDLITCGSS---SGV---------C-------AAFRAPVGGVLFSLEE 94
+WL +N D+ L++ S GV R+ + G +
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 95 VATWWRSALL------WRTFFSTAVVVVVLRAFIEICTSGKCGL-----FGTGGLI---- 139
+ T A+ W +FF + + + FI G+ + L
Sbjct: 277 LVT----AVAIAETDSWESFFVSVRKAITVLFFI--------GVRCYEAYPNTSLPPSIL 324
Query: 140 -------------MFDVSNVPVRYHVMDIIPVT---L-------IGIIGG----ILGG-- 170
M +SN+ + V D + T L I ++ G ++ G
Sbjct: 325 EDSLENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 171 --LY--NHILHKVLRLYNLINQKGKMH---KLLLA---LSVSV-FTSVCQYCLPFLADCK 219
LY N L K L +Q KL + L V+ F S L
Sbjct: 384 QSLYGLNLTLRKAKAPSGL-DQSRIPFSERKLKFSNRFLPVASPFHS------HLLVPAS 436
Query: 220 ACDPSFPETCPTNGRSGNFKQFNCP-----NGHYNDLATLLLTTNDDAVRNIFSSNTP-- 272
+ N S N K P +G DL L + ++ V I P
Sbjct: 437 ---DLINKDLVKNNVSFNAKDIQIPVYDTFDGS--DLRVLSGSISERIVDCIIRL--PVK 489
Query: 273 ----TEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNI 328
T+F+ + IL FG P G S G L
Sbjct: 490 WETTTQFKATHIL------------DFG---PGGA--------SGLGVLT-------HRN 519
Query: 329 DQGLYAVLGAASLMAGSM 346
G G ++AG++
Sbjct: 520 KDG----TGVRVIVAGTL 533
Score = 35.0 bits (80), Expect = 0.086
Identities = 59/343 (17%), Positives = 91/343 (26%), Gaps = 126/343 (36%)
Query: 311 GSAYGRLLGMAMGSYTN----------IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
GS GM M Y D G S+ I +
Sbjct: 1625 GSQE---QGMGMDLYKTSKAAQDVWNRADNHFKDTYG------------FSILDI---VI 1666
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NN P+ + + G I E + +D +T + + I+
Sbjct: 1667 NN----PVNLTIHF-----GGEKGKRIRENYSAMIFETIVDGKL----KTEKIFKEINEH 1713
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVL------------DEGVVPPSGLANVATELH 468
T + +L + T P L +G++P A A
Sbjct: 1714 STSYTFRSEK------GLL-SATQFTQPALTLMEKAAFEDLKSKGLIPAD--ATFA---- 1760
Query: 469 GLILRAH-------LV-LALKKKWFLQEKRRTEEWEVREKFSW---VEL-AEREGKIEEV 516
G H L LA +V S VE+ R G +V
Sbjct: 1761 G-----HSLGEYAALASLA----------------DV---MSIESLVEVVFYR-GMTMQV 1795
Query: 517 AVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA------ 570
AV +E+ + + P V S S + +VG R +V E
Sbjct: 1796 AVPRDELGR--SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV---EIVNYNVEN 1850
Query: 571 ----------GVSPVVGILTRQDLRAFNI--LTAFPHLERSKS 601
+ V +L L+ +I L LE +
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 31.9 bits (72), Expect = 0.67
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 20/67 (29%)
Query: 220 ACDPS----------FPETCPTNG-RSGNFKQ---FNCPN------GHYNDLATLLLTTN 259
A +P G R+G + +N N G L T+ N
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
Query: 260 DDAVRNI 266
++ I
Sbjct: 1871 FIKLQKI 1877
Score = 29.6 bits (66), Expect = 4.4
Identities = 45/249 (18%), Positives = 73/249 (29%), Gaps = 91/249 (36%)
Query: 22 LDLGKEGPL---VHIGSCIASLLGQGGPDNHRIKWQWLRY----FNNDRDRRDLITC--- 71
LD+ P+ +H G G+ G RI+ Y F D +
Sbjct: 1662 LDIVINNPVNLTIHFG-------GEKG---KRIR---ENYSAMIFETIVDGKLKTEKIFK 1708
Query: 72 ---GSSSGVCAAFRAPVGGVLFS---------LEEVATW--WR----------------- 100
S+ FR+ G+L + L E A + +
Sbjct: 1709 EINEHSTSYT--FRSE-KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 101 --SAL------LWRTFFSTAVVVVVLR--AFIEICTSGKCGLFGTGGLIMFDVSNVPVRY 150
+AL + + V VV R + G G+I + V +
Sbjct: 1766 EYAALASLADVM---SIESLVEVVFYRGMTMQVAVPRDELGR-SNYGMIAINPGRVAASF 1821
Query: 151 HVMDIIPVTLIGIIGGILGGL-----YN----------HI--LHKVLRLYNLIN-QKGKM 192
+ V + +G G L YN + L V + N I QK +
Sbjct: 1822 SQEALQYV--VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 193 HKLLLALSV 201
+L +LS+
Sbjct: 1880 IELQKSLSL 1888
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 45.5 bits (108), Expect = 7e-06
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 52/182 (28%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
+TV + V + + + VL T ++ PVLD +L
Sbjct: 8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----------YKL 56
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
HGLI ++ A+ E+ + L K+EEV M
Sbjct: 57 HGLISMTMMMDAILGL---------------ERIEFERLETM--KVEEV------M---- 89
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRA 586
N + S+ KA+ L V + V GI TR++ L+
Sbjct: 90 ------NRNIPRLRLDDSLMKAVGLI--VNHPFVCVENDDGY-----FAGIFTRREVLKQ 136
Query: 587 FN 588
N
Sbjct: 137 LN 138
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 43.2 bits (102), Expect = 4e-05
Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 52/182 (28%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
+ + V +L+ + V + + + VL + ++ PVLD +L
Sbjct: 12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY-----------KL 60
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
HGLI A ++ + E+ + L E K+E+V M
Sbjct: 61 HGLISTAMILDGILGL---------------ERIEFERLEEM--KVEQV------M---- 93
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRA 586
+ S AKA+ + + + V + GILTR+ L+
Sbjct: 94 ------KQDIPVLKLEDSFAKALEMT--IDHPFICAVNEDGY-----FEGILTRRAILKL 140
Query: 587 FN 588
N
Sbjct: 141 LN 142
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 44.6 bits (105), Expect = 5e-05
Identities = 35/234 (14%), Positives = 68/234 (29%), Gaps = 47/234 (20%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE------GVVPPSGLA 461
M++ +LI ++ +V + L P+ D G++ +
Sbjct: 32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91
Query: 462 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE----VREKFSWVELAER--EGKIEE 515
N+ + L L K +E + ++ + S + KI
Sbjct: 92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHR 151
Query: 516 VAVTSEEMEMYI------------------------------DLHPLTNTTPYTVIESMS 545
+ V E + +L T V +
Sbjct: 152 LPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTP 211
Query: 546 VAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERS 599
V A+ +F Q + L VV + G VV I ++ D+ + +L+ S
Sbjct: 212 VYVALGIFVQHRVSALPVV---DEKGR--VVDIYSKFDVINLAAEKTYNNLDVS 260
Score = 34.2 bits (78), Expect = 0.11
Identities = 22/191 (11%), Positives = 53/191 (27%), Gaps = 49/191 (25%)
Query: 399 FLDAHPEPWMRTLTVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457
F+ P+P + ++ EL I + + V + + + PV+DE
Sbjct: 178 FITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG--- 234
Query: 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVA 517
+ + + ++ +K + + + +
Sbjct: 235 --------RVVDIYSKFDVINLAAEKTY---------------------NNLDVSVTKAL 265
Query: 518 VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVG 577
++ + + + L+VV + V V G
Sbjct: 266 QHRSHY----------FEGVLKCYLHETLEAIINRLVEAEVHRLVVV---DEHDV--VKG 310
Query: 578 ILTRQD-LRAF 587
I++ D L+A
Sbjct: 311 IVSLSDILQAL 321
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 43.6 bits (103), Expect = 9e-05
Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 41/180 (22%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
M + ++T+ + + + + + PV++ G ++
Sbjct: 1 MFVRVMKIA--QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG----------NNKV 48
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
G+I +V + ++ +REK LA + E+ +
Sbjct: 49 VGIITSMDIVDFM--------GGGSKYNLIREKHERNFLAAINEPVREIMEEN------- 93
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
T+ E+ + +A+ F + +V ++ ++T +D+
Sbjct: 94 ---------VITLKENADIDEAIETFLTKNVGGAPIV---NDENQ--LISLITERDVIRA 139
Score = 42.8 bits (101), Expect = 2e-04
Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 47/190 (24%)
Query: 399 FLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPS 458
+ A + + + I VI + E++ + + PV+ EG
Sbjct: 136 VIRALLDKIDENEVIDDYI--TRDVIVATPGERLKDVARTMVRNGFRRLPVVSEG----- 188
Query: 459 GLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAV 518
L G+I + L W + E+ ++EE+
Sbjct: 189 -------RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNV-----------RMEEIMK 230
Query: 519 TSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578
T E + K + + L VV + + GI
Sbjct: 231 RD----------------VITAKEGDKLKKIAEIMVTNDIGALPVV---DENLR--IKGI 269
Query: 579 LTRQD-LRAF 587
+T +D L+ F
Sbjct: 270 ITEKDVLKYF 279
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 41.4 bits (98), Expect = 1e-04
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 58/177 (32%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
M V E + K VI+++ K++ I V+ V+D +
Sbjct: 1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN------------KP 46
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
G+I +V A+ K L E K EE M
Sbjct: 47 VGIITERDIVKAIGKGKSL-----------------------ETKAEEF--------M-- 73
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ T+ E + A+ L RQ +RHL VV + G + GI++ +D+
Sbjct: 74 ------TASLITIREDSPITGALALMRQFNIRHLPVV---DDKGN--LKGIISIRDI 119
Score = 31.4 bits (72), Expect = 0.28
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
T +V + + + + + ++VV + VGI+T +D+
Sbjct: 11 KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK------PVGIITERDIV 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 76/236 (32%)
Query: 390 IILELKGLP----FLDAHPEP---WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT 442
L K F++ ++ + E P ++T IE+ R+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQ--------RDR 118
Query: 443 THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTE--------- 493
+N V + V R L L++ L E R +
Sbjct: 119 LYNDNQVFAKYNVS----------------RLQPYLKLRQA--LLELRPAKNVLIDGVLG 160
Query: 494 ------------EWEVREKFS----WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537
++V+ K W+ L E V +EM L +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETV------LEMLQKLLYQIDPNW 213
Query: 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL----TRQDLRAFNI 589
+ + S K + Q LR LL YE + +L + AFN+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNL 264
Score = 41.0 bits (95), Expect = 0.001
Identities = 57/377 (15%), Positives = 108/377 (28%), Gaps = 98/377 (25%)
Query: 167 ILGGLYNHILHKVL-RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 225
+L L I R + N K ++H + L + + + CL L + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKA 258
Query: 226 PETCPTNGRSGNFKQFN--CPNGHYNDLATLLLTTNDDAVRNIFSSNTPTE--------- 274
+ FN C +LLTT V + S+ T T
Sbjct: 259 ------------WNAFNLSC---------KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 275 FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLL--GMAMGSY---TNID 329
P + + Y L + P L S + G+A N D
Sbjct: 298 LTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCD 353
Query: 330 QGLYAVLGA--ASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSI 387
+ L ++ + L R +F + I I+L + +
Sbjct: 354 K-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH------IPTILLSLIWFDVIKSDVM- 405
Query: 388 YEIILELKGLPFLDAHPEPWMRTLTVGEL-IDAKPPVITLSGIEKVSQIVD---VLRNTT 443
++ +L ++ P+ T+++ + ++ K + + + IVD + +
Sbjct: 406 -VVVNKLHKYSLVEKQPKE--STISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFD 460
Query: 444 HNGF--PVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK- 500
+ P LD +H+ LK E +
Sbjct: 461 SDDLIPPYLD-----------------QYFY-SHIGHHLKN------IEHPERMTLFRMV 496
Query: 501 ---FSWVELAEREGKIE 514
F ++ E KI
Sbjct: 497 FLDFRFL-----EQKIR 508
Score = 39.8 bits (92), Expect = 0.003
Identities = 62/448 (13%), Positives = 116/448 (25%), Gaps = 137/448 (30%)
Query: 141 FDVSNVPVRYHVMDIIPVTLIGIIG------------GILGGL-YNHIL------HKVLR 181
F+ +Y DI+ V + IL +HI+ LR
Sbjct: 9 FETGEH--QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 182 LYNLINQKGKMHKLLLALSVSVFT-SVCQYCLPFLAD-----CKACDPSFP----ETCPT 231
L+ + K + V F V + FL + PS
Sbjct: 67 LFWTLLSKQEE-------MVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMYIEQRD 117
Query: 232 NGRSGN--FKQFNCPNGH-YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYC 288
+ N F ++N Y L LL E +P+ + ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALL-----------------ELRPAKNV---LID- 156
Query: 289 ILGLITFGIAVPSGLFLPIILMGSA---YGRLLGMAMGSYTNIDQGLYAVLGAASLMAGS 345
G++ G + Y M + + L +
Sbjct: 157 --GVLGSGKTW---------VALDVCLSYKVQCKMDFKIF-------WLNLKNCNSPETV 198
Query: 346 MRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPE 405
+ M L ++ N + I+ I EL+ L +
Sbjct: 199 LEMLQKLL---YQIDPNWTSRSDHS----------SNIKLRIHSIQAELRRLLKSKPYE- 244
Query: 406 PWMRTLTV------GELIDA-----KPPVITLSGIEKVSQIVDVLRNTTHNGFPV--LDE 452
L V + +A K + T + Q+ D L T +
Sbjct: 245 ---NCLLVLLNVQNAKAWNAFNLSCKILLTT-----RFKQVTDFLSAATTTHISLDHHSM 296
Query: 453 GVVPPSG---LANV----ATELHGLILRAH-LVLALKKKWFLQEKRRTEEWE--VREKFS 502
+ P L +L +L + L++ + + W+ +K +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 503 WVELAEREGKIEEVAVTSEEM-EMYIDL 529
+ E + + E +M+ L
Sbjct: 357 TI----IESSLN--VLEPAEYRKMFDRL 378
Score = 32.9 bits (74), Expect = 0.34
Identities = 46/301 (15%), Positives = 77/301 (25%), Gaps = 98/301 (32%)
Query: 23 DLGKE----GPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDR--------------- 63
DL +E P S IA + + W ++ N D+
Sbjct: 317 DLPREVLTTNPRRL--SIIAESI-----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 64 DRRDLITCGSSSGVCAAFRAPV---GGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
+ R + + F +L +L+W + V+VV+
Sbjct: 370 EYRKMFD------RLSVFPPSAHIPTILL------------SLIWFD-VIKSDVMVVVNK 410
Query: 121 FIEIC------TSGKCGLFGTGGLIMFDVS-----------------NVPVRYHVMDIIP 157
+ + I ++ N+P + D+IP
Sbjct: 411 LHKYSLVEKQPKESTISIPS----IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 158 VTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALS--------VSVFTSVCQ 209
L Y+HI H L+ + + L S +
Sbjct: 467 PYLDQYF-------YSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 210 YCLPFLADCKACDPSFPETCPTNGRS-GNFKQF------NCPNGHYNDLATLLLTTNDDA 262
L L K P + P R F N Y DL + L D+A
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 263 V 263
+
Sbjct: 579 I 579
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 40.3 bits (95), Expect = 3e-04
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+P TV+++ V A R+ +RH++VV G +VG+L+ +DL
Sbjct: 78 NSPITVLDTDPVHVAAEKMRRHNIRHVVVV---NKNGE--LVGVLSIRDL 122
Score = 32.2 bits (74), Expect = 0.16
Identities = 4/52 (7%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
P ++ E+ ++ + + + ++ V +++ +D+
Sbjct: 12 KRPPVSLPETATIREVATELAKNRVGLAVLT---ARDNPKRPVAVVSERDIL 60
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 40.9 bits (96), Expect = 3e-04
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 52/178 (29%)
Query: 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLI 471
TVG+ + V + + + VL T + PVLD LHGLI
Sbjct: 15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLI 63
Query: 472 LRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP 531
++ ++ E+ + +L + +EEV M
Sbjct: 64 GTNMIMNSIFGL---------------ERIEFEKLDQI--TVEEV--------M------ 92
Query: 532 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAFN 588
T + + + K + + + V + GI TR+ L+ N
Sbjct: 93 --LTDIPRLHINDPIMKGFGMV--INNGFVCVENDEQV-----FEGIFTRRVVLKELN 141
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 41.3 bits (97), Expect = 6e-04
Identities = 20/169 (11%), Positives = 37/169 (21%), Gaps = 46/169 (27%)
Query: 419 AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478
LS +++ + V +E + GL+ L+
Sbjct: 26 MIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE-------------GLLTTRDLL- 71
Query: 479 ALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 538
E + I + P
Sbjct: 72 -----------STVESYCKDSCSQGDLYHISTTPIIDYM----------------TPNPV 104
Query: 539 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
TV + A+ + L VV + VGI+T ++
Sbjct: 105 TVYNTSDEFTAINIMVTRNFGSLPVVDINDK-----PVGIVTEREFLLL 148
Score = 35.9 bits (83), Expect = 0.032
Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 51/189 (26%)
Query: 400 LDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 459
+ V + V T+ ++ Q V ++ PV+D+
Sbjct: 145 FLLLYKDLDEIFPVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD------ 196
Query: 460 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVT 519
++ G++ + + L K + V++
Sbjct: 197 -----NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD-------------------- 231
Query: 520 SEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL 579
M T T+ E SV +A + LL++ + GI+
Sbjct: 232 ----VM--------VTNLVTIDELASVNRAAAEMIVKRIGSLLIL---NKDNT--IRGII 274
Query: 580 TRQD-LRAF 587
T +D L A
Sbjct: 275 TERDLLIAL 283
Score = 34.4 bits (79), Expect = 0.084
Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 56/164 (34%)
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
P +T+ ++++ PV+D + G++ +L
Sbjct: 101 PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----------DKPVGIVTEREFLLLY 149
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
K + ++ +T T+
Sbjct: 150 KDL------------------------DEIFPVKVF----------------MSTKVQTI 169
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ + + +A+ L + G R L V+ + VVGI+T +
Sbjct: 170 YKEVRLDQAVKLMLRRGFRRLPVI---DDDNK--VVGIVTVVNA 208
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 38.7 bits (91), Expect = 0.001
Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 49/185 (26%)
Query: 405 EPWMRTLTVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANV 463
E + +G+L I + + + V ++ +L + P++DE
Sbjct: 2 ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE----------- 50
Query: 464 ATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEM 523
L + ++ +K + + + E + +
Sbjct: 51 NGYLINVYEAYDVLGLIKGGIY---------------------NDLSLSVGEALMRRSDD 89
Query: 524 EMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 583
YT ++ ++ M R+ + VV + G +VG+LT D
Sbjct: 90 ----------FEGVYTCTKNDKLSTIMDNIRKARVHRFFVV---DDVGR--LVGVLTLSD 134
Query: 584 -LRAF 587
L+
Sbjct: 135 ILKYI 139
Score = 32.1 bits (74), Expect = 0.19
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
DL+ +T + + V + + Q + + ++ + G ++ + D+
Sbjct: 12 DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII---DENGY--LINVYEAYDVLGL 66
Query: 588 NILTAFPHLERS 599
+ L S
Sbjct: 67 IKGGIYNDLSLS 78
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 38.9 bits (91), Expect = 0.001
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 53/178 (29%)
Query: 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLI 471
+ + L +L T+ PV+ + + G I
Sbjct: 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----------KQFVGTI 64
Query: 472 LRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP 531
++ + QE I +
Sbjct: 65 GLRDIMAYQMEHDLSQEIMADT------------------DIVHM------T-------- 92
Query: 532 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAFN 588
T V ++ + + V L VV +A G+ GI+TR+ L+A N
Sbjct: 93 --KTDVAVVSPDFTITEVLHKL--VDESFLPVV---DAEGI--FQGIITRKSILKAVN 141
Score = 30.4 bits (69), Expect = 0.77
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 512 KIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG 571
+ E + EE + P N +I++ + A +L Q+ + VV +
Sbjct: 8 EFETFLLGQEETFL----TPAKNL--AVLIDTHNADHATLLLSQMTYTRVPVVTDEKQ-- 59
Query: 572 VSPVVGILTRQDLRAF 587
VG + +D+ A+
Sbjct: 60 ---FVGTIGLRDIMAY 72
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 38.1 bits (89), Expect = 0.003
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
+ P + E++SV A+ + L VV + +VG+L+R+DL
Sbjct: 24 SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAV-----LVGVLSRKDLL 69
Score = 34.6 bits (80), Expect = 0.032
Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL-RAF 587
V + + L V+ + V+G +T+ ++ +
Sbjct: 90 MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFE--VIGRVTKTNMTKIL 142
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 37.1 bits (87), Expect = 0.003
Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 59/178 (33%)
Query: 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGL 470
+ V +++ V T+ + ++ V+ EG G+
Sbjct: 1 MRVEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG------------VRVGI 46
Query: 471 ILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLH 530
+ ++ A+ + L E K+ EV M
Sbjct: 47 VTTWDVLEAIAEGDDLAEV----------------------KVWEV--------M----- 71
Query: 531 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAF 587
T+ ++ +A + + LLV E ++G+++ D LRA
Sbjct: 72 ---ERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE------IIGVISATDILRAK 120
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 38.2 bits (89), Expect = 0.003
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588
V ES +V + + RQ +V + G G++ ++DL +
Sbjct: 20 TQDFPMVEESATVRECLHRMRQYQTNECIVK---DREGH--FRGVVNKEDLLDLD 69
Score = 30.1 bits (68), Expect = 1.5
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAFNILTAF 593
+ V E ++ A++LF + +L VV + + G ++ D L A A
Sbjct: 82 DFFVHEEDNITHALLLFLEHQEPYLPVVDEEMR-----LKGAVSLHDFLEALIEALAM 134
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 36.6 bits (85), Expect = 0.004
Identities = 20/174 (11%), Positives = 45/174 (25%), Gaps = 58/174 (33%)
Query: 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGL 470
+T L + PV TL + L + PVLD G+
Sbjct: 5 VTFSYLAETDYPVFTLG--GSTADAARRLAASGCACAPVLDGE------------RYLGM 50
Query: 471 ILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLH 530
+ + L+ K ++E K+ E + +
Sbjct: 51 VHLSRLLEGRKGWPTVKE-----------------------KLGEELLET---------- 77
Query: 531 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ + ++ + + + G G+++R+ +
Sbjct: 78 ------VRSYRPGEQLFDNLISVAAAKCSVVPLA---DEDGR--YEGVVSRKRI 120
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 37.0 bits (86), Expect = 0.006
Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 55/175 (31%)
Query: 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHG 469
+ V +++ T++ V V ++ G V D+ G
Sbjct: 8 FMRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----------GNDVG 54
Query: 470 LILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDL 529
L+ +E + ++F E I V M
Sbjct: 55 LL--------------------SE-RSIIKRFIPRNKKPDEVPIRLV--------M---- 81
Query: 530 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
V V + GL VV + G VVGI+T DL
Sbjct: 82 ----RKPIPKVKSDYDVKDVAAYLSENGLERCAVV---DDPGR--VVGIVTLTDL 127
Score = 33.1 bits (76), Expect = 0.14
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
N+ TV + +V A+ + + L L+V VG+L+ + +
Sbjct: 16 NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGN-----DVGLLSERSII 62
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 36.5 bits (85), Expect = 0.007
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
P+T++ + ++ A L + +RH+ +V +A ++GI++++DL
Sbjct: 13 RHPHTLLRTHTLNDAKHLMEALDIRHVPIV---DANKK--LLGIVSQRDLL 58
Score = 32.7 bits (75), Expect = 0.14
Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 48/168 (28%)
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
TL ++ ++ P++D +L G++ + L+ A
Sbjct: 13 RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-----------NKKLLGIVSQRDLLAAQ 61
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
+ ++ + + E + EV M +T +V
Sbjct: 62 ESSL--------------QRSAQGDSLAFETPLFEV--------M--------HTDVTSV 91
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAF 587
+ ++ + ++ + L VV K +VGI+T D +
Sbjct: 92 APQAGLKESAIYMQKHKIGCLPVVAKDV------LVGIITDSDFVTIA 133
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 36.0 bits (84), Expect = 0.008
Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 56/177 (31%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
T +++ V + E ++ +R P+ + L
Sbjct: 5 FTMTTARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGDD-----------DRL 51
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
HG++ T+ ++ K L E+
Sbjct: 52 HGML--------------------TD-RDIVIKGLAAGLDPNTATAGEL--------A-- 80
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ Y V + S+ + + + + +R + V+ ++ +VGI+T D+
Sbjct: 81 ------RDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHR------LVGIVTEADI 125
Score = 36.0 bits (84), Expect = 0.009
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
N V E ++ A R+ + L + + + G+LT +D+
Sbjct: 15 NAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDR-----LHGMLTDRDIV 61
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 35.7 bits (83), Expect = 0.011
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
T + + + + + ++H+L+ + + +VGI T DL
Sbjct: 80 RNLITANVNTPLGEVLRKMAEHRIKHILIEEEGK------IVGIFTLSDL 123
Score = 35.7 bits (83), Expect = 0.011
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 522 EMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581
M+M + V S SV +A L + + L+V+ VVG T+
Sbjct: 2 VMDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGN-----VVGFFTK 56
Query: 582 QDLR 585
D+
Sbjct: 57 SDII 60
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 35.7 bits (83), Expect = 0.012
Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 50/195 (25%)
Query: 399 FLDAHPEPWMRTLTVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457
P+P + ++ EL I + + V + + + PV+DE
Sbjct: 6 HHHEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE----- 60
Query: 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVA 517
+ + +++V + + + +
Sbjct: 61 ------KGRVVDIY---------------------SKFDVINLAAEKTYNNLDVSVTKAL 93
Query: 518 VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVG 577
++ + + + L+VV + V V G
Sbjct: 94 QHRSHY----------FEGVLKCYLHETLETIINRLVEAEVHRLVVV---DENDV--VKG 138
Query: 578 ILTRQD-LRAFNILT 591
I++ D L+A +LT
Sbjct: 139 IVSLSDILQAL-VLT 152
Score = 33.0 bits (76), Expect = 0.12
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
+L T V + V A+ +F Q + L VV + G VV I ++ D+
Sbjct: 22 ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVV---DEKGR--VVDIYSKFDVINL 76
Query: 588 NILTAFPHLERS 599
+ +L+ S
Sbjct: 77 AAEKTYNNLDVS 88
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.018
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 482 KKWFLQEKRRTEEWEVRE---KFSWVELAEREGKIEEV-AVTSEEME 524
+KW ++++R +E + + W E A+++ +EE SE++E
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKD--LEEWNQRQSEQVE 132
Score = 35.9 bits (82), Expect = 0.021
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEME 524
QE +W RE+ L E + V +E
Sbjct: 82 QEPESIRKW--REEQR-KRLQELD---AASKVMEQEWR 113
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 36.1 bits (83), Expect = 0.027
Identities = 23/194 (11%), Positives = 60/194 (30%), Gaps = 32/194 (16%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
+ + T +++ +I L V + ++VL + P+ D +
Sbjct: 27 LNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK----------TSRF 76
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
GL+ + ++ + +++E+ +K L + E
Sbjct: 77 AGLLTTTDFINVIQYYF-----SNPDKFELVDKLQLDGLKDIERA--------------- 116
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
+ ++ S + +A + + + ++ + E VV +LT+ + F
Sbjct: 117 --LGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKF 174
Query: 588 NILTAFPHLERSKS 601
L
Sbjct: 175 VALNCRETHFLKIP 188
Score = 34.9 bits (80), Expect = 0.057
Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 50/218 (22%)
Query: 373 LLIAKTVGDSFNPSIYEIILELKGLPFLDAH-PEPWMRTLTVGEL-IDAKPPVITLSGIE 430
+ + ++ + ++ + + L F+ + E + +G+L I + + +
Sbjct: 148 IPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTT 207
Query: 431 KVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490
V ++ +L + P++DE L + ++ +K +
Sbjct: 208 PVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGIYNDLSL 256
Query: 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAM 550
E + YT ++ ++ M
Sbjct: 257 SVGE-------------------------------ALMRRSDDFEGVYTCTKNDKLSTIM 285
Query: 551 VLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAF 587
R+ + VV + G +VG+LT D L+
Sbjct: 286 DNIRKARVHRFFVV---DDVGR--LVGVLTLSDILKYI 318
Score = 31.5 bits (71), Expect = 0.74
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
DL+ +T + + V + + Q + + ++ + G ++ + D+
Sbjct: 191 DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII---DENGY--LINVYEAYDVLGL 245
Query: 588 NILTAFPHLERS 599
+ L S
Sbjct: 246 IKGGIYNDLSLS 257
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 34.6 bits (80), Expect = 0.036
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
V S S + M L + +RHL V+ + ++G+++ DL
Sbjct: 86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGK------LIGLISIGDL 129
Score = 29.9 bits (68), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 531 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
P + T YTV ++ V A+ L + G+ LLVV + + GI+T +D
Sbjct: 17 PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD------IAGIVTERDYA 65
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 35.2 bits (81), Expect = 0.044
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
P T+ + A+ LF++ +R VV G +VGI++ + +
Sbjct: 11 PVTITLPATRNYALELFKKYKVRSFPVV---NKEGK--LVGIISVKRIL 54
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 33.6 bits (78), Expect = 0.049
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
P T ++S+ +A + + + HL +V + G +VGI+T D+
Sbjct: 9 KPPITAHSNISIMEAAKILIKHNINHLPIV---DEHGK--LVGIITSWDIAKA 56
Score = 29.0 bits (66), Expect = 1.9
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAF 587
T E V + + + + VV + VVGI+T +D R F
Sbjct: 72 VITAHEDEPVDHVAIKMSKYNISGVPVV---DDYRR--VVGIVTSEDISRLF 118
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 33.7 bits (78), Expect = 0.058
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
V + + M L ++ +RHL V+ + V+G+L+ DL
Sbjct: 82 RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGK------VIGLLSIGDL 125
Score = 29.9 bits (68), Expect = 0.97
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
T + SV AM + LLV+ + +VGILT +D
Sbjct: 16 GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK------LVGILTERDFS 61
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 33.4 bits (77), Expect = 0.066
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
T V +A + + L V+ + V+GI+T D+
Sbjct: 15 TKNVITAKRHEGVVEAFEKMLKYKISSLPVI---DDENK--VIGIVTTTDIG 61
Score = 31.4 bits (72), Expect = 0.29
Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 62/186 (33%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
++ + V +++ VIT E V + + + + PV+D+ ++
Sbjct: 5 LKNIKVKDVM--TKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-----------ENKV 51
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
G++ + L + + E I +V M
Sbjct: 52 IGIVTTTDIGYNLIRDKYTLET----------------------TIGDV------M---- 79
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGL-----RHLLVVPKYEAAGVSPVVGILTRQ 582
T+ E S+ +A+ G L VV K +VGI++
Sbjct: 80 ------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNK-----LVGIISDG 128
Query: 583 D-LRAF 587
D +R
Sbjct: 129 DIIRTI 134
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 33.4 bits (77), Expect = 0.082
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 521 EEMEMYI-DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL 579
+ M ++ DL TV +S+ +A + ++V +A GV V+GI
Sbjct: 20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVT---DADGV--VLGIF 74
Query: 580 TRQDLR 585
T +DL
Sbjct: 75 TERDLV 80
Score = 33.4 bits (77), Expect = 0.098
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ + + M + RH+ V + GI++ D+
Sbjct: 101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGR------LAGIISIGDV 144
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine
protease/inhibitor), hydrolase/hydrolase inhibitor
complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Length = 99
Score = 31.4 bits (71), Expect = 0.19
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 191 KMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETC 229
KM +L L++++ V P P+ C
Sbjct: 1 KMSRLCLSVALLVLLGTLAASTPGCDTSNQAKAQRPDFC 39
>1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP:
b.25.1.1
Length = 206
Score = 31.4 bits (70), Expect = 0.64
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 211 CLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSN 270
C F D C S C S FK CP+ + + D + F+
Sbjct: 146 CPVFKKDEYCCVGSAANDCHPTNYSRYFKG-QCPDAY---------SYPKDDATSTFTCP 195
Query: 271 TPTEFQ 276
T ++
Sbjct: 196 AGTNYK 201
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 31.9 bits (71), Expect = 0.65
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 208 CQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDD 261
C+ L C P C + + G CP+G + + + D
Sbjct: 535 CEKMEDGLLTCHGPGPDNCTKCS-HFKDGPNCVEKCPDGLQGANSFIFKYADPD 587
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A
{Campylobacter jejuni}
Length = 252
Score = 30.6 bits (69), Expect = 1.2
Identities = 3/54 (5%), Positives = 20/54 (37%)
Query: 496 EVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKA 549
++ +L E+ + + + + + + + + T + ++ ++
Sbjct: 92 NFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNN 145
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 30.3 bits (67), Expect = 1.4
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 430 EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 483
+ V + + T ++ +PV+DE ++ G I R HL+ KKK
Sbjct: 203 DLVEDVKVTMSETRYSNYPVIDE-----------NNKVVGSIARFHLISTHKKK 245
Score = 28.3 bits (62), Expect = 5.8
Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 532 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591
L + +S+ A + R L+ + V ++G+L+ ++ A +
Sbjct: 12 LEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN-----HLLGMLSTSNITATYMDI 66
Query: 592 AFPHLERSKSGQKH 605
++ +
Sbjct: 67 WDSNILAKSATSLD 80
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 30.6 bits (69), Expect = 1.5
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 533 TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 592
T + T V + + + + + +V + G ++ + D+
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIV---NSEGT--LLNVYESVDVMHLIQDGD 245
Query: 593 FPHLERS 599
+ +L+ S
Sbjct: 246 YSNLDLS 252
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 27.9 bits (63), Expect = 1.8
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
V +V + + + +V+ E ++G++T +D+
Sbjct: 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDE------ILGVVTERDIL 44
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A
{Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A*
3lun_A*
Length = 262
Score = 30.0 bits (66), Expect = 2.0
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 221 CDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFS 268
D + + P G ++ +C NG D+ + DD +F+
Sbjct: 196 VDDTPNQADPNFGAP-SYPHVSCSNGPNGDMFMNYMDYVDDKCMVMFT 242
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 28.9 bits (64), Expect = 6.0
Identities = 3/41 (7%), Positives = 5/41 (12%), Gaps = 5/41 (12%)
Query: 208 CQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHY 248
Q D + C +
Sbjct: 159 AQPQ-----DAGVYSARYIGGNLFTSAFTRLIVRRCEAQKW 194
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 28.7 bits (65), Expect = 6.4
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
V + A + + ++ + V GV ++G++T++D
Sbjct: 107 DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGV--LLGLVTQRDYP 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.429
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,617,879
Number of extensions: 614178
Number of successful extensions: 1667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1575
Number of HSP's successfully gapped: 104
Length of query: 605
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 506
Effective length of database: 3,937,614
Effective search space: 1992432684
Effective search space used: 1992432684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)