Query 007390
Match_columns 605
No_of_seqs 349 out of 1560
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 22:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-158 2E-163 1338.3 54.1 585 19-604 9-595 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 7E-132 2E-136 1081.8 30.3 514 36-604 17-533 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 5.1E-91 1.1E-95 732.1 18.7 296 45-349 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.6E-36 5.7E-41 338.8 11.1 289 39-336 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 8.3E-22 1.8E-26 212.1 12.2 262 60-352 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 7E-13 1.5E-17 138.6 17.3 192 39-271 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 6.3E-11 1.4E-15 135.5 24.8 160 37-231 276-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.2 1.6E-10 3.5E-15 138.9 18.3 258 38-351 319-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 4.2E-10 9E-15 135.2 18.0 149 38-231 335-489 (1027)
10 PF02837 Glyco_hydro_2_N: Glyc 99.1 7.5E-10 1.6E-14 105.6 10.3 99 475-579 64-164 (167)
11 COG3250 LacZ Beta-galactosidas 99.0 6.3E-09 1.4E-13 121.4 15.4 121 36-198 283-409 (808)
12 PF00150 Cellulase: Cellulase 98.8 3.8E-08 8.2E-13 100.5 14.0 161 49-231 4-172 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 1.2E-07 2.6E-12 85.5 9.8 81 470-557 26-109 (111)
14 PRK10150 beta-D-glucuronidase; 98.5 9E-07 2E-11 101.6 11.7 100 475-580 61-178 (604)
15 PRK09525 lacZ beta-D-galactosi 98.2 6.6E-06 1.4E-10 99.5 12.3 94 478-580 119-217 (1027)
16 PRK10340 ebgA cryptic beta-D-g 98.2 5.7E-06 1.2E-10 100.1 10.6 94 478-580 108-205 (1021)
17 PF03198 Glyco_hydro_72: Gluca 98.2 2.4E-05 5.3E-10 81.8 13.7 157 33-227 5-179 (314)
18 smart00633 Glyco_10 Glycosyl h 98.1 8.7E-06 1.9E-10 83.6 8.4 117 91-232 3-126 (254)
19 TIGR03356 BGL beta-galactosida 97.8 5.1E-05 1.1E-09 83.8 8.2 97 68-176 54-151 (427)
20 PLN02705 beta-amylase 97.7 8.7E-05 1.9E-09 82.9 8.5 80 66-151 266-357 (681)
21 PLN02801 beta-amylase 97.7 0.00012 2.5E-09 80.8 8.7 80 66-151 35-126 (517)
22 PLN00197 beta-amylase; Provisi 97.7 0.00012 2.7E-09 81.1 8.8 80 66-151 125-216 (573)
23 PLN02905 beta-amylase 97.7 0.00014 3.1E-09 81.4 8.8 80 66-151 284-375 (702)
24 PLN02161 beta-amylase 97.6 0.00018 3.9E-09 79.3 8.9 81 66-152 115-207 (531)
25 PF13204 DUF4038: Protein of u 97.6 0.00026 5.7E-09 74.3 10.0 224 43-297 2-274 (289)
26 PLN02803 beta-amylase 97.6 0.0002 4.4E-09 79.3 8.9 80 66-151 105-196 (548)
27 PF01373 Glyco_hydro_14: Glyco 97.4 0.00018 4E-09 77.8 5.0 114 69-192 17-152 (402)
28 PF00232 Glyco_hydro_1: Glycos 97.0 0.00053 1.2E-08 76.4 4.5 97 68-176 58-156 (455)
29 PF00331 Glyco_hydro_10: Glyco 97.0 0.0011 2.4E-08 70.5 5.8 158 55-233 11-180 (320)
30 PRK15014 6-phospho-beta-glucos 96.9 0.0025 5.5E-08 71.4 7.8 95 69-175 70-167 (477)
31 COG3693 XynA Beta-1,4-xylanase 96.8 0.0073 1.6E-07 63.5 10.1 134 77-233 55-195 (345)
32 PF07745 Glyco_hydro_53: Glyco 96.8 0.0049 1.1E-07 65.9 8.6 139 71-228 27-173 (332)
33 PF14488 DUF4434: Domain of un 96.7 0.023 5E-07 55.0 11.9 136 63-229 15-159 (166)
34 PRK09852 cryptic 6-phospho-bet 96.6 0.0024 5.2E-08 71.6 4.8 95 69-175 72-169 (474)
35 PLN02998 beta-glucosidase 96.5 0.0025 5.4E-08 71.8 4.7 100 68-175 82-183 (497)
36 PLN02814 beta-glucosidase 96.4 0.003 6.5E-08 71.3 4.6 100 68-175 77-178 (504)
37 PRK09593 arb 6-phospho-beta-gl 96.4 0.0046 1E-07 69.4 5.7 100 68-175 73-175 (478)
38 PRK13511 6-phospho-beta-galact 96.4 0.0042 9.1E-08 69.6 5.3 95 69-175 55-150 (469)
39 TIGR01233 lacG 6-phospho-beta- 96.4 0.01 2.2E-07 66.5 8.3 95 69-175 54-149 (467)
40 COG3867 Arabinogalactan endo-1 96.3 0.033 7.1E-07 58.1 10.8 118 69-205 64-191 (403)
41 KOG0496 Beta-galactosidase [Ca 96.3 0.043 9.4E-07 62.6 12.7 71 478-557 556-627 (649)
42 PRK09589 celA 6-phospho-beta-g 96.3 0.0051 1.1E-07 69.0 5.2 100 68-175 67-169 (476)
43 PLN02849 beta-glucosidase 96.2 0.0052 1.1E-07 69.3 4.8 99 69-175 80-180 (503)
44 COG2730 BglC Endoglucanase [Ca 96.1 0.02 4.3E-07 63.0 8.7 137 44-198 43-193 (407)
45 PF14871 GHL6: Hypothetical gl 95.3 0.1 2.2E-06 48.7 9.0 98 72-174 4-123 (132)
46 KOG2024 Beta-Glucuronidase GUS 95.2 0.036 7.9E-07 56.8 5.9 56 475-531 84-139 (297)
47 PRK09936 hypothetical protein; 94.8 0.65 1.4E-05 48.7 13.8 57 64-126 34-91 (296)
48 COG2723 BglB Beta-glucosidase/ 94.7 0.035 7.6E-07 61.5 4.8 96 68-175 59-157 (460)
49 PF08531 Bac_rhamnosid_N: Alph 94.4 0.25 5.4E-06 47.9 9.4 92 501-597 5-114 (172)
50 KOG2230 Predicted beta-mannosi 94.2 0.62 1.3E-05 52.5 12.8 149 44-232 328-494 (867)
51 PF02055 Glyco_hydro_30: O-Gly 93.4 0.81 1.8E-05 51.8 12.5 334 51-413 74-491 (496)
52 smart00812 Alpha_L_fucos Alpha 92.6 19 0.00042 39.5 24.6 251 61-362 77-342 (384)
53 TIGR01515 branching_enzym alph 91.2 3.2 7E-05 48.3 14.1 55 75-129 164-228 (613)
54 smart00642 Aamy Alpha-amylase 91.1 0.59 1.3E-05 45.2 6.7 66 69-134 20-97 (166)
55 PF02638 DUF187: Glycosyl hydr 90.2 0.81 1.8E-05 48.7 7.4 116 66-193 17-161 (311)
56 COG3934 Endo-beta-mannanase [C 89.9 0.26 5.7E-06 54.5 3.3 157 45-219 3-168 (587)
57 COG1649 Uncharacterized protei 89.8 2 4.4E-05 47.4 10.2 123 65-197 61-210 (418)
58 TIGR00542 hxl6Piso_put hexulos 89.7 4.9 0.00011 41.5 12.6 131 67-225 15-149 (279)
59 PRK13210 putative L-xylulose 5 89.2 4.1 8.9E-05 41.9 11.5 132 68-225 16-149 (284)
60 COG3250 LacZ Beta-galactosidas 88.5 2.9 6.3E-05 50.1 11.0 88 462-555 45-133 (808)
61 PF05913 DUF871: Bacterial pro 88.3 0.72 1.6E-05 50.0 5.3 71 56-132 2-72 (357)
62 PRK05402 glycogen branching en 87.4 7.8 0.00017 46.1 13.7 51 75-128 273-336 (726)
63 PLN03059 beta-galactosidase; P 87.1 1.1 2.4E-05 53.4 6.2 68 480-555 620-714 (840)
64 PRK14706 glycogen branching en 86.7 15 0.00032 43.1 15.2 51 74-127 174-237 (639)
65 TIGR02631 xylA_Arthro xylose i 86.4 13 0.00029 40.7 13.9 91 66-175 30-125 (382)
66 PF14307 Glyco_tran_WbsX: Glyc 85.8 9.5 0.00021 41.1 12.3 140 64-232 54-198 (345)
67 PF01261 AP_endonuc_2: Xylose 85.3 2.2 4.7E-05 41.1 6.5 125 74-225 1-128 (213)
68 cd00019 AP2Ec AP endonuclease 85.0 7.4 0.00016 40.1 10.6 98 68-194 10-108 (279)
69 PLN02447 1,4-alpha-glucan-bran 84.6 18 0.00038 43.2 14.5 61 68-129 251-322 (758)
70 PRK12568 glycogen branching en 83.9 20 0.00043 42.7 14.5 59 73-134 275-346 (730)
71 PRK09441 cytoplasmic alpha-amy 82.8 2 4.4E-05 48.3 5.7 62 67-128 18-102 (479)
72 PF02679 ComA: (2R)-phospho-3- 82.1 2.5 5.3E-05 43.6 5.5 52 67-128 83-134 (244)
73 PRK01060 endonuclease IV; Prov 80.8 18 0.00038 37.2 11.5 93 70-191 14-109 (281)
74 PRK13398 3-deoxy-7-phosphohept 80.7 7.2 0.00016 40.7 8.5 82 36-127 13-98 (266)
75 PF00128 Alpha-amylase: Alpha 80.0 1.9 4E-05 44.1 3.9 59 71-129 7-74 (316)
76 PF01229 Glyco_hydro_39: Glyco 79.9 4.7 0.0001 45.5 7.4 65 58-128 29-105 (486)
77 PF08308 PEGA: PEGA domain; I 79.9 2.8 6E-05 34.2 4.1 39 503-551 3-41 (71)
78 COG3623 SgaU Putative L-xylulo 79.3 21 0.00045 36.7 10.7 89 66-175 16-106 (287)
79 PRK09856 fructoselysine 3-epim 77.9 35 0.00076 34.8 12.5 129 68-225 13-145 (275)
80 PRK13209 L-xylulose 5-phosphat 77.7 36 0.00079 34.9 12.7 126 68-225 21-154 (283)
81 PRK09997 hydroxypyruvate isome 77.3 38 0.00082 34.5 12.5 42 70-125 17-58 (258)
82 TIGR02403 trehalose_treC alpha 77.1 3.7 8E-05 47.1 5.5 61 69-129 28-97 (543)
83 PRK14705 glycogen branching en 76.5 46 0.00099 42.0 14.8 52 73-127 771-835 (1224)
84 cd06593 GH31_xylosidase_YicI Y 74.8 13 0.00027 39.3 8.4 70 65-134 21-93 (308)
85 TIGR02402 trehalose_TreZ malto 73.9 5.4 0.00012 45.8 5.8 53 72-127 115-180 (542)
86 PRK12313 glycogen branching en 73.5 6.5 0.00014 45.9 6.4 53 74-129 177-242 (633)
87 PF06832 BiPBP_C: Penicillin-B 73.0 8.4 0.00018 32.9 5.4 51 500-557 32-82 (89)
88 PF03659 Glyco_hydro_71: Glyco 72.3 12 0.00026 41.1 7.8 53 66-127 15-67 (386)
89 PF13200 DUF4015: Putative gly 72.2 13 0.00028 39.8 7.7 112 66-178 11-137 (316)
90 cd04908 ACT_Bt0572_1 N-termina 72.2 15 0.00032 29.4 6.4 55 67-125 12-66 (66)
91 PRK10933 trehalose-6-phosphate 71.7 8.2 0.00018 44.4 6.5 56 70-128 35-102 (551)
92 COG0296 GlgB 1,4-alpha-glucan 71.7 7.8 0.00017 45.1 6.3 57 67-126 164-233 (628)
93 PLN02960 alpha-amylase 71.4 8 0.00017 46.6 6.4 55 71-128 420-487 (897)
94 TIGR03849 arch_ComA phosphosul 71.0 8.2 0.00018 39.6 5.6 53 67-129 70-122 (237)
95 PF01791 DeoC: DeoC/LacD famil 71.0 1.7 3.6E-05 44.1 0.7 57 71-132 79-135 (236)
96 TIGR02456 treS_nterm trehalose 70.2 6.4 0.00014 45.1 5.2 59 68-126 28-95 (539)
97 PF13199 Glyco_hydro_66: Glyco 69.5 7.8 0.00017 44.6 5.7 80 67-146 117-211 (559)
98 KOG0626 Beta-glucosidase, lact 69.2 9.4 0.0002 43.3 6.1 113 69-191 92-208 (524)
99 PF14683 CBM-like: Polysacchar 69.0 7.7 0.00017 37.6 4.8 55 500-556 78-153 (167)
100 PLN00196 alpha-amylase; Provis 68.5 23 0.0005 39.5 9.0 59 71-129 47-114 (428)
101 COG3589 Uncharacterized conser 68.2 10 0.00023 40.7 5.8 72 56-134 4-76 (360)
102 KOG2230 Predicted beta-mannosi 67.6 10 0.00022 43.2 5.9 69 481-556 78-146 (867)
103 cd06592 GH31_glucosidase_KIAA1 67.5 37 0.00079 35.9 9.9 69 63-134 25-97 (303)
104 PRK09989 hypothetical protein; 67.2 57 0.0012 33.2 11.1 43 69-125 16-58 (258)
105 PRK12677 xylose isomerase; Pro 67.1 46 0.001 36.6 10.9 90 68-175 31-124 (384)
106 PRK14582 pgaB outer membrane N 66.0 37 0.00079 40.1 10.3 110 68-195 334-467 (671)
107 COG5520 O-Glycosyl hydrolase [ 65.9 1.7E+02 0.0037 32.1 14.2 86 116-222 111-206 (433)
108 PRK10785 maltodextrin glucosid 65.8 13 0.00028 43.2 6.6 57 71-127 182-246 (598)
109 PRK09505 malS alpha-amylase; R 64.9 12 0.00025 44.3 6.1 60 70-129 232-314 (683)
110 PF02065 Melibiase: Melibiase; 64.4 34 0.00073 37.8 9.2 112 60-171 50-179 (394)
111 PF12733 Cadherin-like: Cadher 64.3 20 0.00043 30.3 5.9 47 502-557 27-74 (88)
112 smart00518 AP2Ec AP endonuclea 63.9 58 0.0012 33.3 10.4 92 70-191 12-104 (273)
113 TIGR02104 pulA_typeI pullulana 63.6 13 0.00029 43.2 6.2 55 72-127 168-249 (605)
114 PRK14510 putative bifunctional 63.6 11 0.00024 47.5 5.8 57 72-128 191-268 (1221)
115 TIGR01531 glyc_debranch glycog 60.5 22 0.00048 45.0 7.4 111 45-161 104-234 (1464)
116 cd06589 GH31 The enzymes of gl 60.5 1.4E+02 0.003 30.8 12.5 65 66-131 22-90 (265)
117 TIGR02401 trehalose_TreY malto 58.6 21 0.00045 43.0 6.7 65 66-130 14-88 (825)
118 TIGR00677 fadh2_euk methylenet 58.3 41 0.00089 35.3 8.2 107 54-175 130-250 (281)
119 PLN02361 alpha-amylase 58.0 23 0.00051 39.1 6.5 57 71-127 32-96 (401)
120 PRK00042 tpiA triosephosphate 55.7 19 0.00041 37.2 5.1 51 72-128 77-127 (250)
121 cd06565 GH20_GcnA-like Glycosy 55.2 70 0.0015 33.8 9.4 66 66-134 15-87 (301)
122 TIGR00419 tim triosephosphate 54.8 24 0.00051 35.5 5.4 45 73-127 73-117 (205)
123 PRK14507 putative bifunctional 54.2 25 0.00055 45.5 6.7 63 66-131 756-831 (1693)
124 PRK09875 putative hydrolase; P 54.1 1.4E+02 0.003 31.7 11.3 89 38-146 7-95 (292)
125 PRK03705 glycogen debranching 53.8 22 0.00049 41.8 5.9 55 73-127 184-262 (658)
126 TIGR03234 OH-pyruv-isom hydrox 53.6 25 0.00054 35.6 5.5 43 69-125 15-57 (254)
127 PRK14511 maltooligosyl trehalo 53.2 29 0.00063 42.1 6.7 65 65-132 17-94 (879)
128 PF11324 DUF3126: Protein of u 52.7 26 0.00057 28.6 4.3 31 509-539 26-58 (63)
129 cd06595 GH31_xylosidase_XylS-l 51.9 56 0.0012 34.3 8.0 66 66-131 23-98 (292)
130 PF01261 AP_endonuc_2: Xylose 51.8 1.1E+02 0.0023 29.2 9.4 104 68-199 27-137 (213)
131 PF07691 PA14: PA14 domain; I 51.3 1.2E+02 0.0026 27.4 9.3 69 481-557 48-122 (145)
132 PF12876 Cellulase-like: Sugar 49.8 27 0.00058 29.8 4.3 48 183-230 7-63 (88)
133 cd06591 GH31_xylosidase_XylS X 48.9 33 0.00071 36.6 5.7 66 66-132 22-91 (319)
134 PF14587 Glyco_hydr_30_2: O-Gl 48.5 1.4E+02 0.003 32.9 10.4 120 96-231 93-226 (384)
135 cd00311 TIM Triosephosphate is 48.0 38 0.00082 34.9 5.8 74 49-128 52-125 (242)
136 PRK14566 triosephosphate isome 47.6 51 0.0011 34.4 6.7 74 48-128 62-136 (260)
137 TIGR02100 glgX_debranch glycog 47.5 96 0.0021 36.8 9.8 55 73-127 189-265 (688)
138 cd06545 GH18_3CO4_chitinase Th 47.1 87 0.0019 31.9 8.4 96 98-222 36-132 (253)
139 PRK08673 3-deoxy-7-phosphohept 46.7 73 0.0016 34.5 8.0 82 36-127 79-164 (335)
140 smart00481 POLIIIAc DNA polyme 45.4 62 0.0013 25.8 5.6 44 69-125 16-59 (67)
141 PRK14565 triosephosphate isome 45.2 36 0.00077 35.0 5.1 50 72-128 76-126 (237)
142 cd06598 GH31_transferase_CtsZ 44.8 44 0.00095 35.6 5.9 67 66-132 22-95 (317)
143 cd06599 GH31_glycosidase_Aec37 43.3 53 0.0012 34.9 6.3 66 67-132 28-98 (317)
144 cd02742 GH20_hexosaminidase Be 43.3 76 0.0016 33.5 7.4 60 65-127 13-92 (303)
145 cd06602 GH31_MGAM_SI_GAA This 43.1 42 0.00092 36.1 5.5 74 60-134 13-93 (339)
146 PF10566 Glyco_hydro_97: Glyco 43.0 80 0.0017 33.2 7.3 116 65-188 29-160 (273)
147 KOG3833 Uncharacterized conser 42.2 25 0.00055 37.5 3.5 53 69-127 444-499 (505)
148 cd06418 GH25_BacA-like BacA is 42.2 1.4E+02 0.0031 30.0 8.9 91 65-177 49-140 (212)
149 cd06601 GH31_lyase_GLase GLase 41.9 1.3E+02 0.0027 32.5 8.9 72 60-132 13-89 (332)
150 cd06600 GH31_MGAM-like This fa 41.6 45 0.00098 35.5 5.4 73 60-133 13-90 (317)
151 cd06603 GH31_GANC_GANAB_alpha 41.5 48 0.001 35.6 5.7 68 66-134 22-91 (339)
152 PRK12858 tagatose 1,6-diphosph 41.5 30 0.00066 37.4 4.1 65 60-127 99-163 (340)
153 TIGR02102 pullulan_Gpos pullul 41.5 45 0.00099 41.6 6.0 22 107-128 555-576 (1111)
154 PF03170 BcsB: Bacterial cellu 41.5 98 0.0021 35.9 8.6 47 511-557 63-112 (605)
155 PRK08645 bifunctional homocyst 41.4 74 0.0016 37.2 7.6 108 51-175 461-578 (612)
156 PF03170 BcsB: Bacterial cellu 40.9 1.1E+02 0.0023 35.6 8.8 71 486-557 329-411 (605)
157 PLN02429 triosephosphate isome 40.6 45 0.00097 35.8 5.1 49 73-128 139-188 (315)
158 COG1306 Uncharacterized conser 40.4 51 0.0011 35.1 5.3 59 66-127 75-144 (400)
159 cd06416 GH25_Lys1-like Lys-1 i 39.5 58 0.0013 31.9 5.5 88 57-147 55-157 (196)
160 PRK09856 fructoselysine 3-epim 38.4 40 0.00086 34.4 4.3 56 68-127 90-149 (275)
161 PTZ00333 triosephosphate isome 38.0 61 0.0013 33.7 5.6 50 73-128 81-130 (255)
162 cd06547 GH85_ENGase Endo-beta- 38.0 69 0.0015 34.6 6.2 115 84-229 32-148 (339)
163 PRK09267 flavodoxin FldA; Vali 37.9 2.4E+02 0.0053 26.6 9.4 74 48-124 44-117 (169)
164 TIGR02455 TreS_stutzeri trehal 37.3 79 0.0017 37.2 6.7 75 66-144 76-175 (688)
165 smart00758 PA14 domain in bact 37.0 1.4E+02 0.0031 26.9 7.3 65 481-554 46-111 (136)
166 cd06562 GH20_HexA_HexB-like Be 36.6 3.6E+02 0.0078 29.1 11.4 59 66-127 16-90 (348)
167 PF02228 Gag_p19: Major core p 36.3 16 0.00034 31.1 0.7 37 65-118 19-55 (92)
168 PF03422 CBM_6: Carbohydrate b 36.1 1.3E+02 0.0028 26.7 6.8 74 478-557 31-112 (125)
169 PRK15492 triosephosphate isome 35.9 74 0.0016 33.2 5.8 51 72-128 85-135 (260)
170 COG0149 TpiA Triosephosphate i 35.7 75 0.0016 33.0 5.7 71 50-128 58-129 (251)
171 PF04914 DltD_C: DltD C-termin 35.6 67 0.0014 30.0 4.9 59 107-190 36-95 (130)
172 COG0366 AmyA Glycosidases [Car 35.3 51 0.0011 36.5 4.8 56 72-127 33-97 (505)
173 TIGR01698 PUNP purine nucleoti 34.4 57 0.0012 33.6 4.6 40 47-86 47-87 (237)
174 cd06604 GH31_glucosidase_II_Ma 33.8 77 0.0017 34.0 5.8 73 60-133 13-90 (339)
175 cd01299 Met_dep_hydrolase_A Me 33.7 84 0.0018 33.1 6.0 59 66-127 118-180 (342)
176 PRK14567 triosephosphate isome 33.6 85 0.0018 32.6 5.7 50 73-128 77-126 (253)
177 PRK13210 putative L-xylulose 5 33.6 55 0.0012 33.4 4.5 60 68-128 94-154 (284)
178 TIGR00433 bioB biotin syntheta 33.3 64 0.0014 33.4 4.9 52 71-125 123-176 (296)
179 KOG4039 Serine/threonine kinas 33.1 78 0.0017 31.5 5.0 64 62-132 103-171 (238)
180 PF01055 Glyco_hydro_31: Glyco 33.0 72 0.0016 35.2 5.5 70 66-136 41-112 (441)
181 cd04882 ACT_Bt0572_2 C-termina 32.9 96 0.0021 23.8 4.8 55 67-123 10-64 (65)
182 PRK11114 cellulose synthase re 32.8 1.5E+02 0.0032 35.7 8.3 48 510-557 114-165 (756)
183 PTZ00372 endonuclease 4-like p 32.7 2.4E+02 0.0052 31.5 9.4 83 44-128 149-240 (413)
184 cd08560 GDPD_EcGlpQ_like_1 Gly 32.6 1.1E+02 0.0024 33.3 6.8 53 69-127 246-298 (356)
185 PF11008 DUF2846: Protein of u 32.5 79 0.0017 28.4 4.8 36 512-554 42-77 (117)
186 cd06597 GH31_transferase_CtsY 32.3 91 0.002 33.6 6.0 73 60-132 13-110 (340)
187 PLN02561 triosephosphate isome 31.6 96 0.0021 32.2 5.8 69 54-128 60-129 (253)
188 TIGR00587 nfo apurinic endonuc 31.5 3.4E+02 0.0074 28.0 9.9 83 71-175 14-98 (274)
189 PLN02784 alpha-amylase 31.5 1.1E+02 0.0023 37.4 6.7 56 71-127 524-588 (894)
190 PRK09997 hydroxypyruvate isome 31.4 59 0.0013 33.1 4.2 60 68-127 85-144 (258)
191 PRK13209 L-xylulose 5-phosphat 31.4 2.6E+02 0.0055 28.6 9.0 103 65-197 54-161 (283)
192 cd06563 GH20_chitobiase-like T 31.2 2E+02 0.0044 31.0 8.5 59 66-127 16-106 (357)
193 PF08924 DUF1906: Domain of un 30.9 1.7E+02 0.0036 27.3 6.8 91 66-176 36-127 (136)
194 COG1735 Php Predicted metal-de 30.9 1.9E+02 0.0041 31.0 7.7 74 71-175 51-124 (316)
195 PRK12331 oxaloacetate decarbox 30.5 1E+02 0.0023 34.6 6.2 56 60-127 88-143 (448)
196 PLN02877 alpha-amylase/limit d 30.2 1E+02 0.0022 38.1 6.4 21 107-127 466-486 (970)
197 COG5309 Exo-beta-1,3-glucanase 30.0 4.7E+02 0.01 27.7 10.2 119 66-232 61-179 (305)
198 PRK05265 pyridoxine 5'-phospha 29.8 75 0.0016 32.7 4.5 48 68-133 113-161 (239)
199 cd03789 GT1_LPS_heptosyltransf 28.2 77 0.0017 32.4 4.4 78 53-133 124-213 (279)
200 PRK06703 flavodoxin; Provision 28.0 2.7E+02 0.0058 25.8 7.7 103 48-175 46-148 (151)
201 TIGR02103 pullul_strch alpha-1 27.9 98 0.0021 37.9 5.8 21 107-127 404-424 (898)
202 PF00121 TIM: Triosephosphate 27.9 53 0.0012 33.8 3.1 64 59-128 62-125 (244)
203 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.8 1.5E+02 0.0032 30.9 6.5 49 65-125 88-136 (275)
204 PF04566 RNA_pol_Rpb2_4: RNA p 27.6 47 0.001 27.0 2.2 13 515-527 1-13 (63)
205 cd00544 CobU Adenosylcobinamid 27.5 3.6E+02 0.0079 25.9 8.7 47 163-217 101-147 (169)
206 COG2179 Predicted hydrolase of 26.9 1.3E+02 0.0027 29.6 5.2 45 73-126 19-68 (175)
207 PRK04302 triosephosphate isome 26.9 1.2E+02 0.0027 30.3 5.6 60 60-129 62-123 (223)
208 cd04883 ACT_AcuB C-terminal AC 26.5 2.3E+02 0.0051 22.2 6.2 57 67-124 12-69 (72)
209 PRK09432 metF 5,10-methylenete 26.4 1.5E+02 0.0033 31.4 6.3 87 73-175 168-265 (296)
210 KOG3698 Hyaluronoglucosaminida 26.3 2.4E+02 0.0052 32.7 7.9 72 49-128 12-95 (891)
211 PF01075 Glyco_transf_9: Glyco 26.2 44 0.00095 33.4 2.2 78 49-129 103-194 (247)
212 TIGR03234 OH-pyruv-isom hydrox 26.2 79 0.0017 31.9 4.0 59 68-127 84-143 (254)
213 PF14701 hDGE_amylase: glucano 25.9 2.2E+02 0.0048 31.9 7.6 104 66-175 20-143 (423)
214 COG1891 Uncharacterized protei 25.8 24 0.00051 34.7 0.1 65 52-126 115-186 (235)
215 cd07381 MPP_CapA CapA and rela 25.6 6.8E+02 0.015 25.0 11.1 126 71-225 67-210 (239)
216 cd07944 DRE_TIM_HOA_like 4-hyd 25.5 1.3E+02 0.0028 31.3 5.5 65 64-128 16-81 (266)
217 PTZ00372 endonuclease 4-like p 25.4 4.9E+02 0.011 29.1 10.2 90 71-192 144-239 (413)
218 KOG1412 Aspartate aminotransfe 25.4 1.4E+02 0.0031 32.1 5.7 48 66-122 131-178 (410)
219 PRK10422 lipopolysaccharide co 25.2 1.3E+02 0.0028 32.1 5.6 63 64-129 198-273 (352)
220 PF07755 DUF1611: Protein of u 25.2 50 0.0011 35.2 2.4 60 53-127 35-95 (301)
221 TIGR03079 CH4_NH3mon_ox_B meth 25.2 1.8E+02 0.004 31.8 6.5 35 513-549 88-125 (399)
222 COG3915 Uncharacterized protei 24.7 2.6E+02 0.0057 26.5 6.6 47 73-125 39-87 (155)
223 COG1523 PulA Type II secretory 24.5 1.2E+02 0.0025 36.2 5.4 55 73-127 205-285 (697)
224 PRK14040 oxaloacetate decarbox 24.3 1.3E+02 0.0028 35.1 5.8 53 60-124 89-141 (593)
225 PRK12595 bifunctional 3-deoxy- 24.2 3.4E+02 0.0073 29.7 8.6 84 36-127 104-189 (360)
226 PF01487 DHquinase_I: Type I 3 23.9 1.6E+02 0.0035 29.3 5.8 64 56-128 116-183 (224)
227 PLN02389 biotin synthase 23.7 1.1E+02 0.0023 33.8 4.6 53 69-124 176-230 (379)
228 KOG3625 Alpha amylase [Carbohy 23.6 67 0.0014 39.1 3.1 55 66-123 140-213 (1521)
229 TIGR00676 fadh2 5,10-methylene 23.5 3.2E+02 0.0069 28.4 8.0 107 53-175 125-246 (272)
230 TIGR03700 mena_SCO4494 putativ 23.4 59 0.0013 35.1 2.6 51 70-123 149-204 (351)
231 PRK10966 exonuclease subunit S 23.1 7.6E+02 0.016 27.3 11.3 84 53-149 42-135 (407)
232 PRK13962 bifunctional phosphog 23.0 1.2E+02 0.0026 35.8 5.1 74 49-128 449-522 (645)
233 TIGR01361 DAHP_synth_Bsub phos 22.8 2.2E+02 0.0047 29.6 6.6 83 36-127 11-96 (260)
234 cd04740 DHOD_1B_like Dihydroor 22.6 1.8E+02 0.0038 30.3 6.0 59 66-128 100-162 (296)
235 cd06594 GH31_glucosidase_YihQ 22.5 2.4E+02 0.0052 30.0 7.0 68 66-133 21-97 (317)
236 PF05763 DUF835: Protein of un 22.5 5.5E+02 0.012 24.0 8.6 105 99-224 1-113 (136)
237 cd00019 AP2Ec AP endonuclease 22.1 81 0.0018 32.4 3.2 57 68-128 85-144 (279)
238 cd07944 DRE_TIM_HOA_like 4-hyd 22.1 1.4E+02 0.003 31.0 4.9 45 71-127 85-129 (266)
239 PF13380 CoA_binding_2: CoA bi 22.0 1.5E+02 0.0033 26.6 4.7 44 65-124 63-106 (116)
240 COG2890 HemK Methylase of poly 22.0 2.2E+02 0.0048 29.8 6.5 113 65-223 142-255 (280)
241 PRK10964 ADP-heptose:LPS hepto 21.9 1.4E+02 0.003 31.3 5.0 77 50-129 177-264 (322)
242 cd06564 GH20_DspB_LnbB-like Gl 21.9 3.4E+02 0.0074 28.9 8.0 59 66-127 15-102 (326)
243 cd00537 MTHFR Methylenetetrahy 21.9 2.5E+02 0.0053 29.0 6.8 89 72-175 151-249 (274)
244 cd02848 Chitinase_N_term Chiti 21.7 3.8E+02 0.0082 24.3 6.9 45 507-554 45-89 (106)
245 PRK10076 pyruvate formate lyas 21.6 5.3E+02 0.011 25.9 8.8 125 67-225 53-209 (213)
246 cd02810 DHOD_DHPD_FMN Dihydroo 21.6 1.5E+02 0.0032 30.7 5.1 60 66-129 109-171 (289)
247 KOG0622 Ornithine decarboxylas 21.6 1.4E+02 0.003 33.3 4.8 63 65-128 190-253 (448)
248 TIGR00542 hxl6Piso_put hexulos 21.5 1.3E+02 0.0027 31.0 4.5 58 69-127 95-153 (279)
249 cd04886 ACT_ThrD-II-like C-ter 21.2 3.8E+02 0.0082 20.4 7.3 58 67-124 9-72 (73)
250 TIGR02201 heptsyl_trn_III lipo 21.1 1.4E+02 0.003 31.6 4.9 65 62-129 194-271 (344)
251 TIGR00559 pdxJ pyridoxine 5'-p 21.1 1.2E+02 0.0026 31.2 4.1 47 68-132 110-157 (237)
252 PF03102 NeuB: NeuB family; I 21.0 1.1E+02 0.0024 31.4 4.0 65 64-128 52-121 (241)
253 cd06568 GH20_SpHex_like A subg 20.8 1.8E+02 0.0039 31.3 5.6 59 66-127 16-95 (329)
254 cd02871 GH18_chitinase_D-like 20.8 4.4E+02 0.0095 27.9 8.5 87 107-222 60-146 (312)
255 COG1979 Uncharacterized oxidor 20.6 1.6E+02 0.0034 32.0 5.0 48 69-128 46-93 (384)
256 TIGR03128 RuMP_HxlA 3-hexulose 20.3 2.2E+02 0.0048 27.7 5.8 41 73-126 68-108 (206)
257 PF14307 Glyco_tran_WbsX: Glyc 20.3 1.2E+02 0.0027 32.6 4.3 44 42-87 150-194 (345)
258 PF09829 DUF2057: Uncharacteri 20.1 1.9E+02 0.004 28.3 5.2 41 510-557 7-47 (189)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.1e-158 Score=1338.35 Aligned_cols=585 Identities=81% Similarity=1.382 Sum_probs=545.9
Q ss_pred HHHHHHHHhhccc-cccccceEEEccceEEECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCc
Q 007390 19 VLMLVLLSFCSWE-ISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT 97 (605)
Q Consensus 19 ~~~~~~~~~~~~~-~~~~~~~v~~d~~~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~ 97 (605)
.|+|.|+.+.|.. +.-...+|++|+++|+|||||++|+||+|||||++|++|+|+|+||||+|+|||+||||||+|||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~ 88 (840)
T PLN03059 9 FLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 88 (840)
T ss_pred hhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCC
Confidence 3333333333333 444466899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhc
Q 007390 98 QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (605)
Q Consensus 98 ~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~ 177 (605)
||+|||+|++||++||++|+++||+|||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++|+++
T Consensus 89 ~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~ 168 (840)
T PLN03059 89 PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSE 168 (840)
T ss_pred CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHHHHhcCCCcceEEecCCCCCccccccCCCccccccccCCCC
Q 007390 178 KLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNY 257 (605)
Q Consensus 178 ~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 257 (605)
++++++||||||+|||||||++...++.+|++||+||+++++++|++|||+||++.++++++++||||.+|+.|.++++.
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~ 248 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDY 248 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCC
Confidence 99999999999999999999987777778999999999999999999999999998888889999999999999988888
Q ss_pred CCccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeecccCCcCCCCCCCC-cccccCCCCCCCCCCCCCC
Q 007390 258 KPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEYGLLN 336 (605)
Q Consensus 258 ~P~~~~E~~~Gwf~~wG~~~~~~~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~tSYDy~Api~E~G~~~ 336 (605)
+|+||||||+|||++||+++++|+++|+++.++++|++|+|++||||||||||||||+|+ +++|||||||||+|+|++|
T Consensus 249 ~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t 328 (840)
T PLN03059 249 KPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPR 328 (840)
T ss_pred CCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcc
Confidence 999999999999999999999999999999999999999998999999999999999999 7999999999999999998
Q ss_pred chhHHHHHHHHHHHHhhcCcccCCCCccccCCCcceeEEeecCCCceEEEEeecCCCceeEEEECCeeeecCCceEEecC
Q 007390 337 EPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLP 416 (605)
Q Consensus 337 ~pky~~lr~l~~~i~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~v~~~~~~~~~p~~sv~il~ 416 (605)
+|||.+||++|++++.|+++|+..+|....+|+++|+++|.... .|++|+.|++++.+++|+|+|++|.||||||||||
T Consensus 329 ~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilp 407 (840)
T PLN03059 329 EPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILP 407 (840)
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecc
Confidence 78999999999999999999998888888999999999999766 79999999999999999999999999999999999
Q ss_pred CCCceeeeeceecceeceeeeeccccccccccccccccCCCCCCCcccCchhhhhcCCCCCccEEEEEEEeecCCCcccc
Q 007390 417 DCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFL 496 (605)
Q Consensus 417 ~~~~~~f~t~~v~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~p~~~Eqlg~t~d~~GyvWYrt~v~l~~~~~~~ 496 (605)
||+++||||+++++|++.+..++....+.|++++|++.+.....+++...++||+++|+|.+||+||||+|.++.++...
T Consensus 408 d~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~ 487 (840)
T PLN03059 408 DCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFL 487 (840)
T ss_pred cccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCcccc
Confidence 99999999999999988876666666679999999854555556888889999999999999999999999987765444
Q ss_pred cCCCCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEeecCcccccccccccccceeccE
Q 007390 497 KNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPV 576 (605)
Q Consensus 497 ~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILven~Gr~NyG~~~e~~~kGI~g~V 576 (605)
+.+++++|++.+++|++||||||+++|+.++......++++.++.|+.|.|+|+|||++|||+|||++||++.|||.|+|
T Consensus 488 ~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V 567 (840)
T PLN03059 488 KTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPV 567 (840)
T ss_pred ccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccE
Confidence 56778999999999999999999999999998877889999888899999999999999999999999998999999999
Q ss_pred EEecCCCceeeCCCCCceeEeecccccc
Q 007390 577 TLKGLNEGTRDISKQKWTYKVCLSLDIL 604 (605)
Q Consensus 577 ~l~g~~~g~idLs~~~W~ykvgl~GE~~ 604 (605)
.|.+++++++||++.+|.|+++|.||.+
T Consensus 568 ~i~g~~~g~~dls~~~W~y~lgL~GE~~ 595 (840)
T PLN03059 568 TLKGLNEGTRDLSGWKWSYKIGLKGEAL 595 (840)
T ss_pred EEecccCCceecccCccccccCccceec
Confidence 9999888899999999999999999986
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-132 Score=1081.76 Aligned_cols=514 Identities=61% Similarity=1.079 Sum_probs=484.2
Q ss_pred cceEEEccceEEECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHH
Q 007390 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (605)
Q Consensus 36 ~~~v~~d~~~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~l 115 (605)
...|++|+++|.+||+|++++||+|||||++|++|+|+|+|+|++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc
Q 007390 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (605)
Q Consensus 116 a~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENE 195 (605)
|++.||+|+||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCccccCCcchHHHHHHHHHHHHhcCCCcceEEecCCCCCccccccCCCccc-cccc-cCCCCCCcccccccccccccc
Q 007390 196 FGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTEF 273 (605)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p~~~~~~~~g~~~-~~~~-~~~~~~P~~~~E~~~Gwf~~w 273 (605)
||.+...|++.++.|+.|-+.|+...+.++||+||.+.++|++++++|||++| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99988888888999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeeeeeecccCCcCCCCCCCCcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHhh
Q 007390 274 GSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLC 353 (605)
Q Consensus 274 G~~~~~~~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Api~E~G~~~~pky~~lr~l~~~i~~~ 353 (605)
|++++.|++||+++.+++|+++|+|++||||||||||||++||.+.+|||||||||| |..++|||+|+|.+|..++.|
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cCcccCCCCccccCCCcceeEEeecCCCceEEEEeecCCCceeEEEECCeeeecCCceEEecCCCCceeeeeceecceec
Q 007390 354 EPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSS 433 (605)
Q Consensus 354 ~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~v~~~~~~~~~p~~sv~il~~~~~~~f~t~~v~~~~~ 433 (605)
++.+..+++...++|+.++ .|.+|+.|++......+.|++..|.+|+|||+|||||++++|||+++.+|
T Consensus 333 ep~lv~gd~~~~kyg~~~~---------~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLRE---------ACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred CccccccCcccccccchhh---------HHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 9999999988877776554 49999999999999999999999999999999999999999999999544
Q ss_pred eeeeeccccccccccccccccCCCCCCCcccCchhhhhcCCCCCccEEEEEEEeecCCCcccccCCCCceEEEe-ccCCe
Q 007390 434 QKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIW-SAGHA 512 (605)
Q Consensus 434 ~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~p~~~Eqlg~t~d~~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~-~i~D~ 512 (605)
|..+.||++ +|..++ ..|++.|++.++-+..+ ...|++. +++|+
T Consensus 402 ------------~~~~~e~~~-------------~~~~~~---~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~~ 446 (649)
T KOG0496|consen 402 ------------WISFTEPIP-------------SEAVGQ---SFGGLLEQTNLTKDKSD-------TTSLKIPLSLGHA 446 (649)
T ss_pred ------------cccccCCCc-------------cccccC---cceEEEEEEeeccccCC-------CceEeecccccce
Confidence 666777751 444454 67799999987654332 3568888 99999
Q ss_pred EEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEeecCcccccccccccccceeccEEEecCCCceeeCCCCC
Q 007390 513 LQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQK 592 (605)
Q Consensus 513 ~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILven~Gr~NyG~~~e~~~kGI~g~V~l~g~~~g~idLs~~~ 592 (605)
+||||||+++|+.++......+.+..++.|+.|.|+|+||||++||+||| +|+++.+||.|+|.|.++ +||++.+
T Consensus 447 ~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~ 521 (649)
T KOG0496|consen 447 LHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTK 521 (649)
T ss_pred EEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccceee
Confidence 99999999999999988778888888889999999999999999999999 999999999999999774 8999889
Q ss_pred ceeEeecccccc
Q 007390 593 WTYKVCLSLDIL 604 (605)
Q Consensus 593 W~ykvgl~GE~~ 604 (605)
|.|++++.||.+
T Consensus 522 w~~~~gl~ge~~ 533 (649)
T KOG0496|consen 522 WPYKVGLKGEKL 533 (649)
T ss_pred cceecccccchh
Confidence 999999999976
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=5.1e-91 Score=732.11 Aligned_cols=296 Identities=43% Similarity=0.793 Sum_probs=230.5
Q ss_pred eEEECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE
Q 007390 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 45 ~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
+|+|||||++|+||||||+|+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCC
Q 007390 125 LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG 204 (605)
Q Consensus 125 lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~ 204 (605)
|||||||||||++||+|.||.+++++++|++||.|++++++|+++|+++++ ++|+++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999953
Q ss_pred cchHHHHHHHHHHHHhcCCC-cceEEecCC--------CCCccccccCCCccccc--------cccCCCCCCcccccccc
Q 007390 205 APGKAYAKWAAQMAVGLNTG-VPWVMCKQD--------DAPDPVINTCNGFYCEK--------FVPNQNYKPKMWTEAWT 267 (605)
Q Consensus 205 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~--------~~p~~~~~~~~g~~~~~--------~~~~~~~~P~~~~E~~~ 267 (605)
.++++|++.|++++++.+++ ++.++++.. +.|+..+.+++++.|.. ....+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 35899999999999999998 666776642 22333344455555522 13556889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeecccCCcCCCCCCCC-c----ccccCCCCCCCCCCCCCCchhHHH
Q 007390 268 GWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-F----VATSYDYDAPIDEYGLLNEPKWGH 342 (605)
Q Consensus 268 Gwf~~wG~~~~~~~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~----~~tSYDy~Api~E~G~~~~pky~~ 342 (605)
|||++||++++.+++++++..+++++++| +++||||||||||||+++|+ . ++|||||+|||+|+|++| |||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 99999999999999999999999999999 55899999999999999988 3 259999999999999997 99999
Q ss_pred HHHHHHH
Q 007390 343 LRDLHKA 349 (605)
Q Consensus 343 lr~l~~~ 349 (605)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-36 Score=338.76 Aligned_cols=289 Identities=22% Similarity=0.302 Sum_probs=212.2
Q ss_pred EEEccceEEECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCcCCeeeeccchhHHHHHHHHH
Q 007390 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (605)
Q Consensus 39 v~~d~~~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~t-yv~Wn~hEp~~G~~df~G~~dl~~fl~la~ 117 (605)
|.+++..+++||+|++++||++||+|+|++.|.++|+|||++|+|+|++ |+.||.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3578899999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCcEEEeccCc-eeccccCCCCCCeEecccCCccc---------ccCChhHHHHHHHHHHHHHHHhhhccccccCCCcE
Q 007390 118 QAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVPGIEF---------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (605)
Q Consensus 118 ~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p~~~~---------R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpI 187 (605)
+.||+||||||| ..|.+|..+++|+||..++.-.. ..+++-|++++++.+++|.+++ +.+|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 99999999999999998664322 2456778888888544444442 5789999
Q ss_pred EEeccccccCCccccCCcchHHHHHHHHHHHHhc-CCCcceEEecCC-CCCc-cccccCC-----Cccc--cccccCCCC
Q 007390 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQD-DAPD-PVINTCN-----GFYC--EKFVPNQNY 257 (605)
Q Consensus 188 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~~~~~-~~p~-~~~~~~~-----g~~~--~~~~~~~~~ 257 (605)
|+||++||||++.+.++.|.+.|..||++.+-.+ ..+-+|-+.--+ +..+ ..|.+.+ +... -.|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999854445667899999999887322 122333211100 0000 0011111 1100 012212222
Q ss_pred C----Cccccccccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCeeeeeecccCCcCCC------CCCCC--------
Q 007390 258 K----PKMWTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG-------- 317 (605)
Q Consensus 258 ~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~-------- 317 (605)
+ +....|.|-+|| +.|..+.-... .+--++.+...|..... -||||+|+|++|+ +.+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 566788888899 76666544333 22233445555555544 6999999999999 66654
Q ss_pred ---cccccCCCCCCCCCCCCCC
Q 007390 318 ---FVATSYDYDAPIDEYGLLN 336 (605)
Q Consensus 318 ---~~~tSYDy~Api~E~G~~~ 336 (605)
...|+|++.+.+.+.|..+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 1579999999999999944
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=8.3e-22 Score=212.13 Aligned_cols=262 Identities=20% Similarity=0.272 Sum_probs=160.4
Q ss_pred ecCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCC
Q 007390 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG 138 (605)
Q Consensus 60 iHy~r~~~~~W~~~l~k~Ka~G~NtV~t-yv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G 138 (605)
+++..++++.|+++|++||++|||+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. ..
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4556789999999999999999999996 56799999999999999 899999999999999999975 56
Q ss_pred CCCeEecc-cCCccc----------------ccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccc
Q 007390 139 GFPVWLKY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 201 (605)
Q Consensus 139 G~P~WL~~-~p~~~~----------------R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~ 201 (605)
..|.||.+ .|++.. ..++|.|++++++++++|+++++++ +.||++||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCc-
Confidence 78999975 565422 2457899999999999999888854 4799999999998742
Q ss_pred cCC-cchHHHHHHHHHHHHhc-------C-------------CCcceEEecCC---------------------------
Q 007390 202 DIG-APGKAYAKWAAQMAVGL-------N-------------TGVPWVMCKQD--------------------------- 233 (605)
Q Consensus 202 ~~~-~~~~~y~~~l~~~~~~~-------g-------------~~vP~~~~~~~--------------------------- 233 (605)
+|+ .+.++|.+||++++... | +..|..+....
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244 46678999999888421 1 11222111000
Q ss_pred --CCCccccccCC--C---------------------cccc--------c---------c-ccCCCCCCccccccccccc
Q 007390 234 --DAPDPVINTCN--G---------------------FYCE--------K---------F-VPNQNYKPKMWTEAWTGWF 270 (605)
Q Consensus 234 --~~p~~~~~~~~--g---------------------~~~~--------~---------~-~~~~~~~P~~~~E~~~Gwf 270 (605)
..|+..+ +.| + +|.. . + ....+.+|.+++|..+| -
T Consensus 223 r~~~p~~~v-t~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~ 300 (374)
T PF02449_consen 223 REYDPDHPV-TTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-P 300 (374)
T ss_dssp HHHSTT-EE-E-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--
T ss_pred HHhCCCceE-EeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-C
Confidence 0011000 000 0 0100 0 0 01247889999999999 5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeecccCCcCCCCCCCCcccccCCCCCCCCCCC-CCCchhHHHHHHHHHH
Q 007390 271 TEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLHKA 349 (605)
Q Consensus 271 ~~wG~~~~~~~~~d~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Api~E~G-~~~~pky~~lr~l~~~ 349 (605)
..|+.......+..+....-..++.|+..+.|+-+ ..-.+|.-.. ..+.|+-+| .+ +++|.+++++.+.
T Consensus 301 ~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 301 VNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp -SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 56766555556677776666788999998888866 2223332111 236788899 66 4899999999887
Q ss_pred HHh
Q 007390 350 IKL 352 (605)
Q Consensus 350 i~~ 352 (605)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 753
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.49 E-value=7e-13 Score=138.59 Aligned_cols=192 Identities=19% Similarity=0.255 Sum_probs=126.2
Q ss_pred EEEccceEEECCEEEEEEEEEecCCC------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHH
Q 007390 39 VSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (605)
Q Consensus 39 v~~d~~~~~~dG~p~~l~sG~iHy~r------~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~f 112 (605)
|.+.++.|+|||||++|.+...|.+. .+++.|+.+|++||++|+|+|++ .++.+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 56789999999999999999999652 57899999999999999999999 3333333 89
Q ss_pred HHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEecc
Q 007390 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (605)
Q Consensus 113 l~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QI 192 (605)
+++|.++||.|+..+.=.-++.|..-|. ......+|.+.+.+.+-+++++++.++| ++||+|-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchheeec
Confidence 9999999999997762111233332121 1245678899888888888877777654 58999999
Q ss_pred ccccCCccccCCcchHHHHHHHHHHHHhcCCCcceEEecCCCC--Ccc-ccccCCCccc-----ccc----cc--CCCCC
Q 007390 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDA--PDP-VINTCNGFYC-----EKF----VP--NQNYK 258 (605)
Q Consensus 193 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~--p~~-~~~~~~g~~~-----~~~----~~--~~~~~ 258 (605)
-||-. ...+++.|.+++++.+.+.|+........ .+. ..+...+.|. +.+ .. ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99982 46688899999999999998866554211 111 1111111111 111 11 35789
Q ss_pred Ccccccccccccc
Q 007390 259 PKMWTEAWTGWFT 271 (605)
Q Consensus 259 P~~~~E~~~Gwf~ 271 (605)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999655444
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.38 E-value=6.3e-11 Score=135.55 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=112.6
Q ss_pred ceEEEccceEEECCEEEEEEEEEecCCC------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHH
Q 007390 37 ASVSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (605)
Q Consensus 37 ~~v~~d~~~~~~dG~p~~l~sG~iHy~r------~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~ 110 (605)
.+|++++..|+|||+|+++.+.+.|... .+++.|..+|+.||++|+|+|++ . |-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----s-h~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----S-HYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----c-cCCCC-----------H
Confidence 3578888999999999999999998542 57788999999999999999999 3 44422 3
Q ss_pred HHHHHHHHcCcEEEeccCceeccccCCCCCCeEec--------ccCCcccccCChhHHHHHHHHHHHHHHHhhhcccccc
Q 007390 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK--------YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 182 (605)
Q Consensus 111 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~--------~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~ 182 (605)
+|+++|.++||+|+.... . + |+..|.. ..+....-..+|.+.++..+-+++++++. .
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~-------~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-V------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARD-------K 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-c------cccccccccccccccccccccccccchhHHHHHHHHHHHHHHhc-------c
Confidence 899999999999998753 1 1 1111111 01111112334566665555555555444 4
Q ss_pred CCCcEEEeccccccCCccccCCcchHHHHHHHHHHHHhcCCCcceEEec
Q 007390 183 QGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (605)
Q Consensus 183 ~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (605)
|+.+||||-|-||.... ......+.+.|.+.+++++.+.|+..+.
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 66799999999997531 1224567888999999999999987654
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.24 E-value=1.6e-10 Score=138.91 Aligned_cols=258 Identities=18% Similarity=0.190 Sum_probs=151.7
Q ss_pred eEEEccceEEECCEEEEEEEEEecCC-----C-CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHH
Q 007390 38 SVSYDHKAVIINGQKRILISGSIHYP-----R-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (605)
Q Consensus 38 ~v~~d~~~~~~dG~p~~l~sG~iHy~-----r-~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~ 111 (605)
+|+++++.|+|||+|+++.+...|.. | ++++.|+.+|+.||++|+|+|++ .+..+.| +
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------R 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 35677889999999999999998843 2 57889999999999999999999 3444445 8
Q ss_pred HHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 007390 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (605)
Q Consensus 112 fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (605)
|+++|.++||+|+-.. |..|..|...+ +...-+++|.+.++..+=+++++.+. +|+.+||||-
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~~~~~~mV~Rd-------rNHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYVDRIVRHIHAQ-------KNHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHHHHHHHHHHhC-------CCCCEEEEEE
Confidence 9999999999999886 33332221101 01112456666554333333343333 5677999999
Q ss_pred cccccCCccccCCcchHHHHHHHHHHHHhcCCCcceEEecCCCCCccccccCCCccc-----cccccCCCCCCccccccc
Q 007390 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-----EKFVPNQNYKPKMWTEAW 266 (605)
Q Consensus 192 IENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p~~~~~~~~g~~~-----~~~~~~~~~~P~~~~E~~ 266 (605)
+.||-+. + . ..+.+.+.+++++.+.|+........ . +.+...-.|. +.+....+++|++.+|+=
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~~~~~~~~-~-~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLVHYEEDRDA-E-VVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceEEeCCCcCc-c-ccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999763 1 2 23677888889998888754322111 1 1121111121 223333457999999983
Q ss_pred cccccccCCCCCCCCHHHHHHHHHH--HHHcCCee---e-----------eeecccCCcCCCCCCCCcccccCCCCCCCC
Q 007390 267 TGWFTEFGSAVPTRPAEDLVFSVAR--FIQSGGSF---I-----------NYYMYHGGTNFGRTSGGFVATSYDYDAPID 330 (605)
Q Consensus 267 ~Gwf~~wG~~~~~~~~~d~~~~~~~--~l~~g~s~---~-----------n~YM~hGGTNfG~~~g~~~~tSYDy~Api~ 330 (605)
.. +|.. + ...++.-..+.+ .+ .|+-+ + .-|+.+||- ||-+. -..++--+.-++
T Consensus 515 ha----mgn~-~-g~~~~yw~~~~~~p~l-~GgfiW~~~D~~~~~~~~~G~~~~~ygGd-~g~~p---~~~~f~~~Glv~ 583 (1021)
T PRK10340 515 HA----MGNG-P-GGLTEYQNVFYKHDCI-QGHYVWEWCDHGIQAQDDNGNVWYKYGGD-YGDYP---NNYNFCIDGLIY 583 (1021)
T ss_pred hc----cCCC-C-CCHHHHHHHHHhCCce-eEEeeeecCcccccccCCCCCEEEEECCC-CCCCC---CCcCcccceeEC
Confidence 21 2210 0 012232221111 00 01100 0 012233432 43221 112333347788
Q ss_pred CCCCCCchhHHHHHHHHHHHH
Q 007390 331 EYGLLNEPKWGHLRDLHKAIK 351 (605)
Q Consensus 331 E~G~~~~pky~~lr~l~~~i~ 351 (605)
.++.++ |.+.++|.+.+-++
T Consensus 584 ~dr~p~-p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 584 PDQTPG-PGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCCCC-hhHHHHHHhcceEE
Confidence 999996 99999999877553
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.18 E-value=4.2e-10 Score=135.24 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=106.9
Q ss_pred eEEEccceEEECCEEEEEEEEEecCC------CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHH
Q 007390 38 SVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (605)
Q Consensus 38 ~v~~d~~~~~~dG~p~~l~sG~iHy~------r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~ 111 (605)
+|++++..|+|||+|+++.+...|.. +.+++.++.+|+.||++|+|+|++ .++.+.| +
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------L 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 35677788999999999999999833 368899999999999999999999 4554455 8
Q ss_pred HHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 007390 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (605)
Q Consensus 112 fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (605)
|+++|.++||+|+-...=..|+- .|.. .-.+||.|.+++.+ ++.+++++ .+|+.+||||-
T Consensus 399 fydlcDe~GilV~dE~~~e~hg~-----~~~~--------~~~~dp~~~~~~~~---~~~~mV~R----drNHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEANIETHGM-----VPMN--------RLSDDPRWLPAMSE---RVTRMVQR----DRNHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecCccccCC-----cccc--------CCCCCHHHHHHHHH---HHHHHHHh----CCCCCEEEEEe
Confidence 99999999999998853111111 1110 01356777665544 34444442 25677999999
Q ss_pred cccccCCccccCCcchHHHHHHHHHHHHhcCCCcceEEec
Q 007390 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (605)
Q Consensus 192 IENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (605)
+-||-+. +. ..+.+.+.+++++.+.|+....
T Consensus 459 lgNE~~~-----g~----~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 459 LGNESGH-----GA----NHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred CccCCCc-----Ch----hHHHHHHHHHhhCCCCcEEECC
Confidence 9999763 11 2456677788888889887654
No 10
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=99.06 E-value=7.5e-10 Score=105.60 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=76.4
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCc-cEEEEEE
Q 007390 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLS 553 (605)
Q Consensus 475 ~d~~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~-N~L~ILv 553 (605)
....|+.||||+|++|++. +++...|.++++++.+.|||||++||++.+...+..+.++ -.|+.|+ |+|+|+|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt--~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDIT--DYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECG--GGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeCh--hhccCCCCEEEEEEE
Confidence 5578999999999998765 6788999999999999999999999999887655455554 4589998 9999999
Q ss_pred eecCccccccccc-ccccceeccEEEe
Q 007390 554 TSVGLPNVGTHFE-KWNAGVLGPVTLK 579 (605)
Q Consensus 554 en~Gr~NyG~~~e-~~~kGI~g~V~l~ 579 (605)
.+.....+-+.++ ...+||.++|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 9765333211122 3578999999884
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=6.3e-09 Score=121.38 Aligned_cols=121 Identities=20% Similarity=0.284 Sum_probs=95.6
Q ss_pred cceEEEccceEEECCEEEEEEEEEecCC-----CC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhH
Q 007390 36 KASVSYDHKAVIINGQKRILISGSIHYP-----RS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDL 109 (605)
Q Consensus 36 ~~~v~~d~~~~~~dG~p~~l~sG~iHy~-----r~-~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl 109 (605)
=.+|+++...|.|||||+++-+..-|.+ |. ..+.-+++|++||++|+|+|+|- |=|..
T Consensus 283 fR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~----------- 346 (808)
T COG3250 283 FRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS----------- 346 (808)
T ss_pred cEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------
Confidence 3467888899999999999999999966 33 34449999999999999999993 55543
Q ss_pred HHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEE
Q 007390 110 VRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIIL 189 (605)
Q Consensus 110 ~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~ 189 (605)
..|+++|.++||+||-.+ ..||.. .| +|+.|++.+..=.++++++.+ |+++|||
T Consensus 347 ~~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIii 400 (808)
T COG3250 347 EEFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDR-------NHPSIII 400 (808)
T ss_pred HHHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEEE
Confidence 489999999999999986 333432 12 778888887776666666665 4568999
Q ss_pred eccccccCC
Q 007390 190 SQIENEFGP 198 (605)
Q Consensus 190 ~QIENEyg~ 198 (605)
|-+.||-|.
T Consensus 401 Ws~gNE~~~ 409 (808)
T COG3250 401 WSLGNESGH 409 (808)
T ss_pred EeccccccC
Confidence 999999874
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.85 E-value=3.8e-08 Score=100.52 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=108.9
Q ss_pred CCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC-CcCCe-eeeccchhHHHHHHHHHHcCcEEEec
Q 007390 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 49 dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hE-p~~G~-~df~G~~dl~~fl~la~~~GL~Vilr 126 (605)
+|+++.+.+-+.|+.. +..-++.++.||++|+|+||+.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999432 22788999999999999999999995444 67764 66566679999999999999999987
Q ss_pred cCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCcccc--CC
Q 007390 127 IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--IG 204 (605)
Q Consensus 127 ~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~--~~ 204 (605)
+ ++ .|.|...... -...+...+....+++.|+++++ +..+|++++|=||....... ..
T Consensus 82 ~----h~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 L----HN------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp E----EE------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred e----cc------Cccccccccc---cccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 5 21 1666332111 11223334444555666666665 33479999999998764211 00
Q ss_pred ----cchHHHHHHHHHHHHhcCCCcceEEec
Q 007390 205 ----APGKAYAKWAAQMAVGLNTGVPWVMCK 231 (605)
Q Consensus 205 ----~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (605)
..-..+.+.+.+..|+.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 011345566666678888887766543
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.67 E-value=1.2e-07 Score=85.47 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=58.7
Q ss_pred hhcCCCCCccEEEEEEEeecCCCcccccCCCCce-EEEe-ccCCeEEEEECCEEEEEEE-cccCCCeeEEecceecCCCc
Q 007390 470 QVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGTVY-GSLENPKLTFSKNVKLRPGV 546 (605)
Q Consensus 470 qlg~t~d~~GyvWYrt~v~l~~~~~~~~~g~~~~-L~l~-~i~D~~~VfVNG~~VGt~~-~~~~~r~~~l~~~i~Lk~G~ 546 (605)
..+.+++..|++|||++|+....+ .... |.+. +..++++|||||+++|+.. .......|.+|.++ |+.+.
T Consensus 26 ~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~~n 98 (111)
T PF13364_consen 26 YASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKYGN 98 (111)
T ss_dssp CCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTTCE
T ss_pred ccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecCCC
Confidence 344556799999999999643222 1123 3333 5689999999999999987 44445678999876 78888
Q ss_pred cEEEEEEeecC
Q 007390 547 NKISLLSTSVG 557 (605)
Q Consensus 547 N~L~ILven~G 557 (605)
|+|+||+.+||
T Consensus 99 ~v~~vl~~~~g 109 (111)
T PF13364_consen 99 NVLVVLWDNMG 109 (111)
T ss_dssp EEEEEEEE-ST
T ss_pred EEEEEEEeCCC
Confidence 89999999998
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.45 E-value=9e-07 Score=101.60 Aligned_cols=100 Identities=23% Similarity=0.242 Sum_probs=75.2
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCcc-EEEEEE
Q 007390 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVN-KISLLS 553 (605)
Q Consensus 475 ~d~~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N-~L~ILv 553 (605)
++..|..|||++|++|+.. .+++..|+++.++..+.|||||++||.+.+...+ |.++..-.|+.|+| +|+|+|
T Consensus 61 ~~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~--f~~DIT~~l~~G~~n~L~V~v 134 (604)
T PRK10150 61 RNYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTP--FEADITPYVYAGKSVRITVCV 134 (604)
T ss_pred cCCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCccc--eEEeCchhccCCCceEEEEEE
Confidence 4578999999999998765 6888999999999999999999999999887655 44444435788865 999999
Q ss_pred eecCcc---ccccc-------------cc-ccccceeccEEEec
Q 007390 554 TSVGLP---NVGTH-------------FE-KWNAGVLGPVTLKG 580 (605)
Q Consensus 554 en~Gr~---NyG~~-------------~e-~~~kGI~g~V~l~g 580 (605)
.|.-+. ..|.. .+ ....||.++|.|..
T Consensus 135 ~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~ 178 (604)
T PRK10150 135 NNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYT 178 (604)
T ss_pred ecCCCcccCCCCccccCCccccccccccccccccCCCceEEEEE
Confidence 764211 01110 11 24679999999864
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.22 E-value=6.6e-06 Score=99.52 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=71.3
Q ss_pred ccEEEEEEEeecCCCcccccCCC-CceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEeec
Q 007390 478 SDYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (605)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~g~-~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILven~ 556 (605)
.+..|||++|++|++. .++ +..|+++.+...+.|||||++||.+.+...+ |.+++.-.|+.|+|+|+|+|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~p--fefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLP--AEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCCce--EEEEChhhhcCCccEEEEEEEec
Confidence 5789999999999765 454 7899999999999999999999998876655 44444435789999999999542
Q ss_pred Cccccccccc----ccccceeccEEEec
Q 007390 557 GLPNVGTHFE----KWNAGVLGPVTLKG 580 (605)
Q Consensus 557 Gr~NyG~~~e----~~~kGI~g~V~l~g 580 (605)
.. |.+++ .+..||.++|.|..
T Consensus 193 sd---gs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 193 SD---GSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred CC---CCccccCCceeeccccceEEEEE
Confidence 21 12222 13569999988854
No 16
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.18 E-value=5.7e-06 Score=100.13 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=74.0
Q ss_pred ccEEEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEeecC
Q 007390 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (605)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILven~G 557 (605)
.+..|||++|++|++. ++++..|+++.+...+.|||||++||.+.+...+..|.++. .|+.|+|+|+|+|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT~--~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISA--MVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCCccEEEEcch--hhCCCccEEEEEEEecC
Confidence 4678999999999865 78889999999999999999999999988776665555543 47899999999997543
Q ss_pred ccccccccc----ccccceeccEEEec
Q 007390 558 LPNVGTHFE----KWNAGVLGPVTLKG 580 (605)
Q Consensus 558 r~NyG~~~e----~~~kGI~g~V~l~g 580 (605)
- |.+++ ....||.++|.|..
T Consensus 182 d---~s~le~qd~w~~sGI~R~V~L~~ 205 (1021)
T PRK10340 182 D---STYLEDQDMWWLAGIFRDVYLVG 205 (1021)
T ss_pred C---CCccccCCccccccccceEEEEE
Confidence 1 22222 13479999988865
No 17
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.18 E-value=2.4e-05 Score=81.84 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=88.4
Q ss_pred ccccceEEEccceEE--ECCEEEEEEEEEecCCC-----------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCC
Q 007390 33 SFVKASVSYDHKAVI--INGQKRILISGSIHYPR-----------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG 99 (605)
Q Consensus 33 ~~~~~~v~~d~~~~~--~dG~p~~l~sG~iHy~r-----------~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G 99 (605)
++.-..|++.++.|+ -+|++|+|.+-.+.+.. ..++.|+.++..||++|+|||++|- ..|..
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~~- 79 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPSK- 79 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS-
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCCC-
Confidence 344556788888888 79999999987766433 3568899999999999999999973 23333
Q ss_pred eeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCCh--hHHHHHHHHHHHHHHHhhhc
Q 007390 100 NYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAE 177 (605)
Q Consensus 100 ~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~--~y~~~~~~~~~~l~~~i~~~ 177 (605)
|-++++++.++.|+|||+-.+. |...+-..+| .|-...-.-+.++++.++++
T Consensus 80 --------nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 80 --------NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp ----------HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred --------CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 7789999999999999998752 2222333445 45444333445566777744
Q ss_pred cccccCCCcEEEeccccccCCccccCC--cchHHHHHHHHHHHHhcCC-Ccce
Q 007390 178 KLFQTQGGPIILSQIENEFGPVEWDIG--APGKAYAKWAAQMAVGLNT-GVPW 227 (605)
Q Consensus 178 ~~~~~~gGpII~~QIENEyg~~~~~~~--~~~~~y~~~l~~~~~~~g~-~vP~ 227 (605)
.++++.=+.||.-.-..... +.-|+..+-+|+-.++.+. .+|+
T Consensus 134 -------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 -------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 37999999999854221101 1235555666666666665 4565
No 18
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.10 E-value=8.7e-06 Score=83.58 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=88.8
Q ss_pred CCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHH
Q 007390 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (605)
Q Consensus 91 Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l 170 (605)
|...||+||+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++.+|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 9999999999999998 332222 433 6899987533 345678888898888
Q ss_pred HHHhhhccccccCCCcEEEeccccccCCcc-------ccCCcchHHHHHHHHHHHHhcCCCcceEEecC
Q 007390 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVE-------WDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (605)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 232 (605)
+.+++ |.|..|+|=||--+.. ..+...+..|+...-+.+++.+.++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88876 4588999999953221 00122345789888899999999999988764
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=97.80 E-value=5.1e-05 Score=83.79 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
..|+++|+.||++|+|++++-|.|+..+|. +|++|.+|-...+++|+.|.++||.+|+-.= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 358899999999999999999999999999 7899998989999999999999999876541 2348999986
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHhhh
Q 007390 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (605)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 176 (605)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3466667777777777777763
No 20
>PLN02705 beta-amylase
Probab=97.73 E-value=8.7e-05 Score=82.88 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=63.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCC----
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (605)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++ ||.+ --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4566788999999999999999999999998 699999995 557899999999995 4554 33443 222
Q ss_pred -CCCeEecc----cCCcc
Q 007390 139 -GFPVWLKY----VPGIE 151 (605)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (605)
-||.|+.+ +|+|-
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999986 46663
No 21
>PLN02801 beta-amylase
Probab=97.69 E-value=0.00012 Score=80.77 Aligned_cols=80 Identities=25% Similarity=0.462 Sum_probs=63.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCC----
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (605)
.++.-+..|+++|++|++.|.+.|.|...|. .|++|||+| ..++.++|+++||++ |+.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4667889999999999999999999999997 699999995 567899999999995 4554 23332 111
Q ss_pred -CCCeEecc----cCCcc
Q 007390 139 -GFPVWLKY----VPGIE 151 (605)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (605)
-||.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999985 56663
No 22
>PLN00197 beta-amylase; Provisional
Probab=97.68 E-value=0.00012 Score=81.10 Aligned_cols=80 Identities=23% Similarity=0.454 Sum_probs=63.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCC----
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (605)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++ |+.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4667889999999999999999999999998 899999995 557899999999995 4554 23433 112
Q ss_pred -CCCeEecc----cCCcc
Q 007390 139 -GFPVWLKY----VPGIE 151 (605)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (605)
-||.|+.+ +|+|-
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999986 57764
No 23
>PLN02905 beta-amylase
Probab=97.65 E-value=0.00014 Score=81.45 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=62.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCC----
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (605)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++ |+.+ --|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455778999999999999999999999998 799999995 567899999999995 4554 33433 112
Q ss_pred -CCCeEecc----cCCcc
Q 007390 139 -GFPVWLKY----VPGIE 151 (605)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (605)
-||.|+.+ +|+|.
T Consensus 358 IPLP~WV~e~g~~nPDif 375 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIF 375 (702)
T ss_pred ccCCHHHHHhhhcCCCce
Confidence 38999986 57664
No 24
>PLN02161 beta-amylase
Probab=97.62 E-value=0.00018 Score=79.29 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=63.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCC----
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (605)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..++.++++++||++ |+.+ --|+- +-|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~ 188 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGG 188 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccC
Confidence 3455778999999999999999999999998 899999994 567899999999995 4544 33332 112
Q ss_pred -CCCeEecc----cCCccc
Q 007390 139 -GFPVWLKY----VPGIEF 152 (605)
Q Consensus 139 -G~P~WL~~----~p~~~~ 152 (605)
-||.|+.+ +|+|.+
T Consensus 189 IpLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYY 207 (531)
T ss_pred ccCCHHHHhhhccCCCceE
Confidence 28999986 577643
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.62 E-value=0.00026 Score=74.26 Aligned_cols=224 Identities=20% Similarity=0.300 Sum_probs=110.2
Q ss_pred cceEE-ECCEEEEEEEEEecCC---CCCcccHHHHHHHHHHCCCCEEEEcee--CCCC-C-------C----cCCeeeec
Q 007390 43 HKAVI-INGQKRILISGSIHYP---RSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGH-E-------P----TQGNYYFQ 104 (605)
Q Consensus 43 ~~~~~-~dG~p~~l~sG~iHy~---r~~~~~W~~~l~k~Ka~G~NtV~tyv~--Wn~h-E-------p----~~G~~df~ 104 (605)
++.|. -||+||+.++ .-.+. |...+.|+.-|+..|+-|||+|++=++ |.-+ . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 44443 678899999999999999999999876 4322 1 1 12236776
Q ss_pred cc-----hhHHHHHHHHHHcCcEEEecc---CceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhh
Q 007390 105 DR-----YDLVRFIKLVQQAGLYVHLRI---GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (605)
Q Consensus 105 G~-----~dl~~fl~la~~~GL~Vilr~---GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 176 (605)
.- ..|++.|+.|.+.||.+.|-| +||.-+-|-.| | +.| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 589999999999999975432 34444445443 1 111 136688999999999995
Q ss_pred ccccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHHHHhcCCCcceEE-ecCC-CCC-----cccccc---CCCc
Q 007390 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVM-CKQD-DAP-----DPVINT---CNGF 246 (605)
Q Consensus 177 ~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~-~~~~-~~p-----~~~~~~---~~g~ 246 (605)
.+ +|| |=|-||+ . ......++.+.+.+..++.+..-+... ..+. ..+ .+-++. .+|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 43 354 7799999 1 123467777778887777665443322 1111 111 111111 1121
Q ss_pred cc---c-------ccc-cCCCCCCcccccc-cccccc-ccCCCCCCCCHHHHHHHHHHHHHcCC
Q 007390 247 YC---E-------KFV-PNQNYKPKMWTEA-WTGWFT-EFGSAVPTRPAEDLVFSVARFIQSGG 297 (605)
Q Consensus 247 ~~---~-------~~~-~~~~~~P~~~~E~-~~Gwf~-~wG~~~~~~~~~d~~~~~~~~l~~g~ 297 (605)
.. + ... ...|.+|++..|- +.|--. .|+ .....+++|+....=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~-~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWG-YNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS--TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCc-ccCCCCHHHHHHHHHHHHhcCC
Confidence 11 1 111 4568899999883 233222 233 2334577787755444455565
No 26
>PLN02803 beta-amylase
Probab=97.59 E-value=0.0002 Score=79.26 Aligned_cols=80 Identities=19% Similarity=0.443 Sum_probs=62.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCC----
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (605)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++ |+.+ --|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3456788999999999999999999999998 599999995 557899999999995 4554 23433 112
Q ss_pred -CCCeEecc----cCCcc
Q 007390 139 -GFPVWLKY----VPGIE 151 (605)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (605)
-||.|+.+ +|+|-
T Consensus 179 IpLP~WV~e~~~~~pDi~ 196 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLV 196 (548)
T ss_pred ccCCHHHHHhhhcCCCce
Confidence 28999986 57764
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.37 E-value=0.00018 Score=77.75 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeccCceecc----ccCCCCCCeE
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCA----EWNYGGFPVW 143 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~a----Ew~~GG~P~W 143 (605)
.-+..|+++|++|++.|.+.|.|...|.. |++|||+ -..++.++|++.||++.+-..=--|+ ..-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45778999999999999999999999997 9999999 56688999999999965422112232 1111238999
Q ss_pred ecc---cCCccc--cc------------CChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEecc
Q 007390 144 LKY---VPGIEF--RT------------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (605)
Q Consensus 144 L~~---~p~~~~--R~------------~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QI 192 (605)
+.+ ..+|.+ |+ .... ++.-+.|++.....++ ++. +.|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 124422 11 1122 5555666666666666 432 67888887
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.05 E-value=0.00053 Score=76.37 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEec
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~--~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (605)
..|+++|+.||++|+|+.++-|.|+..+|. +|++|-+|..-.+++|+.+.++||..|+-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999976553 2556999998
Q ss_pred ccCCcccccCChhHHHHHHHHHHHHHHHhhh
Q 007390 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (605)
Q Consensus 146 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 176 (605)
+.-+- .++...+...+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74333 3466667777777777777763
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.95 E-value=0.0011 Score=70.48 Aligned_cols=158 Identities=15% Similarity=0.212 Sum_probs=109.0
Q ss_pred EEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEc--eeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceec
Q 007390 55 LISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 55 l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~ty--v~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
.++.+++..+...+. ..+.+-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|--.+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888877654442 4444555678888875 5599999999999999 99999999999999975321 1
Q ss_pred cccCCCCCCeEecccCCcccccC-ChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccc---------c
Q 007390 133 AEWNYGGFPVWLKYVPGIEFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW---------D 202 (605)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~R~~-~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~---------~ 202 (605)
=|.. ..|.|+...+.. ... .+..++.++++++.++.++++. |.|..|=|=||-=.-.. .
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChh
Confidence 1433 689999874110 000 1247888999999998888721 78999999999632110 0
Q ss_pred CCcchHHHHHHHHHHHHhcCCCcceEEecCC
Q 007390 203 IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD 233 (605)
Q Consensus 203 ~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~ 233 (605)
+...+..|+...-+.|++...++.++.++..
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1223456888888999999999999998864
No 30
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.86 E-value=0.0025 Score=71.43 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~--~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
.|+++|+.||++|+|+.++-|.|+...|. +|++|=+|....+++|+.|.++||..++-. -.=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 48999999999999999999999999997 567888899999999999999999977653 13358999976
Q ss_pred c-CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
. -+- .++...++..+|.+.++++++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 3 332 345566666666666666666
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.0073 Score=63.55 Aligned_cols=134 Identities=19% Similarity=0.322 Sum_probs=102.2
Q ss_pred HHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCC
Q 007390 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDN 156 (605)
Q Consensus 77 ~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~ 156 (605)
.|+++.=|-+.=.=|+..||++|.|+|+ --++..+.|+++||.+--- +.| |.+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 5666655556666699999999999999 7789999999999975322 222 322 5899998643 255
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCcc-------ccCCcchHHHHHHHHHHHHhcCCCcceEE
Q 007390 157 GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVE-------WDIGAPGKAYAKWAAQMAVGLNTGVPWVM 229 (605)
Q Consensus 157 ~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vP~~~ 229 (605)
++..+.+++++..++.+++ |.|+.|-|=||--.-+ +..+..+.+|+++.-+.|++.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 3589999999973311 11224578899999999999998888888
Q ss_pred ecCC
Q 007390 230 CKQD 233 (605)
Q Consensus 230 ~~~~ 233 (605)
++.+
T Consensus 192 NDY~ 195 (345)
T COG3693 192 NDYS 195 (345)
T ss_pred eccc
Confidence 8763
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.76 E-value=0.0049 Score=65.92 Aligned_cols=139 Identities=21% Similarity=0.335 Sum_probs=78.2
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCcC-CeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCC
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPG 149 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~-G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~ 149 (605)
+|.++.+|+.|+|.||.=| |+ .|.. |..|.+ +..++.+-|+++||.|+|-+- |- .-|..-|- -..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCC----CCCCc
Confidence 5899999999999999977 55 4555 665555 666777777899999998863 21 12221110 00111
Q ss_pred cccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccC--CccccCCc--chHH---HHHHHHHHHHhcC
Q 007390 150 IEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG--PVEWDIGA--PGKA---YAKWAAQMAVGLN 222 (605)
Q Consensus 150 ~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg--~~~~~~~~--~~~~---y~~~l~~~~~~~g 222 (605)
--.-.+-..-.+++..|.+.++..|+ .+|=.+=||||.||.. .. +..+. .-.. ++..-.+.+|+.+
T Consensus 95 aW~~~~~~~l~~~v~~yT~~vl~~l~------~~G~~pd~VQVGNEin~Gml-wp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 95 AWANLSFDQLAKAVYDYTKDVLQALK------AAGVTPDMVQVGNEINNGML-WPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp TCTSSSHHHHHHHHHHHHHHHHHHHH------HTT--ESEEEESSSGGGEST-BTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCccEEEeCcccccccc-CcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 10111345677899999999999998 3555778999999973 32 11221 1122 3333345566666
Q ss_pred CCcceE
Q 007390 223 TGVPWV 228 (605)
Q Consensus 223 ~~vP~~ 228 (605)
.++.++
T Consensus 168 p~~kV~ 173 (332)
T PF07745_consen 168 PNIKVM 173 (332)
T ss_dssp STSEEE
T ss_pred CCCcEE
Confidence 555443
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.67 E-value=0.023 Score=55.01 Aligned_cols=136 Identities=15% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC-----Cc---CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hE-----p~---~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
-.++++.|+..++.||++|||||=.= |...+ |. ++.|.-.....|+.+|++|++.||+|++-.+ -.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 46899999999999999999998421 22111 11 2223333445899999999999999998763 11
Q ss_pred cCCCCCCeEecccCCcccccCChhHH-HHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHHH
Q 007390 135 WNYGGFPVWLKYVPGIEFRTDNGPFK-AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKW 213 (605)
Q Consensus 135 w~~GG~P~WL~~~p~~~~R~~~~~y~-~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~ 213 (605)
|.|-.. .|+... +.-++..++|..+. .++.+.=+|=|=.|.....+ ...++.+.
T Consensus 89 ------~~~w~~--------~~~~~~~~~~~~v~~el~~~y-------g~h~sf~GWYip~E~~~~~~----~~~~~~~~ 143 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDWEAERNKQVADELWQRY-------GHHPSFYGWYIPYEIDDYNW----NAPERFAL 143 (166)
T ss_pred ------chhhhc--------cCHHHHHHHHHHHHHHHHHHH-------cCCCCCceEEEecccCCccc----chHHHHHH
Confidence 222221 222221 11122333333333 33446667777788765422 23455566
Q ss_pred HHHHHHhcCCCcceEE
Q 007390 214 AAQMAVGLNTGVPWVM 229 (605)
Q Consensus 214 l~~~~~~~g~~vP~~~ 229 (605)
|.+.+++..-+.|+..
T Consensus 144 l~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 144 LGKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHHhCCCCCeEE
Confidence 6665555433555543
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.55 E-value=0.0024 Score=71.56 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~--~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
.|+++++.||++|+|+.++-+.|...+|. ++++|=+|..-.+++|+.|.++||..++-. ..=.+|.||.+
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~~ 143 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLVT 143 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 37999999999999999999999999997 556787888899999999999999976553 13458999975
Q ss_pred c-CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
. -+- .++...++..+|.+.+++++.
T Consensus 144 ~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 144 EYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred hcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 3 332 244555555555555555555
No 35
>PLN02998 beta-glucosidase
Probab=96.52 E-value=0.0025 Score=71.79 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
..|+++++.||++|+|+-++-|.|+..+|. .|.+|=+|..--+++|+.+.++||..++-.= =| -+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 348999999999999999999999999996 6778889999999999999999998554431 13 38999976
Q ss_pred c-CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432233334455555555555555554
No 36
>PLN02814 beta-glucosidase
Probab=96.42 E-value=0.003 Score=71.28 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
..|+++++.||++|+|+-++-|.|+..+|. +|.+|-+|..--+++|+.|.++||..++-. ==|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL-----~H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL-----YHYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe-----cCCC---CCHHHHH
Confidence 348999999999999999999999999996 688999999999999999999999865543 1244 8999986
Q ss_pred c-CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
. -+-.=|..-..|.++++.-++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 3432222234455555555555555554
No 37
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.37 E-value=0.0046 Score=69.36 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEec
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~--~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (605)
..|+++++.||++|+|+-++-|.|+..+|. +|++|=+|..--+++|+.+.++||..++-. -.=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 348999999999999999999999999997 667888888999999999999999865443 1224899997
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 146 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4432222223455555555555555554
No 38
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.36 E-value=0.0042 Score=69.58 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEeccc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~ 147 (605)
.|+++++.||++|+|+-++-|.|+..+|. .|.+|=+|..--+++|+.|.++||.-++-. -.=.+|.||.+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~~ 126 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHSN 126 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHHc
Confidence 47999999999999999999999999997 577888899999999999999999855543 122489999865
Q ss_pred CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 148 p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
-+- .++...++..+|.+.+++++.
T Consensus 127 GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 127 GDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 333 344444444444444444443
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.35 E-value=0.01 Score=66.47 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEeccc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~ 147 (605)
.|+++++.||++|+|+-++-|.|+..+|. +|.+|=+|..--+++|+.|.++||..++-.= .=-+|.||.+.
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~~ 125 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHSN 125 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHHc
Confidence 48899999999999999999999999996 5778888999999999999999999665531 22489999865
Q ss_pred CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 148 p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
-+- .++...++..+|.+.+++.+.
T Consensus 126 GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 126 GDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 443 344445555555555555554
No 40
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.033 Score=58.07 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHH---HcCcEEEeccCceeccccCCCCCCeEec
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (605)
.=.|.|+-+|+.|+|.|+.-| ||..--..|+=-=.|+.|+.+.+++|+ ..||+|++-+= .-+|-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa 131 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA 131 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc
Confidence 346899999999999999854 776544555544457899999998875 58999999862 112221
Q ss_pred ccCCc------ccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccC-CccccCCc
Q 007390 146 YVPGI------EFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG-PVEWDIGA 205 (605)
Q Consensus 146 ~~p~~------~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg-~~~~~~~~ 205 (605)
+|+- ..--+-+.-.+++-.|.+..+..++++ |=-+=||||.||-. .+-|..++
T Consensus 132 -DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 132 -DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred -ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCCceeccCCC
Confidence 2321 112234566778888999999998854 44566999999973 34443344
No 41
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.043 Score=62.58 Aligned_cols=71 Identities=24% Similarity=0.373 Sum_probs=52.9
Q ss_pred ccEEEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcc-cCCCeeEEecceecCCCccEEEEEEeec
Q 007390 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGS-LENPKLTFSKNVKLRPGVNKISLLSTSV 556 (605)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~-~~~r~~~l~~~i~Lk~G~N~L~ILven~ 556 (605)
...+||. ++++|... .+..|.+.+.+- -+|||||+-+|.-.-. .+++.|-+|... ||++.|.|.|.=|-.
T Consensus 556 ~P~~w~k-~f~~p~g~------~~t~Ldm~g~GK-G~vwVNG~niGRYW~~~G~Q~~yhvPr~~-Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 556 QPLTWYK-TFDIPSGS------EPTALDMNGWGK-GQVWVNGQNIGRYWPSFGPQRTYHVPRSW-LKPSGNLLVVFEEEG 626 (649)
T ss_pred CCeEEEE-EecCCCCC------CCeEEecCCCcc-eEEEECCcccccccCCCCCceEEECcHHH-hCcCCceEEEEEecc
Confidence 4679999 78777543 346788888654 5699999999965432 236778899876 899999998766666
Q ss_pred C
Q 007390 557 G 557 (605)
Q Consensus 557 G 557 (605)
|
T Consensus 627 ~ 627 (649)
T KOG0496|consen 627 G 627 (649)
T ss_pred C
Confidence 5
No 42
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.26 E-value=0.0051 Score=69.03 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEec
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~--~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (605)
..|+++++.||++|+|+-++-|.|+..+|. +|.+|=+|..--+++|+.|.++||.-++-. -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 348999999999999999999999999997 566888888899999999999999865543 1224899997
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 146 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
+. -+-.-|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 4432232234455555555555555554
No 43
>PLN02849 beta-glucosidase
Probab=96.17 E-value=0.0052 Score=69.32 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=73.8
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcC-CeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEeccc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~-G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~ 147 (605)
.|+++|+.||++|+|+-++-|.|+..+|.. |.+|=+|..--+++|+.|.++||.-++-.= =| -+|.||.+.
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 151 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLEDD 151 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHHh
Confidence 489999999999999999999999999973 778888999999999999999998654431 13 389999763
Q ss_pred -CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 148 -p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
-+-.=|..=..|.++++.-++++..+++
T Consensus 152 yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 152 YGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred cCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4432232234455555555555555554
No 44
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.02 Score=63.04 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=79.2
Q ss_pred ceEEECCEEEEEEEEEecCCC-CCcccH-----HHHHHHHHHCCCCEEEEceeCCCCCCc----CCeeeeccchhHHHHH
Q 007390 44 KAVIINGQKRILISGSIHYPR-STPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPT----QGNYYFQDRYDLVRFI 113 (605)
Q Consensus 44 ~~~~~dG~p~~l~sG~iHy~r-~~~~~W-----~~~l~k~Ka~G~NtV~tyv~Wn~hEp~----~G~~df~G~~dl~~fl 113 (605)
..+.+.+...+.+--.-|-.. .....| ++.+..||.+|||+||.++.|..+++. |...+=+--.-|++.|
T Consensus 43 ~~~~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I 122 (407)
T COG2730 43 SPGQLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAI 122 (407)
T ss_pred CcceeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHH
Confidence 333333333333333333333 345668 899999999999999999994433554 3222112123789999
Q ss_pred HHHHHcCcEEEecc----CceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEE
Q 007390 114 KLVQQAGLYVHLRI----GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIIL 189 (605)
Q Consensus 114 ~la~~~GL~Vilr~----GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~ 189 (605)
+.|++.||+|++-. |.-.|-| ..|.... +. ...+..++...-++.|+.+.+ +.-.||+
T Consensus 123 ~~a~~~gi~V~iD~H~~~~~~~~~~------~s~~~~~--~~---~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg 184 (407)
T COG2730 123 NWAKKLGIYVLIDLHGYPGGNNGHE------HSGYTSD--YK---EENENVEATIDIWKFIANRFK-------NYDTVIG 184 (407)
T ss_pred HHHHhcCeeEEEEecccCCCCCCcC------ccccccc--cc---ccchhHHHHHHHHHHHHHhcc-------CCCceee
Confidence 99999999999873 2222211 1222110 00 022333444444455555555 3558999
Q ss_pred eccccccCC
Q 007390 190 SQIENEFGP 198 (605)
Q Consensus 190 ~QIENEyg~ 198 (605)
+|+=||--.
T Consensus 185 ~~~~NEP~~ 193 (407)
T COG2730 185 FELINEPNG 193 (407)
T ss_pred eeeecCCcc
Confidence 999999863
No 45
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.34 E-value=0.1 Score=48.70 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=66.5
Q ss_pred HHHHHHHHCCCCEEEEcee----C-----CCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCe
Q 007390 72 DLIQKAKDGGLDVIQTYVF----W-----NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~tyv~----W-----n~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 142 (605)
+-++.+|++|+|+|.++.= | ..|.+.|+- +..-|.++++.|++.||.|+.|...- -.|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998431 2 345555543 12366899999999999999998765 44555556799
Q ss_pred EecccCCcc-------------cccCChhHHHHHHHHHHHHHHHh
Q 007390 143 WLKYVPGIE-------------FRTDNGPFKAAMHKFTEKIVSMM 174 (605)
Q Consensus 143 WL~~~p~~~-------------~R~~~~~y~~~~~~~~~~l~~~i 174 (605)
|+..+++=+ .-+.|.+|++.+.+-+++|+..+
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998654311 12335678877777666666544
No 46
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.036 Score=56.79 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=48.1
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccCC
Q 007390 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLEN 531 (605)
Q Consensus 475 ~d~~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~ 531 (605)
+|+.|.+||.+++.+|+.+ +...+++..||+++++..|.|||||.-+-++.+.+.+
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP 139 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLP 139 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeecccccCccc
Confidence 7899999999999999876 2335678999999999999999999998888876654
No 47
>PRK09936 hypothetical protein; Provisional
Probab=94.77 E-value=0.65 Score=48.67 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=46.8
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccc-hhHHHHHHHHHHcCcEEEec
Q 007390 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~-~dl~~fl~la~~~GL~Vilr 126 (605)
+++++.|+.+++.+|+.||+|+= |-|..- |.=||.|. -.|.+.++.|++.||.|++-
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 58999999999999999999874 456544 11188775 58999999999999999875
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.035 Score=61.47 Aligned_cols=96 Identities=18% Similarity=0.302 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCe--eeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEec
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN--YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~--~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (605)
..++++++.||+||+|+.|+-|.|+..-|..+. .+=.|-.-.+++++.|.++|+.-++-.- =|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 347899999999999999999999999997654 7878888999999999999999665531 233 799998
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 146 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
+. -+-.=|. -.++..+|-+.++++++
T Consensus 131 ~~ygGW~nR~----~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWENRE----TVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCccCHH----HHHHHHHHHHHHHHHhc
Confidence 75 3432233 33444455555555544
No 49
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=94.41 E-value=0.25 Score=47.91 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=44.1
Q ss_pred CceEEEeccCCeEEEEECCEEEEEEE----c-ccCCC----eeEEecceecCCCccEEEEEEeecCcccccc-------c
Q 007390 501 DPLLTIWSAGHALQVFINGQLSGTVY----G-SLENP----KLTFSKNVKLRPGVNKISLLSTSVGLPNVGT-------H 564 (605)
Q Consensus 501 ~~~L~l~~i~D~~~VfVNG~~VGt~~----~-~~~~r----~~~l~~~i~Lk~G~N~L~ILven~Gr~NyG~-------~ 564 (605)
.++|.+.. ..+-.+||||+.||... . ....+ .|.+.. .|+.|+|+|.|++-+.+...... .
T Consensus 5 ~A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~--~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~ 81 (172)
T PF08531_consen 5 SARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTP--YLRPGENVIAVWLGNGWYNGRIGFGGFPRAR 81 (172)
T ss_dssp --EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TT--T--TTEEEEEEEEEE--S----------BTT
T ss_pred EEEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChH--HhCCCCCEEEEEEeCCccccccccccccccc
Confidence 46888876 55778999999999765 1 11111 233432 48999999999998866331111 0
Q ss_pred ccccccceeccEEEecCCCce-eeC-CCCCceeEe
Q 007390 565 FEKWNAGVLGPVTLKGLNEGT-RDI-SKQKWTYKV 597 (605)
Q Consensus 565 ~e~~~kGI~g~V~l~g~~~g~-idL-s~~~W~ykv 597 (605)
+. ...++...+.+.. .+|+ .-| |.+.|+...
T Consensus 82 ~~-~~~~l~~~l~i~~-~DG~~~~i~TD~sW~~~~ 114 (172)
T PF08531_consen 82 YG-GRPALLAQLEITY-ADGTTEVIVTDESWKCSD 114 (172)
T ss_dssp B-----EEEEEEEE----TTEEEE-E-STTSEEE-
T ss_pred cC-CCceeEEEEEEEe-cCCCEEEeccCCCeeeec
Confidence 11 2224443344433 4453 222 567899873
No 50
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=94.20 E-value=0.62 Score=52.53 Aligned_cols=149 Identities=17% Similarity=0.294 Sum_probs=98.2
Q ss_pred ceEEECCEEEEEEEEEecC-----CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHH
Q 007390 44 KAVIINGQKRILISGSIHY-----PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (605)
Q Consensus 44 ~~~~~dG~p~~l~sG~iHy-----~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~ 118 (605)
..|.|||.|.++.++.--+ .|.+-+.-+-.|+-++++|.|++++ |. -|. ..=+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGv------YEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGV------YESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Ccc------ccchhHHHHhhh
Confidence 4789999999998887443 2455666677899999999999998 44 133 345699999999
Q ss_pred cCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc---
Q 007390 119 AGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE--- 195 (605)
Q Consensus 119 ~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENE--- 195 (605)
.||.|---. =+.||-. ..|..|+.-++.=++.-+.+|+.| .+||.+-=.||
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~H-------pSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHH-------PSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccC-------CeEEEEeCCCccHH
Confidence 999875322 1234322 357788888887777666677644 47888876555
Q ss_pred ------cCCc-ccc-CCcch--HHHHHHHHHHHHhcCCCcceEEecC
Q 007390 196 ------FGPV-EWD-IGAPG--KAYAKWAAQMAVGLNTGVPWVMCKQ 232 (605)
Q Consensus 196 ------yg~~-~~~-~~~~~--~~y~~~l~~~~~~~g~~vP~~~~~~ 232 (605)
||.. ..+ ...++ --|.+-+++++..-.-..|.++...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 2211 000 00011 2245557777777778899887653
No 51
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=93.45 E-value=0.81 Score=51.80 Aligned_cols=334 Identities=17% Similarity=0.236 Sum_probs=157.7
Q ss_pred EEEEEEEEEecC------CCCCcccHHHHHHHH---HHCCCCEEEEcee--------CCCCCCcCC-----eeeecc--c
Q 007390 51 QKRILISGSIHY------PRSTPEMWPDLIQKA---KDGGLDVIQTYVF--------WNGHEPTQG-----NYYFQD--R 106 (605)
Q Consensus 51 ~p~~l~sG~iHy------~r~~~~~W~~~l~k~---Ka~G~NtV~tyv~--------Wn~hEp~~G-----~~df~G--~ 106 (605)
|++.=++|++=- .+.+++.=++.|+.+ +-+|++.+|+.|- +.+-+ .|+ .|+... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 455557787632 234443333333332 4489999998773 22222 223 222221 1
Q ss_pred hhHHHHHHHHHHc--CcEEEeccCceeccccCCCCCCeEecccCCc----ccc-cCChhHHHHHHHHHHHHHHHhhhccc
Q 007390 107 YDLVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFR-TDNGPFKAAMHKFTEKIVSMMKAEKL 179 (605)
Q Consensus 107 ~dl~~fl~la~~~--GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R-~~~~~y~~~~~~~~~~l~~~i~~~~~ 179 (605)
..+..+|+.|++. +|+++.-| |. .|+|++....+ .++ ...+.|.++...|+.+-++.++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~---- 218 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK---- 218 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH----
Confidence 2235678877664 57777766 54 89999874333 233 2345788888888888888787
Q ss_pred cccCCCcEEEeccccccCCcc---ccCCc------chHHHHH-HHHHHHHhcCC--CcceEEecCC--CCCc---cccc-
Q 007390 180 FQTQGGPIILSQIENEFGPVE---WDIGA------PGKAYAK-WAAQMAVGLNT--GVPWVMCKQD--DAPD---PVIN- 241 (605)
Q Consensus 180 ~~~~gGpII~~QIENEyg~~~---~~~~~------~~~~y~~-~l~~~~~~~g~--~vP~~~~~~~--~~p~---~~~~- 241 (605)
.+|=||=++-+.||-.... ..+.. ..+.|+. .|.-..++.++ ++-+++.+.. ..|+ .+++
T Consensus 219 --~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 219 --KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp --CTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred --HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 3455999999999976310 01111 1245654 47777778766 6766665532 2232 1221
Q ss_pred -----cCC--Cccc--c--------ccccCCCCCCccccccccccccccCCCCCC---CCHHHHHHHHHHHHHcCCeeee
Q 007390 242 -----TCN--GFYC--E--------KFVPNQNYKPKMWTEAWTGWFTEFGSAVPT---RPAEDLVFSVARFIQSGGSFIN 301 (605)
Q Consensus 242 -----~~~--g~~~--~--------~~~~~~~~~P~~~~E~~~Gwf~~wG~~~~~---~~~~d~~~~~~~~l~~g~s~~n 301 (605)
... +++| . ......|++.++.||-..|.- .|+..... ..++..+..+..-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 111 2233 1 112456889999999876521 12211111 1133444444445566644 2
Q ss_pred eec------ccCCcCCCCCC-CCcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcCcccCCCCccccCCCcceeE
Q 007390 302 YYM------YHGGTNFGRTS-GGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAH 374 (605)
Q Consensus 302 ~YM------~hGGTNfG~~~-g~~~~tSYDy~Api~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~p~~~~~~~~~~~~ 374 (605)
+-+ -.||-|++.-. .+.++..=+. +| -.++|.|+.|..+.+||+.-...+-... ......+++.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st~---~~~~~~l~~v 444 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDSDT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGSTS---SSSDSGLEAV 444 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEGGG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEEE---SSSTTTEEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEcCC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEeec---cCCCCceeEE
Confidence 222 25888875321 1111111111 11 1336899999988888753222221110 0111245666
Q ss_pred EeecCCCceEEEEeecCCC-ceeEEEECC-------eeeecCCceEE
Q 007390 375 VFNSKSGKCAAFLANYDTT-FSAKVSFGN-------AQYDLPPWSIS 413 (605)
Q Consensus 375 ~y~~~~~~~~~Fl~N~~~~-~~~~v~~~~-------~~~~~p~~sv~ 413 (605)
.|...+++-++-+.|-.+. ..++|++++ -.++|||.|+.
T Consensus 445 AF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 445 AFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred EEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 6877667766666665443 334566643 24678887763
No 52
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=92.56 E-value=19 Score=39.54 Aligned_cols=251 Identities=16% Similarity=0.190 Sum_probs=129.0
Q ss_pred cCCCCCcccHHHHHHHHHHCCCCEEEE-------ceeCCCCCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeccCceec
Q 007390 61 HYPRSTPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 61 Hy~r~~~~~W~~~l~k~Ka~G~NtV~t-------yv~Wn~hEp~~G~~df~-G~~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
.+.+..++.|. +.+|++|...|=. +-.|.-.-..-..-+-. ++--|.+|.+.|+++||++-+=-.+
T Consensus 77 ~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~--- 150 (384)
T smart00812 77 TAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL--- 150 (384)
T ss_pred CchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---
Confidence 34456677775 5788888885431 12344332211111111 2234667899999999987664332
Q ss_pred cccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHH
Q 007390 133 AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAK 212 (605)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~ 212 (605)
-+|.+ |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--.+
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~ 213 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSK 213 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHH
Confidence 36764 5443221111234456788888888888888877632 3444442 1111110 0111134
Q ss_pred HHHHHHHhcCCCc-ceEEecCCCCCccccccCCCcc-c-cccccCC-CCCCc-cccccccccccccCC-CCCCCCHHHHH
Q 007390 213 WAAQMAVGLNTGV-PWVMCKQDDAPDPVINTCNGFY-C-EKFVPNQ-NYKPK-MWTEAWTGWFTEFGS-AVPTRPAEDLV 286 (605)
Q Consensus 213 ~l~~~~~~~g~~v-P~~~~~~~~~p~~~~~~~~g~~-~-~~~~~~~-~~~P~-~~~E~~~Gwf~~wG~-~~~~~~~~d~~ 286 (605)
.|.++++++..+. -.+.++... .. .+...+++ + +...+.. ...|- .|+=.-.+|+-+-+. ....++++++.
T Consensus 214 ~l~~~~~~~qP~~~~vvvn~R~~-~~--~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li 290 (384)
T smart00812 214 EFLAWLYNLSPVKDTVVVNDRWG-GT--GCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELI 290 (384)
T ss_pred HHHHHHHHhCCCCceEEEEcccc-cc--CCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHH
Confidence 4555665554432 012222110 00 00000111 1 1111110 11111 111111356544443 23467999999
Q ss_pred HHHHHHHHcCCee-eeeecccCCcCCCCCCCCcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcCcccCCCC
Q 007390 287 FSVARFIQSGGSF-INYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDP 362 (605)
Q Consensus 287 ~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~g~~~~tSYDy~Api~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~p 362 (605)
..+....++|+++ +| -+-+.+|.+-++.-..|+++...++...+++-.+.|
T Consensus 291 ~~l~~~Vsk~GnlLLN-------------------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~ 342 (384)
T smart00812 291 RDLVDIVSKGGNLLLN-------------------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRP 342 (384)
T ss_pred HHHhhhcCCCceEEEc-------------------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCC
Confidence 9888889999874 22 234567888766778899999999888777766655
No 53
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.22 E-value=3.2 Score=48.26 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=38.9
Q ss_pred HHHHHCCCCEEEE-ceeCCCCCC----cCC-----eeeeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 75 QKAKDGGLDVIQT-YVFWNGHEP----TQG-----NYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 75 ~k~Ka~G~NtV~t-yv~Wn~hEp----~~G-----~~df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
.-+|++|+|+|+. .|+.+-... .+- .-.|.+..||.+|++.|++.||.|||-.=+
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 6679999999997 676431111 000 013556679999999999999999987544
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=91.14 E-value=0.59 Score=45.16 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCC-------CcCCee-----eeccchhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHE-------PTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hE-------p~~G~~-----df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
-+.+.|.-+|++|+|+|..-=++.... -.+..| .|....++.++++.|+++||.||+-.=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 345566679999999998753332221 112222 455678999999999999999998875554444
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.24 E-value=0.81 Score=48.68 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=68.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeC-------CCCCCc-------CCe-eeeccchhHHHHHHHHHHcCcEEEeccCce
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFW-------NGHEPT-------QGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~W-------n~hEp~-------~G~-~df~G~~dl~~fl~la~~~GL~Vilr~GPy 130 (605)
.++.-++.|++++++|||+|=.-|-+ +-.+|. +|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 57778899999999999999654432 122221 111 0133 79999999999999999776 11
Q ss_pred eccccC----CCCCCeEec-ccCCccccc----CC----hhHHHHHHHHHHHHHHHh-hhccccccCCCcEEEeccc
Q 007390 131 VCAEWN----YGGFPVWLK-YVPGIEFRT----DN----GPFKAAMHKFTEKIVSMM-KAEKLFQTQGGPIILSQIE 193 (605)
Q Consensus 131 i~aEw~----~GG~P~WL~-~~p~~~~R~----~~----~~y~~~~~~~~~~l~~~i-~~~~~~~~~gGpII~~QIE 193 (605)
-...-. .-..|.|+. +.|+..... .+ .+-..+|+.|+..++..| +++ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEec
Confidence 111001 112578875 445532222 11 123456777777777554 432 35567776
No 56
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.89 E-value=0.26 Score=54.54 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=104.8
Q ss_pred eEEECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCC-CC---cCCeeee-ccchhHHHHHHHHHHc
Q 007390 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---TQGNYYF-QDRYDLVRFIKLVQQA 119 (605)
Q Consensus 45 ~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~h-Ep---~~G~~df-~G~~dl~~fl~la~~~ 119 (605)
.|.++++++-.++..--++++..++-+++|+-|+.+|+++++.. .+- |+ ++|.-+- +|..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888877766777777788889999999999999985 344 55 2333222 2345789999999999
Q ss_pred CcEEEeccCceeccccCCCCCC---eEec-ccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc
Q 007390 120 GLYVHLRIGPYVCAEWNYGGFP---VWLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (605)
Q Consensus 120 GL~Vilr~GPyi~aEw~~GG~P---~WL~-~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENE 195 (605)
+|+|+++. |.+-=..||.= .|-- ..|+-.. .|+.++..-++|...+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998774 33322344421 1221 1232111 256666667788777776544 4457888999999
Q ss_pred cCCccccCCcchHHHHHHHHHHHH
Q 007390 196 FGPVEWDIGAPGKAYAKWAAQMAV 219 (605)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~~ 219 (605)
.... -...+..+++|+++|+-
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 2211 12346789999999963
No 57
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.84 E-value=2 Score=47.39 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEce-------------eCCCCCCcCCeee-eccchhHHHHHHHHHHcCcEEEeccCce
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNYY-FQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv-------------~Wn~hEp~~G~~d-f~G~~dl~~fl~la~~~GL~Vilr~GPy 130 (605)
..+..-.+.|.+++++|+|||-.-| +|..-. ||.+- =.|..-|...|++|++.||.|+-+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3678889999999999999997322 344332 33321 1234478888999999999999999888
Q ss_pred eccccCCCC---CCeEeccc-CCcc-cccCC-------hhHHHHHHHHHHHHH-HHhhhccccccCCCcEEEeccccccC
Q 007390 131 VCAEWNYGG---FPVWLKYV-PGIE-FRTDN-------GPFKAAMHKFTEKIV-SMMKAEKLFQTQGGPIILSQIENEFG 197 (605)
Q Consensus 131 i~aEw~~GG---~P~WL~~~-p~~~-~R~~~-------~~y~~~~~~~~~~l~-~~i~~~~~~~~~gGpII~~QIENEyg 197 (605)
..|--..-. -|.|+... |+.. .|... .++.-+++.|+..++ +.++++ .|=++|.+-=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 765421111 25555543 3322 22221 245667888887777 556633 456778766544
No 58
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.71 E-value=4.9 Score=41.45 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=76.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eccCceeccccCCCCCCeEec
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 145 (605)
...|++.|+.++++|++.|+.-+ +..| ..+...+++ ..++..+.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 46799999999999999999943 2222 223334454 3578899999999999975 444311 1111
Q ss_pred ccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCc---chHHHHHHHHHHHHhcC
Q 007390 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (605)
Q Consensus 146 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (605)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++. ......+ .-.+.++.+.+.+.+.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 222356666666677777777666 32 56666542 11110 0000000 01235566677777888
Q ss_pred CCc
Q 007390 223 TGV 225 (605)
Q Consensus 223 ~~v 225 (605)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 59
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=89.19 E-value=4.1 Score=41.85 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=74.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eccCceeccccCCCCCCeEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 146 (605)
-.|++.++.++++|++.|+..+. ..|+ .....+|+ ..++..+-++++++||.|. +.++.+ +.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~~---------- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----RR---------- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----cC----------
Confidence 47999999999999999999532 2221 01122333 3478999999999999875 333211 00
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccc-cCCcchHHHHHHHHHHHHhcCCCc
Q 007390 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKAYAKWAAQMAVGLNTGV 225 (605)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 225 (605)
..+.+.|+..+++..+.++++++..+ .+ |.+.|.+.--..+..... ..-..-.+.++.+.+++.+.|+.+
T Consensus 79 ---~~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 79 ---FPFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---cCCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 11334566666666666777776666 32 456665421000000000 000011246677778888888754
No 60
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=88.51 E-value=2.9 Score=50.05 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred cccCchhhhhc-CCCCCccEEEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecce
Q 007390 462 FTKDGLWEQVY-LTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNV 540 (605)
Q Consensus 462 ~~~p~~~Eqlg-~t~d~~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i 540 (605)
..-|.+|+..+ .-+..+.=++|.+++.+|... .+.+..|.+..+.-.+.||+||+.+++..+.. +.|.+..+.
T Consensus 45 i~VP~~w~~~~~~~~~~~~~~~y~~~~~~~~~~----~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~~--~~fev~vng 118 (808)
T COG3250 45 IAVPGNWQDQGEYDRPIYTNVWYPREVFPPKVP----AGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVY--TPFEVDVTG 118 (808)
T ss_pred ccCCccHhhcCccCcceecceeeeecccCCccc----cCCceEEEEeccccceeEEeCCeEEEEecCce--eEEEEeecc
Confidence 33466677776 435556668999998776543 56778999999999999999999999988765 345555544
Q ss_pred ecCCCccEEEEEEee
Q 007390 541 KLRPGVNKISLLSTS 555 (605)
Q Consensus 541 ~Lk~G~N~L~ILven 555 (605)
.+..+.|.+.+-++.
T Consensus 119 ~~v~~~~~~~~~~~~ 133 (808)
T COG3250 119 PYVGGGKDSRITVEF 133 (808)
T ss_pred ceecCCcceEEEEee
Confidence 455566666655555
No 61
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=88.26 E-value=0.72 Score=50.05 Aligned_cols=71 Identities=27% Similarity=0.240 Sum_probs=48.6
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceec
Q 007390 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 56 ~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
+|=++.+...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..+++.|+++||.|++-+.|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 45567777778889999999999999998888 999999643221 137889999999999999999877543
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.39 E-value=7.8 Score=46.08 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=36.9
Q ss_pred HHHHHCCCCEEEE-cee-------CCC-----CCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 75 QKAKDGGLDVIQT-YVF-------WNG-----HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 75 ~k~Ka~G~NtV~t-yv~-------Wn~-----hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
.-+|++|+|+|.. .|+ |.+ ..+.| .|.+..||.+|++.|+++||.|||-.=
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5669999999996 343 211 11111 355668999999999999999998743
No 63
>PLN03059 beta-galactosidase; Provisional
Probab=87.10 E-value=1.1 Score=53.39 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=49.5
Q ss_pred EEEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEc---------------------------ccCCC
Q 007390 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYG---------------------------SLENP 532 (605)
Q Consensus 480 yvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~---------------------------~~~~r 532 (605)
..||+++|++|... .+..|.+.+.+- -+|||||+-+|.-.- ...++
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmGK-G~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~ 692 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMGK-GQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQR 692 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCCC-eeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeE
Confidence 79999999986432 236788887654 459999999997541 11234
Q ss_pred eeEEecceecCCCccEEEEEEee
Q 007390 533 KLTFSKNVKLRPGVNKISLLSTS 555 (605)
Q Consensus 533 ~~~l~~~i~Lk~G~N~L~ILven 555 (605)
-|.+|.+. ||+|+|+|.|.=+-
T Consensus 693 lYHVPr~~-Lk~g~N~lViFEe~ 714 (840)
T PLN03059 693 WYHVPRSW-LKPSGNLLIVFEEW 714 (840)
T ss_pred EEeCcHHH-hccCCceEEEEEec
Confidence 47789886 89999999776553
No 64
>PRK14706 glycogen branching enzyme; Provisional
Probab=86.68 E-value=15 Score=43.13 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 74 l~k~Ka~G~NtV~t-yv~-------Wn~h-----Ep~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+.-+|++|+|+|+. .|. |.+. .|.+ .|.+..||.+|++.|.++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999995 231 3221 1111 23456799999999999999999874
No 65
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=86.39 E-value=13 Score=40.70 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=54.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc----eeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eccCceeccccCCCCC
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTY----VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGF 140 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~ty----v~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~ 140 (605)
++....+++++++++|+..|+.. ++|..-..+. ..++.++-++++++||.|. +-++-+.+..+..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 34567799999999999999964 2222111100 2357899999999999975 33321111112222
Q ss_pred CeEecccCCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 141 PVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 141 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
.+-+.|+..+++.-+.+++.++.-+
T Consensus 101 ----------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 ----------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2445577766665555566665555
No 66
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=85.83 E-value=9.5 Score=41.11 Aligned_cols=140 Identities=15% Similarity=0.238 Sum_probs=89.2
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHH---HcCcEEEeccCceeccccCCCCC
Q 007390 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGF 140 (605)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~ 140 (605)
-..|+..+..++.+|+.||+.--.|-.| |.|.+-|++-++..- +.+|...|+ |.+-.|..
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~--- 116 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR--- 116 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh---
Confidence 3578899999999999999998888777 456777777776553 345554444 22222311
Q ss_pred CeEecccCCcccccCChhHH--HHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHHH
Q 007390 141 PVWLKYVPGIEFRTDNGPFK--AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMA 218 (605)
Q Consensus 141 P~WL~~~p~~~~R~~~~~y~--~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~ 218 (605)
.|=.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++==-.+. ..-+++++.+++.+
T Consensus 117 -~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a 184 (345)
T PF14307_consen 117 -RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEA 184 (345)
T ss_pred -ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHH
Confidence 121111222111 1121 224667778888888766666788899987422222 23577999999999
Q ss_pred HhcCCCcceEEecC
Q 007390 219 VGLNTGVPWVMCKQ 232 (605)
Q Consensus 219 ~~~g~~vP~~~~~~ 232 (605)
++.|+.-+.+....
T Consensus 185 ~~~G~~giyii~~~ 198 (345)
T PF14307_consen 185 KEAGLPGIYIIAVQ 198 (345)
T ss_pred HHcCCCceEEEEEe
Confidence 99999877655443
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.25 E-value=2.2 Score=41.08 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=72.5
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccc
Q 007390 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (605)
Q Consensus 74 l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R 153 (605)
|+.++++|+..|+...........+ ...++++.++++++||.+..--.+. .+.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~---~~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT---NFWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE---SSSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc---cccc----------cccccc
Confidence 5789999999999865433222211 3478999999999999965322111 0111 111134
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccc--cccCCcccc-CCcchHHHHHHHHHHHHhcCCCc
Q 007390 154 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTGV 225 (605)
Q Consensus 154 ~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 225 (605)
+.+++ ++...+.+.+.++..+ .+ |.+.|.+..- +........ .-+.-.+.++.+.+.+.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 44444 7777778888888877 33 5677777754 222111000 00012346677777788888653
No 68
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.03 E-value=7.4 Score=40.11 Aligned_cols=98 Identities=10% Similarity=0.178 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHc-CcEEEeccCceeccccCCCCCCeEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
..|++.|+.+|++|++.|+.-+........+ .....++.++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 7799999999999999999865432111111 11446899999999999 7665543 2331
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEecccc
Q 007390 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (605)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIEN 194 (605)
+.+...++.-+++.-..+++.++..+ .+ |-+.|.+...+
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 11223344444554555555555555 22 45566665543
No 69
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=84.62 E-value=18 Score=43.23 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ee-------CCCCCC---cCCeeeeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTY-VF-------WNGHEP---TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~ty-v~-------Wn~hEp---~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
+.|++.|..+|++|+|+|+.- |+ |.++-. .+ .-.|.+..+|.+||+.|.++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 447888999999999999863 21 332211 01 113555689999999999999999987544
No 70
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.86 E-value=20 Score=42.67 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCEEEE-cee-------CCCC-----CCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 73 LIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~t-yv~-------Wn~h-----Ep~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
.|.-+|++|+|+|+. .|+ |.+. .|.+ .|.+..++.+|++.|.++||.|||-.=|-=+++
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 467789999999985 342 4321 1222 355668999999999999999998765543433
No 71
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=82.85 E-value=2 Score=48.31 Aligned_cols=62 Identities=10% Similarity=0.223 Sum_probs=42.9
Q ss_pred cccHH---HHHHHHHHCCCCEEEEc-eeCCC-----CCCcC-Cee-------------eeccchhHHHHHHHHHHcCcEE
Q 007390 67 PEMWP---DLIQKAKDGGLDVIQTY-VFWNG-----HEPTQ-GNY-------------YFQDRYDLVRFIKLVQQAGLYV 123 (605)
Q Consensus 67 ~~~W~---~~l~k~Ka~G~NtV~ty-v~Wn~-----hEp~~-G~~-------------df~G~~dl~~fl~la~~~GL~V 123 (605)
.+.|. +.|.-+|++|+++|-.- ++-+. |--.+ .-| .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 56777899999999864 54432 22222 112 2445679999999999999999
Q ss_pred EeccC
Q 007390 124 HLRIG 128 (605)
Q Consensus 124 ilr~G 128 (605)
|+-.=
T Consensus 98 i~D~V 102 (479)
T PRK09441 98 YADVV 102 (479)
T ss_pred EEEEC
Confidence 98753
No 72
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=82.15 E-value=2.5 Score=43.56 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
+...++-|+.+|++||++||+ ..|..+.+ ..+..++|+.|++.|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 678899999999999999998 34554443 34677999999999999999987
No 73
>PRK01060 endonuclease IV; Provisional
Probab=80.75 E-value=18 Score=37.23 Aligned_cols=93 Identities=13% Similarity=0.196 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEE---EeccCceeccccCCCCCCeEecc
Q 007390 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV---HLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 70 W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~V---ilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
+++.++.++++|++.|+..+- +-+.-.++.++- .++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999998542 112111222222 26888999999999973 22 23331
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 007390 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (605)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (605)
+.+-+.|+..+++..+.+++.++.-+ .+ |.++|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12344577777777777777777665 33 44566554
No 74
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.67 E-value=7.2 Score=40.66 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=63.3
Q ss_pred cceEEEccceEEECCEEEEEEEE--EecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec--cchhHHH
Q 007390 36 KASVSYDHKAVIINGQKRILISG--SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVR 111 (605)
Q Consensus 36 ~~~v~~d~~~~~~dG~p~~l~sG--~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~--G~~dl~~ 111 (605)
...|... .+.+.+.+++++.| ++| .++.-.+.-+++|++|+..++.|.+=+...| +.|. |...+..
T Consensus 13 ~~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~ 82 (266)
T PRK13398 13 KTIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKI 82 (266)
T ss_pred CcEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHH
Confidence 3445443 36777778999988 355 5777888999999999999999988743332 3566 5789999
Q ss_pred HHHHHHHcCcEEEecc
Q 007390 112 FIKLVQQAGLYVHLRI 127 (605)
Q Consensus 112 fl~la~~~GL~Vilr~ 127 (605)
+-+.|++.||.++-.|
T Consensus 83 l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 83 LKEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHHcCCCEEEee
Confidence 9999999999988775
No 75
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.03 E-value=1.9 Score=44.12 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCC----CCcCCee-e----eccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGH----EPTQGNY-Y----FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~h----Ep~~G~~-d----f~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
.+.|.-+|++|+|+|..-=++... --.+-.| + |.+..+|.++++.|++.||+|||-.=|
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 356888999999999975333322 1111111 1 334579999999999999999986533
No 76
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=79.86 E-value=4.7 Score=45.48 Aligned_cols=65 Identities=17% Similarity=0.330 Sum_probs=42.7
Q ss_pred EEecCCCCCcccHHHHHHHHH-HCCCCEEEEceeCCCC-C--------CcCC--eeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 58 GSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTYVFWNGH-E--------PTQG--NYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 58 G~iHy~r~~~~~W~~~l~k~K-a~G~NtV~tyv~Wn~h-E--------p~~G--~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
|.-|.....++.|+..|+.++ +.||..|++ |++. . ..+| .|||+ .||.+++...+.||+-++
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~v 102 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFV 102 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEE
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEE
Confidence 444544566788999999886 899999987 3333 1 1123 39999 999999999999999877
Q ss_pred ccC
Q 007390 126 RIG 128 (605)
Q Consensus 126 r~G 128 (605)
..|
T Consensus 103 el~ 105 (486)
T PF01229_consen 103 ELG 105 (486)
T ss_dssp EE-
T ss_pred EEE
Confidence 765
No 77
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=79.85 E-value=2.8 Score=34.16 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=28.3
Q ss_pred eEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEE
Q 007390 503 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISL 551 (605)
Q Consensus 503 ~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~I 551 (605)
.|.|.+.-..+.|||||+++|.+. ..+. .|+.|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 678888888899999999999433 1222 26788777665
No 78
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=79.25 E-value=21 Score=36.70 Aligned_cols=89 Identities=16% Similarity=0.355 Sum_probs=61.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcC--CeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeE
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~--G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 143 (605)
..-.|+++|.-+|++||+-|+. +.-|.-+ -+.||+. .....+.+++.+.|+.+ |-+|
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmC----------- 74 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMC----------- 74 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchh-----------
Confidence 3457999999999999999999 6677654 3677873 23446788899999832 3334
Q ss_pred ecccCCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 144 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
|..+...-+-+.|+.-++.....+.+-+..-.
T Consensus 75 lSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~ 106 (287)
T COG3623 75 LSAHRRFPFGSKDEATRQQALEIMEKAIQLAQ 106 (287)
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12222233668899888887777766555443
No 79
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.86 E-value=35 Score=34.85 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=69.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe-ccCceeccccCCCCCCeEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL-RIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil-r~GPyi~aEw~~GG~P~WL~~ 146 (605)
..+++.|+.++++|++.|+...-.. |+-.+ +++ ..++.++-++++++||.|.. .++ .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc-
Confidence 3599999999999999999832110 11111 121 24788899999999999753 321 123333221
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCC---cchHHHHHHHHHHHHhcCC
Q 007390 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG---APGKAYAKWAAQMAVGLNT 223 (605)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~ 223 (605)
..++.-+++..+.+++.++.-+ .=|.+.|.+-.-.. +... ... ..-.+.++.|.+.+.+.|+
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~------~lGa~~i~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAK------EMNAGYTLISAAHA-GYLT-PPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHH------HhCCCEEEEcCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1234444444455555555544 22455555532111 1000 000 0122367777788888876
Q ss_pred Cc
Q 007390 224 GV 225 (605)
Q Consensus 224 ~v 225 (605)
.+
T Consensus 144 ~l 145 (275)
T PRK09856 144 DL 145 (275)
T ss_pred EE
Confidence 53
No 80
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.72 E-value=36 Score=34.94 Aligned_cols=126 Identities=15% Similarity=0.226 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eccCceeccccCCCCCCeEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 146 (605)
..|++.++.++++|+..|+..+. ..++ ....++++ ..++.++-++++++||.|. +.++.. ..+
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~------ 84 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRF------ 84 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------ccc------
Confidence 36999999999999999999532 1111 01112222 2468899999999999875 333211 001
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCc---c----hHHHHHHHHHHHH
Q 007390 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---P----GKAYAKWAAQMAV 219 (605)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~---~----~~~y~~~l~~~~~ 219 (605)
.+-+.++.-++...+.+++.++..+ . =|.++|.+. |. ...++. . -.+.++.|.+++.
T Consensus 85 ----~~~~~~~~~r~~~~~~~~~~i~~a~--~----lG~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 85 ----PLGSEDDAVRAQALEIMRKAIQLAQ--D----LGIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--H----cCCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHH
Confidence 1123455556666667777777666 2 256666542 11 000111 0 1335677777788
Q ss_pred hcCCCc
Q 007390 220 GLNTGV 225 (605)
Q Consensus 220 ~~g~~v 225 (605)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 887653
No 81
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=77.29 E-value=38 Score=34.48 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=34.7
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 70 W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
++++|++++++|++.|+.. . |. ..+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7899999999999999983 1 11 13789999999999999854
No 82
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=77.14 E-value=3.7 Score=47.07 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHCCCCEEEEc-eeCCC---CCCcCCee-----eeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 69 MWPDLIQKAKDGGLDVIQTY-VFWNG---HEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~ty-v~Wn~---hEp~~G~~-----df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
-+.+.|.-+|++|+|+|-.- ++-+- |--.+..| .|.+..||.+|++.|+++||+|||-.=|
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 46678889999999999863 44321 10011111 1445679999999999999999987544
No 83
>PRK14705 glycogen branching enzyme; Provisional
Probab=76.50 E-value=46 Score=41.97 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCEEEE-cee-------CCCC-----CCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 73 LIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~t-yv~-------Wn~h-----Ep~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.|.-+|++|+|+|+. .|+ |.+. .|.+ .|.+..||..|++.|.+.||.|||-.
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 367899999999996 342 4321 1111 35566899999999999999999874
No 84
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=74.76 E-value=13 Score=39.29 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=50.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
...+..++.++++|+.||.+=...+-..++... -+.|.|.-. -|..++++..+++|+++++..=|+|+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 467778999999999996654444433333322 135665532 2899999999999999999999998743
No 85
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=73.95 E-value=5.4 Score=45.77 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCEEEE-cee-------CCC-----CCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 72 DLIQKAKDGGLDVIQT-YVF-------WNG-----HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~t-yv~-------Wn~-----hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+.|.-+|++|+|+|.. .|+ |.+ ..+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999985 242 322 12222 35567899999999999999999874
No 86
>PRK12313 glycogen branching enzyme; Provisional
Probab=73.49 E-value=6.5 Score=45.92 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=38.5
Q ss_pred HHHHHHCCCCEEEE-cee-------CCC-----CCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 74 IQKAKDGGLDVIQT-YVF-------WNG-----HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 74 l~k~Ka~G~NtV~t-yv~-------Wn~-----hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
|.-+|++|+|+|.. .|+ |.+ ..+.| .|.+..||.+|++.|+++||.|||-.=|
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 58889999999995 342 211 11111 3566789999999999999999987433
No 87
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=72.99 E-value=8.4 Score=32.91 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEeecC
Q 007390 500 QDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (605)
Q Consensus 500 ~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILven~G 557 (605)
+...|++..-....+-||||+++|+.... ..+.++. ...|+++|+| +...|
T Consensus 32 ~~l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~~~---~~~G~h~l~v-vD~~G 82 (89)
T PF06832_consen 32 QPLVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFWQP---DRPGEHTLTV-VDAQG 82 (89)
T ss_pred ceEEEEEeCCCCcEEEEECCEEcccCCCC---CeEEeCC---CCCeeEEEEE-EcCCC
Confidence 34566666666699999999999876643 2344332 2789999987 55555
No 88
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=72.34 E-value=12 Score=41.11 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
..+.|+.+++.+|++||+.... |.. ....+.. ..|...++.|++.|+++++-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig--~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIG--SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ecc--cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7899999999999999999888 444 2222332 378889999999999999987
No 89
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=72.21 E-value=13 Score=39.80 Aligned_cols=112 Identities=17% Similarity=0.268 Sum_probs=70.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-------eeCCCCCCcCCeeee-cc-chhHHHHHHHHHHcCcEEEeccCceeccccC
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTY-------VFWNGHEPTQGNYYF-QD-RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~ty-------v~Wn~hEp~~G~~df-~G-~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 136 (605)
.++.-+..|+.+|+.|+|+|=+= |.+....|..-+..- .. ..|+.++++.++++|+|+|.|+=-+-- ..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD-~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKD-PVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecC-hHH
Confidence 45678889999999999998642 344333332222211 11 369999999999999999999743221 111
Q ss_pred CCCCCeEecccC-CcccccCC-----hhHHHHHHHHHHHHHHHhhhcc
Q 007390 137 YGGFPVWLKYVP-GIEFRTDN-----GPFKAAMHKFTEKIVSMMKAEK 178 (605)
Q Consensus 137 ~GG~P~WL~~~p-~~~~R~~~-----~~y~~~~~~~~~~l~~~i~~~~ 178 (605)
..--|.|-.+.. +-..|.++ .+|.+++.+|.-.|++..++.+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 111466655322 11122221 3688999999999999888544
No 90
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=72.18 E-value=15 Score=29.38 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5667789999999999999999733 333 58877765 5778999999999988754
No 91
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.70 E-value=8.2 Score=44.40 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCEEEEc-eeCCCCCCcC-Cee----------eeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 70 WPDLIQKAKDGGLDVIQTY-VFWNGHEPTQ-GNY----------YFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 70 W~~~l~k~Ka~G~NtV~ty-v~Wn~hEp~~-G~~----------df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
+.+.|.-+|++|+++|-.- ++-+ |.. .-| +|....||.++++.|+++||+|||-.=
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5578899999999999863 4422 111 112 244567999999999999999997653
No 92
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=71.67 E-value=7.8 Score=45.12 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEc-e-------eCCCC-----CCcCCeeeeccchhHHHHHHHHHHcCcEEEec
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTY-V-------FWNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~ty-v-------~Wn~h-----Ep~~G~~df~G~~dl~~fl~la~~~GL~Vilr 126 (605)
.+.=.+.|.-+|+||+++||.- | -|.+- -|+. .|..-.||.+||+.|.++||-|||-
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3445668899999999999961 2 24321 1111 2334579999999999999999985
No 93
>PLN02960 alpha-amylase
Probab=71.44 E-value=8 Score=46.59 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEE-cee-------CCCC-----CCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 71 PDLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~t-yv~-------Wn~h-----Ep~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
++.|.-+|++|+|+|+. .|+ |.+. .|.+ .|....+|.+|++.|.++||.|||-.=
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~---~yGtp~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS---RFGTPDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccc---ccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34688999999999996 343 3321 1111 344567999999999999999998753
No 94
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.05 E-value=8.2 Score=39.63 Aligned_cols=53 Identities=11% Similarity=0.322 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
....++.++.+|+.||++||+ ..|..+++ ..+..++|+.+++.||.|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 367788889999999999998 45655554 347789999999999999988873
No 95
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=70.96 E-value=1.7 Score=44.12 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=45.1
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceec
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
-...+.+.++|.+.|.+.++|....+..-.+..+ ++.++.+.|++.||.||+. +|..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECEC
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecC
Confidence 5678999999999999999997655544333444 8999999999999999999 4443
No 96
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.23 E-value=6.4 Score=45.06 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-eeCC---CCCCcCCee-----eeccchhHHHHHHHHHHcCcEEEec
Q 007390 68 EMWPDLIQKAKDGGLDVIQTY-VFWN---GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~ty-v~Wn---~hEp~~G~~-----df~G~~dl~~fl~la~~~GL~Vilr 126 (605)
.-+.+.|.-+|++|+|+|-.- |+=+ -|--..-.| .|.+..|+.++++.|++.||+|||-
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 346678999999999999863 4311 010000000 2455679999999999999999985
No 97
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=69.48 E-value=7.8 Score=44.60 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=48.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEc-eeCCCCCCcCCee--------eeccc----hhHHHHHHHHHHcCcEEEeccCceecc
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~ty-v~Wn~hEp~~G~~--------df~G~----~dl~~fl~la~~~GL~Vilr~GPyi~a 133 (605)
++.=+..|..|+.+.||.|+.| ..|.||.|-|+.= |+.|+ .-+...|+.|++.||.++.=--=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 4567789999999999999999 7799999987543 23333 367899999999999988543222222
Q ss_pred cc--CCCCCCeEecc
Q 007390 134 EW--NYGGFPVWLKY 146 (605)
Q Consensus 134 Ew--~~GG~P~WL~~ 146 (605)
+. ..|=.|.|-+-
T Consensus 197 ~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLY 211 (559)
T ss_dssp TT--S--SS-GGBEE
T ss_pred cCcccccCCchhhhh
Confidence 22 25567888753
No 98
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=69.19 E-value=9.4 Score=43.30 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcC---CeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEec
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~---G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (605)
.++++++.||++|++.-|.-|.|+..=|.- +..+-.|..-...+|+...++||..++-. | -| .+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 478999999999999999999999877752 45777888888899999999999865442 1 24 3788887
Q ss_pred c-cCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 007390 146 Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (605)
Q Consensus 146 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (605)
+ .-+-.-+..=..|+++.+--|++...++| -...=|...|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 33332233345688888888888888888 44334555555544
No 99
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=69.02 E-value=7.7 Score=37.63 Aligned_cols=55 Identities=33% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCceEEEec----cCCeEEEEECCEEEEEEE-----------------cccCCCeeEEecceecCCCccEEEEEEeec
Q 007390 500 QDPLLTIWS----AGHALQVFINGQLSGTVY-----------------GSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (605)
Q Consensus 500 ~~~~L~l~~----i~D~~~VfVNG~~VGt~~-----------------~~~~~r~~~l~~~i~Lk~G~N~L~ILven~ 556 (605)
+..+|+|.- ..-+.+|.||| .++... +....-.|++|.. .|++|.|+|+|-+.+-
T Consensus 78 ~~~tL~i~la~a~~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~-~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 78 GTYTLRIALAGASAGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPAS-LLKAGENTITLTVPSG 153 (167)
T ss_dssp --EEEEEEEEEEETT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TT-SS-SEEEEEEEEEE-S
T ss_pred CcEEEEEEeccccCCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHH-HEEeccEEEEEEEccC
Confidence 456676653 35578999999 444421 1111124667765 4999999999877653
No 100
>PLN00196 alpha-amylase; Provisional
Probab=68.50 E-value=23 Score=39.53 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEEc-eeCCC--CCCcCCe-ee-----eccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 71 PDLIQKAKDGGLDVIQTY-VFWNG--HEPTQGN-YY-----FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~ty-v~Wn~--hEp~~G~-~d-----f~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
.+.|.-+|++|+++|-.. ++-+. |--.+.. |+ |....+|.++++.|++.||+||+-.=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 467888899999999875 33221 2212211 22 334579999999999999999987643
No 101
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=68.24 E-value=10 Score=40.66 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=58.8
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCe-eeeccchhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 56 ~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~-~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
++=++.+.|.+.+.=...|++|...|+.-|=| ++|.|++.. --|. -+.++++.|.++||+||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45577777888888889999999999998888 999998752 1133 677899999999999999998876544
No 102
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=67.56 E-value=10 Score=43.21 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=47.3
Q ss_pred EEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEeec
Q 007390 481 LWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (605)
Q Consensus 481 vWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILven~ 556 (605)
--|.+++.+=+-+ +-+.+.|.+.+++-.+.|||||+.|+.......+-.|.++ . .-+|.|.|+|+-.+-
T Consensus 78 wtysr~frl~dl~----~~~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~~y~~~vt--~-ii~~~n~i~~~f~ss 146 (867)
T KOG2230|consen 78 WTYSRKFRLIDLD----DTVGAFLEIESVDTIATVYVNGQKVLHSRNQFLPYHVNVT--D-IIAGENDITIKFKSS 146 (867)
T ss_pred ccceeeeEEEEcc----ccccceEEEeecceeEEEEEccEEEeeccccceeEEEeEE--E-EecCCcceEEEeehh
Confidence 3466666542211 2345789999999999999999999988766544334443 2 234888888876654
No 103
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.49 E-value=37 Score=35.89 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=53.0
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEceeCCCCCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 63 PRSTPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N--tV~tyv~Wn~hEp~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
...+.+.-.+.++++++.|+. +|-+=..|- ..-|.|.|.-. -|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 346788889999999999964 555544453 34566666432 3899999999999999999999999854
No 104
>PRK09989 hypothetical protein; Provisional
Probab=67.24 E-value=57 Score=33.18 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
-.+++|++++++|++.|+...+|. .+...+-++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999844332 2456788889999999774
No 105
>PRK12677 xylose isomerase; Provisional
Probab=67.11 E-value=46 Score=36.55 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec---cchhHHHHHHHHHHcCcEEE-eccCceeccccCCCCCCeE
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVW 143 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~---G~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~W 143 (605)
-.+++.++++++.|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-|.-|.+..+..|
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g----- 99 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG----- 99 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC-----
Confidence 357899999999999999883 1111112111 12358899999999999976 54432211122222
Q ss_pred ecccCCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 144 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 -------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 -------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2455677777766666666665555
No 106
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=66.03 E-value=37 Score=40.13 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=66.5
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceec
Q 007390 68 EMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~---------------tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
+.-...|..+|++|+|||= .|++|.+.--+..-|| -| ..+++.+.|+.|..+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-----~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-----RV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-----HH--HHHHHHhhCCEEEEeccceee
Confidence 4567789999999999985 5777833332223332 11 345689999999999999853
Q ss_pred c---------ccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc
Q 007390 133 A---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (605)
Q Consensus 133 a---------Ew~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENE 195 (605)
. +++..+-|.-.. |+-..| =.+|..++++|+..|.+-++++ .+|=++|...+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 2 122122222221 111122 2356788899999998888742 24445555554
No 107
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=65.89 E-value=1.7e+02 Score=32.06 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=51.8
Q ss_pred HHHcCcEEEeccCceeccccCCCCCCeEecccCCc------ccc-cCChhHHHHHHHHHHHHHHHhhhccccccCCCcEE
Q 007390 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI------EFR-TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (605)
Q Consensus 116 a~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~------~~R-~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII 188 (605)
+-..|+.|+.-| |+ .|+|+...-++ +|| ...+.|-++..+|+. .++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHH----HHH------hCCCcee
Confidence 556788888887 65 89999863221 333 234555555444433 344 4566888
Q ss_pred EeccccccCCccccCCc---chHHHHHHHHHHHHhcC
Q 007390 189 LSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (605)
Q Consensus 189 ~~QIENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (605)
+..|.||-.... .|+. ...+..+.++|.+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 888889965321 1221 24566777777766555
No 108
>PRK10785 maltodextrin glucosidase; Provisional
Probab=65.83 E-value=13 Score=43.20 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEE-ceeCC--CCCCcCCee-----eeccchhHHHHHHHHHHcCcEEEecc
Q 007390 71 PDLIQKAKDGGLDVIQT-YVFWN--GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~t-yv~Wn--~hEp~~G~~-----df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.+.|.-+|++|+|+|-. .||=+ .|---...| .|.+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45688899999999996 45532 221111111 24566899999999999999999764
No 109
>PRK09505 malS alpha-amylase; Reviewed
Probab=64.86 E-value=12 Score=44.27 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHHHHHHHHCCCCEEEE-ceeCCCCCCc----CC------------------eeeeccchhHHHHHHHHHHcCcEEEec
Q 007390 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QG------------------NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 70 W~~~l~k~Ka~G~NtV~t-yv~Wn~hEp~----~G------------------~~df~G~~dl~~fl~la~~~GL~Vilr 126 (605)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|..+++.|++.||+||+-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567788999999999985 3543333211 11 113455679999999999999999987
Q ss_pred cCc
Q 007390 127 IGP 129 (605)
Q Consensus 127 ~GP 129 (605)
.=+
T Consensus 312 ~V~ 314 (683)
T PRK09505 312 VVM 314 (683)
T ss_pred ECc
Confidence 643
No 110
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=64.40 E-value=34 Score=37.82 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=67.8
Q ss_pred ecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcC----Ceeeeccc---hhHHHHHHHHHHcCcEEEeccCceec
Q 007390 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 60 iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~----G~~df~G~---~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
-+|+.++.+.-.+.+++++++|++.+-+=--|....... |.+.-+-. .-|..+++.+++.||+.=|+..|.++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 346678888889999999999998777666686542211 33221111 24899999999999999888888765
Q ss_pred cc--cCCCCCCeEecccCCc---c------cccCChhHHHHHHHHHHHHH
Q 007390 133 AE--WNYGGFPVWLKYVPGI---E------FRTDNGPFKAAMHKFTEKIV 171 (605)
Q Consensus 133 aE--w~~GG~P~WL~~~p~~---~------~R~~~~~y~~~~~~~~~~l~ 171 (605)
+. --+-..|.|+...++- . +-..+|...+++...+.+++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 32 1133479999875542 1 22345655555555444443
No 111
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=64.30 E-value=20 Score=30.28 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=32.3
Q ss_pred ceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccE-EEEEEeecC
Q 007390 502 PLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNK-ISLLSTSVG 557 (605)
Q Consensus 502 ~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~-L~ILven~G 557 (605)
..+.....+..+.+.|||..+... .... .+.|..|.|. |.|.|.+-.
T Consensus 27 v~v~a~~~~~~a~v~vng~~~~~~-----~~~~----~i~L~~G~n~~i~i~Vta~d 74 (88)
T PF12733_consen 27 VTVTATPEDSGATVTVNGVPVNSG-----GYSA----TIPLNEGENTVITITVTAED 74 (88)
T ss_pred EEEEEEECCCCEEEEEcCEEccCC-----Ccce----eeEccCCCceEEEEEEEcCC
Confidence 466666667889999999886542 1111 2447889998 999886543
No 112
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=63.91 E-value=58 Score=33.25 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCcCCee-eeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccC
Q 007390 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 148 (605)
Q Consensus 70 W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~-df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p 148 (605)
-++.|+.+.++|++.|+. ...+|..-.- +++ ..++.++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 447899999999999999 4444433110 122 236889999999999986542 3431
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 007390 149 GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (605)
Q Consensus 149 ~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (605)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12445677777777777777777665 32 55666554
No 113
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=63.64 E-value=13 Score=43.16 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=37.3
Q ss_pred HHHHHHHHCCCCEEEE-cee---------------CCCCC-----CcCCeee----ec--cchhHHHHHHHHHHcCcEEE
Q 007390 72 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~t-yv~---------------Wn~hE-----p~~G~~d----f~--G~~dl~~fl~la~~~GL~Vi 124 (605)
+.|.-+|++|+|+|+. .|+ |.+.- |.+ .|- |- ...+|.+|++.|++.||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 343 32221 110 110 10 13689999999999999999
Q ss_pred ecc
Q 007390 125 LRI 127 (605)
Q Consensus 125 lr~ 127 (605)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 114
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=63.63 E-value=11 Score=47.48 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCEEEE-ceeCCCCCCc---CCe-----ee----------ec--cchhHHHHHHHHHHcCcEEEeccC
Q 007390 72 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QGN-----YY----------FQ--DRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~t-yv~Wn~hEp~---~G~-----~d----------f~--G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
+.|.-+|++|+|+|+. .|+=+..|.. .|. |+ |. +..++.++++.|+++||.|||-.=
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4566899999999996 4552222211 110 21 33 667999999999999999998753
No 115
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=60.53 E-value=22 Score=44.99 Aligned_cols=111 Identities=15% Similarity=0.247 Sum_probs=66.4
Q ss_pred eEEECCEEEEEEEE---EecCCCC--CcccHHHHHHHHHHCCCCEEEE-cee-CCC---CCCcCCeee----e----ccc
Q 007390 45 AVIINGQKRILISG---SIHYPRS--TPEMWPDLIQKAKDGGLDVIQT-YVF-WNG---HEPTQGNYY----F----QDR 106 (605)
Q Consensus 45 ~~~~dG~p~~l~sG---~iHy~r~--~~~~W~~~l~k~Ka~G~NtV~t-yv~-Wn~---hEp~~G~~d----f----~G~ 106 (605)
.+.|||++++.+.+ +-..+++ +-+.|++.|..+|++|+|+|-. .++ =.. .=...+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 46666644444333 2234452 4477999999999999999985 344 110 001122222 3 366
Q ss_pred hhHHHHHHHHHHc-CcEEEeccCceeccccCCCCC-CeEecccCCcccccCChhHHH
Q 007390 107 YDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGF-PVWLKYVPGIEFRTDNGPFKA 161 (605)
Q Consensus 107 ~dl~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~-P~WL~~~p~~~~R~~~~~y~~ 161 (605)
.|+.++++.+++. ||++|+-.= |+.-+. =.||.++|+.-.-..+.++|+
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhh
Confidence 7999999999996 999997641 333332 357777776433343444444
No 116
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=60.46 E-value=1.4e+02 Score=30.76 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=49.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCee--eeccc--hhHHHHHHHHHHcCcEEEeccCcee
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~--df~G~--~dl~~fl~la~~~GL~Vilr~GPyi 131 (605)
..+...+.++.+++.||-.=...+-+.+.+. .+.| +|.-. -|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6677889999999999986555555444443 3555 44322 3899999999999999999988877
No 117
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=58.60 E-value=21 Score=42.99 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-eeCC----CCCCcCC-----eeeeccchhHHHHHHHHHHcCcEEEeccCce
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWN----GHEPTQG-----NYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~ty-v~Wn----~hEp~~G-----~~df~G~~dl~~fl~la~~~GL~Vilr~GPy 130 (605)
+-+.+.+.|.-++++|+++|-.- ++=+ .|--..- .-.|.+..++.+|++.|+++||.||+-.=|-
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 44568899999999999999763 3211 1110000 1135578899999999999999999886553
No 118
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=58.33 E-value=41 Score=35.34 Aligned_cols=107 Identities=16% Similarity=0.239 Sum_probs=66.6
Q ss_pred EEEEEEecCCCCCc-ccHH---HHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 54 ILISGSIHYPRSTP-EMWP---DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 54 ~l~sG~iHy~r~~~-~~W~---~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
+-+++..|+..-+. ...+ ++|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 56788877765221 1222 2444433699999888443 3444 7889999999997765445554
Q ss_pred eec---------cccCCCCCCeEecccCCcc-cccCChhHHHHHHHHHHHHHHHhh
Q 007390 130 YVC---------AEWNYGGFPVWLKYVPGIE-FRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 130 yi~---------aEw~~GG~P~WL~~~p~~~-~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
..+ .+|..--+|.|+.+. +. ...+++...+.--++...+++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~--l~~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSR--LEPIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 578777789999862 10 122334455566677777777776
No 119
>PLN02361 alpha-amylase
Probab=57.96 E-value=23 Score=39.15 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEEceeCC---CCCCcCCe-ee----eccchhHHHHHHHHHHcCcEEEecc
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWN---GHEPTQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn---~hEp~~G~-~d----f~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.+.|.-+|++|+++|-..=+.. .|--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4466778999999998753322 12111221 22 4456799999999999999999865
No 120
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=55.72 E-value=19 Score=37.23 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=36.5
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
=...++|++|++.|-. +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|
T Consensus 77 vS~~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 77 ISAEMLKDLGVKYVII----GHSERRQ-YFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred cCHHHHHHCCCCEEEe----CcccccC-ccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 3567899999999998 6666554 222 2233444445569999999999987
No 121
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.22 E-value=70 Score=33.80 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=47.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEce----eCCCC-CCc--CCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYV----FWNGH-EPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv----~Wn~h-Ep~--~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
+.+.-++.++.|...|+|.+..|+ ++.-+ |-. +|.|.= .++.++++.|++.|+.||-.+--.-+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 457889999999999999999875 23222 111 344433 4999999999999999997654333443
No 122
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=54.77 E-value=24 Score=35.49 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=38.0
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
...++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 456899999999988 777776 5444 68899999999999999997
No 123
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.16 E-value=25 Score=45.46 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCe---e----------eeccchhHHHHHHHHHHcCcEEEeccCcee
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN---Y----------YFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~---~----------df~G~~dl~~fl~la~~~GL~Vilr~GPyi 131 (605)
+-+.|.+.|.-+|++|+|+|-.-=++ +..+|. | .|.+..++.+|++.|+++||.|||-.=|-=
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH 831 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNH 831 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 45679999999999999999864222 222221 1 255778999999999999999998765533
No 124
>PRK09875 putative hydrolase; Provisional
Probab=54.08 E-value=1.4e+02 Score=31.67 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=57.8
Q ss_pred eEEEccceEEECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHH
Q 007390 38 SVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (605)
Q Consensus 38 ~v~~d~~~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~ 117 (605)
.+++-+..++++-.+.. +......-..+.-...|+.+|++|.+||= |..+ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHH
Confidence 45566666776653321 11111112344556678899999998873 2222 112479999999999
Q ss_pred HcCcEEEeccCceeccccCCCCCCeEecc
Q 007390 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (605)
Q Consensus 118 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (605)
+-|+.||...|-|... -+|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 9999999999988532 26788774
No 125
>PRK03705 glycogen debranching enzyme; Provisional
Probab=53.78 E-value=22 Score=41.81 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=36.3
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCcC---C-----ee----------eecc-----chhHHHHHHHHHHcCcEEEecc
Q 007390 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----NY----------YFQD-----RYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~t-yv~Wn~hEp~~---G-----~~----------df~G-----~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.|.-+|++|+|+|+. .|+=...++.. | -| .|.. ..++.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 34311111110 0 01 1222 1589999999999999999874
No 126
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=53.61 E-value=25 Score=35.61 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 58999999999999999984322 12678899999999999763
No 127
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.19 E-value=29 Score=42.06 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCC------eee-------eccchhHHHHHHHHHHcCcEEEeccCcee
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG------NYY-------FQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G------~~d-------f~G~~dl~~fl~la~~~GL~Vilr~GPyi 131 (605)
.+-+.+.+.|.-++++|+|+|-.-=+. +..+| ..| |.+..++.+|++.|+++||.|||-.=|.=
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 345668999999999999999863221 11122 112 45678999999999999999998776543
Q ss_pred c
Q 007390 132 C 132 (605)
Q Consensus 132 ~ 132 (605)
+
T Consensus 94 ~ 94 (879)
T PRK14511 94 M 94 (879)
T ss_pred c
Confidence 3
No 128
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=52.70 E-value=26 Score=28.61 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=24.1
Q ss_pred cCCeEEEEECCEEEEEEEcccC--CCeeEEecc
Q 007390 509 AGHALQVFINGQLSGTVYGSLE--NPKLTFSKN 539 (605)
Q Consensus 509 i~D~~~VfVNG~~VGt~~~~~~--~r~~~l~~~ 539 (605)
..|.+.||++++++|+.++... ..+|.|...
T Consensus 26 ~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 26 KDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 4899999999999999987543 356776543
No 129
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.89 E-value=56 Score=34.31 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCC--------CcCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCcee
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHE--------PTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hE--------p~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi 131 (605)
+.+.-++.++++|+.||-+=-+++=..+|. ..-+.|.|+-. -|..++++..++.|+++++.+=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 566778899999999997655554333332 12346776543 3899999999999999998875543
No 130
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=51.76 E-value=1.1e+02 Score=29.20 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc------CCeeeeccchhHHHHHHHHHHcCcEEE-eccCceeccccCCCCC
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT------QGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGF 140 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~------~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~ 140 (605)
+.-++..+.+++.|+..+....+-+...+. +.. .-.....+.+.+++|++.|...+ +.+|. +..
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~-----~~~--- 97 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR-----YPS--- 97 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----ESS---
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----ccc---
Confidence 346677888999999977655443322221 111 11223588999999999999854 55542 000
Q ss_pred CeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCc
Q 007390 141 PVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPV 199 (605)
Q Consensus 141 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~ 199 (605)
......+.-++.+.+.+++++++.+++. |.+.+||..+..
T Consensus 98 ----------~~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 98 ----------GPEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp ----------STTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ----------ccCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 0112334566777788888888887432 456789988754
No 131
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=51.26 E-value=1.2e+02 Score=27.38 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=42.8
Q ss_pred EEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccC-----CCeeEEecceecCC-CccEEEEEEe
Q 007390 481 LWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLE-----NPKLTFSKNVKLRP-GVNKISLLST 554 (605)
Q Consensus 481 vWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~-----~r~~~l~~~i~Lk~-G~N~L~ILve 554 (605)
+-++..|..+.+.. -++.+. .+|...+||||+.|....+... .........+.|.+ +.+.|.|...
T Consensus 48 ~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~ 119 (145)
T PF07691_consen 48 VRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYF 119 (145)
T ss_dssp EEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEE
Confidence 56677777776542 356665 6889999999999988775332 00111222244555 5778888777
Q ss_pred ecC
Q 007390 555 SVG 557 (605)
Q Consensus 555 n~G 557 (605)
+.+
T Consensus 120 ~~~ 122 (145)
T PF07691_consen 120 NRG 122 (145)
T ss_dssp ECS
T ss_pred ECC
Confidence 766
No 132
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=49.80 E-value=27 Score=29.84 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=26.0
Q ss_pred CCCcEEEeccccc-cCCccccC----C-cchHHHHHHHHHH---HHhcCCCcceEEe
Q 007390 183 QGGPIILSQIENE-FGPVEWDI----G-APGKAYAKWAAQM---AVGLNTGVPWVMC 230 (605)
Q Consensus 183 ~gGpII~~QIENE-yg~~~~~~----~-~~~~~y~~~l~~~---~~~~g~~vP~~~~ 230 (605)
+...|.+|+|-|| -++....+ + .....+.+||+++ +|+.+.+.|+..+
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 4457999999999 55322111 1 1235566666665 5678888887543
No 133
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=48.92 E-value=33 Score=36.56 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCC--eeeeccch--hHHHHHHHHHHcCcEEEeccCceec
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G--~~df~G~~--dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
..+.-.+.++++++.||-.=.+.+-|.+.. ..+ .|+|+-.+ |..+||+..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 566678899999999887655544454433 344 77776443 8999999999999999998777763
No 134
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=48.53 E-value=1.4e+02 Score=32.94 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=64.3
Q ss_pred CcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCc----ccccC-ChhHHHHHHHHHHHH
Q 007390 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRTD-NGPFKAAMHKFTEKI 170 (605)
Q Consensus 96 p~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R~~-~~~y~~~~~~~~~~l 170 (605)
+..|.|||+....=+.|++.|++.|...++-+- =..|.|+...-.. ...++ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999998777777899999999999777542 1278888763110 00111 244566777888888
Q ss_pred HHHhhhccccccCCCcEEEeccccccCCcccc--------CC-cchHHHHHHHHHHHHhcCCCcceEEec
Q 007390 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--------IG-APGKAYAKWAAQMAVGLNTGVPWVMCK 231 (605)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~--------~~-~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (605)
+++++++ |=+|=-+-.=||-... +. +. +.-...++.|.....+.|+..-+..|+
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 8877633 3244444455886521 21 11 123557888888888888876555554
No 135
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=48.02 E-value=38 Score=34.89 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 49 dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
++.++.+.+=.+|+.-.-.-.=+=...++|++|++.|-. +|-|.+. -|. +.+.++.+=++.|.++||.+|++.|
T Consensus 52 ~~~~i~vgAQnv~~~~~Ga~TGevS~~mL~d~G~~~vii----GHSERR~-~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 52 EGSKIKVGAQNVSPEDSGAFTGEISAEMLKDAGAKYVII----GHSERRQ-YFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred cCCCeEEEecccccccCCCCcCcCCHHHHHHcCCCEEEe----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 444444333345654321112233466899999999998 7666654 221 3456888889999999999999987
No 136
>PRK14566 triosephosphate isomerase; Provisional
Probab=47.59 E-value=51 Score=34.39 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=48.0
Q ss_pred ECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec-cchhHHHHHHHHHHcCcEEEec
Q 007390 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 48 ~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~-G~~dl~~fl~la~~~GL~Vilr 126 (605)
++|.++.+.+=.+|+.-.-+-.=+-...++|++|++.|-+ +|-|.+. .|. -+..+.+=++.|.++||.+|++
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pIvC 134 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII----GHSERRR---MYGETSNIVAEKFAAAQKHGLTPILC 134 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE----CcccccC---CCCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3454455443345543221112223456899999999988 7666654 243 3456677899999999999999
Q ss_pred cC
Q 007390 127 IG 128 (605)
Q Consensus 127 ~G 128 (605)
.|
T Consensus 135 vG 136 (260)
T PRK14566 135 VG 136 (260)
T ss_pred cC
Confidence 87
No 137
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=47.48 E-value=96 Score=36.83 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCC---CcCC-----ee---e-------e---ccchhHHHHHHHHHHcCcEEEecc
Q 007390 73 LIQKAKDGGLDVIQT-YVFWNGHE---PTQG-----NY---Y-------F---QDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~t-yv~Wn~hE---p~~G-----~~---d-------f---~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.|.-+|++|+|+|.. .|+=...+ ...| -| | | ....+|.+|++.|++.||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 367899999999996 35411111 1111 01 1 2 124689999999999999999875
No 138
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=47.10 E-value=87 Score=31.94 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=54.8
Q ss_pred CCeeeec-cchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhh
Q 007390 98 QGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (605)
Q Consensus 98 ~G~~df~-G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 176 (605)
.|...+. +..++..+++.|++.|++|++.+|= |..+.+-. + ..++. .-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~~-~---------~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFTA-A---------LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcchh-h---------hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3457889999999999999999861 22111100 1 12333 345788888888886
Q ss_pred ccccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHHHHhcC
Q 007390 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (605)
Q Consensus 177 ~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 222 (605)
+++ + ++.|+=|+.... ...-..+++.|++...+.|
T Consensus 98 ~~~---D-----GIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL---D-----GIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC---C-----ceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 554 1 345666664321 1111235555555554443
No 139
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=46.74 E-value=73 Score=34.46 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=60.5
Q ss_pred cceEEEccceEEECCEEEEEEEE--EecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeecc--chhHHH
Q 007390 36 KASVSYDHKAVIINGQKRILISG--SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVR 111 (605)
Q Consensus 36 ~~~v~~d~~~~~~dG~p~~l~sG--~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G--~~dl~~ 111 (605)
...|.+. .+.+.|.+++++.| ++| +++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-
T Consensus 79 ~t~v~~~--~~~ig~~~~~~IAGPCsiE----s~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~ 148 (335)
T PRK08673 79 PTVVKVG--DVEIGGGKPVVIAGPCSVE----SEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKL 148 (335)
T ss_pred CCEEEEC--CEEECCCceEEEEecCccC----CHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHH
Confidence 3344443 36777788888888 222 46677788888999999999999995 3333367775 567877
Q ss_pred HHHHHHHcCcEEEecc
Q 007390 112 FIKLVQQAGLYVHLRI 127 (605)
Q Consensus 112 fl~la~~~GL~Vilr~ 127 (605)
+.+.|++.||.++-.+
T Consensus 149 L~~~~~~~Gl~v~tev 164 (335)
T PRK08673 149 LAEAREETGLPIVTEV 164 (335)
T ss_pred HHHHHHHcCCcEEEee
Confidence 8888999999988775
No 140
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=45.45 E-value=62 Score=25.76 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
..++.++++|+.|++.|-+ .-|. ++. ...+|.+++++.|+.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 4678999999999999987 4443 222 456888999999998764
No 141
>PRK14565 triosephosphate isomerase; Provisional
Probab=45.24 E-value=36 Score=35.02 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeccC
Q 007390 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~-G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
=...++|++|++.+-. +|-|.+. .|. .+..+.+=++.|.++||.+|++.|
T Consensus 76 vS~~mLkd~G~~~vii----GHSERR~---~f~Etd~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 76 ISAKMLKECGCSYVIL----GHSERRS---TFHETDSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred cCHHHHHHcCCCEEEE----CcccccC---cCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 3567899999999988 7766664 243 223333445999999999999997
No 142
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.80 E-value=44 Score=35.55 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=48.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-----cCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceec
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-----~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
..+...+.++++|+.||-.=.+.+-+.++.. .-|.|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4667789999999999875555544333331 2346666533 38999999999999999999877775
No 143
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.26 E-value=53 Score=34.89 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC---cCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceec
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp---~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
.+.-.+.++++++.+|-+=-+.+-+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 346678899999999976555543322221 1234555432 38999999999999999999888875
No 144
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=43.25 E-value=76 Score=33.50 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC----------------cCCeeeeccchhHHHHHHHHHHcCcEEE
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~----Wn~hEp----------------~~G~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
.+.+..++.|..|...++|++..++- |.+--+ ..|.|.-+ |+..+++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 36888999999999999999998876 644311 12344444 99999999999999998
Q ss_pred ecc
Q 007390 125 LRI 127 (605)
Q Consensus 125 lr~ 127 (605)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 665
No 145
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=43.10 E-value=42 Score=36.10 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=54.7
Q ss_pred ecCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccch--hH--HHHHHHHHHcCcEEEeccCceec
Q 007390 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY--DL--VRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 60 iHy~r~---~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~--dl--~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
+|..|+ +.+..++.++++++.||..=...+-+.++. ..+.|.|...+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455553 566788999999999997655554444333 24677766543 77 99999999999999999989987
Q ss_pred cc
Q 007390 133 AE 134 (605)
Q Consensus 133 aE 134 (605)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 146
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=43.04 E-value=80 Score=33.21 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=68.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeecc---chhHHHHHHHHHHcCcEEEeccCceeccccCCCCCC
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFP 141 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G---~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P 141 (605)
..-+..+.-+.-+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+. -|..+|-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhh
Confidence 4567788899999999999999977787622 234567653 4699999999999999988874 23333311
Q ss_pred eEecc-------------cCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEE
Q 007390 142 VWLKY-------------VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (605)
Q Consensus 142 ~WL~~-------------~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII 188 (605)
.=|.+ +.++++=.-+. --+.+-+|+++|++.-++|+|+..=+|++.
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 11111 11222110010 124567889999999998888766666543
No 147
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=42.23 E-value=25 Score=37.52 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcE--EE-ecc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VH-LRI 127 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~--Vi-lr~ 127 (605)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+...+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 59999999999999 6788888889999999985 999999999999996 44 776
No 148
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=42.20 E-value=1.4e+02 Score=29.96 Aligned_cols=91 Identities=8% Similarity=0.070 Sum_probs=65.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeE
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~-G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 143 (605)
..+.+++..++.++++|+..+-+|..... ....|..+ |..|-..-+++|+++|+ .+| -|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEE
Confidence 35789999999999999999999988765 23333443 77899999999999998 233 3444
Q ss_pred ecccCCcccccCChhHHHHHHHHHHHHHHHhhhc
Q 007390 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (605)
Q Consensus 144 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~ 177 (605)
+--+.+. .+..+...+..|++.+...|...
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 4332221 23347788889999988888743
No 149
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=41.93 E-value=1.3e+02 Score=32.53 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=54.8
Q ss_pred ecCCC---CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceec
Q 007390 60 IHYPR---STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 60 iHy~r---~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
+|..| .+.+..++.++++++.+|-.=.+++-|.++. .-+.|.|... -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 55555 3667788999999999987655555555443 3466777654 37899999999999999998889987
No 150
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.60 E-value=45 Score=35.46 Aligned_cols=73 Identities=7% Similarity=0.108 Sum_probs=52.2
Q ss_pred ecCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceecc
Q 007390 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (605)
Q Consensus 60 iHy~r~---~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~a 133 (605)
+|..|. ..+..++.++++++.+|-.=...+-+.+.. ..+.|+|+.. -|..+|++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 344553 566788999999999987554444322222 3456776543 389999999999999999998888863
No 151
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.54 E-value=48 Score=35.57 Aligned_cols=68 Identities=6% Similarity=0.043 Sum_probs=50.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceeccc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 134 (605)
+.+.-++.++++++.||..=...+-+.+ ....+.|+|+-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 4666788999999999876555444322 234566777543 2889999999999999999999999753
No 152
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.50 E-value=30 Score=37.43 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=45.8
Q ss_pred ecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 60 iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
-++ |.+...=....+.++++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|++.||-+++.+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 55444444457889999999999999999543310 001122489999999999999988864
No 153
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=41.47 E-value=45 Score=41.61 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHcCcEEEeccC
Q 007390 107 YDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~G 128 (605)
.+|.++|+.|+++||.|||-.=
T Consensus 555 ~EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecc
Confidence 6899999999999999998753
No 154
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=41.46 E-value=98 Score=35.94 Aligned_cols=47 Identities=23% Similarity=0.226 Sum_probs=33.4
Q ss_pred CeEEEEECCEEEEEEEcccC---CCeeEEecceecCCCccEEEEEEeecC
Q 007390 511 HALQVFINGQLSGTVYGSLE---NPKLTFSKNVKLRPGVNKISLLSTSVG 557 (605)
Q Consensus 511 D~~~VfVNG~~VGt~~~~~~---~r~~~l~~~i~Lk~G~N~L~ILven~G 557 (605)
....|+|||+.+++..-... ...++++.+-.|..|.|+|.|.+..--
T Consensus 63 S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~~~~~ 112 (605)
T PF03170_consen 63 SQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIKGFNRLTFEFIGHY 112 (605)
T ss_pred ceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcCCceEEEEEEEecc
Confidence 47899999999999853222 234555555457889999998766544
No 155
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=41.45 E-value=74 Score=37.17 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=73.5
Q ss_pred EEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCce
Q 007390 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (605)
Q Consensus 51 ~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPy 130 (605)
++-+.+++..|+.+.+.+.=-++|.+-.++|.+-+-|-.+++ -+ .+.+|++.|++.++.||.-+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd----------~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYD----------EE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCC----------HH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 455788999987765544444566666789999999955544 33 78899999988888888777773
Q ss_pred ec--------cccCCCCCCeEecccCCcccc-c-CChhHHHHHHHHHHHHHHHhh
Q 007390 131 VC--------AEWNYGGFPVWLKYVPGIEFR-T-DNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 131 i~--------aEw~~GG~P~WL~~~p~~~~R-~-~~~~y~~~~~~~~~~l~~~i~ 175 (605)
.. .+|..--+|.|+.+. ++ . +...++++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~----l~~~~d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRER----MRAVEDKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHH----HHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 32 235555579988862 21 1 224566777777777777666
No 156
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=40.93 E-value=1.1e+02 Score=35.62 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=43.5
Q ss_pred EeecCCCcccccCCCCceEEEec--------cCCeEEEEECCEEEEEEEcc----cCCCeeEEecceecCCCccEEEEEE
Q 007390 486 DVNIDSNEGFLKNGQDPLLTIWS--------AGHALQVFINGQLSGTVYGS----LENPKLTFSKNVKLRPGVNKISLLS 553 (605)
Q Consensus 486 ~v~l~~~~~~~~~g~~~~L~l~~--------i~D~~~VfVNG~~VGt~~~~----~~~r~~~l~~~i~Lk~G~N~L~ILv 553 (605)
.|.+|.+- +.+.+..+.|.|.- -.-...|+|||++|++..-. .....+++..+-.+..|.|+|++..
T Consensus 329 ~f~lP~dl-~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~iP~~~~~~~N~l~~~f 407 (605)
T PF03170_consen 329 NFRLPPDL-FAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTPADGAGFDRYTVSIPRLLLPGRNQLQFEF 407 (605)
T ss_pred EeeCCccc-cccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCCCCCCccceeEEecCchhcCCCcEEEEEE
Confidence 34555432 23344455555432 24578899999999997543 2234455555544678899999877
Q ss_pred eecC
Q 007390 554 TSVG 557 (605)
Q Consensus 554 en~G 557 (605)
.-..
T Consensus 408 ~l~~ 411 (605)
T PF03170_consen 408 DLPP 411 (605)
T ss_pred Eeec
Confidence 6664
No 157
>PLN02429 triosephosphate isomerase
Probab=40.64 E-value=45 Score=35.78 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=35.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeccC
Q 007390 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~-G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
...++|++|++.|-+ +|-|.+. .|. -+..+.+=++.|.++||.+|+++|
T Consensus 139 Sa~mLkd~Gv~~Vii----GHSERR~---~f~Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL----GHSERRH---VIGEKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe----CccccCC---CCCcCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 456899999999988 7666654 243 122333334459999999999997
No 158
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=40.39 E-value=51 Score=35.07 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=41.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeC---CCCCCcCCee--------eeccchhHHHHHHHHHHcCcEEEecc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFW---NGHEPTQGNY--------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~W---n~hEp~~G~~--------df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.+..-.++++.+|..|+|++-.-+== ++.=|....+ .|- |+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 46667889999999999988642210 1111111111 233 99999999999999999996
No 159
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=39.48 E-value=58 Score=31.88 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=54.7
Q ss_pred EEEecCCCCC-----cccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeee--ecc-chhHHHHHHHHHHcCcEEEeccC
Q 007390 57 SGSIHYPRST-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYY--FQD-RYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 57 sG~iHy~r~~-----~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~d--f~G-~~dl~~fl~la~~~GL~Vilr~G 128 (605)
-|.+||++.. .++.+.-++.++..+... ...|--.|..++.+. .+- ...+.+|++..+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3999998743 556777888888765432 112333343333322 111 14678999999999999999888
Q ss_pred ceec----ccc---CCCCCCeEeccc
Q 007390 129 PYVC----AEW---NYGGFPVWLKYV 147 (605)
Q Consensus 129 Pyi~----aEw---~~GG~P~WL~~~ 147 (605)
++-. +.. +....|.|+-..
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 7521 111 145789999764
No 160
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.38 E-value=40 Score=34.44 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcC----CeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~----G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.+.|+++|+.+.+.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 35667789999999999966 22222111 111111 1368899999999999999997
No 161
>PTZ00333 triosephosphate isomerase; Provisional
Probab=38.04 E-value=61 Score=33.65 Aligned_cols=50 Identities=24% Similarity=0.191 Sum_probs=39.8
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
...++|++|++.|-+ +|-|.+. .| =+.+.++.+=++.|.++||.+|++.|
T Consensus 81 S~~mL~d~G~~~vii----GHSERR~-~f-~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 81 SAEMLKDLGINWTIL----GHSERRQ-YF-GETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-cC-CCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 6666554 22 13456888999999999999999997
No 162
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=37.98 E-value=69 Score=34.64 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=65.6
Q ss_pred EEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHH
Q 007390 84 VIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAM 163 (605)
Q Consensus 84 tV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~ 163 (605)
.|.+.|+|+++--+. -=...++.|+++|+.|+-- |.-||+ +-+.|+.. + +.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~---l-L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED---F-LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH---H-hcc-Cc---ccc
Confidence 478889999853221 0026789999999999743 234665 33456543 1 221 11 123
Q ss_pred HHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHHHHhcC--CCcceEE
Q 007390 164 HKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN--TGVPWVM 229 (605)
Q Consensus 164 ~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g--~~vP~~~ 229 (605)
.++.++|++..+.+.+ + | +.+-+|+..+... ..+.-.+|++.|++.+++.+ ..|-|+-
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5777888888875443 2 3 7778888873110 01123457777777776643 3344543
No 163
>PRK09267 flavodoxin FldA; Validated
Probab=37.93 E-value=2.4e+02 Score=26.59 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=48.8
Q ss_pred ECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE
Q 007390 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 48 ~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
++.-..++++...|+...++..|.+-+.+++...++-..+.+|= ......-.-.| ..-+..+.+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34556688999999877778899999998887777766777773 22111100111 2245667778888897765
No 164
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=37.29 E-value=79 Score=37.21 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=54.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEE---cee---C--CCCCCcCCeeee---------ccchhHHHHHHHHHHcCcEEEeccC
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQT---YVF---W--NGHEPTQGNYYF---------QDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~t---yv~---W--n~hEp~~G~~df---------~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
.+..|+ .++.+|+++|=+ |.. | .+-.-..|-||- ....|++++++.|++.||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 466665 588899999975 222 2 222223455663 2346999999999999999996543
Q ss_pred --------ceeccccCCCCCCeEe
Q 007390 129 --------PYVCAEWNYGGFPVWL 144 (605)
Q Consensus 129 --------Pyi~aEw~~GG~P~WL 144 (605)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3788999999999998
No 165
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=36.96 E-value=1.4e+02 Score=26.89 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=39.2
Q ss_pred EEEEEEeecCCCcccccCCCCceEEEeccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCC-ccEEEEEEe
Q 007390 481 LWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPG-VNKISLLST 554 (605)
Q Consensus 481 vWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G-~N~L~ILve 554 (605)
+-++..|..+.+. .-++.+. .+|.+.+||||+.|-...+....+ ......+.|.+| .+.|.|.-.
T Consensus 46 ~~~~g~i~~~~~G-------~y~f~~~-~~~~~~l~Idg~~vid~~~~~~~~-~~~~~~v~l~~g~~~~i~v~y~ 111 (136)
T smart00758 46 VRWTGYLKPPEDG-------EYTFSIT-SDDGARLWIDGKLVIDNWGKHEAR-PSTSSTLYLLAGGTYPIRIEYF 111 (136)
T ss_pred EEEEEEEECCCCc-------cEEEEEE-cCCcEEEEECCcEEEcCCccCCCc-cccceeEEEeCCcEEEEEEEEE
Confidence 5667777776543 2577774 588899999999998654322100 111123456666 566666554
No 166
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=36.56 E-value=3.6e+02 Score=29.09 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------cCC------eeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQG------NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~----Wn~hEp------~~G------~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+.+..++.|..|-...+|+...++- |.+--+ +.| .|.- .|+..+++.|++.|+.||..+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCCEEEEec
Confidence 5889999999999999999998752 444322 123 3433 499999999999999999765
No 167
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=36.35 E-value=16 Score=31.13 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHH
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~ 118 (605)
..+..|-.-+|.+-. .||.|..|||. +|.+||++|-|
T Consensus 19 ls~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alk 55 (92)
T PF02228_consen 19 LSTHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALK 55 (92)
T ss_dssp STHHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHc
Confidence 456678888887754 48999999999 99999999987
No 168
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=36.10 E-value=1.3e+02 Score=26.69 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=44.5
Q ss_pred ccEEEEEEEeecCCCcccccCCCCceEEEeccCC--eEEEEECC---EEEEEEEccc--CCCee-EEecceecCCCccEE
Q 007390 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH--ALQVFING---QLSGTVYGSL--ENPKL-TFSKNVKLRPGVNKI 549 (605)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~g~~~~L~l~~i~D--~~~VfVNG---~~VGt~~~~~--~~r~~-~l~~~i~Lk~G~N~L 549 (605)
-+++=|.. |+++... ....++++..... ...++||| +.+++..-.. .-..| ++...+.|++|+|+|
T Consensus 31 G~~~~~~~-Vd~~~~g-----~y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i 104 (125)
T PF03422_consen 31 GDWIEYNN-VDVPEAG-----TYTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTI 104 (125)
T ss_dssp TTEEEEEE-EEESSSE-----EEEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEE
T ss_pred CCEEEEEE-EeeCCCc-----eEEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEE
Confidence 45666663 6665443 1134566666544 78999999 9988875311 11121 233446788899999
Q ss_pred EEEEeecC
Q 007390 550 SLLSTSVG 557 (605)
Q Consensus 550 ~ILven~G 557 (605)
.|....-.
T Consensus 105 ~l~~~~~~ 112 (125)
T PF03422_consen 105 YLVFNGGD 112 (125)
T ss_dssp EEEESSSS
T ss_pred EEEEECCC
Confidence 88666544
No 169
>PRK15492 triosephosphate isomerase; Provisional
Probab=35.95 E-value=74 Score=33.16 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
=...++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|+++|
T Consensus 85 vSa~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 85 ISPLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CCHHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 3456899999999998 6666654 332 3345667788999999999999987
No 170
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=35.75 E-value=75 Score=32.99 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=46.8
Q ss_pred CEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeccC
Q 007390 50 GQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 50 G~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~-G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
| ++.+..=.+|+...-.-.=+-...++|++|++.|-+ +|-|.+. .|. -+..+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~---~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL---YFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc---ccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 6 444444446654321111223456899999999988 7766654 343 234566788999999999999987
No 171
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=35.59 E-value=67 Score=29.96 Aligned_cols=59 Identities=27% Similarity=0.443 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHcCcEEEeccCceeccccC-CCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCC
Q 007390 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN-YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGG 185 (605)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~GPyi~aEw~-~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gG 185 (605)
.||.-||++|++.|+.|++=.-| +++.|- +-|+| ++.-++++++|-.+++ ++|-
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~------~~gf 90 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLK------SQGF 90 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHH------TTT-
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHH------HCCC
Confidence 39999999999999998765544 455553 22211 3455778888888887 3455
Q ss_pred cEEEe
Q 007390 186 PIILS 190 (605)
Q Consensus 186 pII~~ 190 (605)
+|+=+
T Consensus 91 ~v~D~ 95 (130)
T PF04914_consen 91 NVADF 95 (130)
T ss_dssp -EEE-
T ss_pred EEEec
Confidence 55533
No 172
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=35.29 E-value=51 Score=36.49 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEE-ceeC---CCCCCcCCe---e--eeccchhHHHHHHHHHHcCcEEEecc
Q 007390 72 DLIQKAKDGGLDVIQT-YVFW---NGHEPTQGN---Y--YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~t-yv~W---n~hEp~~G~---~--df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+.|.-+|.+|+++|=+ .++= ..|--..-. . .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888899999999954 2221 122111000 0 47778899999999999999999753
No 173
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=34.41 E-value=57 Score=33.56 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=31.7
Q ss_pred EECCEEEEEEEEEecCCCC-CcccHHHHHHHHHHCCCCEEE
Q 007390 47 IINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQ 86 (605)
Q Consensus 47 ~~dG~p~~l~sG~iHy~r~-~~~~W~~~l~k~Ka~G~NtV~ 86 (605)
.+.|++...++|..|+... ...+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4689999999999997663 344447789999999997654
No 174
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.82 E-value=77 Score=33.96 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=51.3
Q ss_pred ecCCC---CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceecc
Q 007390 60 IHYPR---STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (605)
Q Consensus 60 iHy~r---~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~a 133 (605)
+|..| .+.+...+.++++++.||-.=...+-+.+.. .-+.|+|.-. -|..++++..++.|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 45555 2556678899999999987544433333222 3445666543 378999999999999999998888863
No 175
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=33.67 E-value=84 Score=33.06 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=43.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC--cCC--eeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp--~~G--~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4677899999999999999999875432111 112 2332 378899999999999987764
No 176
>PRK14567 triosephosphate isomerase; Provisional
Probab=33.61 E-value=85 Score=32.62 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
...++|++|++.|-+ .|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 77 SARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999988 6666654 222 3345677788999999999999987
No 177
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.58 E-value=55 Score=33.44 Aligned_cols=60 Identities=20% Similarity=0.073 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeccC
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~-G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
+.+++.++.++++|++.|.+.-+-...++.... .++ -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEE-TRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHH-HHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 457888999999999999863110000111100 011 013678889999999999999873
No 178
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=33.33 E-value=64 Score=33.44 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCCEEEEceeCC--CCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWN--GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn--~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6788999999999987754310 111111223444 666789999999998653
No 179
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=33.06 E-value=78 Score=31.51 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=38.5
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeee---ccc--hhHHHHHHHHHHcCcEEEeccCceec
Q 007390 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYF---QDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 62 y~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df---~G~--~dl~~fl~la~~~GL~Vilr~GPyi~ 132 (605)
+.|+..++--..-+.+|+.||.++-.--.=..|.... |-+ .|. +++.+ + +..-++|+||||..|
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSr--FlY~k~KGEvE~~v~e---L--~F~~~~i~RPG~ll~ 171 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSR--FLYMKMKGEVERDVIE---L--DFKHIIILRPGPLLG 171 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccc--eeeeeccchhhhhhhh---c--cccEEEEecCcceec
Confidence 4578899999999999999998765432233333222 221 121 22211 1 223358999999887
No 180
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.98 E-value=72 Score=35.24 Aligned_cols=70 Identities=14% Similarity=0.296 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeccCceeccccC
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 136 (605)
..+...+.++.+++.|+-.=...+-..+.. ..+.|.|+.. -|...+++.+++.|+++++..-|+|+-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 466778999999999997666554433222 4445555433 289999999999999999999898875543
No 181
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.90 E-value=96 Score=23.83 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEE
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~V 123 (605)
|..-.+.+.-+.+.|+|.+.++. +...+.....+.|.=+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 45567888899999999998876 3333234455555432 4889999999999765
No 182
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=32.79 E-value=1.5e+02 Score=35.72 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=32.7
Q ss_pred CCeEEEEECCEEEEEEEcc----cCCCeeEEecceecCCCccEEEEEEeecC
Q 007390 510 GHALQVFINGQLSGTVYGS----LENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (605)
Q Consensus 510 ~D~~~VfVNG~~VGt~~~~----~~~r~~~l~~~i~Lk~G~N~L~ILven~G 557 (605)
.....|+|||++||+..-. ......+++.+..+..|.|+|++.....-
T Consensus 114 ~S~L~V~lNg~~v~s~pL~~~~~~~~~~~~i~IP~~l~~g~N~L~~~~~~~~ 165 (756)
T PRK11114 114 LSHLKVYLNGELMGTLPLDKEQLGKKVLAQLPIDPRFITDFNRLRLEFIGHY 165 (756)
T ss_pred CCeEEEEECCEEeEEEecCcccCCCcceeEEecCHHHcCCCceEEEEEecCC
Confidence 4688999999999988422 11234455554446689999999866443
No 183
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=32.70 E-value=2.4e+02 Score=31.47 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=57.3
Q ss_pred ceEEECCEEEEEEEEEecCCCC---CcccHHHHHHHHHHCCCCE--E--E-EceeCCCCCCcCCeeeeccchhHHHHHHH
Q 007390 44 KAVIINGQKRILISGSIHYPRS---TPEMWPDLIQKAKDGGLDV--I--Q-TYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (605)
Q Consensus 44 ~~~~~dG~p~~l~sG~iHy~r~---~~~~W~~~l~k~Ka~G~Nt--V--~-tyv~Wn~hEp~~G~~df~G~~dl~~fl~l 115 (605)
++..+++.-|+++.+.-+-++. .++.-+...+.+++.|++. | . .|. -|+-.|.+..++++ ..-+.+-|+.
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~r 226 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQR 226 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHH
Confidence 4456777888889888776653 3344555667788888863 2 2 233 67777777766665 3467777999
Q ss_pred HHHcCcE-EEeccC
Q 007390 116 VQQAGLY-VHLRIG 128 (605)
Q Consensus 116 a~~~GL~-Vilr~G 128 (605)
|++.|.. |++-||
T Consensus 227 A~~LGa~~VV~HPG 240 (413)
T PTZ00372 227 CEQLGIKLYNFHPG 240 (413)
T ss_pred HHHcCCCEEEECCC
Confidence 9999998 678887
No 184
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.65 E-value=1.1e+02 Score=33.28 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.|...++.+++.|++.|..+...-.-....+. .-...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~------~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK------IVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc------cCCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987764322221111122 123588999999999998764
No 185
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=32.54 E-value=79 Score=28.44 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=25.0
Q ss_pred eEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEe
Q 007390 512 ALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLST 554 (605)
Q Consensus 512 ~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILve 554 (605)
.-.|||||+++|++.. ..|.. +.+++|+++|+...+
T Consensus 42 ~~~v~vdg~~ig~l~~----g~y~~---~~v~pG~h~i~~~~~ 77 (117)
T PF11008_consen 42 KPDVYVDGELIGELKN----GGYFY---VEVPPGKHTISAKSE 77 (117)
T ss_pred cceEEECCEEEEEeCC----CeEEE---EEECCCcEEEEEecC
Confidence 3458999999999653 23443 236889988887444
No 186
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.26 E-value=91 Score=33.59 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=50.0
Q ss_pred ecCCCC---CcccHHHHHHHHHHCCCCEEEEce----------eCCCCCC---------cCCeeeecc-c--hhHHHHHH
Q 007390 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEP---------TQGNYYFQD-R--YDLVRFIK 114 (605)
Q Consensus 60 iHy~r~---~~~~W~~~l~k~Ka~G~NtV~tyv----------~Wn~hEp---------~~G~~df~G-~--~dl~~fl~ 114 (605)
+|..|. ..+.-++.++++++.||..=-+++ .|+...- .-+.++|.. . -|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 565663 456778899999999997655544 2442211 113333431 1 28999999
Q ss_pred HHHHcCcEEEeccCceec
Q 007390 115 LVQQAGLYVHLRIGPYVC 132 (605)
Q Consensus 115 la~~~GL~Vilr~GPyi~ 132 (605)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 187
>PLN02561 triosephosphate isomerase
Probab=31.58 E-value=96 Score=32.21 Aligned_cols=69 Identities=9% Similarity=-0.046 Sum_probs=46.1
Q ss_pred EEEEEE-ecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 54 ILISGS-IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 54 ~l~sG~-iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
+.++++ +|+...-+-.=+=...++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 60 i~vgAQnv~~~~~Ga~TGevS~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 60 FQVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVIL----GHSERRA-LLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CeEEeccccCcCCCCccCcCCHHHHHHcCCCEEEE----CcccccC-ccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 334444 4543322222233567899999999998 7666665 221 2345677778999999999999997
No 188
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.51 E-value=3.4e+02 Score=28.00 Aligned_cols=83 Identities=8% Similarity=0.036 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCCCCCeEecccC
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYVP 148 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~p 148 (605)
.+.++.+++.|+++|+.++-.. +--........+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSP----RWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCc----cccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 5689999999999999965321 110111111237788889999998863 33334553
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 149 GIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 149 ~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
+.+-+.|+.-++..-+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22344567777776666666665554
No 189
>PLN02784 alpha-amylase
Probab=31.51 E-value=1.1e+02 Score=37.37 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCcCC--eee-------eccchhHHHHHHHHHHcCcEEEecc
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G--~~d-------f~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.+.+.-++++|+++|-..=+-....+ .| .+| |....+|..+++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677889999999987533221111 11 122 3335799999999999999999875
No 190
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.40 E-value=59 Score=33.06 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+..++.++.++++|+.+|.+...+......+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 447888999999999999764332211111111100112466778889999999999987
No 191
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.37 E-value=2.6e+02 Score=28.62 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=56.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCc-CCeee---e-ccchhHHHHHHHHHHcCcEEEeccCceeccccCCCC
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYY---F-QDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGG 139 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~-~G~~d---f-~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG 139 (605)
+.++.-+..-+.+++.|+.....-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 4566777778888999998765411 112111 01000 0 0112577889999999998664321
Q ss_pred CCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccC
Q 007390 140 FPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (605)
Q Consensus 140 ~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg 197 (605)
.+.|.. ..++...+.+...++.|++..+++ | |-+.|||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 111111 122344445555667777766632 3 4567888543
No 192
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.16 E-value=2e+02 Score=31.05 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCC----------------------------CcCCeeeeccchhHHHHH
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PTQGNYYFQDRYDLVRFI 113 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~----Wn~hE----------------------------p~~G~~df~G~~dl~~fl 113 (605)
+.+..++.|..|...++|+...++. |.+-- +..|.|.- .|+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHHH
Confidence 5889999999999999999998762 32111 11244443 4999999
Q ss_pred HHHHHcCcEEEecc
Q 007390 114 KLVQQAGLYVHLRI 127 (605)
Q Consensus 114 ~la~~~GL~Vilr~ 127 (605)
+.|++.|+.||..+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999765
No 193
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=30.93 E-value=1.7e+02 Score=27.34 Aligned_cols=91 Identities=14% Similarity=0.214 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeee-ccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEe
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df-~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 144 (605)
.+.+.+..++.++++|+..+-+|.....+. ......+ .|..|=..-+..|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 468899999999999999999988772221 1111122 2668888999999999983 2 344444
Q ss_pred cccCCcccccCChhHHHHHHHHHHHHHHHhhh
Q 007390 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (605)
Q Consensus 145 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 176 (605)
--+ .-..+..+...+..|++.+...|..
T Consensus 100 avD----~d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVD----YDATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGG
T ss_pred Eee----cCCCchhhhhHHHHHHHHHHHHHhh
Confidence 322 2225667778888888888888874
No 194
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=30.90 E-value=1.9e+02 Score=31.02 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=51.9
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCc
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI 150 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~ 150 (605)
...+...++.|.+||=. +.+- .=-||..++.+.+++.||.++...|+|.-+.|+ .|+...|
T Consensus 51 ~~e~~~~~a~Gg~TIVD--------~T~~----~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~-- 111 (316)
T COG1735 51 IAELKRLMARGGQTIVD--------ATNI----GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP-- 111 (316)
T ss_pred HHHHHHHHHcCCCeEee--------CCcc----ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--
Confidence 34566777789888754 2210 012699999999999999999999999987775 6665433
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhh
Q 007390 151 EFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 151 ~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
++.+.+.+++.++
T Consensus 112 ------------i~~~ae~~v~ei~ 124 (316)
T COG1735 112 ------------IEELAEFVVKEIE 124 (316)
T ss_pred ------------HHHHHHHHHHHHH
Confidence 4555555666665
No 195
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=30.47 E-value=1e+02 Score=34.62 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=45.6
Q ss_pred ecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 60 iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.-|.+.|.+.-++.++++.+.|++.|+++++-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 44666777788889999999999999998876643 268889999999999876553
No 196
>PLN02877 alpha-amylase/limit dextrinase
Probab=30.22 E-value=1e+02 Score=38.07 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEecc
Q 007390 107 YDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~ 127 (605)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999875
No 197
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=29.96 E-value=4.7e+02 Score=27.72 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=79.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEec
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (605)
.-+..+.+|+.+|.-+. .|++|- +..+-|+.++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 35678889999999888 999973 233478899999999999999875 333
Q ss_pred ccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHHHHhcCCCc
Q 007390 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (605)
Q Consensus 146 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (605)
. ++ ...+++ .++..+. +. ..=..|-.+-|.||-=.-.+....--.+|+...|....+.|.++
T Consensus 111 d--d~---------~~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--DI---------HDAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--ch---------hhhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 11 112222 3333333 21 11246888999999532111111123569999999999999999
Q ss_pred ceEEecC
Q 007390 226 PWVMCKQ 232 (605)
Q Consensus 226 P~~~~~~ 232 (605)
|+.+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9888765
No 198
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=29.83 E-value=75 Score=32.72 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eccCceecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~GPyi~a 133 (605)
+.-.+.++++|+.|+ -|+.+| +|.+ ..|+.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 344667888888888 455544 5655 66888899998866 999999765
No 199
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=28.16 E-value=77 Score=32.42 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=56.3
Q ss_pred EEEEEEEecCCC-CCcccHHHHHHHHHHCCCCEEEEceeCCCCCC-----------cCCeeeeccchhHHHHHHHHHHcC
Q 007390 53 RILISGSIHYPR-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----------TQGNYYFQDRYDLVRFIKLVQQAG 120 (605)
Q Consensus 53 ~~l~sG~iHy~r-~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-----------~~G~~df~G~~dl~~fl~la~~~G 120 (605)
..+..|+-+..| ++.+.|.+.++++++.|++.|-+ -.-.|. .+...++.|..+|..++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~---g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLT---GGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEE---echhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 333444445445 89999999999999888776643 222221 234567888889999999999999
Q ss_pred cEEEeccCceecc
Q 007390 121 LYVHLRIGPYVCA 133 (605)
Q Consensus 121 L~Vilr~GPyi~a 133 (605)
+.|-...||.--|
T Consensus 201 l~I~~Dsg~~HlA 213 (279)
T cd03789 201 LVVTNDSGPMHLA 213 (279)
T ss_pred EEEeeCCHHHHHH
Confidence 9998888875444
No 200
>PRK06703 flavodoxin; Provisional
Probab=28.03 E-value=2.7e+02 Score=25.77 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=60.7
Q ss_pred ECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 48 ~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+..-..++++-..+-.-.+|..+.+-+..++..-++.....+|-...-. |. ........+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 3444556665544433445667788888887766665555566321110 11 023455667778899999887764
Q ss_pred CceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhh
Q 007390 128 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 128 GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
.. ++...++..-+++.++|.++|++.++
T Consensus 121 --~~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 --LK------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred --eE------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 11112234677888899888887766
No 201
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=27.91 E-value=98 Score=37.92 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHcCcEEEecc
Q 007390 107 YDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~ 127 (605)
.++.++++.|++.||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999865
No 202
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=27.88 E-value=53 Score=33.81 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=43.0
Q ss_pred EecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 59 ~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
.+|+.-.-+-.=+=...++|++|++.|-. +|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 62 nv~~~~~Ga~TGevS~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 62 NVSPEDSGAFTGEVSAEMLKDLGCKYVII----GHSERRQ-YFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp S-BSSSSBS-TTHHBHHHHHHTTESEEEE----SCHHHHH-HST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred cccchhhcccHHHhHHHHHHHhhCCEEEe----ccccccC-ccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 35654322222344567899999999988 6665542 111 4566899999999999999999987
No 203
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.75 E-value=1.5e+02 Score=30.92 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=40.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vil 125 (605)
.|.+.=++.++++.+.|+..|+++++.|. + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45556788999999999999999888664 2 3788999999999998775
No 204
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=27.64 E-value=47 Score=26.99 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=11.4
Q ss_pred EEECCEEEEEEEc
Q 007390 515 VFINGQLSGTVYG 527 (605)
Q Consensus 515 VfVNG~~VGt~~~ 527 (605)
|||||..+|.+..
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999999863
No 205
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=27.46 E-value=3.6e+02 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHH
Q 007390 163 MHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQM 217 (605)
Q Consensus 163 ~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~ 217 (605)
+.+-+.+++..++ ..+.++|.+. ||.|.-.-.+++..+.|++.+-.+
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viVs--nEvG~g~vp~~~~~r~f~d~lG~l 147 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILVS--NEVGLGVVPENALGRRFRDELGRL 147 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEEE--CCcCCCCCCCCHHHHHHHHHHHHH
Confidence 3444555666666 3456888874 999864333555678888766554
No 206
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.95 E-value=1.3e+02 Score=29.59 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCEEE-----EceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEec
Q 007390 73 LIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~-----tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr 126 (605)
....+++.|+..|= |-|+|+--+.+| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35678999999885 678999999998 8999999999999998764
No 207
>PRK04302 triosephosphate isomerase; Provisional
Probab=26.87 E-value=1.2e+02 Score=30.29 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=42.3
Q ss_pred ecCCCCCcccH--HHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 60 IHYPRSTPEMW--PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 60 iHy~r~~~~~W--~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
.|+....+... +..++.+|++|++.|-+ .+-|.. -.|+ .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 57665433322 34589999999999987 333322 2344 6889999999999999998753
No 208
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.45 E-value=2.3e+02 Score=22.24 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEcee-CCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVF-WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~-Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
|..-.+.++.+.+.|+|..+.+.. ....+...-.+.+++ .+.+.+++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 345667888899999999999764 111111122445555 566799999999997654
No 209
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=26.39 E-value=1.5e+02 Score=31.36 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=56.2
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcE--EEeccCc--------eeccccCCCCCCe
Q 007390 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VHLRIGP--------YVCAEWNYGGFPV 142 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~--Vilr~GP--------yi~aEw~~GG~P~ 142 (605)
.|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.|+. |+.-+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 455555788887777333 4445 889999999999954 5555555 33 6777788999
Q ss_pred EecccCCcccccCC-hhHHHHHHHHHHHHHHHhh
Q 007390 143 WLKYVPGIEFRTDN-GPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 143 WL~~~p~~~~R~~~-~~y~~~~~~~~~~l~~~i~ 175 (605)
|+.+. +.--.++ +..+++--++..++++.+.
T Consensus 234 ~l~~~--l~~~~d~~~~~~~~Gi~~a~e~i~~L~ 265 (296)
T PRK09432 234 WMAKM--FDGLDDDAETRKLVGASIAMDMVKILS 265 (296)
T ss_pred HHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99862 1111233 3345555567777777666
No 210
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=26.33 E-value=2.4e+02 Score=32.72 Aligned_cols=72 Identities=25% Similarity=0.476 Sum_probs=50.0
Q ss_pred CCEEEEEEEEEec--CCC-CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcC---------CeeeeccchhHHHHHHHH
Q 007390 49 NGQKRILISGSIH--YPR-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---------GNYYFQDRYDLVRFIKLV 116 (605)
Q Consensus 49 dG~p~~l~sG~iH--y~r-~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~---------G~~df~G~~dl~~fl~la 116 (605)
+|++. .++|-+- |-| |++|+=++.+++++.+|++ ||.. -|.. --|+-+-..-|..+|..|
T Consensus 12 ~g~r~-fiCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlY----APKDDyKHR~~WRElY~vEEa~~L~~Li~aA 83 (891)
T KOG3698|consen 12 VGNRK-FICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLY----APKDDYKHRSLWRELYNVEEATYLRNLIEAA 83 (891)
T ss_pred cccce-eEEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeee----cccchhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34443 4566655 778 8999999999999999999 5542 1221 123333344788899999
Q ss_pred HHcCcEEEeccC
Q 007390 117 QQAGLYVHLRIG 128 (605)
Q Consensus 117 ~~~GL~Vilr~G 128 (605)
+++++..+-.+.
T Consensus 84 ke~~i~F~YAiS 95 (891)
T KOG3698|consen 84 KENNINFVYAIS 95 (891)
T ss_pred HhcCceEEEEcC
Confidence 999998775543
No 211
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=26.20 E-value=44 Score=33.36 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=52.4
Q ss_pred CCEEE-EEEEEEecCC-CCCcccHHHHHHHHHHCCCCEEEEceeCCCCC--------CcCC----eeeeccchhHHHHHH
Q 007390 49 NGQKR-ILISGSIHYP-RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE--------PTQG----NYYFQDRYDLVRFIK 114 (605)
Q Consensus 49 dG~p~-~l~sG~iHy~-r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hE--------p~~G----~~df~G~~dl~~fl~ 114 (605)
.++++ .+.-|.-+.. |+|.+.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 34444 3444444444 489999999999999998 55667787666 1232 588889999999999
Q ss_pred HHHHcCcEEEeccCc
Q 007390 115 LVQQAGLYVHLRIGP 129 (605)
Q Consensus 115 la~~~GL~Vilr~GP 129 (605)
+.+...+.|-.-.||
T Consensus 180 li~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 180 LISRADLVIGNDTGP 194 (247)
T ss_dssp HHHTSSEEEEESSHH
T ss_pred HHhcCCEEEecCChH
Confidence 999999998888876
No 212
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.17 E-value=79 Score=31.91 Aligned_cols=59 Identities=12% Similarity=-0.059 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCC-CcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hE-p~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
+.+++.++.++++|..+|.+-.-+..-+ +.+-.+. .-...+.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5678889999999999998632221000 0110010 012357888899999999999987
No 213
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=25.94 E-value=2.2e+02 Score=31.89 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=59.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-eeCCCC--CC--cCCeeee-----ccc-----hhHHHHHHHHH-HcCcEEEeccCc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGH--EP--TQGNYYF-----QDR-----YDLVRFIKLVQ-QAGLYVHLRIGP 129 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~ty-v~Wn~h--Ep--~~G~~df-----~G~-----~dl~~fl~la~-~~GL~Vilr~GP 129 (605)
+-+.|++.|+.++++|.|+|..- +----. .| ..++..| +.. .++.++++.++ ++||.++.-.=
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV- 98 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV- 98 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe-
Confidence 44689999999999999999741 111000 00 0111111 111 49999999885 79998764431
Q ss_pred eeccccCCCC-CCeEecccCCcccccCChhHHHHH---HHHHHHHHHHhh
Q 007390 130 YVCAEWNYGG-FPVWLKYVPGIEFRTDNGPFKAAM---HKFTEKIVSMMK 175 (605)
Q Consensus 130 yi~aEw~~GG-~P~WL~~~p~~~~R~~~~~y~~~~---~~~~~~l~~~i~ 175 (605)
|+.-. ==.||.++|+.-.-..+.|+++.. ++-+-++-..|.
T Consensus 99 -----~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 99 -----LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred -----eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 33222 246999999764444455555543 333333444443
No 214
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.76 E-value=24 Score=34.73 Aligned_cols=65 Identities=31% Similarity=0.545 Sum_probs=45.3
Q ss_pred EEEEEEEEecCCCC---CcccHHHHHHHHHHCCCCEE--EEceeCCCCCCcCC--eeeeccchhHHHHHHHHHHcCcEEE
Q 007390 52 KRILISGSIHYPRS---TPEMWPDLIQKAKDGGLDVI--QTYVFWNGHEPTQG--NYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 52 p~~l~sG~iHy~r~---~~~~W~~~l~k~Ka~G~NtV--~tyv~Wn~hEp~~G--~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
....-+|--.|.|+ .|-.-++ -+.++|++.+ .|-| ..| -|||-...+|..|+++|+++||.+-
T Consensus 115 k~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDTai-------KDGkslFdfm~~e~l~eFvd~Ah~hGL~~A 184 (235)
T COG1891 115 KKVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDTAI-------KDGKSLFDFMDEEELEEFVDLAHEHGLEVA 184 (235)
T ss_pred ceEEeccccchhhccCcCccccHH---HHHhcCCCEEEEeccc-------ccchhHHhhhcHHHHHHHHHHHHHcchHHH
Confidence 34455666667773 4444443 4678898865 4422 334 5999888999999999999999876
Q ss_pred ec
Q 007390 125 LR 126 (605)
Q Consensus 125 lr 126 (605)
|.
T Consensus 185 lA 186 (235)
T COG1891 185 LA 186 (235)
T ss_pred hc
Confidence 65
No 215
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.62 E-value=6.8e+02 Score=24.97 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCcCC-eeeec-cchhHHHHHHHHHHcCcEEEecc------CceeccccCCCCCCe
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG-NYYFQ-DRYDLVRFIKLVQQAGLYVHLRI------GPYVCAEWNYGGFPV 142 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G-~~df~-G~~dl~~fl~la~~~GL~Vilr~------GPyi~aEw~~GG~P~ 142 (605)
++.++.|+++|++++.+ | .-.|+ |..-|.+.++..++.|+..+--- .||.-=|.+ |...
T Consensus 67 ~~~~~~L~~~G~d~~tl-----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~--g~kV 133 (239)
T cd07381 67 PEVADALKAAGFDVVSL-----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVN--GIKV 133 (239)
T ss_pred HHHHHHHHHhCCCEEEc-----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEEC--CEEE
Q ss_pred EecccCCccccc----------CChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHH
Q 007390 143 WLKYVPGIEFRT----------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAK 212 (605)
Q Consensus 143 WL~~~p~~~~R~----------~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~ 212 (605)
=+...-...... ....-.+.++++++++-+. . .+. |++.+...||... -..+.+
T Consensus 134 g~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~--D~v------Iv~~H~G~e~~~~-------p~~~~~ 197 (239)
T cd07381 134 AFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-A--DIV------IVSLHWGVEYSYY-------PTPEQR 197 (239)
T ss_pred EEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-C--CEE------EEEecCcccCCCC-------CCHHHH
Q ss_pred HHHHHHHhcCCCc
Q 007390 213 WAAQMAVGLNTGV 225 (605)
Q Consensus 213 ~l~~~~~~~g~~v 225 (605)
.+++.+.+.|+++
T Consensus 198 ~la~~l~~~G~D~ 210 (239)
T cd07381 198 ELARALIDAGADL 210 (239)
T ss_pred HHHHHHHHCCCCE
No 216
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=25.53 E-value=1.3e+02 Score=31.27 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHH-HcCcEEEeccC
Q 007390 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ-QAGLYVHLRIG 128 (605)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~-~~GL~Vilr~G 128 (605)
+.+.+.=.+..+.+-++|++.||+..+-...+...|...|.....+.++.++.+ +.-+-+++|++
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 467888889999999999999999888776556667777774445555555543 44555677775
No 217
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.42 E-value=4.9e+02 Score=29.12 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=57.0
Q ss_pred HHHHHHHHHCCCCEEEEcee----CCCCCCcCCeeeeccchhHHHHHHHHHHcCcEE--EeccCceeccccCCCCCCeEe
Q 007390 71 PDLIQKAKDGGLDVIQTYVF----WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWL 144 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~----Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL 144 (605)
...++.+.+.|+|++++++- |..-+..+ .++.+|.++|+++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 35788999999999999862 55443333 48899999999998852 33356663
Q ss_pred cccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEecc
Q 007390 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (605)
Q Consensus 145 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QI 192 (605)
+.+-+.|+.-++..-+.+..-+++-. .+ |-+.+.++.
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~--~L----Ga~~VV~HP 239 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE--QL----GIKLYNFHP 239 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC
Confidence 23444566666665555555555444 22 345555553
No 218
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=25.36 E-value=1.4e+02 Score=32.12 Aligned_cols=48 Identities=19% Similarity=0.411 Sum_probs=39.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcE
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY 122 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~ 122 (605)
..-.|+.--.-.+.+||-+|.+|-+|+.-+..= |++.|+...+..--.
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~ 178 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEG 178 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCC
Confidence 455799999999999999999999999655432 777898888876666
No 219
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.25 E-value=1.3e+02 Score=32.12 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=44.9
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCC-------------cCCeeeeccchhHHHHHHHHHHcCcEEEeccCc
Q 007390 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-------------TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (605)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp-------------~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GP 129 (605)
|||.|.|.+.++.+++.|+..| +++.-.|. .+...|..|..+|..+..+.+...++|---.||
T Consensus 198 ~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSGp 273 (352)
T PRK10422 198 CWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSAP 273 (352)
T ss_pred CCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 4999999999999988887544 44543321 123467777778888888888888777666665
No 220
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=25.22 E-value=50 Score=35.16 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=40.2
Q ss_pred EEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE-ecc
Q 007390 53 RILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRI 127 (605)
Q Consensus 53 ~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~ 127 (605)
.++++-+..--+. |+.|++.+..+=+.|+|.|+- +|+.-. |...|.++|+++|..++ +|.
T Consensus 35 ~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 35 TLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp EEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred EEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 3445544444444 688999999999999999985 666443 67799999999999877 664
No 221
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=25.21 E-value=1.8e+02 Score=31.82 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=21.1
Q ss_pred EEEEECCEEEEEEEcccCCCeeEEecceecCC---CccEE
Q 007390 513 LQVFINGQLSGTVYGSLENPKLTFSKNVKLRP---GVNKI 549 (605)
Q Consensus 513 ~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~---G~N~L 549 (605)
...||||+++-....-...+.|.+.. .||+ |+..+
T Consensus 88 ~~t~lng~~~~~S~~LelG~dYefkv--~lkaR~pG~~hv 125 (399)
T TIGR03079 88 LSTKVNGMPVFISGPLEIGRDYEFEV--TLQARIPGRHHM 125 (399)
T ss_pred eeEEECCEeecceeEeecCCceeEEE--EEeeccCCcccc
Confidence 34899999965444334556777764 3553 65433
No 222
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.71 E-value=2.6e+02 Score=26.46 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=35.3
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEe
Q 007390 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~--~dl~~fl~la~~~GL~Vil 125 (605)
.++.+.+.+--|++|-.+|- +|.-.|.|. .+|-+.+. ++...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 36678889999999999995 477788886 46666666 6666666664
No 223
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=24.51 E-value=1.2e+02 Score=36.23 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=40.0
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCcC---C-----------------eeeecc-----chhHHHHHHHHHHcCcEEEec
Q 007390 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----------------NYYFQD-----RYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~t-yv~Wn~hEp~~---G-----------------~~df~G-----~~dl~~fl~la~~~GL~Vilr 126 (605)
.|.-+|.+|+++|+. .|+.-..|+.. | .|--.+ .+.+..+|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999996 57655555443 2 222222 247888899999999999987
Q ss_pred c
Q 007390 127 I 127 (605)
Q Consensus 127 ~ 127 (605)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 224
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=24.28 E-value=1.3e+02 Score=35.10 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=44.1
Q ss_pred ecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE
Q 007390 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 60 iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
+=|.|.|.+.-+..++++++.|+++|+++...|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 44667777788889999999999999998777642 378899999999999864
No 225
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.17 E-value=3.4e+02 Score=29.69 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=55.9
Q ss_pred cceEEEccceEEECCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeecc--chhHHHHH
Q 007390 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFI 113 (605)
Q Consensus 36 ~~~v~~d~~~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G--~~dl~~fl 113 (605)
...|.+ ..+.+.|...+++.|..=- -..+.-.+..+.+|+.|+..++-..|= |+.--|.|.| ...+..+-
T Consensus 104 ~~~~~~--~~~~~g~~~~~~iaGpc~i--E~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~ 175 (360)
T PRK12595 104 DTIVDV--KGEVIGDGNQSFIFGPCSV--ESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILK 175 (360)
T ss_pred CCEEEE--CCEEecCCCeeeEEecccc--cCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHH
Confidence 334444 3366665444446564110 135667778888999999999876554 4433356765 46888999
Q ss_pred HHHHHcCcEEEecc
Q 007390 114 KLVQQAGLYVHLRI 127 (605)
Q Consensus 114 ~la~~~GL~Vilr~ 127 (605)
+.|++.||.++-.|
T Consensus 176 ~~~~~~Gl~~~t~v 189 (360)
T PRK12595 176 QVADEYGLAVISEI 189 (360)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999998776
No 226
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=23.85 E-value=1.6e+02 Score=29.32 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=39.3
Q ss_pred EEEEecCCCCCccc--HHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHc-CcEEE-eccC
Q 007390 56 ISGSIHYPRSTPEM--WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVH-LRIG 128 (605)
Q Consensus 56 ~sG~iHy~r~~~~~--W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~-GL~Vi-lr~G 128 (605)
+=++.|.|..+|+. |.+.+++|++.|.+.|..-+.=+ +.+....|.+|++.+++. +..+| +.-|
T Consensus 116 iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~---------~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 116 IILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMAN---------SPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp EEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-S---------SHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccC---------CHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 44679977755554 88999999999999998744322 223333556666666654 56655 5555
No 227
>PLN02389 biotin synthase
Probab=23.70 E-value=1.1e+02 Score=33.78 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcee--CCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVF--WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~--Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
.=++.++++|++|++.+..-+- -+++...-..-+|+ +..+.++.|++.||.|.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 3478899999999998766211 11111111112444 66788999999999863
No 228
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=23.59 E-value=67 Score=39.08 Aligned_cols=55 Identities=18% Similarity=0.403 Sum_probs=40.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEE------------ceeCCCCCC------cCCeeeeccchhHHHHHHHHHH-cCcEE
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQT------------YVFWNGHEP------TQGNYYFQDRYDLVRFIKLVQQ-AGLYV 123 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~t------------yv~Wn~hEp------~~G~~df~G~~dl~~fl~la~~-~GL~V 123 (605)
|-+.|+.+|+++|+.|.|+|.. |-.-++||- .-++|.|+ |+..+++-|++ -++..
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvls 213 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLS 213 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeee
Confidence 5689999999999999999972 333334432 23568888 99999988865 45543
No 229
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.48 E-value=3.2e+02 Score=28.39 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=65.5
Q ss_pred EEEEEEEecCCCCCc----ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEE--Eec
Q 007390 53 RILISGSIHYPRSTP----EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLR 126 (605)
Q Consensus 53 ~~l~sG~iHy~r~~~----~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~V--ilr 126 (605)
.+-+++..|+.+-+. +.=.++|++=.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+ ++-
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 467888887765222 22224566666899998888333 4444 8889999999997664 444
Q ss_pred cCceec-------cccCCCCCCeEecccCCcccc-cCC-hhHHHHHHHHHHHHHHHhh
Q 007390 127 IGPYVC-------AEWNYGGFPVWLKYVPGIEFR-TDN-GPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 127 ~GPyi~-------aEw~~GG~P~WL~~~p~~~~R-~~~-~~y~~~~~~~~~~l~~~i~ 175 (605)
+-|-.. .+|..-.+|.|+.+. + -+ .++ ...+++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~--l-~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR--L-EKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH--H-HhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444222 336666788888762 1 11 123 3455556666666666665
No 230
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.36 E-value=59 Score=35.09 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCCEEE-----EceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEE
Q 007390 70 WPDLIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (605)
Q Consensus 70 W~~~l~k~Ka~G~NtV~-----tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~V 123 (605)
-++.++++|++|++.+- ++..--++.-.|+....+ +..+.++.|+++|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 45679999999997553 322222233334443333 5568899999999975
No 231
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=23.10 E-value=7.6e+02 Score=27.32 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=48.0
Q ss_pred EEEEEEEecCCCCCcccH----HHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc-
Q 007390 53 RILISGSIHYPRSTPEMW----PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI- 127 (605)
Q Consensus 53 ~~l~sG~iHy~r~~~~~W----~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~- 127 (605)
.++++|.+.-...++... .+.+++++..++. +|+...=|.... .+....++.++.|++|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~~ 109 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASAS 109 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEeccc
Confidence 567888885433444333 3455677777764 455555554332 24456677889999988554
Q ss_pred -----CceeccccCCCCCCeEecccCC
Q 007390 128 -----GPYVCAEWNYGGFPVWLKYVPG 149 (605)
Q Consensus 128 -----GPyi~aEw~~GG~P~WL~~~p~ 149 (605)
.|... +-..|...+|+.-.|-
T Consensus 110 ~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 110 DDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred ccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22211 2234556677776553
No 232
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=23.02 E-value=1.2e+02 Score=35.79 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=45.4
Q ss_pred CCEEEEEEEEEecCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 49 dG~p~~l~sG~iHy~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
.|.++.+-+=.+|+...-.-.=+=...++|++|++.|-. +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 449 ~~~~i~vgAQnv~~~~~GA~TGEVSa~mLkd~G~~~vii----GHSERR~-~f~-Etd~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 449 DGSNIKLGAQNVFYEEKGAYTGEISGPMLAEIGVEYVII----GHSERRQ-YFG-ETDELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred cCCCeEEEcccccccccCCccCcCCHHHHHHcCCCEEEE----CcccccC-CcC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 454544333335543321111233567899999999998 6666554 222 2234455556999999999999987
No 233
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=22.79 E-value=2.2e+02 Score=29.58 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=56.6
Q ss_pred cceEEEccceEEECCEEEEEEEEEecCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeec--cchhHHHH
Q 007390 36 KASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRF 112 (605)
Q Consensus 36 ~~~v~~d~~~~~~dG~p~~l~sG~iHy~r~-~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~--G~~dl~~f 112 (605)
...|... .+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|+|=+...| +.|. |..-|..+
T Consensus 11 ~s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l 81 (260)
T TIGR01361 11 KTVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLL 81 (260)
T ss_pred CCEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHH
Confidence 3345553 35565444666777 2121 4555667788899999998888887754433 4465 46778888
Q ss_pred HHHHHHcCcEEEecc
Q 007390 113 IKLVQQAGLYVHLRI 127 (605)
Q Consensus 113 l~la~~~GL~Vilr~ 127 (605)
-+.|++.||.++-.|
T Consensus 82 ~~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 82 RRAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHHhCCCEEEee
Confidence 999999999988776
No 234
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.65 E-value=1.8e+02 Score=30.35 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=38.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCee--eecc-chhHHHHHHHHHHc-CcEEEeccC
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQD-RYDLVRFIKLVQQA-GLYVHLRIG 128 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~--df~G-~~dl~~fl~la~~~-GL~Vilr~G 128 (605)
.++.|.+..++++++|++.|+. |++-|..... .+.+ .+.+.++++.+++. ++-|.++.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iEl----N~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~ 162 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIEL----NISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT 162 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4788999999999999999999 4444442111 1211 24566777777775 555555544
No 235
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.53 E-value=2.4e+02 Score=30.02 Aligned_cols=68 Identities=22% Similarity=0.464 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee-CCC-CCCcCCe-----eeeccc--hhHHHHHHHHHHcCcEEEeccCceecc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVF-WNG-HEPTQGN-----YYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~-Wn~-hEp~~G~-----~df~G~--~dl~~fl~la~~~GL~Vilr~GPyi~a 133 (605)
+.+.-.+.++++++.||-.=.+++- |.. ++..-|. |+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 6777899999999999976666553 632 2332232 344332 389999999999999999998888753
No 236
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=22.47 E-value=5.5e+02 Score=23.98 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=62.8
Q ss_pred Ceeeeccchh-HHHHHHHHHHc-CcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhh
Q 007390 99 GNYYFQDRYD-LVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (605)
Q Consensus 99 G~~df~G~~d-l~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 176 (605)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +....||.+.++- ++=+|.-+..+. +.+.+.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~l~---~~i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHKLL---DTIVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHHHH---HHHHHHHH-
Confidence 4455554433 67788877555 4678888545444444 5567899987631 344565444333 33444454
Q ss_pred ccccccCCCcEEEec------cccccCCccccCCcchHHHHHHHHHHHHhcCCC
Q 007390 177 EKLFQTQGGPIILSQ------IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTG 224 (605)
Q Consensus 177 ~~~~~~~gGpII~~Q------IENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 224 (605)
.+++.||.+. +||.+-+ --.|+..|++.+...+-.
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~~--------v~KFL~~LkD~~~~~~~~ 113 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFES--------VLKFLASLKDYALLNNGT 113 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHHH--------HHHHHHHhHHHeeccCCE
Confidence 2355688877 4555432 466899999998665544
No 237
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.07 E-value=81 Score=32.38 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCc---CCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~---~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
+.+++.++.++++|+++|.+ |..+.+. +..+.- =...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788999999999997755 3333321 111110 014677778888899999999874
No 238
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.06 E-value=1.4e+02 Score=31.03 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 71 ~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
.+.++.+.+.|+..|++.+..+ +++ .+...++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 4578889999999999987554 344 78889999999999887654
No 239
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.99 E-value=1.5e+02 Score=26.58 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=31.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
.+++...+.++.+++.|+..|=.. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 578899999999999998766541 11 255789999999999976
No 240
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=2.2e+02 Score=29.79 Aligned_cols=113 Identities=17% Similarity=0.261 Sum_probs=73.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee-CCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeE
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVF-WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~-Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 143 (605)
+.++.++---+.++..|+ ++.++. ..+.++-+|+|| +|+.=.|||-.| .....|.+
T Consensus 142 is~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~~~~~fD--------------------lIVsNPPYip~~-~~~~~~~~ 198 (280)
T COG2890 142 ISPDALALARENAERNGL--VRVLVVQSDLFEPLRGKFD--------------------LIVSNPPYIPAE-DPELLPEV 198 (280)
T ss_pred CCHHHHHHHHHHHHHcCC--ccEEEEeeecccccCCcee--------------------EEEeCCCCCCCc-ccccChhh
Confidence 457777777788999997 333322 377788887665 566667999998 77778888
Q ss_pred ecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCcchHHHHHHHHHHHHhcCC
Q 007390 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNT 223 (605)
Q Consensus 144 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 223 (605)
+...|...+-... .=++..++++..+-..++ + |-++++.+ |. . ..+.++++..+.|.
T Consensus 199 ~~~EP~~Al~~g~-dGl~~~~~i~~~a~~~l~--~------~g~l~le~----g~-----~-----q~~~v~~~~~~~~~ 255 (280)
T COG2890 199 VRYEPLLALVGGG-DGLEVYRRILGEAPDILK--P------GGVLILEI----GL-----T-----QGEAVKALFEDTGF 255 (280)
T ss_pred hccCHHHHHccCc-cHHHHHHHHHHhhHHHcC--C------CcEEEEEE----CC-----C-----cHHHHHHHHHhcCC
Confidence 8777754444333 556677777777666666 3 34555543 31 1 24556777777663
No 241
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=21.93 E-value=1.4e+02 Score=31.35 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=51.0
Q ss_pred CEEEE-EEEEEecCC-CCCcccHHHHHHHHHHCCCCEEEEceeCCC-CCCc--------CCeeeeccchhHHHHHHHHHH
Q 007390 50 GQKRI-LISGSIHYP-RSTPEMWPDLIQKAKDGGLDVIQTYVFWNG-HEPT--------QGNYYFQDRYDLVRFIKLVQQ 118 (605)
Q Consensus 50 G~p~~-l~sG~iHy~-r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~-hEp~--------~G~~df~G~~dl~~fl~la~~ 118 (605)
.++++ +.-|.-+.. |||.+.|.+.++.+++.|+..| +.+.- .|.. ...-+..|..+|..++.+.+.
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHh
Confidence 34544 344544544 4999999999999988887544 32321 1110 112466788888888888888
Q ss_pred cCcEEEeccCc
Q 007390 119 AGLYVHLRIGP 129 (605)
Q Consensus 119 ~GL~Vilr~GP 129 (605)
..+.|---.||
T Consensus 254 a~l~I~nDSGp 264 (322)
T PRK10964 254 AKAVVSVDTGL 264 (322)
T ss_pred CCEEEecCCcH
Confidence 88888777776
No 242
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.91 E-value=3.4e+02 Score=28.88 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=44.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--CCCC---CC------------------------cCCeeeeccchhHHHHHHHH
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EP------------------------TQGNYYFQDRYDLVRFIKLV 116 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~--Wn~h---Ep------------------------~~G~~df~G~~dl~~fl~la 116 (605)
+.+..++.|..|-..++|++..++- |.+- .| ..|.|. ..++..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6889999999999999999997543 3221 11 122333 35999999999
Q ss_pred HHcCcEEEecc
Q 007390 117 QQAGLYVHLRI 127 (605)
Q Consensus 117 ~~~GL~Vilr~ 127 (605)
++.|+.||-.+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999999665
No 243
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=21.90 E-value=2.5e+02 Score=29.01 Aligned_cols=89 Identities=21% Similarity=0.342 Sum_probs=55.5
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcC--cEEEeccCceec-------cccCCCCCCe
Q 007390 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAG--LYVHLRIGPYVC-------AEWNYGGFPV 142 (605)
Q Consensus 72 ~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~ 142 (605)
++|++=-++|.+.+-|-.+. |.+ .+.+|++.|++.| +.|+..+-|-.. +++-.-++|.
T Consensus 151 ~~L~~Ki~aGA~f~iTQ~~f----------d~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~ 217 (274)
T cd00537 151 KRLKRKVDAGADFIITQLFF----------DND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPD 217 (274)
T ss_pred HHHHHHHHCCCCEEeecccc----------cHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCH
Confidence 34444445699999984443 333 8889999999998 456666666322 3455667899
Q ss_pred EecccCCcc-cccCChhHHHHHHHHHHHHHHHhh
Q 007390 143 WLKYVPGIE-FRTDNGPFKAAMHKFTEKIVSMMK 175 (605)
Q Consensus 143 WL~~~p~~~-~R~~~~~y~~~~~~~~~~l~~~i~ 175 (605)
|+.+. +. ...+....++.-.++..++++.+.
T Consensus 218 ~~~~~--l~~~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 218 WLLER--LEKLKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 98862 11 112223445556667777777766
No 244
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=21.71 E-value=3.8e+02 Score=24.30 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=27.4
Q ss_pred eccCCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEe
Q 007390 507 WSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLST 554 (605)
Q Consensus 507 ~~i~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILve 554 (605)
++.+|.++|++||+.|-+.........-+|+. -+.|+...+|.+.
T Consensus 45 G~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~v---~kgG~y~m~V~lC 89 (106)
T cd02848 45 GDPGDTYKVLLDGKEVWSGALTGSSGTATFKV---GKGGRYQMQVALC 89 (106)
T ss_pred CCCCcEEEEEECCeEEEcccCCCCccEEEEEe---CCCCeEEEEEEEE
Confidence 78899999999999986554221111222321 2456667777443
No 245
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.58 E-value=5.3e+02 Score=25.90 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=69.3
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--ceeCCCCCC---cCC--eeeec-----------c--chhHHHHHHHHHHcCcEEEe
Q 007390 67 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---TQG--NYYFQ-----------D--RYDLVRFIKLVQQAGLYVHL 125 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~Nt-V~t--yv~Wn~hEp---~~G--~~df~-----------G--~~dl~~fl~la~~~GL~Vil 125 (605)
++.-.+.++++|+.|+.+ |+| |++|...+. .=+ -+|+- | +..+.+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455678899999999874 555 334422111 111 22332 2 23555667778888888888
Q ss_pred ccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCcEEEecccc-----------
Q 007390 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN----------- 194 (605)
Q Consensus 126 r~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QIEN----------- 194 (605)
|. |. +|++ ++++.-++++.+|++.+. +. +|-+..--+
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 85 22 3554 245666666666655431 11 121111111
Q ss_pred ccCCccccCCcchHHHHHHHHHHHHhcCCCc
Q 007390 195 EFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (605)
Q Consensus 195 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (605)
+|-.. .......+.++.+++.+++.|+.+
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22110 112356889999999999998875
No 246
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.57 E-value=1.5e+02 Score=30.69 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=38.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCe-eee-ccchhHHHHHHHHHHc-CcEEEeccCc
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYF-QDRYDLVRFIKLVQQA-GLYVHLRIGP 129 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~-~df-~G~~dl~~fl~la~~~-GL~Vilr~GP 129 (605)
.++.|.+..+.+.+.|++.|+. |..-|.... =++ .....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 5788999999999999999998 555554321 000 0112566677777664 5666666554
No 247
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=21.56 E-value=1.4e+02 Score=33.31 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=41.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcE-EEeccC
Q 007390 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY-VHLRIG 128 (605)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~-Vilr~G 128 (605)
...+.-+..|..+|+.|+|.|=+++.=.---+.+..|.= -..|-+..++++.+.|.. .+|-+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 456677889999999999999996543311112212211 124556667788899998 468875
No 248
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.53 E-value=1.3e+02 Score=31.01 Aligned_cols=58 Identities=22% Similarity=0.155 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCC-CCCCcCCeeeeccchhHHHHHHHHHHcCcEEEecc
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWN-GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn-~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~ 127 (605)
..++.++.++++|+++|.+.-... ..+..+-.++. -...|.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR-FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH-HHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997521100 00000000100 01366788899999999999985
No 249
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.17 E-value=3.8e+02 Score=20.42 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCe----eeec--cchhHHHHHHHHHHcCcEEE
Q 007390 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN----YYFQ--DRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 67 ~~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~----~df~--G~~dl~~fl~la~~~GL~Vi 124 (605)
|....+.++.+.+.|+|..++...=....-.+|. +.++ +..+++.+++..++.|..|.
T Consensus 9 ~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 9 PGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 5678899999999999999875331111001233 3333 34678899999999997663
No 250
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.12 E-value=1.4e+02 Score=31.58 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=48.5
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceeCCCC--C-----------CcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH--E-----------PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 62 y~r~~~~~W~~~l~k~Ka~G~NtV~tyv~Wn~h--E-----------p~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
+-|||.+.|.+.++.+.+-|+..|=+ +.-. | +.+...|+.|..+|..++.+.+...+.|---.|
T Consensus 194 ~K~Wp~e~~~~l~~~l~~~~~~ivl~---g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSG 270 (344)
T TIGR02201 194 FKCWDNDRFSALIDALHARGYEVVLT---SGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSV 270 (344)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEe---cCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCH
Confidence 33599999999999998878765543 3321 1 123467888988999999999988888877777
Q ss_pred c
Q 007390 129 P 129 (605)
Q Consensus 129 P 129 (605)
|
T Consensus 271 p 271 (344)
T TIGR02201 271 P 271 (344)
T ss_pred H
Confidence 6
No 251
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=21.05 E-value=1.2e+02 Score=31.20 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eccCceec
Q 007390 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVC 132 (605)
Q Consensus 68 ~~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vi-lr~GPyi~ 132 (605)
+.-.+.++++|+.|+ ++-+| .+|.+ ..++.|++.|-..| |-+|||..
T Consensus 110 ~~l~~~i~~l~~~gI---~VSLF---iDP~~------------~qi~~A~~~GAd~VELhTG~YA~ 157 (237)
T TIGR00559 110 DKLCELVKRFHAAGI---EVSLF---IDADK------------DQISAAAEVGADRIEIHTGPYAN 157 (237)
T ss_pred HHHHHHHHHHHHCCC---EEEEE---eCCCH------------HHHHHHHHhCcCEEEEechhhhc
Confidence 344566777888887 33333 45554 56788888888755 88888875
No 252
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.04 E-value=1.1e+02 Score=31.44 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcee-CCCCC---CcCCeeee-ccchhHHHHHHHHHHcCcEEEeccC
Q 007390 64 RSTPEMWPDLIQKAKDGGLDVIQTYVF-WNGHE---PTQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~NtV~tyv~-Wn~hE---p~~G~~df-~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
..+++.|++..+.+|+.|+..+.|.+- .+... ...-.|-- |+...=..+|+.+++.|+-|||-+|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 378999999999999999999998432 11111 11111211 3444444689999999999999886
No 253
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.84 E-value=1.8e+02 Score=31.26 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------cCC-----------eeeeccchhHHHHHHHHHHcCcEEE
Q 007390 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQG-----------NYYFQDRYDLVRFIKLVQQAGLYVH 124 (605)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~NtV~tyv~----Wn~hEp------~~G-----------~~df~G~~dl~~fl~la~~~GL~Vi 124 (605)
+.+..++.|..|...++|+...++- |.+.-+ ..| .|. ..|+..+++.|++.|+.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 7889999999999999999998873 543321 122 333 3599999999999999999
Q ss_pred ecc
Q 007390 125 LRI 127 (605)
Q Consensus 125 lr~ 127 (605)
-.+
T Consensus 93 PEi 95 (329)
T cd06568 93 PEI 95 (329)
T ss_pred Eec
Confidence 765
No 254
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=20.82 E-value=4.4e+02 Score=27.86 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHcCcEEEeccCceeccccCCCCCCeEecccCCcccccCChhHHHHHHHHHHHHHHHhhhccccccCCCc
Q 007390 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGP 186 (605)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~~~~~~gGp 186 (605)
..+.+.|+.|++.|++|+|-+|- |. |.. + ..++ +..+++.+.|.+.++++.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-----~~-~~~---------~---~~~~---~~~~~fa~sl~~~~~~~g~------- 111 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-----AN-GHV---------D---LNHT---AQEDNFVDSIVAIIKEYGF------- 111 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-----CC-Ccc---------c---cCCH---HHHHHHHHHHHHHHHHhCC-------
Confidence 36788899999999999999862 21 110 0 1222 3456777888888885543
Q ss_pred EEEeccccccCCccccCCcchHHHHHHHHHHHHhcC
Q 007390 187 IILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (605)
Q Consensus 187 II~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 222 (605)
=++.|+=|++............|.+.|+++-...+
T Consensus 112 -DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 112 -DGLDIDLESGSNPLNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred -CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC
Confidence 26677778764311000122456666666655544
No 255
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=20.64 E-value=1.6e+02 Score=32.00 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEeccC
Q 007390 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (605)
Q Consensus 69 ~W~~~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr~G 128 (605)
..++.+..+| |+..+|. +-.||.| .++ -|.+-+++|+++++..+|..|
T Consensus 46 vydqV~~~Lk--g~~~~E~----~GVEPNP---~~~---Tv~kaV~i~kee~idflLAVG 93 (384)
T COG1979 46 VYDQVVEALK--GIEVIEF----GGVEPNP---RLE---TLMKAVEICKEENIDFLLAVG 93 (384)
T ss_pred hHHHHHHHhc--CceEEEe----cCCCCCc---hHH---HHHHHHHHHHHcCceEEEEec
Confidence 4556677777 9999998 8899999 445 888999999999999999986
No 256
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.32 E-value=2.2e+02 Score=27.74 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCcCCeeeeccchhHHHHHHHHHHcCcEEEec
Q 007390 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (605)
Q Consensus 73 ~l~k~Ka~G~NtV~tyv~Wn~hEp~~G~~df~G~~dl~~fl~la~~~GL~Vilr 126 (605)
.++++.++|.+.|.+..... ...+.++++.|+++|+.+++-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999998754431 236789999999999998875
No 257
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=20.30 E-value=1.2e+02 Score=32.56 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=28.1
Q ss_pred ccceEEECCEEEEEEEEEecCCCCCcccHHHHH-HHHHHCCCCEEEE
Q 007390 42 DHKAVIINGQKRILISGSIHYPRSTPEMWPDLI-QKAKDGGLDVIQT 87 (605)
Q Consensus 42 d~~~~~~dG~p~~l~sG~iHy~r~~~~~W~~~l-~k~Ka~G~NtV~t 87 (605)
|.+.+.|||||+++|=..-.. .....+-+.+ +.+|++|+.-+-.
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~--pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDI--PDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECcccc--cCHHHHHHHHHHHHHHcCCCceEE
Confidence 678999999999988544221 1222333334 5668899885544
No 258
>PF09829 DUF2057: Uncharacterized protein conserved in bacteria (DUF2057); InterPro: IPR018635 The proteins in this entry are functionally uncharacterised.
Probab=20.13 E-value=1.9e+02 Score=28.31 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=29.1
Q ss_pred CCeEEEEECCEEEEEEEcccCCCeeEEecceecCCCccEEEEEEeecC
Q 007390 510 GHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (605)
Q Consensus 510 ~D~~~VfVNG~~VGt~~~~~~~r~~~l~~~i~Lk~G~N~L~ILven~G 557 (605)
.+.....|||+.++...-.. .. .+.|..|.|.|.++...+-
T Consensus 7 ~~i~~l~vnG~~v~~~~~~~-~~------~l~L~~G~~Qiv~ry~~~~ 47 (189)
T PF09829_consen 7 DEIELLAVNGQEVSGSLFSS-KD------SLELPPGENQIVFRYSKIF 47 (189)
T ss_pred CCEEEEEEcCeeccCccccC-Cc------eEEeCCCcEEEEEEEeEee
Confidence 56677899999986433221 11 2457889999999999886
Done!