BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007391
         (605 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
          Length = 727

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 316 ALDQHFKW-----LLQYRISPFFCRWGESMRVLTYTCPWP 350
            L++HF W     L+ YRISP    W E  +  TY    P
Sbjct: 503 GLEEHFPWKDRLELINYRISPTGMEWEEYQKQYTYMSKLP 542


>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
           Entamoeba Histolytica
 pdb|1M6J|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
           Entamoeba Histolytica
          Length = 261

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 129 MLRRVVPMLGVPDALVPLDLPVCQISLIPGETTAVWVSIDAPYA-QPPGLYEGEIIITSK 187
           + ++V  ++GVP   +P    V QI  + GE     + + A  A    G Y GE+ +   
Sbjct: 36  LAKKVEVIVGVPFIYIP---KVQQI--LAGEANGANILVSAENAWTKSGAYTGEVHVGML 90

Query: 188 ADTELSSQCLGKGEKHRLFME 208
            D ++    LG  E+ ++F E
Sbjct: 91  VDCQVPYVILGHSERRQIFHE 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,554,812
Number of Sequences: 62578
Number of extensions: 868885
Number of successful extensions: 1646
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1645
Number of HSP's gapped (non-prelim): 3
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)