Query 007392
Match_columns 605
No_of_seqs 308 out of 1801
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 22:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 8E-111 2E-115 931.6 46.2 430 149-603 106-549 (636)
2 KOG2287 Galactosyltransferases 100.0 5.2E-43 1.1E-47 370.1 19.3 242 350-596 4-252 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 1.1E-36 2.5E-41 323.9 17.1 194 390-603 103-312 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 4.6E-32 9.9E-37 262.9 11.7 146 458-603 1-156 (195)
5 smart00276 GLECT Galectin. Gal 100.0 7.9E-30 1.7E-34 233.7 16.7 127 202-412 1-127 (128)
6 PF00337 Gal-bind_lectin: Gala 100.0 1.7E-29 3.7E-34 231.4 16.5 133 201-412 1-133 (133)
7 cd00070 GLECT Galectin/galacto 100.0 4.6E-29 1E-33 228.0 15.8 127 201-411 1-127 (127)
8 PTZ00210 UDP-GlcNAc-dependent 99.9 8.4E-28 1.8E-32 253.4 12.1 158 430-603 71-257 (382)
9 KOG3587 Galectin, galactose-bi 99.9 1E-24 2.2E-29 204.6 15.3 137 200-414 4-140 (143)
10 KOG2288 Galactosyltransferases 99.9 6.6E-24 1.4E-28 213.3 14.8 156 441-598 8-171 (274)
11 PF02434 Fringe: Fringe-like; 98.8 7E-09 1.5E-13 106.0 5.5 117 445-573 7-125 (252)
12 KOG2246 Galactosyltransferases 98.4 5E-07 1.1E-11 97.3 6.9 114 442-572 89-206 (364)
13 PLN03153 hypothetical protein; 95.9 0.02 4.3E-07 64.5 7.4 42 532-573 208-249 (537)
14 KOG3708 Uncharacterized conser 83.9 1.6 3.5E-05 49.5 5.3 102 445-568 27-131 (681)
15 PF00535 Glycos_transf_2: Glyc 66.2 30 0.00066 30.5 7.7 88 477-570 27-115 (169)
16 cd04195 GT2_AmsE_like GT2_AmsE 61.5 63 0.0014 30.4 9.4 87 478-570 30-118 (201)
17 cd04187 DPM1_like_bac Bacteria 60.8 57 0.0012 30.4 8.9 90 477-572 29-118 (181)
18 PF00853 Runt: Runt domain; I 59.4 12 0.00025 35.5 3.7 30 339-379 87-125 (135)
19 PF13641 Glyco_tranf_2_3: Glyc 57.9 35 0.00075 32.9 7.0 119 446-571 3-124 (228)
20 PRK11204 N-glycosyltransferase 55.4 1.3E+02 0.0028 32.5 11.7 72 483-559 88-159 (420)
21 cd06423 CESA_like CESA_like is 53.7 71 0.0015 28.0 7.8 36 524-559 68-103 (180)
22 cd04179 DPM_DPG-synthase_like 52.9 68 0.0015 29.5 7.9 76 491-571 41-117 (185)
23 cd04192 GT_2_like_e Subfamily 52.5 2.1E+02 0.0046 27.1 11.9 65 503-570 54-119 (229)
24 cd04196 GT_2_like_d Subfamily 46.5 1.4E+02 0.0031 28.0 9.1 87 477-569 27-116 (214)
25 KOG3982 Runt and related trans 41.4 27 0.00058 38.6 3.6 31 339-380 184-223 (475)
26 PF04666 Glyco_transf_54: N-Ac 40.4 4.1E+02 0.0088 28.6 12.2 125 442-568 50-206 (297)
27 PRK14583 hmsR N-glycosyltransf 39.7 3.5E+02 0.0076 29.9 12.1 77 477-559 104-180 (444)
28 COG4092 Predicted glycosyltran 39.6 91 0.002 33.5 7.0 64 493-556 51-116 (346)
29 cd06435 CESA_NdvC_like NdvC_li 38.1 2.5E+02 0.0055 27.2 9.6 37 524-560 72-110 (236)
30 KOG1594 Uncharacterized enzyme 37.9 1.1E+02 0.0023 32.8 7.1 106 265-407 75-187 (305)
31 cd04185 GT_2_like_b Subfamily 34.8 2.4E+02 0.0052 26.5 8.7 45 525-570 71-116 (202)
32 cd06439 CESA_like_1 CESA_like_ 33.8 4.6E+02 0.01 25.6 14.2 117 445-571 30-147 (251)
33 cd04186 GT_2_like_c Subfamily 33.5 3.4E+02 0.0074 24.0 10.8 28 531-558 71-98 (166)
34 PF13506 Glyco_transf_21: Glyc 33.3 1.7E+02 0.0037 28.4 7.5 46 521-566 18-64 (175)
35 cd06427 CESA_like_2 CESA_like_ 31.3 5.2E+02 0.011 25.4 11.4 37 524-560 74-110 (241)
36 cd04188 DPG_synthase DPG_synth 30.7 2.7E+02 0.0058 26.6 8.4 88 477-570 30-119 (211)
37 PF10111 Glyco_tranf_2_2: Glyc 30.4 6.2E+02 0.013 26.1 13.2 77 476-557 33-111 (281)
38 cd06420 GT2_Chondriotin_Pol_N 30.4 3.2E+02 0.0068 25.1 8.5 36 525-560 70-105 (182)
39 cd04184 GT2_RfbC_Mx_like Myxoc 29.2 4.7E+02 0.01 24.3 13.1 88 477-569 31-120 (202)
40 cd06434 GT2_HAS Hyaluronan syn 29.1 5.2E+02 0.011 24.8 12.8 57 498-560 47-103 (235)
41 cd06421 CESA_CelA_like CESA_Ce 28.4 3.3E+02 0.0072 26.0 8.6 34 527-560 77-110 (234)
42 cd02520 Glucosylceramide_synth 28.4 3E+02 0.0065 26.1 8.3 90 477-569 30-122 (196)
43 cd06442 DPM1_like DPM1_like re 28.4 3.2E+02 0.0069 26.0 8.5 43 528-570 72-115 (224)
44 cd02510 pp-GalNAc-T pp-GalNAc- 27.4 6.2E+02 0.013 25.9 10.9 36 524-559 73-108 (299)
45 TIGR03111 glyc2_xrt_Gpos1 puta 27.0 8.9E+02 0.019 26.8 12.7 49 524-572 121-171 (439)
46 cd02525 Succinoglycan_BP_ExoA 25.4 6.1E+02 0.013 24.3 12.0 87 477-570 31-118 (249)
47 TIGR03472 HpnI hopanoid biosyn 23.7 9.3E+02 0.02 25.9 14.5 80 477-559 70-151 (373)
48 cd06433 GT_2_WfgS_like WfgS an 23.5 1.2E+02 0.0027 27.8 4.5 47 524-570 65-113 (202)
49 PF05212 DUF707: Protein of un 22.5 46 0.001 35.7 1.5 95 464-559 27-144 (294)
50 PF06439 DUF1080: Domain of Un 21.9 2.3E+02 0.005 26.7 6.1 40 351-390 119-158 (185)
51 TIGR03469 HonB hopene-associat 21.7 1E+03 0.023 25.7 13.9 82 477-559 70-158 (384)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=7.8e-111 Score=931.62 Aligned_cols=430 Identities=35% Similarity=0.561 Sum_probs=398.1
Q ss_pred HHHHHHHHHHHHHhHHhhhcccc-c-cccc--CCCCCCCCCCCCccc-cccccccCCCeeEEeccCCCCCCEEEEEEEcC
Q 007392 149 RMADEAWTLGLKAWDEVDKFDVK-E-TVSS--NVYEGKPESCPSWLS-MSGEELANGDRLMFLPCGLAAGSSITVVGTPH 223 (605)
Q Consensus 149 ~~a~~a~~~~~~~w~~~~~~~~~-~-~~~~--~~~~~~~~~Cp~sv~-~~~~~~~~~~~~~~lPcGL~~Gs~ItVvG~p~ 223 (605)
..|.+|++||+.||++|.+++++ . ...+ ...+.++++||+||+ |+++++.++++.+.|||||++|++|||+|+|+
T Consensus 106 ~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G~p~ 185 (636)
T PLN03133 106 PNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIGIPD 185 (636)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhcccccccCCceEEecCCcCCCCCEEEEEEEeC
Confidence 46889999999999999998762 2 2222 223567789999999 99999998899999999999999999999999
Q ss_pred CCcccccchhhcccCCCCccccceEEEEeccCcCCCCCCCCeeEEEeeeeCCCCC-CCCEEEEeccc-CCceeceEeecC
Q 007392 224 YAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWS-HRPVIEHNTCY-RMQWGTAQRCDG 301 (605)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~~v~~~~F~VeL~g~~~~~~~~p~iiLHfNpRl~gd~s-~~pvIv~NT~~-~~~WG~eeRc~g 301 (605)
.. +++|+|||+|+..++++++||||||||||+|||+ ++|+||||||+ +|+||+||||++
T Consensus 186 ~~-------------------~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~EERc~~ 246 (636)
T PLN03133 186 GL-------------------LGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGEEERCPS 246 (636)
T ss_pred CC-------------------CCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccHhhhcCC
Confidence 64 5899999999876666788999999999999975 79999999999 999999999999
Q ss_pred CCCCCCCCccccchhhhhhhccccccccccccccccccccc-cccCCCCCCCCCCCCCCCeEEEEEEEecceEEEEECCe
Q 007392 302 LSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFI-GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGR 380 (605)
Q Consensus 302 ~~s~~~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~fPF~~G~~F~ltI~ag~egfhv~VnGr 380 (605)
|+|++|+ +||||+|||||+|+|+.++++++++||+||+| ++++++..+|+|||++|++|++||+||.|||||+|||+
T Consensus 247 ~~~~~~~--~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~VnG~ 324 (636)
T PLN03133 247 PDPDKNK--KVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMTVDGK 324 (636)
T ss_pred CCccccc--cccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEEECCe
Confidence 9999995 89999999999999999999999999999998 77999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccCCceeeEEecceeeeeeeccCCCCCCCCcchhhhccccccccCCCCC-CCCceEEEEEEcCCCCHHH
Q 007392 381 HVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLP-ARPVHLFIGVLSATNHFAE 459 (605)
Q Consensus 381 h~tsF~yR~~~~le~vt~l~V~GDv~l~sV~a~sLP~s~~sf~p~~~~e~~~~~kapp~c-~~~v~LlIgV~Sap~nf~r 459 (605)
|+|||+||++++||.|++|+|+|||+|+||.+.+||++|++ .++.+++.|++||+. +++++|+|+|+|+++||++
T Consensus 325 H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~----~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~r 400 (636)
T PLN03133 325 HITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDS----EHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFKR 400 (636)
T ss_pred EEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCch----hcccchHHhcCCCCCCCCceEEEEEEeCCcccHHH
Confidence 99999999999999999999999999999999999999987 477788999999977 4679999999999999999
Q ss_pred HHHHHHHhcccCccCCCCeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEE
Q 007392 460 RMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIM 539 (605)
Q Consensus 460 R~aIRkTW~q~~~i~~~~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVm 539 (605)
|+|||+|||+....++..+.++|+||.+.+..++..|++|+++||||||+||+|+|+|+|+||++++.|+.+||+++|||
T Consensus 401 R~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFil 480 (636)
T PLN03133 401 RMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVM 480 (636)
T ss_pred HHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEE
Confidence 99999999998776677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceeecHHHHHHHHHhcCCCCceEEEEecCCCCcccC--CCcccCccccCCCCCCC---Cceeeec
Q 007392 540 KCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEVCKLCMLLC---EFEFTRN 603 (605)
Q Consensus 540 K~DDDtFVnvd~Ll~~L~~~~~~~~LY~G~v~~~~~P~R~--sKWyVs~eeYP~~~YP~---~f~~~~~ 603 (605)
|+|||+|||+++|+++|+.....+.+|+|++..+++|+|+ +|||||+++||.+.||. |.+|+.|
T Consensus 481 K~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS 549 (636)
T PLN03133 481 KTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVS 549 (636)
T ss_pred EcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEc
Confidence 9999999999999999988776778999999999999997 99999999999999993 7777765
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=370.06 Aligned_cols=242 Identities=31% Similarity=0.453 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCeEEEEEEEecceEEEEECCeEEEEecCCCCCccCCceeeEEecceeeeeeeccCCCCCCCCcchhhhcc
Q 007392 350 VTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLE 429 (605)
Q Consensus 350 ~~~~fPF~~G~~F~ltI~ag~egfhv~VnGrh~tsF~yR~~~~le~vt~l~V~GDv~l~sV~a~sLP~s~~sf~p~~~~e 429 (605)
..+.+|+..+..|+.++.++.+++++.++++|.++|.++..++.+..++...++.+..+.....+.+.+...+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (349)
T KOG2287|consen 4 KEFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQKFF--- 80 (349)
T ss_pred ccccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhccCh---
Confidence 45679999999999999999999999999999999999999888999999999999777777777777766553222
Q ss_pred ccccccCCCCCCC--CceEEEEEEcCCCCHHHHHHHHHHhcccCccCCCCeEEEEEEeeCCCh-hHHHHHHHHHhccCCE
Q 007392 430 MSSKWKAEPLPAR--PVHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRK-EVNAVLKKEAAFFGDI 506 (605)
Q Consensus 430 ~~~~~kapp~c~~--~v~LlIgV~Sap~nf~rR~aIRkTW~q~~~i~~~~V~vrFfVG~~~~~-~~n~~L~eEae~ygDI 506 (605)
..+..|+.|.. +++|+|+|+|+++||+||++||+|||+...+.+.+++++|+||++++. +++..|.+|++.||||
T Consensus 81 --~~l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDI 158 (349)
T KOG2287|consen 81 --YLLYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDI 158 (349)
T ss_pred --hhhcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCE
Confidence 22344555543 379999999999999999999999999998889999999999999876 5689999999999999
Q ss_pred EEecccccCcchhHHHHHHHhhccc-CCCceEEEeeCCceeecHHHHHHHHHhc-CCCCceEEEEecCCCCcccC--CCc
Q 007392 507 VILPFMDRYELVVLKTIAICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGI-FPKRSLYMGNLNLLHRPLRT--GKW 582 (605)
Q Consensus 507 L~ldf~DsY~NlTlKTla~l~w~~~-~~~akyVmK~DDDtFVnvd~Ll~~L~~~-~~~~~LY~G~v~~~~~P~R~--sKW 582 (605)
|++||.|+|.|+|+||+++|+|+.. |++|+||||+|||+||++++|+.+|++. ++.+.+|+|++..+.+|+|+ +||
T Consensus 159 i~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~Kw 238 (349)
T KOG2287|consen 159 IQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKW 238 (349)
T ss_pred EEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCC
Confidence 9999999999999999999999997 7789999999999999999999999998 78899999999999999997 999
Q ss_pred ccCccccCCCCCCC
Q 007392 583 AVTYEVCKLCMLLC 596 (605)
Q Consensus 583 yVs~eeYP~~~YP~ 596 (605)
|||+++||+..||.
T Consensus 239 yVp~~~y~~~~YP~ 252 (349)
T KOG2287|consen 239 YVPESEYPCSVYPP 252 (349)
T ss_pred ccCHHHCCCCCCCC
Confidence 99999999999994
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-36 Score=323.87 Aligned_cols=194 Identities=18% Similarity=0.223 Sum_probs=164.3
Q ss_pred CCccCCceeeEEecceeeeeeeccCCCCCCCCcchhhhccccccccCCCCCCCCceEEEEEEcCCCCHHHHHHHHHHhcc
Q 007392 390 GFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPVHLFIGVLSATNHFAERMAIRKTWMQ 469 (605)
Q Consensus 390 ~~~le~vt~l~V~GDv~l~sV~a~sLP~s~~sf~p~~~~e~~~~~kapp~c~~~v~LlIgV~Sap~nf~rR~aIRkTW~q 469 (605)
++++|.+++.+ +.++.+.++|+++++-. + +...+++++|+|+|+|+++|++||++||+|||+
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~ 164 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKK----------T--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMP 164 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCccccccc----------c--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcC
Confidence 44667777766 67777888898877521 1 223356699999999999999999999999998
Q ss_pred cCcc-----CCCCeEEEEEEeeCC--ChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeC
Q 007392 470 SSKI-----KSSNVVARFFVALNP--RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCD 542 (605)
Q Consensus 470 ~~~i-----~~~~V~vrFfVG~~~--~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~D 542 (605)
.... ....++++|+||.+. +..++..|++|+++|||||++||+|+|.|+|+||+++|+|+.++|+++||||+|
T Consensus 165 ~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~D 244 (408)
T PLN03193 165 QGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVD 244 (408)
T ss_pred CcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcC
Confidence 7542 135799999999987 568999999999999999999999999999999999999999999999999999
Q ss_pred CceeecHHHHHHHHHhcCCCCceEEEEecCCCCcccC--CCcccCcccc----CCCCCC---CCceeeec
Q 007392 543 DDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEVC----KLCMLL---CEFEFTRN 603 (605)
Q Consensus 543 DDtFVnvd~Ll~~L~~~~~~~~LY~G~v~~~~~P~R~--sKWyVs~eeY----P~~~YP---~~f~~~~~ 603 (605)
||+|||+++|+.+|+......++|+|++..+ |+|+ ++||+++++| |.+.|| +|++|+.|
T Consensus 245 DDvfVnv~~L~~~L~~~~~~~rlYiG~m~~g--Pvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS 312 (408)
T PLN03193 245 DDVHVNIATLGETLVRHRKKPRVYIGCMKSG--PVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAIS 312 (408)
T ss_pred CCceEcHHHHHHHHHhcCCCCCEEEEecccC--ccccCCCCcCcCcccccccCccccCCCCCCcceEEeh
Confidence 9999999999999987765667999999763 7775 8888888999 558898 38888865
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.97 E-value=4.6e-32 Score=262.89 Aligned_cols=146 Identities=27% Similarity=0.428 Sum_probs=132.0
Q ss_pred HHHHHHHHHhcccCccCCCCeEEEEEEeeCC--ChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCC-C
Q 007392 458 AERMAIRKTWMQSSKIKSSNVVARFFVALNP--RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNV-T 534 (605)
Q Consensus 458 ~rR~aIRkTW~q~~~i~~~~V~vrFfVG~~~--~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~-~ 534 (605)
+||++||+||++.....+.++.++|+||.++ +..++..|.+|+++|+||||+||.|+|.|+|+||+++++|+.++| +
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 4899999999999877778999999999998 778888999999999999999999999999999999999999866 5
Q ss_pred ceEEEeeCCceeecHHHHHHHHHhc--CCCCceEEEEecCCCCcccC--CCcccCccccCCCCCCC---Cceeeec
Q 007392 535 AAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLNLLHRPLRT--GKWAVTYEVCKLCMLLC---EFEFTRN 603 (605)
Q Consensus 535 akyVmK~DDDtFVnvd~Ll~~L~~~--~~~~~LY~G~v~~~~~P~R~--sKWyVs~eeYP~~~YP~---~f~~~~~ 603 (605)
++||+|+|||+|||+++|.++|+.. ......++|.+..+.+|+|+ +|||+++++||.+.||. |-+|+.|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls 156 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLS 156 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEec
Confidence 9999999999999999999999987 45677888998888899996 99999999999999993 4555543
No 5
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.97 E-value=7.9e-30 Score=233.75 Aligned_cols=127 Identities=34% Similarity=0.497 Sum_probs=117.0
Q ss_pred eeEEeccCCCCCCEEEEEEEcCCCcccccchhhcccCCCCccccceEEEEeccCcCCCCCCCCeeEEEeeeeCCCCCCCC
Q 007392 202 RLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSHRP 281 (605)
Q Consensus 202 ~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~g~~~v~~~~F~VeL~g~~~~~~~~p~iiLHfNpRl~gd~s~~p 281 (605)
+...||+||.+|+.|+|.|+|...+ ++|.|||+.+. ++++|||||||.++
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~-------------------~~F~inl~~~~------~di~lH~n~rf~~~----- 50 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDA-------------------KRFSINLLTGG------DDIALHFNPRFNEN----- 50 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCC-------------------CEEEEEeecCC------CCEEEEEeccCCCC-----
Confidence 3567999999999999999999753 69999999752 58999999999875
Q ss_pred EEEEecccCCceeceEeecCCCCCCCCCccccchhhhhhhccccccccccccccccccccccccCCCCCCCCCCCCCCCe
Q 007392 282 VIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEGRL 361 (605)
Q Consensus 282 vIv~NT~~~~~WG~eeRc~g~~s~~~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~fPF~~G~~ 361 (605)
+||+||+.+|.||.|||+ ..|||++|++
T Consensus 51 ~iV~Ns~~~g~Wg~Eer~----------------------------------------------------~~~Pf~~g~~ 78 (128)
T smart00276 51 KIVCNSKLNGSWGSEERE----------------------------------------------------GGFPFQPGQP 78 (128)
T ss_pred EEEEeCccCCccchheEc----------------------------------------------------CCCCCCCCCE
Confidence 999999999999999998 3699999999
Q ss_pred EEEEEEEecceEEEEECCeEEEEecCCCCCccCCceeeEEecceeeeeeec
Q 007392 362 FILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYA 412 (605)
Q Consensus 362 F~ltI~ag~egfhv~VnGrh~tsF~yR~~~~le~vt~l~V~GDv~l~sV~a 412 (605)
|+|+|.++.++|+|+|||+|+++|+||.+ +++|+.|.|.||++|++|.+
T Consensus 79 F~l~i~~~~~~f~i~vng~~~~~f~~R~~--~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 79 FDLTIIVQPDHFQIFVNGVHITTFPHRLP--LESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEEEEEEcCCEEEEEECCEeEEEecCCCC--cccEeEEEEeCCEEEEEEEE
Confidence 99999999999999999999999999996 59999999999999999975
No 6
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=1.7e-29 Score=231.35 Aligned_cols=133 Identities=36% Similarity=0.557 Sum_probs=119.6
Q ss_pred CeeEEeccCCCCCCEEEEEEEcCCCcccccchhhcccCCCCccccceEEEEeccCcCCCCCCCCeeEEEeeeeCCCCCCC
Q 007392 201 DRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSHR 280 (605)
Q Consensus 201 ~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~g~~~v~~~~F~VeL~g~~~~~~~~p~iiLHfNpRl~gd~s~~ 280 (605)
+|+..||+||.+|+.|+|.|++...+ ++|.|||+++. ..+.++++|||||||.. +
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~-------------------~~f~inl~~~~--~~~~~~i~lH~~~rf~~----~ 55 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDA-------------------KRFSINLQTGP--NDPDDDIALHFNPRFDE----Q 55 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTS-------------------SBEEEEEEES---STTTTEEEEEEEEECTT----E
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCC-------------------CEEEEEecCCC--cCCCCCEEEEEEEEeCC----C
Confidence 58899999999999999999999653 69999999874 34678999999999998 1
Q ss_pred CEEEEecccCCceeceEeecCCCCCCCCCccccchhhhhhhccccccccccccccccccccccccCCCCCCCCCCCCCCC
Q 007392 281 PVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEGR 360 (605)
Q Consensus 281 pvIv~NT~~~~~WG~eeRc~g~~s~~~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~fPF~~G~ 360 (605)
.+||+||+.+|.||.|||+ ..|||.+|+
T Consensus 56 ~~iv~Ns~~~g~Wg~Ee~~----------------------------------------------------~~~pf~~g~ 83 (133)
T PF00337_consen 56 NVIVRNSRINGKWGQEERE----------------------------------------------------SPFPFQPGQ 83 (133)
T ss_dssp EEEEEEEEETTEE-SEEEE----------------------------------------------------SSTSSTTTS
T ss_pred ceEEEeceECCEeccceee----------------------------------------------------eeeeecCCc
Confidence 3999999999999999996 479999999
Q ss_pred eEEEEEEEecceEEEEECCeEEEEecCCCCCccCCceeeEEecceeeeeeec
Q 007392 361 LFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYA 412 (605)
Q Consensus 361 ~F~ltI~ag~egfhv~VnGrh~tsF~yR~~~~le~vt~l~V~GDv~l~sV~a 412 (605)
+|+|+|.++.++|+|+|||+|+++|+||+++ ++|+.|.|.||++|+||++
T Consensus 84 ~F~i~I~~~~~~f~I~vng~~~~~F~~R~~~--~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 84 PFEIRIRVEEDGFKIYVNGKHFCSFPHRLPL--SSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EEEEEEEEESSEEEEEETTEEEEEEE-SSCG--GGEEEEEEEESEEEEEEEE
T ss_pred eEEEEEEEecCeeEEEECCeEEEEeeCcCCH--HHcCEEEEECCEEEEEEEC
Confidence 9999999999999999999999999999864 9999999999999999974
No 7
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.96 E-value=4.6e-29 Score=228.01 Aligned_cols=127 Identities=36% Similarity=0.552 Sum_probs=116.8
Q ss_pred CeeEEeccCCCCCCEEEEEEEcCCCcccccchhhcccCCCCccccceEEEEeccCcCCCCCCCCeeEEEeeeeCCCCCCC
Q 007392 201 DRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSHR 280 (605)
Q Consensus 201 ~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~g~~~v~~~~F~VeL~g~~~~~~~~p~iiLHfNpRl~gd~s~~ 280 (605)
++...|||||.+|+.|+|.|+|..++ ++|.|||+++. .+++|||||||..+
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~-------------------~~f~Inl~~~~------~~i~lH~n~rf~~~---- 51 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNA-------------------KRFSINLGTGS------SDIALHFNPRFDEN---- 51 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCC-------------------CEEEEEEecCC------CCEEEEEeeeCCCC----
Confidence 35678999999999999999999763 69999999853 27999999999985
Q ss_pred CEEEEecccCCceeceEeecCCCCCCCCCccccchhhhhhhccccccccccccccccccccccccCCCCCCCCCCCCCCC
Q 007392 281 PVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEGR 360 (605)
Q Consensus 281 pvIv~NT~~~~~WG~eeRc~g~~s~~~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~fPF~~G~ 360 (605)
+||+||+.+|.||.|||+. .|||.+|+
T Consensus 52 -~IV~Ns~~~g~Wg~Eer~~----------------------------------------------------~~pf~~g~ 78 (127)
T cd00070 52 -VIVRNSFLNGNWGPEERSG----------------------------------------------------GFPFQPGQ 78 (127)
T ss_pred -EEEEcCCCCCEecHhhccC----------------------------------------------------CCCCCCCC
Confidence 9999999999999999993 69999999
Q ss_pred eEEEEEEEecceEEEEECCeEEEEecCCCCCccCCceeeEEecceeeeeee
Q 007392 361 LFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVY 411 (605)
Q Consensus 361 ~F~ltI~ag~egfhv~VnGrh~tsF~yR~~~~le~vt~l~V~GDv~l~sV~ 411 (605)
.|+|+|.++.++|+|+|||+|+++|+||.+ +++|+.|.|.||+.+++|.
T Consensus 79 ~F~l~i~~~~~~f~i~vng~~~~~F~~R~~--~~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 79 PFELTILVEEDKFQIFVNGQHFFSFPHRLP--LESIDYLSINGDVSLTSVE 127 (127)
T ss_pred eEEEEEEEcCCEEEEEECCEeEEEecCcCC--hhhEEEEEEeCCEEEEEeC
Confidence 999999999999999999999999999996 4999999999999999973
No 8
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.95 E-value=8.4e-28 Score=253.39 Aligned_cols=158 Identities=28% Similarity=0.412 Sum_probs=140.0
Q ss_pred ccccccCCCCCCCCceEEEEEEcCCCC--HHHHHHHHHHhcccCccC------CCCeEEEEEEeeCCCh--hHHHHHHHH
Q 007392 430 MSSKWKAEPLPARPVHLFIGVLSATNH--FAERMAIRKTWMQSSKIK------SSNVVARFFVALNPRK--EVNAVLKKE 499 (605)
Q Consensus 430 ~~~~~kapp~c~~~v~LlIgV~Sap~n--f~rR~aIRkTW~q~~~i~------~~~V~vrFfVG~~~~~--~~n~~L~eE 499 (605)
...+|+. ++..+++||.|..++ |.||+++|+||+++..+. .+.+.++||||+|++. ++++.|++|
T Consensus 71 ~~~~w~~-----~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eE 145 (382)
T PTZ00210 71 VAAVWKA-----QRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEE 145 (382)
T ss_pred HHHHhcc-----CCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHH
Confidence 4456776 678899999999999 999999999999998876 6889999999999988 999999999
Q ss_pred HhccCCEEEecc------------------cccCcchhHHHHHHHhhccc-CCCceEEEeeCCceeecHHHHHHHHHhcC
Q 007392 500 AAFFGDIVILPF------------------MDRYELVVLKTIAICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGIF 560 (605)
Q Consensus 500 ae~ygDIL~ldf------------------~DsY~NlTlKTla~l~w~~~-~~~akyVmK~DDDtFVnvd~Ll~~L~~~~ 560 (605)
+++|+|||++|| .|+|.++|+||+++|+|+.+ ||+++||||+|||+|||+++++++|+..
T Consensus 146 A~~~~DIVilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~- 224 (382)
T PTZ00210 146 AARTHDIITLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM- 224 (382)
T ss_pred HHHhCCEEEEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-
Confidence 999999999999 66677899999999999998 5599999999999999999999999875
Q ss_pred CCCceEEEEecCCCCcccCCCcccCccccCCCCCCCCceeeec
Q 007392 561 PKRSLYMGNLNLLHRPLRTGKWAVTYEVCKLCMLLCEFEFTRN 603 (605)
Q Consensus 561 ~~~~LY~G~v~~~~~P~R~sKWyVs~eeYP~~~YP~~f~~~~~ 603 (605)
+++.+|+|+++....|.|+.+ ..|..|+.|+.|
T Consensus 225 prr~LY~G~v~~~~~p~Rd~~----------PpY~~G~gYvLS 257 (382)
T PTZ00210 225 PRHGLYMGRYNYYNRIWRRNQ----------LTYVNGYCITLS 257 (382)
T ss_pred CCCceEEEeeCCCCccccCCC----------CCccccceeecc
Confidence 466799999999888998752 237678888765
No 9
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.92 E-value=1e-24 Score=204.55 Aligned_cols=137 Identities=31% Similarity=0.471 Sum_probs=120.4
Q ss_pred CCeeEEeccCCCCCCEEEEEEEcCCCcccccchhhcccCCCCccccceEEEEeccCcCCCCCCCCeeEEEeeeeCCCCCC
Q 007392 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (605)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~g~~~v~~~~F~VeL~g~~~~~~~~p~iiLHfNpRl~gd~s~ 279 (605)
.++...++++|..|+.+++.|.+..+.+ .+|.++++.+-..+. +.+|+|||||||.+.
T Consensus 4 ~p~~~~~~~~l~~g~~~~~~g~~~~~~~------------------~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~--- 61 (143)
T KOG3587|consen 4 VPFPVPIPSGLPPGSQVTIKGLVLYGIP------------------KRFAVNLRFGTNLDS-DSDIALHFNPRFDEK--- 61 (143)
T ss_pred cccccccccCcCCCcEEEEEEEEcccCC------------------CcceeeeEeecccCC-CCcEEEEEeccCCCC---
Confidence 4567778999999999999999997642 466666666544433 567999999999997
Q ss_pred CCEEEEecccCCceeceEeecCCCCCCCCCccccchhhhhhhccccccccccccccccccccccccCCCCCCCCCCCCCC
Q 007392 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (605)
Q Consensus 280 ~pvIv~NT~~~~~WG~eeRc~g~~s~~~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~fPF~~G 359 (605)
.||+||+.+|.||.|||+. .+||+.|
T Consensus 62 --~VVrNs~~~g~Wg~eE~~~----------------------------------------------------~~PF~~g 87 (143)
T KOG3587|consen 62 --GVVRNSLINGEWGLEEREG----------------------------------------------------GNPFQPG 87 (143)
T ss_pred --eEEEecccCCccCchhhcC----------------------------------------------------CCCCCCC
Confidence 6999999999999999983 6999999
Q ss_pred CeEEEEEEEecceEEEEECCeEEEEecCCCCCccCCceeeEEecceeeeeeeccC
Q 007392 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATN 414 (605)
Q Consensus 360 ~~F~ltI~ag~egfhv~VnGrh~tsF~yR~~~~le~vt~l~V~GDv~l~sV~a~s 414 (605)
++|.|+|.++.+.|+|.|||.|+++|+||++ +..+..|.|+||++|.+|.+..
T Consensus 88 ~~F~l~I~~~~~~~~I~VNg~~f~~y~HR~p--~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 88 QPFDLTILVEEDKFQIFVNGVHFADYPHRIP--PSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred CeEEEEEEEccCeEEEEECCEEEEeecCCCC--ChheeEEEEeeeEEEEEEEEEc
Confidence 9999999999999999999999999999997 5999999999999999998764
No 10
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.91 E-value=6.6e-24 Score=213.29 Aligned_cols=156 Identities=26% Similarity=0.366 Sum_probs=139.2
Q ss_pred CCCceEEEEEEcCCCCHHHHHHHHHHhcccCc-----cCCCCeEEEEEEee-CCChhHHHHHHHHHhccCCEEEec-ccc
Q 007392 441 ARPVHLFIGVLSATNHFAERMAIRKTWMQSSK-----IKSSNVVARFFVAL-NPRKEVNAVLKKEAAFFGDIVILP-FMD 513 (605)
Q Consensus 441 ~~~v~LlIgV~Sap~nf~rR~aIRkTW~q~~~-----i~~~~V~vrFfVG~-~~~~~~n~~L~eEae~ygDIL~ld-f~D 513 (605)
.+.++++|+|.|+++...||+.||+|||.... -....|.++|++|. +........|++|.++|+|.+++| .+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 46789999999999999999999999998732 23578999999998 556788999999999999999999 999
Q ss_pred cCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEecCCCCccc-CCCcccCccccCCC
Q 007392 514 RYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLR-TGKWAVTYEVCKLC 592 (605)
Q Consensus 514 sY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~~~~~LY~G~v~~~~~P~R-~sKWyVs~eeYP~~ 592 (605)
.|.+++.||+++|.++.++.+++|++|+|||+|||++.|...|..+.....+|+|++..+..+-+ .+|||.|+ |...
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe--Wkfg 165 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE--WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh--hhcC
Confidence 99999999999999999999999999999999999999999999887778999999998877777 59999995 8766
Q ss_pred CCCCCc
Q 007392 593 MLLCEF 598 (605)
Q Consensus 593 ~YP~~f 598 (605)
.+=.||
T Consensus 166 ~~g~Yf 171 (274)
T KOG2288|consen 166 DNGNYF 171 (274)
T ss_pred cccccc
Confidence 553344
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=98.77 E-value=7e-09 Score=106.02 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=66.8
Q ss_pred eEEEEEEcCCCCHHHH-HHHHHHhcccCccCCCCeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHH
Q 007392 445 HLFIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTI 523 (605)
Q Consensus 445 ~LlIgV~Sap~nf~rR-~aIRkTW~q~~~i~~~~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTl 523 (605)
.++|+|+|++++...| .+|.+||++... .. .|+..-..+..+ ..+ ...+++..+....+....++.+
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~----~~--~~ifsd~~d~~l----~~~--~~~~l~~~~~~~~~~~~~~~~~ 74 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN----KQ--TFIFSDAEDPSL----PTV--TGVHLVNPNCDAGHCRKTLSCK 74 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG----GG--EEEEESS--HHH----HHH--HGGGEEE-------------HH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC----Cc--eEEecCcccccc----ccc--cccccccCCCcchhhHHHHHHH
Confidence 5789999999776666 899999999874 22 343333333332 222 3345666665555555555555
Q ss_pred HHHhhccc-CCCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEecCC
Q 007392 524 AICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLL 573 (605)
Q Consensus 524 a~l~w~~~-~~~akyVmK~DDDtFVnvd~Ll~~L~~~~~~~~LY~G~v~~~ 573 (605)
+.++|-.. ..+++|++++|||+||++++|..+|...++.+++|+|+-...
T Consensus 75 ~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~ 125 (252)
T PF02434_consen 75 MAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGD 125 (252)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE--
T ss_pred HHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccC
Confidence 55555332 357899999999999999999999999999999999987543
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.38 E-value=5e-07 Score=97.31 Aligned_cols=114 Identities=21% Similarity=0.364 Sum_probs=89.5
Q ss_pred CCceEEEEEEcCCCCHHHH-HHHHHHhcccCccCCCCeEEEEEEe-eCCChhHHHHHHHHHhccCCEEEecccccCcchh
Q 007392 442 RPVHLFIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFVA-LNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVV 519 (605)
Q Consensus 442 ~~v~LlIgV~Sap~nf~rR-~aIRkTW~q~~~i~~~~V~vrFfVG-~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlT 519 (605)
.+..+++.|++.+.+...| .++-+||++.... ..|+-- .+. +...+. .|..+..|+|+++.
T Consensus 89 r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~------~~f~s~~~s~----------~~~~f~-~v~~~~~~g~~~~~ 151 (364)
T KOG2246|consen 89 RSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK------GIFFSPTLSK----------DDSRFP-TVYYNLPDGYRSLW 151 (364)
T ss_pred CCceEEEEEEecCcCceeehhhhhcccccccCc------ceecCccCCC----------CCCcCc-eeeccCCcchHHHH
Confidence 4678889999888777766 5999999987641 122210 111 111122 44788999999999
Q ss_pred HHHHHHHhhcccC--CCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEecC
Q 007392 520 LKTIAICEFGVQN--VTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNL 572 (605)
Q Consensus 520 lKTla~l~w~~~~--~~akyVmK~DDDtFVnvd~Ll~~L~~~~~~~~LY~G~v~~ 572 (605)
.||..+++|+..+ .++++++|+|||||+.+++|...|.+.++.+++|+|+...
T Consensus 152 ~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~ 206 (364)
T KOG2246|consen 152 RKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK 206 (364)
T ss_pred HHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc
Confidence 9999999999853 4899999999999999999999999999999999998644
No 13
>PLN03153 hypothetical protein; Provisional
Probab=95.86 E-value=0.02 Score=64.51 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEecCC
Q 007392 532 NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLL 573 (605)
Q Consensus 532 ~~~akyVmK~DDDtFVnvd~Ll~~L~~~~~~~~LY~G~v~~~ 573 (605)
.+++++++++|||||+.+++|+..|..+++.++.|+|.....
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~ 249 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES 249 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc
Confidence 589999999999999999999999999999999999976544
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.93 E-value=1.6 Score=49.49 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=70.0
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhcccCccCCCCeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHH-
Q 007392 445 HLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTI- 523 (605)
Q Consensus 445 ~LlIgV~Sap~nf~rR~aIRkTW~q~~~i~~~~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTl- 523 (605)
.|+++|++.. .---+|.+|-+.... ++.||.+.+.- -.|.-++..+-.|+.-..|+.
T Consensus 27 rl~~aVmte~---tlA~a~NrT~ahhvp------rv~~F~~~~~i-------------~~~~a~~~~vs~~d~r~~~~~s 84 (681)
T KOG3708|consen 27 RLMAAVMTES---TLALAINRTLAHHVP------RVHLFADSSRI-------------DNDLAQLTNVSPYDLRGQKTHS 84 (681)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhhcc------eeEEeeccccc-------------cccHhhccccCccccCccccHH
Confidence 4667777722 444577777666542 56778775431 123334444455555445554
Q ss_pred HHHhhcccC--CCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEE
Q 007392 524 AICEFGVQN--VTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMG 568 (605)
Q Consensus 524 a~l~w~~~~--~~akyVmK~DDDtFVnvd~Ll~~L~~~~~~~~LY~G 568 (605)
+.+.+++.+ -+++|++-+-|+|||+...|++.+-..+-..++|+|
T Consensus 85 ~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymG 131 (681)
T KOG3708|consen 85 MVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMG 131 (681)
T ss_pred HHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccc
Confidence 446777764 489999999999999999999999888888999998
No 15
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=66.18 E-value=30 Score=30.50 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=47.5
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L 556 (605)
...+.++-..+ +.+....+++-.+....+.++...++. ... ..+..+.+....+|++.+|||.++..+.|...+
T Consensus 27 ~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~ 100 (169)
T PF00535_consen 27 DFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-GFS----AARNRGIKHAKGEYILFLDDDDIISPDWLEELV 100 (169)
T ss_dssp EEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HHHHHHHHH--SSEEEEEETTEEE-TTHHHHHH
T ss_pred CEEEEEecccc-ccccccccccccccccccccccccccc-ccc----ccccccccccceeEEEEeCCCceEcHHHHHHHH
Confidence 34444333333 444445555555546667776666554 222 334444455566799999999999977666655
Q ss_pred HhcCC-CCceEEEEe
Q 007392 557 EGIFP-KRSLYMGNL 570 (605)
Q Consensus 557 ~~~~~-~~~LY~G~v 570 (605)
+.... ...+.+|..
T Consensus 101 ~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 101 EALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHCTTEEEEEEE
T ss_pred HHHHhCCCcEEEEEE
Confidence 54432 334555544
No 16
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=61.53 E-value=63 Score=30.40 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=49.6
Q ss_pred eEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHHH
Q 007392 478 VVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 557 (605)
Q Consensus 478 V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~ 557 (605)
..++++.-.+.+......+++-.+.+. +.++....+.- + -..+..+.+..+.+|++.+|+|.++..+.|...++
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n~G----~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKNRG----L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCcccc----H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHH
Confidence 344333322324444444555455565 55554333311 1 13355556667899999999999999888877776
Q ss_pred hc--CCCCceEEEEe
Q 007392 558 GI--FPKRSLYMGNL 570 (605)
Q Consensus 558 ~~--~~~~~LY~G~v 570 (605)
.. .+.-.++.|.+
T Consensus 104 ~~~~~~~~~~~~~~~ 118 (201)
T cd04195 104 FIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHhCCCeEEEcccE
Confidence 53 23344555544
No 17
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=60.80 E-value=57 Score=30.35 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=53.0
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L 556 (605)
.+.++.+-..+.+. ....+++..+++..+.++....++. |. .+++.+.++...+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCcc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 34444444333332 2334444445566676665543332 21 334445555667999999999999888777777
Q ss_pred HhcCCCCceEEEEecC
Q 007392 557 EGIFPKRSLYMGNLNL 572 (605)
Q Consensus 557 ~~~~~~~~LY~G~v~~ 572 (605)
+.......+.+|....
T Consensus 103 ~~~~~~~~~v~g~~~~ 118 (181)
T cd04187 103 AKWEEGYDVVYGVRKN 118 (181)
T ss_pred HHHhCCCcEEEEEecC
Confidence 7654455677776543
No 18
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=59.45 E-value=12 Score=35.50 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=20.6
Q ss_pred cccccccCCCCCCCCCCCCCCCeEEEEEEEecc---------eEEEEECC
Q 007392 339 KRFIGREQKPEVTWPFPFVEGRLFILTLRAGVE---------GYHINVGG 379 (605)
Q Consensus 339 ~r~~~~~~~~~~~~~fPF~~G~~F~ltI~ag~e---------gfhv~VnG 379 (605)
-||+||.. .|+.|.|||..... .++|+|||
T Consensus 87 LRFvGRSG-----------RGKsFtltItv~t~PpqvAty~~AIKVTVDG 125 (135)
T PF00853_consen 87 LRFVGRSG-----------RGKSFTLTITVFTNPPQVATYHRAIKVTVDG 125 (135)
T ss_dssp -EECST-T-----------TTSEEEEEEEE-SSS-EEEEECCEEEEESS-
T ss_pred cccccccC-----------CccceEEEEEEeCCCchHHhheeeEEEEecC
Confidence 48899888 69999999987654 45566666
No 19
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=57.87 E-value=35 Score=32.94 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=56.0
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcccCccCCCCeEEEEEEeeCCChhHHHHHHHHHhccCCE--EEecccccCcchhHHHH
Q 007392 446 LFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDI--VILPFMDRYELVVLKTI 523 (605)
Q Consensus 446 LlIgV~Sap~nf~rR~aIRkTW~q~~~i~~~~V~vrFfVG~~~~~~~n~~L~eEae~ygDI--L~ldf~DsY~NlTlKTl 523 (605)
+.|+|.+....-.-+..|+.--.+.. .++.+.++... .+.+....+++-.+.|.++ .++....+. ....|.-
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~----~~~~v~vvd~~-~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~-g~~~k~~ 76 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDY----PRLEVVVVDDG-SDDETAEILRALAARYPRVRVRVIRRPRNP-GPGGKAR 76 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHH----HTEEEEEEEE--SSS-GCTTHHHHHHTTGG-GEEEEE----H-HHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCC----CCeEEEEEECC-CChHHHHHHHHHHHHcCCCceEEeecCCCC-CcchHHH
Confidence 44555554443445556665444321 34555555533 3333334555555556543 333222111 1112333
Q ss_pred HHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhc-CCCCceEEEEec
Q 007392 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI-FPKRSLYMGNLN 571 (605)
Q Consensus 524 a~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~-~~~~~LY~G~v~ 571 (605)
.+.++.+..+.+||+.+|||+.+..+.|...+... .+.-.+..|.+.
T Consensus 77 -a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~ 124 (228)
T PF13641_consen 77 -ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVF 124 (228)
T ss_dssp -HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEE
T ss_pred -HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEe
Confidence 34555555679999999999999988888777665 444455556553
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=55.43 E-value=1.3e+02 Score=32.54 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=46.6
Q ss_pred EEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhc
Q 007392 483 FVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI 559 (605)
Q Consensus 483 fVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~ 559 (605)
++.-.++.+..+.+++-++.|..+.+....+ |.. |. ..++.+.+..+.+|++..|+|+.+..+.|...++..
T Consensus 88 VvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 88 AINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred EEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 3333333344455665566677676665333 322 33 345566666789999999999999999888877654
No 21
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=53.67 E-value=71 Score=27.97 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhc
Q 007392 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI 559 (605)
Q Consensus 524 a~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~ 559 (605)
....++.+..+.+|++.+|+|.++..+.|...+...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHh
Confidence 344555556689999999999999877676664443
No 22
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=52.95 E-value=68 Score=29.54 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHHHh-cCCCCceEEEE
Q 007392 491 EVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEG-IFPKRSLYMGN 569 (605)
Q Consensus 491 ~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~-~~~~~~LY~G~ 569 (605)
.....+++-...+..+.++....+... -..+..+.+....+|++.+|+|..+..+.|...+.. ......+..|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~n~G~-----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 41 GTAEIARELAARVPRVRVIRLSRNFGK-----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ChHHHHHHHHHhCCCeEEEEccCCCCc-----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 334455555556666655555544321 134444555555699999999999998888888875 34445666675
Q ss_pred ec
Q 007392 570 LN 571 (605)
Q Consensus 570 v~ 571 (605)
..
T Consensus 116 ~~ 117 (185)
T cd04179 116 RF 117 (185)
T ss_pred ee
Confidence 43
No 23
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.51 E-value=2.1e+02 Score=27.11 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=40.5
Q ss_pred cCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEe
Q 007392 503 FGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNL 570 (605)
Q Consensus 503 ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~-~~~~LY~G~v 570 (605)
+..+.++.... -.+. -|. ..+.++.+.++.+||+.+|+|..+..+.|...+.... ....++.|..
T Consensus 54 ~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 119 (229)
T cd04192 54 NFQLKILNNSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPV 119 (229)
T ss_pred CcceEEeeccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeee
Confidence 34455555443 1222 222 3356666667899999999999998887777776432 3344555654
No 24
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.54 E-value=1.4e+02 Score=27.97 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=48.5
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccC-CEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFG-DIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKE 555 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~yg-DIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~ 555 (605)
.+.++++-..+.+ +....+++-+..|. .+.+.....+.-. ...+..+....+.+||+..|+|.++..+.|...
T Consensus 27 ~~eiiVvddgS~d-~t~~~~~~~~~~~~~~~~~~~~~~~~G~-----~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTD-GTVEIIKEYIDKDPFIIILIRNGKNLGV-----ARNFESLLQAADGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCC-CcHHHHHHHHhcCCceEEEEeCCCCccH-----HHHHHHHHHhCCCCEEEEECCCcccChhHHHHH
Confidence 4555555543433 23344554445554 3444433333211 123334455678999999999999988888777
Q ss_pred HHh-c-CCCCceEEEE
Q 007392 556 IEG-I-FPKRSLYMGN 569 (605)
Q Consensus 556 L~~-~-~~~~~LY~G~ 569 (605)
++. . .+...++.|.
T Consensus 101 ~~~~~~~~~~~~~~~~ 116 (214)
T cd04196 101 LKAFLKDDKPLLVYSD 116 (214)
T ss_pred HHHHhcCCCceEEecC
Confidence 775 2 3333455554
No 25
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=41.44 E-value=27 Score=38.55 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=25.1
Q ss_pred cccccccCCCCCCCCCCCCCCCeEEEEEEEec---------ceEEEEECCe
Q 007392 339 KRFIGREQKPEVTWPFPFVEGRLFILTLRAGV---------EGYHINVGGR 380 (605)
Q Consensus 339 ~r~~~~~~~~~~~~~fPF~~G~~F~ltI~ag~---------egfhv~VnGr 380 (605)
-||.||.. +|+.|+|||.+.. ..++|+|||-
T Consensus 184 LRFVGRSG-----------RGKsFtLTIti~TnP~qvATy~kaIKVTVDGP 223 (475)
T KOG3982|consen 184 LRFVGRSG-----------RGKSFTLTITIFTNPPQVATYHKAIKVTVDGP 223 (475)
T ss_pred ceeecccC-----------CCcceEEEEEEecCCcceeeeeceEEEeccCC
Confidence 47899988 7999999998753 4677888883
No 26
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=40.39 E-value=4.1e+02 Score=28.59 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=60.6
Q ss_pred CCceEEEEEEcCCCCHHHHHHHHHHhcc----cCccCCCCeEEEEEEeeCCC---hhHHHHHHHHHhc---cCCEEEecc
Q 007392 442 RPVHLFIGVLSATNHFAERMAIRKTWMQ----SSKIKSSNVVARFFVALNPR---KEVNAVLKKEAAF---FGDIVILPF 511 (605)
Q Consensus 442 ~~v~LlIgV~Sap~nf~rR~aIRkTW~q----~~~i~~~~V~vrFfVG~~~~---~~~n~~L~eEae~---ygDIL~ldf 511 (605)
.+..|.|||.|..... -..+..|-++ ....+...+.++.++|-..- ..+...|..+-.. -|-|.++.-
T Consensus 50 ~~~~L~IGIpTV~R~~--~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~ 127 (297)
T PF04666_consen 50 TGKKLCIGIPTVKREK--ESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISP 127 (297)
T ss_pred CCCeEEEEecccccCC--CchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEec
Confidence 4455999999965321 2334444332 22223456766666664431 2222333322111 233444443
Q ss_pred cccCcc-h--------------hHHHHHHHhhcc--cCC--CceEEEeeCCceeecH---HHHHHHHHhcCCCCceEEE
Q 007392 512 MDRYEL-V--------------VLKTIAICEFGV--QNV--TAAYIMKCDDDTFIRV---DAVLKEIEGIFPKRSLYMG 568 (605)
Q Consensus 512 ~DsY~N-l--------------TlKTla~l~w~~--~~~--~akyVmK~DDDtFVnv---d~Ll~~L~~~~~~~~LY~G 568 (605)
..+|+. + .+.+..-+.|+. .+| .++|+|-..||+.... ..+...+........+|+-
T Consensus 128 p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~~~W~~Le 206 (297)
T PF04666_consen 128 PPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWESKDWLYLE 206 (297)
T ss_pred ccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhcCCCceEEE
Confidence 433321 1 122222222222 223 6789999999998863 4445555555445556643
No 27
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=39.65 E-value=3.5e+02 Score=29.93 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=48.0
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L 556 (605)
+..+.++-.. ++.+..+.+++..+++..+.+..... |.. |. ..++.+.+..+.+|++..|.|+.+..+.+...+
T Consensus 104 ~~eIivVdDg-s~D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 104 NIEVIAINDG-SSDDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred CeEEEEEECC-CCccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHH
Confidence 4444333332 23334455555556676666554322 222 32 456666667789999999999999999888877
Q ss_pred Hhc
Q 007392 557 EGI 559 (605)
Q Consensus 557 ~~~ 559 (605)
+..
T Consensus 178 ~~~ 180 (444)
T PRK14583 178 APL 180 (444)
T ss_pred HHH
Confidence 654
No 28
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=39.56 E-value=91 Score=33.47 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCCEEEecccc--cCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHH
Q 007392 493 NAVLKKEAAFFGDIVILPFMD--RYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (605)
Q Consensus 493 n~~L~eEae~ygDIL~ldf~D--sY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L 556 (605)
...|++=....--++.+++.+ .+..-+.--.++..|.++.|...+|+.+|-|+|...|+.++.|
T Consensus 51 d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l 116 (346)
T COG4092 51 DRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKML 116 (346)
T ss_pred HHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHH
Confidence 355555555555677777764 3444455556778899988999999999999999999999887
No 29
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=38.06 E-value=2.5e+02 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHhhcccCC--CceEEEeeCCceeecHHHHHHHHHhcC
Q 007392 524 AICEFGVQNV--TAAYIMKCDDDTFIRVDAVLKEIEGIF 560 (605)
Q Consensus 524 a~l~w~~~~~--~akyVmK~DDDtFVnvd~Ll~~L~~~~ 560 (605)
..+.++.+.. +++||+.+|+|+.+..+.|...+....
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 3456665543 479999999999999988888876653
No 30
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=37.91 E-value=1.1e+02 Score=32.84 Aligned_cols=106 Identities=19% Similarity=0.307 Sum_probs=63.0
Q ss_pred eeEEEeeeeCCCCCCCCEEEEecccC-CceeceEeecCCCCCCCCCccccchhhhhhhcccccccccccccccccccccc
Q 007392 265 KILHLNPRIKGDWSHRPVIEHNTCYR-MQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIG 343 (605)
Q Consensus 265 iiLHfNpRl~gd~s~~pvIv~NT~~~-~~WG~eeRc~g~~s~~~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~r~~~ 343 (605)
|.+.| |-|.. |+ .+.|--+-| .-|--+..-+..++..+ .+||=..|-+. +
T Consensus 75 IP~~F-PQFG~-~g---~l~qHGFaRn~~W~v~~~p~~lp~~~~--a~Vdl~Lk~~~----~------------------ 125 (305)
T KOG1594|consen 75 IPICF-PQFGN-FG---SLPQHGFARNRFWEVENNPPPLPSLGK--ATVDLILKSSE----D------------------ 125 (305)
T ss_pred cceEe-eccCC-CC---cccccccccceeeEeccCCCCCCcCCc--eeEEEEecCCh----h------------------
Confidence 55555 77753 32 456666554 67877766554442222 24444333321 1
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEEEEecceEEEE-----ECCeEE-EEecCCCCCccCCceeeEEecceee
Q 007392 344 REQKPEVTWPFPFVEGRLFILTLRAGVEGYHIN-----VGGRHV-TSFPYRTGFTLEDATGLAIKGDVDI 407 (605)
Q Consensus 344 ~~~~~~~~~~fPF~~G~~F~ltI~ag~egfhv~-----VnGrh~-tsF~yR~~~~le~vt~l~V~GDv~l 407 (605)
...-|+|-| .|.++|..+.+..+.+ .|++.+ .+|.|++=|...||.+++|.|--.+
T Consensus 126 ----~~kiWp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~tl 187 (305)
T KOG1594|consen 126 ----DLKIWPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLETL 187 (305)
T ss_pred ----hhhhCCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEeccccc
Confidence 011267665 4677777774444433 277877 6899999888899999999984433
No 31
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.77 E-value=2.4e+02 Score=26.55 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=30.1
Q ss_pred HHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEe
Q 007392 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNL 570 (605)
Q Consensus 525 ~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~-~~~~LY~G~v 570 (605)
+++++. ..+.+|++..|||..+..+.+...+.... +.-.++.|..
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 116 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLV 116 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEeccee
Confidence 445554 45789999999999999777766665543 3334554544
No 32
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=33.78 E-value=4.6e+02 Score=25.59 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=58.6
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhcccCccCCCCeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHH
Q 007392 445 HLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIA 524 (605)
Q Consensus 445 ~LlIgV~Sap~nf~rR~aIRkTW~q~~~i~~~~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla 524 (605)
.+-|+|.+.-..-.-...|+.-..|... .....++++.-.+.+ .....+++-.+. .+.+....++. . |. .
T Consensus 30 ~isVvip~~n~~~~l~~~l~si~~q~~~--~~~~eiivvdd~s~d-~t~~~~~~~~~~--~v~~i~~~~~~---g-~~-~ 99 (251)
T cd06439 30 TVTIIIPAYNEEAVIEAKLENLLALDYP--RDRLEIIVVSDGSTD-GTAEIAREYADK--GVKLLRFPERR---G-KA-A 99 (251)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHhCcCC--CCcEEEEEEECCCCc-cHHHHHHHHhhC--cEEEEEcCCCC---C-hH-H
Confidence 4445555543333334555554544321 112444444432222 233333333232 45554333322 1 32 3
Q ss_pred HHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEec
Q 007392 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLN 571 (605)
Q Consensus 525 ~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~-~~~~LY~G~v~ 571 (605)
.+..+.+..+.+|++.+|+|+++..+.|.+.++... +.-.+..|...
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 344455555679999999999999777777666653 33445556553
No 33
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.47 E-value=3.4e+02 Score=23.99 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=23.5
Q ss_pred cCCCceEEEeeCCceeecHHHHHHHHHh
Q 007392 531 QNVTAAYIMKCDDDTFIRVDAVLKEIEG 558 (605)
Q Consensus 531 ~~~~akyVmK~DDDtFVnvd~Ll~~L~~ 558 (605)
++.+.+|++.+|||.++..+.+...++.
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHH
Confidence 3448899999999999998888887764
No 34
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=33.26 E-value=1.7e+02 Score=28.41 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=31.8
Q ss_pred HHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC-CCCceE
Q 007392 521 KTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLY 566 (605)
Q Consensus 521 KTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~-~~~~LY 566 (605)
|.-..........+++|++..|+|+.++.+.|...+.... +...+.
T Consensus 18 Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglV 64 (175)
T PF13506_consen 18 KVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLV 64 (175)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEE
Confidence 5444443333237899999999999999999888887654 333343
No 35
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=31.30 E-value=5.2e+02 Score=25.42 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=29.9
Q ss_pred HHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC
Q 007392 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF 560 (605)
Q Consensus 524 a~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~ 560 (605)
..+.++.+..+.+||+.+|+|+.+..+.|.+.++...
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 4556666667789999999999999999988887653
No 36
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=30.75 E-value=2.7e+02 Score=26.65 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=50.9
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccCCE-EEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDI-VILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKE 555 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~ygDI-L~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~ 555 (605)
...++.+-..+.+ .....+++..+.++.. .++....+.- +. .++..+.+....+||+.+|+|.....+.+...
T Consensus 30 ~~eiivvdd~S~D-~t~~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKD-GTAEVARKLARKNPALIRVLTLPKNRG----KG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCC-chHHHHHHHHHhCCCcEEEEEcccCCC----cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 3444444443433 3344555555566654 3333332211 11 33444445566799999999999998888888
Q ss_pred HHh-cCCCCceEEEEe
Q 007392 556 IEG-IFPKRSLYMGNL 570 (605)
Q Consensus 556 L~~-~~~~~~LY~G~v 570 (605)
++. ......+.+|..
T Consensus 104 ~~~~~~~~~~~v~g~r 119 (211)
T cd04188 104 EEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHhccCCcEEEEEe
Confidence 876 334456667743
No 37
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=30.37 E-value=6.2e+02 Score=26.07 Aligned_cols=77 Identities=17% Similarity=0.053 Sum_probs=49.0
Q ss_pred CCeEEEEEEeeCCChhHHHHHHHHHhccCCE-EEe-cccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHH
Q 007392 476 SNVVARFFVALNPRKEVNAVLKKEAAFFGDI-VIL-PFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVL 553 (605)
Q Consensus 476 ~~V~vrFfVG~~~~~~~n~~L~eEae~ygDI-L~l-df~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll 553 (605)
.++.++++=+.+ ..+....|.+-.+.++-+ ++. +....+-+.+ .+..-+.+..+.+||+.+|.|+++..+.+.
T Consensus 33 ~~~eiIvvd~~s-~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGS-SDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCC-chhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 455554443333 333446777777777776 332 2222222333 345555566789999999999999999988
Q ss_pred HHHH
Q 007392 554 KEIE 557 (605)
Q Consensus 554 ~~L~ 557 (605)
..+.
T Consensus 108 ~~~~ 111 (281)
T PF10111_consen 108 KLLN 111 (281)
T ss_pred HHHH
Confidence 8888
No 38
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=30.36 E-value=3.2e+02 Score=25.07 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=28.3
Q ss_pred HHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC
Q 007392 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF 560 (605)
Q Consensus 525 ~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~ 560 (605)
.++.+.+..+.+|++..|+|..+..+-|...++...
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~ 105 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE 105 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 445555667889999999999998888777777653
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=29.22 E-value=4.7e+02 Score=24.33 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=48.6
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L 556 (605)
.+.++++-..+.+......++.....+.-+.+.....+ ... -.++.++.++...+|++..|+|..+..+.|...+
T Consensus 31 ~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~----~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 31 NWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREEN-GGI----SAATNSALELATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccC-CCH----HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHH
Confidence 34454444444444444444433444444444322211 111 2345555556678999999999999988888877
Q ss_pred Hhc--CCCCceEEEE
Q 007392 557 EGI--FPKRSLYMGN 569 (605)
Q Consensus 557 ~~~--~~~~~LY~G~ 569 (605)
+.. .+...+.+|.
T Consensus 106 ~~~~~~~~~~~v~~~ 120 (202)
T cd04184 106 KALNEHPDADLIYSD 120 (202)
T ss_pred HHHHhCCCCCEEEcc
Confidence 654 2334455453
No 40
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=29.05 E-value=5.2e+02 Score=24.77 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=37.7
Q ss_pred HHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC
Q 007392 498 KEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF 560 (605)
Q Consensus 498 eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~ 560 (605)
++...+..+.+..- ++. -|.- .+..+.++.+.+||+.+|+|+.+..+.|...++...
T Consensus 47 ~~~~~~~~~~v~~~-~~~----g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 47 SQTVKYGGIFVITV-PHP----GKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HhhccCCcEEEEec-CCC----ChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc
Confidence 34556666666642 221 2332 233444455899999999999999999888887663
No 41
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=28.38 E-value=3.3e+02 Score=25.99 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=26.8
Q ss_pred hhcccCCCceEEEeeCCceeecHHHHHHHHHhcC
Q 007392 527 EFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF 560 (605)
Q Consensus 527 ~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~ 560 (605)
..+.+..+.+|++.+|+|+++..+.|...+....
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGYFL 110 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHHHh
Confidence 4444445789999999999999888888877654
No 42
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=28.36 E-value=3e+02 Score=26.14 Aligned_cols=90 Identities=16% Similarity=0.047 Sum_probs=48.9
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccC--CEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFG--DIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLK 554 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~yg--DIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~ 554 (605)
++.++++...+.+.. ...+++-++.|. ++.+.....+. -...|.- .+..+.+..+.+|++.+|+|+.+..+.|..
T Consensus 30 ~~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHH
Confidence 456666665444332 344444445554 33333221111 1112322 234455667889999999999998888777
Q ss_pred HHHhc-CCCCceEEEE
Q 007392 555 EIEGI-FPKRSLYMGN 569 (605)
Q Consensus 555 ~L~~~-~~~~~LY~G~ 569 (605)
.+... .+.-.+..|.
T Consensus 107 l~~~~~~~~~~~v~~~ 122 (196)
T cd02520 107 MVAPLMDPGVGLVTCL 122 (196)
T ss_pred HHHHhhCCCCCeEEee
Confidence 77653 2333444454
No 43
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=28.36 E-value=3.2e+02 Score=25.98 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=30.2
Q ss_pred hcccCCCceEEEeeCCceeecHHHHHHHHHh-cCCCCceEEEEe
Q 007392 528 FGVQNVTAAYIMKCDDDTFIRVDAVLKEIEG-IFPKRSLYMGNL 570 (605)
Q Consensus 528 w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~-~~~~~~LY~G~v 570 (605)
.+.+....+|++.+|+|..+..+.|...++. ..+...+..|..
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 3334445699999999999998888887775 334455666643
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=27.38 E-value=6.2e+02 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=27.0
Q ss_pred HHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhc
Q 007392 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI 559 (605)
Q Consensus 524 a~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~ 559 (605)
.+...+.+..+.+||+..|+|+.+..+-|...+...
T Consensus 73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l 108 (299)
T cd02510 73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARI 108 (299)
T ss_pred HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHH
Confidence 445566666678999999999999877666666543
No 45
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=26.96 E-value=8.9e+02 Score=26.81 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhcC--CCCceEEEEecC
Q 007392 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF--PKRSLYMGNLNL 572 (605)
Q Consensus 524 a~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~~--~~~~LY~G~v~~ 572 (605)
.+++++.+..+.+||+.+|+|..+..+.+.+.++... +.-....|.+..
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~ 171 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILT 171 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEec
Confidence 3456666777889999999999999998888876543 233334455543
No 46
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=25.40 E-value=6.1e+02 Score=24.31 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=48.6
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L 556 (605)
+..+.++-..+. .+....++...+.+..+.+..-... . +. .++..+.+..+.+|++.+|+|..+..+.|...+
T Consensus 31 ~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~----~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPKR----I-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCCC----C-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHHH
Confidence 445554444333 3344455555455444555532221 1 11 345666665689999999999999877777777
Q ss_pred HhcC-CCCceEEEEe
Q 007392 557 EGIF-PKRSLYMGNL 570 (605)
Q Consensus 557 ~~~~-~~~~LY~G~v 570 (605)
+... +...+..|..
T Consensus 104 ~~~~~~~~~~v~~~~ 118 (249)
T cd02525 104 EALKRTGADNVGGPM 118 (249)
T ss_pred HHHhcCCCCEEecce
Confidence 5432 2333444543
No 47
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=23.69 E-value=9.3e+02 Score=25.88 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=45.8
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccCC--EEEecccccCcchhHHHHHHHhhcccCCCceEEEeeCCceeecHHHHHH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFGD--IVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLK 554 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~ygD--IL~ldf~DsY~NlTlKTla~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~ 554 (605)
+..++|+...+.+.. ...+++=++.|.+ |.++.-.+. .....|.-+..+ +.+..+.+|++.+|+|+.+..+.|..
T Consensus 70 ~~EIivvdd~s~D~t-~~iv~~~~~~~p~~~i~~v~~~~~-~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~ 146 (373)
T TIGR03472 70 GFQMLFGVQDPDDPA-LAVVRRLRADFPDADIDLVIDARR-HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQ 146 (373)
T ss_pred CeEEEEEeCCCCCcH-HHHHHHHHHhCCCCceEEEECCCC-CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHH
Confidence 466666555444332 2334333355655 433321111 112235434333 44567899999999999999888888
Q ss_pred HHHhc
Q 007392 555 EIEGI 559 (605)
Q Consensus 555 ~L~~~ 559 (605)
.+...
T Consensus 147 lv~~~ 151 (373)
T TIGR03472 147 VVAPL 151 (373)
T ss_pred HHHHh
Confidence 77665
No 48
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=23.53 E-value=1.2e+02 Score=27.78 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHhhcccCCCceEEEeeCCceeecHHHHHHHHHhc--CCCCceEEEEe
Q 007392 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNL 570 (605)
Q Consensus 524 a~l~w~~~~~~akyVmK~DDDtFVnvd~Ll~~L~~~--~~~~~LY~G~v 570 (605)
..+..+.+.++.+||+.+|+|.++..+.+...++.. .+...+..|..
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~ 113 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDV 113 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeee
Confidence 445556666788999999999999988888876332 23455666754
No 49
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=22.51 E-value=46 Score=35.67 Aligned_cols=95 Identities=19% Similarity=0.306 Sum_probs=54.1
Q ss_pred HHHhcccCcc--CCCCeEEEEEEeeCCChhHHHHHHHHHhccCCEEEecc---cccCcchh--HHHHHH-------Hhhc
Q 007392 464 RKTWMQSSKI--KSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPF---MDRYELVV--LKTIAI-------CEFG 529 (605)
Q Consensus 464 RkTW~q~~~i--~~~~V~vrFfVG~~~~~~~n~~L~eEae~ygDIL~ldf---~DsY~NlT--lKTla~-------l~w~ 529 (605)
|.-|+....- ...+.-+.+-||......++..+++. ....||++.-+ +|.+.++. -+.+++ +-|+
T Consensus 27 r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kqtKww~a 105 (294)
T PF05212_consen 27 RPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQTKWWFA 105 (294)
T ss_pred eecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCchhhcccccceEEEEeccceEEeeh
Confidence 4456665431 22345566777776666777788877 66777777532 23333321 111110 1122
Q ss_pred cc--CC----CceEEEeeCCceeec---HHHHHHHHHhc
Q 007392 530 VQ--NV----TAAYIMKCDDDTFIR---VDAVLKEIEGI 559 (605)
Q Consensus 530 ~~--~~----~akyVmK~DDDtFVn---vd~Ll~~L~~~ 559 (605)
.+ || .++||+.-|||.-|. ++++++.+++.
T Consensus 106 krfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~ 144 (294)
T PF05212_consen 106 KRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKE 144 (294)
T ss_pred hhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHh
Confidence 22 34 799999999999886 55566655553
No 50
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=21.90 E-value=2.3e+02 Score=26.65 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=32.0
Q ss_pred CCCCCCCCCCeEEEEEEEecceEEEEECCeEEEEecCCCC
Q 007392 351 TWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTG 390 (605)
Q Consensus 351 ~~~fPF~~G~~F~ltI~ag~egfhv~VnGrh~tsF~yR~~ 390 (605)
.....+..|+=..++|.|..+.+.+.|||+.+.++.-...
T Consensus 119 ~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~~ 158 (185)
T PF06439_consen 119 SVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPSF 158 (185)
T ss_dssp SS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTSH
T ss_pred cccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCCC
Confidence 3456788999999999999999999999999998877653
No 51
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=21.69 E-value=1e+03 Score=25.69 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=43.8
Q ss_pred CeEEEEEEeeCCChhHHHHHHHHHhccC---CEEEecccccCcchhHHHH---HHHhhccc-CCCceEEEeeCCceeecH
Q 007392 477 NVVARFFVALNPRKEVNAVLKKEAAFFG---DIVILPFMDRYELVVLKTI---AICEFGVQ-NVTAAYIMKCDDDTFIRV 549 (605)
Q Consensus 477 ~V~vrFfVG~~~~~~~n~~L~eEae~yg---DIL~ldf~DsY~NlTlKTl---a~l~w~~~-~~~akyVmK~DDDtFVnv 549 (605)
+..+.++-..+.+.. .+.+++=.+.+. .+.+....+.-.+..-|.. .+++.+.. .++.+|++.+|+|+.+..
T Consensus 70 ~~eIIVVDd~StD~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 70 KLHVILVDDHSTDGT-ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred ceEEEEEeCCCCCcH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 355555554444332 222222223333 4665543332222223432 24444432 234899999999999998
Q ss_pred HHHHHHHHhc
Q 007392 550 DAVLKEIEGI 559 (605)
Q Consensus 550 d~Ll~~L~~~ 559 (605)
+.+...+...
T Consensus 149 ~~l~~lv~~~ 158 (384)
T TIGR03469 149 DNLARLVARA 158 (384)
T ss_pred hHHHHHHHHH
Confidence 8888877654
Done!