Query 007393
Match_columns 605
No_of_seqs 199 out of 969
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 00:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.6E-53 5.5E-58 408.0 15.3 155 5-161 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.5E-53 8.5E-58 405.7 12.8 157 4-162 12-168 (171)
3 2l6w_A Beta-type platelet-deri 20.3 32 0.0011 25.6 0.0 22 579-600 13-34 (39)
4 2wwb_C SEC61BETA, protein tran 12.0 92 0.0031 27.3 1.8 26 578-603 70-95 (96)
5 2knc_B Integrin beta-3; transm 11.1 1.5E+02 0.0052 24.7 2.8 26 577-602 11-36 (79)
6 2knc_A Integrin alpha-IIB; tra 10.7 1.9E+02 0.0066 22.7 3.1 26 575-600 11-36 (54)
7 2l8s_A Integrin alpha-1; trans 10.0 2.3E+02 0.008 22.3 3.3 26 575-600 8-33 (54)
8 1ldd_A APC2WHB, anaphase promo 9.2 1.4E+02 0.0049 24.7 1.9 26 10-36 37-63 (74)
9 2kog_A Vesicle-associated memb 9.1 1.7E+02 0.0058 26.1 2.5 10 572-581 88-97 (119)
10 2ww9_C Protein transport prote 9.0 1.6E+02 0.0054 25.4 2.2 26 577-602 60-85 (87)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.6e-53 Score=408.04 Aligned_cols=155 Identities=48% Similarity=0.948 Sum_probs=134.6
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHHCCCCCCCCCeeeccCCCCCCCCCCcccccccCCceEEEeeccCCCCCCCCCcc
Q 007393 5 SLNSLPLGFRFRPTDEELVDFYLRMKINGHNDEVSVISEIDVCKREPWDLPDLSVIKTKDREWFFFCPQDRKYPNGHRLN 84 (605)
Q Consensus 5 sm~~LPpGFRF~PTDEELI~~YLr~KI~G~plp~~~I~evDVY~~ePWdLP~~~~~k~~e~eWYFFspr~rKypnG~R~n 84 (605)
+...|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+. .++.+|||||++++||++|.|++
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSC
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCce
Confidence 3468999999999999999999999999999999999999999999999999763 45789999999999999999999
Q ss_pred cccccceeeecCCceeeccCceeeeeEEEEEEeeCcCCCCCCcCeEEEEEEeCCCCCCC--C---CCCCCceEEEEEEee
Q 007393 85 RATAAGYWKATGKDRKIKSGNHLIGMKKTLVFHMGRAPKGKRTNWVMHEYRATTDDLDG--T---KPGQSAFVLCRLFKK 159 (605)
Q Consensus 85 Ratg~GyWKatGkdk~I~sgg~lIG~KKtLvFy~Grapkg~KT~WvMhEYrL~~~~l~~--~---~~~~~d~VLCRIykK 159 (605)
|+|++||||+||++++|.+++.+||+||+|+||.|++|++.||+|+||||+|....... . ....++|||||||+|
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 99999999999999999988899999999999999999999999999999998764321 1 123579999999998
Q ss_pred CC
Q 007393 160 QD 161 (605)
Q Consensus 160 ~~ 161 (605)
++
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.5e-53 Score=405.67 Aligned_cols=157 Identities=49% Similarity=0.914 Sum_probs=131.7
Q ss_pred cCCCCCCCCceeCCChHHHHHHHHHHHHCCCCCCCCCeeeccCCCCCCCCCCcccccccCCceEEEeeccCCCCCCCCCc
Q 007393 4 LSLNSLPLGFRFRPTDEELVDFYLRMKINGHNDEVSVISEIDVCKREPWDLPDLSVIKTKDREWFFFCPQDRKYPNGHRL 83 (605)
Q Consensus 4 lsm~~LPpGFRF~PTDEELI~~YLr~KI~G~plp~~~I~evDVY~~ePWdLP~~~~~k~~e~eWYFFspr~rKypnG~R~ 83 (605)
.+...|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+ ..++.+|||||++++||++|.|+
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~--~~g~~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------C
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchh--hcCCccEEEEeccccccCCCCcc
Confidence 3446899999999999999999999999999999999999999999999999975 34678999999999999999999
Q ss_pred ccccccceeeecCCceeeccCceeeeeEEEEEEeeCcCCCCCCcCeEEEEEEeCCCCCCCCCCCCCceEEEEEEeeCCC
Q 007393 84 NRATAAGYWKATGKDRKIKSGNHLIGMKKTLVFHMGRAPKGKRTNWVMHEYRATTDDLDGTKPGQSAFVLCRLFKKQDE 162 (605)
Q Consensus 84 nRatg~GyWKatGkdk~I~sgg~lIG~KKtLvFy~Grapkg~KT~WvMhEYrL~~~~l~~~~~~~~d~VLCRIykK~~~ 162 (605)
+|+|++||||+||++++|..++.+||+||+|+||+|++|++.||+|+||||+|............++|||||||+|+..
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999999888999999999999999999999999999999987532111234679999999998763
No 3
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=20.28 E-value=32 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 007393 579 AVLFRAAAVVVMFAILVSTWRC 600 (605)
Q Consensus 579 ~~~~~~~~v~vl~~vl~~~Wr~ 600 (605)
++++.++.+++.++||+-+|+.
T Consensus 13 avlal~vi~iisLIiLi~~w~q 34 (39)
T 2l6w_A 13 AILALVVLTIISLIILIMLWQK 34 (39)
Confidence 4555566677778889999974
No 4
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=12.00 E-value=92 Score=27.28 Aligned_cols=26 Identities=4% Similarity=0.125 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhheec
Q 007393 578 FAVLFRAAAVVVMFAILVSTWRCLCL 603 (605)
Q Consensus 578 ~~~~~~~~~v~vl~~vl~~~Wr~l~~ 603 (605)
++++++..++...++|+..||.+|..
T Consensus 70 P~~VLv~sl~Fi~~Vi~Lhi~~K~~r 95 (96)
T 2wwb_C 70 PVPVLVMSLLFIASVFMLHIWGKYTR 95 (96)
T ss_dssp SCSHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEehhhHHHHHHHHHHHHHhhhhcc
Confidence 34666777777788889999998753
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.05 E-value=1.5e+02 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhee
Q 007393 577 SFAVLFRAAAVVVMFAILVSTWRCLC 602 (605)
Q Consensus 577 ~~~~~~~~~~v~vl~~vl~~~Wr~l~ 602 (605)
|..++-+++.|+.+.+++.-+|+.+.
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43444555555666667778888653
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.74 E-value=1.9e+02 Score=22.73 Aligned_cols=26 Identities=4% Similarity=0.287 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhh
Q 007393 575 NRSFAVLFRAAAVVVMFAILVSTWRC 600 (605)
Q Consensus 575 ~~~~~~~~~~~~v~vl~~vl~~~Wr~ 600 (605)
.+|...+-+++-+++|.++....|.|
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34644444455566666777788976
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.01 E-value=2.3e+02 Score=22.33 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhh
Q 007393 575 NRSFAVLFRAAAVVVMFAILVSTWRC 600 (605)
Q Consensus 575 ~~~~~~~~~~~~v~vl~~vl~~~Wr~ 600 (605)
.+|...+-+++-+++|.++....|.|
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34644444455566666777788976
No 8
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=9.16 E-value=1.4e+02 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCCceeCC-ChHHHHHHHHHHHHCCCCC
Q 007393 10 PLGFRFRP-TDEELVDFYLRMKINGHND 36 (605)
Q Consensus 10 PpGFRF~P-TDEELI~~YLr~KI~G~pl 36 (605)
|.|+.|.. |++||-. ||-.|+....+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 67999998 9999987 69999987644
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=9.11 E-value=1.7e+02 Score=26.08 Aligned_cols=10 Identities=0% Similarity=-0.350 Sum_probs=4.9
Q ss_pred CCCcchhHHH
Q 007393 572 GHSNRSFAVL 581 (605)
Q Consensus 572 ~~s~~~~~~~ 581 (605)
..-+||-++-
T Consensus 88 ~rkmwwkn~K 97 (119)
T 2kog_A 88 KRKYWWKNLK 97 (119)
T ss_dssp HHHHSCHHHH
T ss_pred HHHHHHHHHH
Confidence 4445665443
No 10
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=9.05 E-value=1.6e+02 Score=25.38 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhee
Q 007393 577 SFAVLFRAAAVVVMFAILVSTWRCLC 602 (605)
Q Consensus 577 ~~~~~~~~~~v~vl~~vl~~~Wr~l~ 602 (605)
.++++++.+++...++|+..||.+|.
T Consensus 60 ~P~~VLv~sl~FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 60 DSLVVLFLSVGFIFSVIALHLLTKFT 85 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHC-------
T ss_pred cCeeehhhHHHHHHHHHHHHHhhhhc
Confidence 45667777777777888899998874
Done!