Query 007394
Match_columns 605
No_of_seqs 332 out of 2393
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 1E-102 2E-107 806.6 34.5 578 1-603 183-761 (762)
2 PRK01862 putative voltage-gate 100.0 2.2E-71 4.7E-76 618.4 46.9 456 2-590 113-572 (574)
3 KOG0475 Cl- channel CLC-3 and 100.0 4.7E-71 1E-75 574.0 25.8 492 2-588 176-694 (696)
4 KOG0476 Cl- channel CLC-2 and 100.0 2.1E-66 4.6E-71 546.0 18.2 534 2-590 186-859 (931)
5 cd03684 ClC_3_like ClC-3-like 100.0 2.3E-58 5E-63 495.4 31.4 347 2-400 74-445 (445)
6 cd03685 ClC_6_like ClC-6-like 100.0 1.9E-57 4.1E-62 490.5 31.1 336 2-403 124-462 (466)
7 PRK01610 putative voltage-gate 100.0 1.9E-53 4.2E-58 453.2 34.0 319 2-395 95-417 (418)
8 cd03683 ClC_1_like ClC-1-like 100.0 3.7E-54 8.1E-59 460.8 28.2 321 2-402 91-426 (426)
9 cd01036 ClC_euk Chloride chann 100.0 8.2E-54 1.8E-58 457.2 27.4 321 2-389 83-416 (416)
10 PF00654 Voltage_CLC: Voltage 100.0 7.3E-53 1.6E-57 442.3 30.2 312 2-381 36-354 (355)
11 cd01033 ClC_like Putative ClC 100.0 2.4E-51 5.2E-56 434.4 32.8 305 2-383 80-386 (388)
12 cd01031 EriC ClC chloride chan 100.0 3E-51 6.5E-56 437.4 33.5 318 2-393 81-402 (402)
13 COG0038 EriC Chloride channel 100.0 1.1E-50 2.4E-55 434.1 34.6 325 2-401 108-437 (443)
14 cd01034 EriC_like ClC chloride 100.0 5.5E-51 1.2E-55 433.0 31.5 314 2-389 75-390 (390)
15 PRK05277 chloride channel prot 100.0 2.5E-50 5.4E-55 434.4 35.5 322 4-395 90-417 (438)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.2E-46 2.7E-51 400.2 31.7 301 2-377 80-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 9.5E-46 2.1E-50 391.1 31.6 305 2-389 73-378 (378)
18 PRK03655 putative ion channel 100.0 3.6E-43 7.8E-48 372.3 31.8 295 2-380 95-397 (414)
19 COG3448 CBS-domain-containing 99.7 7.3E-17 1.6E-21 155.3 17.8 135 408-593 242-376 (382)
20 PRK01862 putative voltage-gate 99.7 1.1E-16 2.5E-21 179.0 22.1 185 154-383 24-219 (574)
21 COG2524 Predicted transcriptio 99.7 2E-16 4.2E-21 150.0 11.4 123 408-589 169-291 (294)
22 PRK11543 gutQ D-arabinose 5-ph 99.6 1.7E-15 3.6E-20 157.8 13.3 147 384-587 164-318 (321)
23 PRK10892 D-arabinose 5-phospha 99.6 2.8E-15 6E-20 156.4 13.5 150 384-588 169-324 (326)
24 cd00400 Voltage_gated_ClC CLC 99.6 1.1E-14 2.4E-19 155.2 16.8 176 162-383 1-186 (383)
25 COG4109 Predicted transcriptio 99.6 3E-15 6.5E-20 147.7 7.6 206 305-590 95-307 (432)
26 cd01031 EriC ClC chloride chan 99.6 2.5E-14 5.5E-19 153.2 15.4 177 161-383 1-187 (402)
27 PRK05277 chloride channel prot 99.6 7.3E-14 1.6E-18 151.1 18.5 183 156-383 2-197 (438)
28 COG3620 Predicted transcriptio 99.5 3E-14 6.5E-19 125.5 10.2 123 409-590 63-185 (187)
29 TIGR03520 GldE gliding motilit 99.5 9.6E-14 2.1E-18 148.2 13.1 130 408-595 188-317 (408)
30 cd04641 CBS_pair_28 The CBS do 99.5 3.2E-13 7E-18 119.2 12.9 118 422-586 2-119 (120)
31 PRK01610 putative voltage-gate 99.5 8E-13 1.7E-17 141.6 18.0 185 153-383 3-200 (418)
32 cd04603 CBS_pair_KefB_assoc Th 99.5 2.7E-13 5.9E-18 118.0 11.8 109 422-586 2-110 (111)
33 PRK15094 magnesium/cobalt effl 99.5 2.2E-13 4.7E-18 138.9 12.5 132 408-595 64-195 (292)
34 cd04619 CBS_pair_6 The CBS dom 99.5 3.4E-13 7.3E-18 117.9 11.9 112 422-586 2-113 (114)
35 PRK07807 inosine 5-monophospha 99.5 1.4E-13 3.1E-18 148.4 11.2 144 386-591 59-207 (479)
36 cd04618 CBS_pair_5 The CBS dom 99.4 6.6E-13 1.4E-17 113.0 10.7 95 422-586 2-97 (98)
37 cd04617 CBS_pair_4 The CBS dom 99.4 1.1E-12 2.4E-17 115.4 11.3 111 422-586 2-117 (118)
38 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.3E-12 2.8E-17 114.3 11.6 114 422-587 2-115 (115)
39 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.3E-12 2.8E-17 115.7 11.4 122 422-587 3-124 (124)
40 PRK07107 inosine 5-monophospha 99.4 5.6E-13 1.2E-17 144.6 10.1 150 384-588 64-219 (502)
41 cd03682 ClC_sycA_like ClC sycA 99.4 5.4E-12 1.2E-16 133.9 17.4 175 158-383 2-180 (378)
42 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.4E-12 3E-17 112.7 10.4 105 422-586 3-107 (108)
43 cd04605 CBS_pair_MET2_assoc Th 99.4 3.1E-12 6.8E-17 110.7 12.5 107 422-586 3-109 (110)
44 cd04639 CBS_pair_26 The CBS do 99.4 2.1E-12 4.5E-17 112.0 11.4 109 422-586 2-110 (111)
45 cd04608 CBS_pair_PALP_assoc Th 99.4 7.2E-13 1.6E-17 117.9 8.4 112 422-587 3-123 (124)
46 cd04630 CBS_pair_17 The CBS do 99.4 2.8E-12 6.1E-17 111.9 11.7 112 422-586 2-113 (114)
47 TIGR01137 cysta_beta cystathio 99.4 2.1E-12 4.5E-17 141.1 12.7 150 380-588 303-453 (454)
48 cd04614 CBS_pair_1 The CBS dom 99.4 3.1E-12 6.7E-17 108.4 10.9 94 422-586 2-95 (96)
49 cd04607 CBS_pair_NTP_transfera 99.4 3.8E-12 8.2E-17 110.9 11.7 110 422-586 3-112 (113)
50 cd04623 CBS_pair_10 The CBS do 99.4 5.2E-12 1.1E-16 109.6 11.8 111 422-586 2-112 (113)
51 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 4.9E-12 1.1E-16 108.6 11.5 104 422-586 2-105 (106)
52 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 6.2E-12 1.4E-16 108.4 12.0 106 422-586 3-108 (109)
53 cd04629 CBS_pair_16 The CBS do 99.4 3.4E-12 7.4E-17 111.1 10.4 112 422-586 2-113 (114)
54 cd04624 CBS_pair_11 The CBS do 99.4 6.2E-12 1.3E-16 109.2 12.0 110 422-586 2-111 (112)
55 cd04627 CBS_pair_14 The CBS do 99.4 7.9E-12 1.7E-16 110.7 12.9 120 422-585 2-121 (123)
56 cd04801 CBS_pair_M50_like This 99.4 4.2E-12 9.1E-17 110.8 10.9 109 422-586 2-113 (114)
57 cd04642 CBS_pair_29 The CBS do 99.4 6.6E-12 1.4E-16 111.8 12.4 124 422-586 2-125 (126)
58 cd04615 CBS_pair_2 The CBS dom 99.4 5.8E-12 1.3E-16 109.6 11.6 111 422-586 2-112 (113)
59 cd04803 CBS_pair_15 The CBS do 99.4 5.4E-12 1.2E-16 111.4 11.4 120 422-586 2-121 (122)
60 cd04586 CBS_pair_BON_assoc Thi 99.4 3.7E-12 8E-17 114.9 10.2 132 422-586 3-134 (135)
61 cd04626 CBS_pair_13 The CBS do 99.3 6.5E-12 1.4E-16 108.9 11.1 109 422-586 2-110 (111)
62 cd03685 ClC_6_like ClC-6-like 99.3 7.4E-12 1.6E-16 136.0 13.9 187 151-381 29-241 (466)
63 cd04621 CBS_pair_8 The CBS dom 99.3 6.9E-12 1.5E-16 113.4 11.5 133 422-586 2-134 (135)
64 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 7.7E-12 1.7E-16 108.8 11.0 111 422-586 3-113 (114)
65 cd01033 ClC_like Putative ClC 99.3 2.1E-11 4.4E-16 129.8 16.4 174 162-383 1-186 (388)
66 cd04643 CBS_pair_30 The CBS do 99.3 8.3E-12 1.8E-16 109.0 11.1 115 422-587 2-116 (116)
67 TIGR00400 mgtE Mg2+ transporte 99.3 4.3E-12 9.3E-17 137.6 11.1 126 408-595 128-258 (449)
68 cd04620 CBS_pair_7 The CBS dom 99.3 1E-11 2.2E-16 108.5 11.4 110 422-586 2-114 (115)
69 cd04635 CBS_pair_22 The CBS do 99.3 7.3E-12 1.6E-16 110.5 10.6 120 422-586 2-121 (122)
70 PRK11573 hypothetical protein; 99.3 1.5E-11 3.3E-16 131.3 14.6 134 408-595 184-317 (413)
71 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 5.4E-12 1.2E-16 136.1 11.2 121 408-591 85-205 (475)
72 cd04632 CBS_pair_19 The CBS do 99.3 1.3E-11 2.8E-16 110.1 11.9 126 422-586 2-127 (128)
73 cd04636 CBS_pair_23 The CBS do 99.3 9.9E-12 2.1E-16 111.6 11.1 130 422-586 2-131 (132)
74 PLN02274 inosine-5'-monophosph 99.3 1E-11 2.2E-16 135.2 12.9 116 417-590 106-223 (505)
75 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-11 2.8E-16 107.2 11.2 112 422-586 2-113 (114)
76 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.7E-11 3.8E-16 106.1 11.8 107 422-586 3-109 (110)
77 cd04602 CBS_pair_IMPDH_2 This 99.3 1.3E-11 2.9E-16 107.7 11.1 109 422-586 3-113 (114)
78 cd04588 CBS_pair_CAP-ED_DUF294 99.3 2.1E-11 4.6E-16 105.4 12.1 108 422-586 2-109 (110)
79 cd04625 CBS_pair_12 The CBS do 99.3 2.1E-11 4.5E-16 105.8 11.9 110 422-586 2-111 (112)
80 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1.6E-11 3.5E-16 106.6 11.2 111 422-586 2-112 (113)
81 cd04631 CBS_pair_18 The CBS do 99.3 1.9E-11 4.2E-16 108.3 11.7 124 422-587 2-125 (125)
82 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.9E-11 4.1E-16 105.9 11.4 109 422-586 2-110 (111)
83 cd04622 CBS_pair_9 The CBS dom 99.3 2.5E-11 5.3E-16 105.5 12.0 111 422-586 2-112 (113)
84 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.1E-11 4.6E-16 105.0 11.3 99 422-586 3-104 (105)
85 cd04640 CBS_pair_27 The CBS do 99.3 1.5E-11 3.2E-16 109.6 10.6 117 422-586 2-125 (126)
86 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 3.2E-11 7E-16 104.3 11.9 109 422-586 2-110 (111)
87 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 3.5E-11 7.6E-16 104.1 11.8 109 422-586 2-110 (111)
88 PRK14869 putative manganese-de 99.3 1.2E-11 2.5E-16 138.1 11.0 161 411-589 68-304 (546)
89 PTZ00314 inosine-5'-monophosph 99.3 1.5E-11 3.2E-16 133.8 11.4 120 412-589 97-218 (495)
90 cd04589 CBS_pair_CAP-ED_DUF294 99.3 3.6E-11 7.8E-16 104.2 11.6 109 422-586 2-110 (111)
91 TIGR01302 IMP_dehydrog inosine 99.3 1.9E-11 4.1E-16 132.3 11.9 121 411-589 80-201 (450)
92 cd04637 CBS_pair_24 The CBS do 99.3 3.6E-11 7.7E-16 106.2 11.7 121 422-587 2-122 (122)
93 cd04585 CBS_pair_ACT_assoc2 Th 99.3 3.8E-11 8.3E-16 105.5 11.9 120 422-586 2-121 (122)
94 COG0517 FOG: CBS domain [Gener 99.3 4.6E-11 9.9E-16 104.4 12.1 113 415-585 3-117 (117)
95 cd04590 CBS_pair_CorC_HlyC_ass 99.3 4.8E-11 1E-15 103.4 12.1 109 422-586 2-110 (111)
96 TIGR00393 kpsF KpsF/GutQ famil 99.3 1.4E-11 3.1E-16 124.9 10.1 114 410-580 154-268 (268)
97 cd04601 CBS_pair_IMPDH This cd 99.3 2.2E-11 4.7E-16 105.2 9.8 106 422-586 3-109 (110)
98 cd04802 CBS_pair_3 The CBS dom 99.3 4.6E-11 1E-15 103.7 11.9 110 422-586 2-111 (112)
99 PRK03655 putative ion channel 99.3 2.3E-10 4.9E-15 122.1 19.2 180 152-383 10-203 (414)
100 PRK05567 inosine 5'-monophosph 99.3 2.9E-11 6.3E-16 132.2 12.6 117 412-589 88-205 (486)
101 cd04599 CBS_pair_GGDEF_assoc2 99.3 3.3E-11 7.2E-16 103.2 10.4 103 422-586 2-104 (105)
102 COG2905 Predicted signal-trans 99.3 1.4E-11 3.1E-16 129.4 9.4 126 408-590 146-271 (610)
103 cd04594 CBS_pair_EriC_assoc_ar 99.3 5E-11 1.1E-15 102.3 11.0 100 424-586 4-103 (104)
104 cd04606 CBS_pair_Mg_transporte 99.3 2.4E-11 5.1E-16 105.1 9.0 102 426-587 2-108 (109)
105 cd03683 ClC_1_like ClC-1-like 99.2 5.3E-11 1.2E-15 128.1 13.0 183 156-382 3-202 (426)
106 cd04610 CBS_pair_ParBc_assoc T 99.2 5.1E-11 1.1E-15 102.4 10.4 104 422-586 3-106 (107)
107 COG0038 EriC Chloride channel 99.2 2.8E-10 6.2E-15 122.7 18.3 99 285-384 114-216 (443)
108 COG1253 TlyC Hemolysins and re 99.2 8.5E-11 1.8E-15 126.7 14.2 133 408-596 203-335 (429)
109 cd04609 CBS_pair_PALP_assoc2 T 99.2 6.9E-11 1.5E-15 101.9 10.9 109 422-587 2-110 (110)
110 cd02205 CBS_pair The CBS domai 99.2 1E-10 2.3E-15 100.5 11.9 111 422-586 2-112 (113)
111 cd01036 ClC_euk Chloride chann 99.2 6.2E-11 1.3E-15 127.3 12.6 100 284-383 88-202 (416)
112 cd03684 ClC_3_like ClC-3-like 99.2 1.8E-10 3.9E-15 124.6 15.3 176 162-383 1-183 (445)
113 cd04584 CBS_pair_ACT_assoc Thi 99.2 1E-10 2.2E-15 103.0 11.0 119 422-586 2-120 (121)
114 cd04633 CBS_pair_20 The CBS do 99.2 1E-10 2.3E-15 102.9 10.7 119 422-586 2-120 (121)
115 cd01034 EriC_like ClC chloride 99.2 3.2E-10 7E-15 120.9 15.5 100 284-383 80-182 (390)
116 cd04638 CBS_pair_25 The CBS do 99.2 1.7E-10 3.7E-15 99.1 10.8 104 422-586 2-105 (106)
117 COG4536 CorB Putative Mg2+ and 99.2 1.5E-10 3.3E-15 116.1 11.1 132 408-593 197-328 (423)
118 cd04598 CBS_pair_GGDEF_assoc T 99.2 2.6E-10 5.6E-15 100.0 10.8 113 422-586 2-118 (119)
119 cd04634 CBS_pair_21 The CBS do 99.1 3.1E-10 6.7E-15 103.6 11.5 136 422-586 2-142 (143)
120 COG2239 MgtE Mg/Co/Ni transpor 99.1 1.5E-10 3.2E-15 123.1 8.4 127 410-598 131-262 (451)
121 COG4535 CorC Putative Mg2+ and 99.0 7.4E-10 1.6E-14 104.2 6.6 133 408-596 64-196 (293)
122 cd04592 CBS_pair_EriC_assoc_eu 99.0 3.4E-09 7.3E-14 95.5 10.8 116 422-566 2-117 (133)
123 PF00571 CBS: CBS domain CBS d 98.9 2.2E-09 4.8E-14 81.3 6.4 55 530-589 2-56 (57)
124 PF00654 Voltage_CLC: Voltage 98.9 1E-08 2.2E-13 108.1 11.6 101 283-383 40-143 (355)
125 KOG2550 IMP dehydrogenase/GMP 98.7 2.5E-08 5.4E-13 101.0 8.2 111 422-588 117-227 (503)
126 KOG1764 5'-AMP-activated prote 98.7 9.6E-08 2.1E-12 100.6 12.6 127 422-594 238-364 (381)
127 PF00571 CBS: CBS domain CBS d 98.7 4.2E-08 9.2E-13 74.2 6.3 56 413-481 1-56 (57)
128 COG3448 CBS-domain-containing 98.6 3.8E-08 8.3E-13 95.8 5.7 61 525-590 243-303 (382)
129 TIGR01186 proV glycine betaine 98.6 5.4E-07 1.2E-11 94.7 12.8 108 423-590 252-359 (363)
130 PRK10070 glycine betaine trans 98.5 8.2E-07 1.8E-11 94.5 12.3 120 411-590 274-394 (400)
131 KOG0474 Cl- channel CLC-7 and 98.4 2.1E-06 4.5E-11 91.8 11.9 98 284-381 189-301 (762)
132 PRK14869 putative manganese-de 98.2 5.1E-07 1.1E-11 101.0 1.4 144 409-587 244-391 (546)
133 cd04597 CBS_pair_DRTGG_assoc2 98.1 5.2E-06 1.1E-10 72.3 5.6 55 527-586 58-112 (113)
134 COG3620 Predicted transcriptio 98.0 4.7E-06 1E-10 74.2 4.2 61 525-591 63-123 (187)
135 TIGR00400 mgtE Mg2+ transporte 98.0 5.3E-06 1.1E-10 90.2 5.0 113 411-590 195-307 (449)
136 KOG0476 Cl- channel CLC-2 and 98.0 0.00032 6.9E-09 76.9 17.7 66 527-595 588-653 (931)
137 COG2524 Predicted transcriptio 98.0 8.7E-06 1.9E-10 78.3 5.1 58 527-590 172-229 (294)
138 cd04603 CBS_pair_KefB_assoc Th 97.8 3.8E-05 8.2E-10 66.4 5.5 55 411-478 56-110 (111)
139 cd04597 CBS_pair_DRTGG_assoc2 97.8 4.2E-05 9.1E-10 66.6 5.6 54 411-477 58-111 (113)
140 cd04619 CBS_pair_6 The CBS dom 97.7 6.5E-05 1.4E-09 65.2 5.2 56 410-478 58-113 (114)
141 cd04618 CBS_pair_5 The CBS dom 97.6 8.5E-05 1.9E-09 62.8 5.4 47 537-588 3-50 (98)
142 cd04641 CBS_pair_28 The CBS do 97.6 0.00013 2.8E-09 63.9 6.6 49 536-589 2-50 (120)
143 PRK05567 inosine 5'-monophosph 97.6 0.00016 3.5E-09 79.4 8.6 118 411-587 147-265 (486)
144 smart00116 CBS Domain in cysta 97.6 0.00017 3.7E-09 51.1 5.5 47 537-588 2-48 (49)
145 cd04592 CBS_pair_EriC_assoc_eu 97.5 0.00022 4.7E-09 64.1 6.9 50 536-590 2-51 (133)
146 cd04614 CBS_pair_1 The CBS dom 97.5 0.00027 5.9E-09 59.4 6.3 47 536-587 2-48 (96)
147 PRK10892 D-arabinose 5-phospha 97.4 0.00017 3.8E-09 75.2 5.8 60 525-589 200-261 (326)
148 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.00018 4E-09 63.0 5.0 57 409-478 67-123 (124)
149 cd04608 CBS_pair_PALP_assoc Th 97.4 0.00046 1E-08 61.0 7.4 51 535-590 2-52 (124)
150 cd04607 CBS_pair_NTP_transfera 97.4 0.00024 5.2E-09 61.3 5.5 54 411-477 58-111 (113)
151 PRK11543 gutQ D-arabinose 5-ph 97.4 0.00021 4.6E-09 74.4 5.7 59 526-589 196-256 (321)
152 cd04620 CBS_pair_7 The CBS dom 97.4 0.00027 5.8E-09 61.1 5.4 56 410-478 57-114 (115)
153 cd04606 CBS_pair_Mg_transporte 97.3 0.0003 6.6E-09 60.3 5.2 57 410-479 52-108 (109)
154 cd04585 CBS_pair_ACT_assoc2 Th 97.3 0.00035 7.6E-09 60.8 5.6 57 409-478 65-121 (122)
155 cd04596 CBS_pair_DRTGG_assoc T 97.3 0.00035 7.6E-09 59.8 5.4 56 410-478 52-107 (108)
156 cd04605 CBS_pair_MET2_assoc Th 97.3 0.0006 1.3E-08 58.3 6.9 50 535-589 2-51 (110)
157 cd04627 CBS_pair_14 The CBS do 97.3 0.00039 8.4E-09 61.1 5.7 52 413-477 70-121 (123)
158 cd04615 CBS_pair_2 The CBS dom 97.3 0.00043 9.2E-09 59.6 5.7 56 409-477 56-111 (113)
159 KOG1764 5'-AMP-activated prote 97.3 0.0017 3.7E-08 68.7 11.0 131 422-596 163-293 (381)
160 cd04625 CBS_pair_12 The CBS do 97.3 0.00045 9.7E-09 59.3 5.5 54 411-478 58-111 (112)
161 PRK07107 inosine 5-monophospha 97.3 0.00044 9.6E-09 75.7 6.5 59 410-479 160-218 (502)
162 cd04624 CBS_pair_11 The CBS do 97.3 0.00092 2E-08 57.4 7.3 50 536-590 2-51 (112)
163 cd04630 CBS_pair_17 The CBS do 97.3 0.00042 9E-09 59.9 5.1 55 410-478 59-113 (114)
164 cd04582 CBS_pair_ABC_OpuCA_ass 97.2 0.00077 1.7E-08 57.2 6.5 48 536-588 2-49 (106)
165 cd04604 CBS_pair_KpsF_GutQ_ass 97.2 0.00053 1.2E-08 59.0 5.5 55 411-478 59-113 (114)
166 cd04803 CBS_pair_15 The CBS do 97.2 0.00048 1E-08 60.2 5.3 57 409-478 65-121 (122)
167 cd04610 CBS_pair_ParBc_assoc T 97.2 0.00054 1.2E-08 58.3 5.5 55 411-478 52-106 (107)
168 TIGR01137 cysta_beta cystathio 97.2 0.0005 1.1E-08 75.3 6.5 59 526-589 334-392 (454)
169 cd04587 CBS_pair_CAP-ED_DUF294 97.2 0.0005 1.1E-08 59.1 5.2 54 411-477 58-111 (113)
170 cd04617 CBS_pair_4 The CBS dom 97.2 0.00093 2E-08 58.2 6.9 49 536-589 2-50 (118)
171 TIGR00393 kpsF KpsF/GutQ famil 97.2 0.00047 1E-08 69.8 5.5 58 526-588 154-212 (268)
172 TIGR03520 GldE gliding motilit 97.2 0.00079 1.7E-08 72.3 7.4 59 527-589 191-251 (408)
173 smart00116 CBS Domain in cysta 97.2 0.001 2.2E-08 47.0 5.7 46 423-479 2-47 (49)
174 cd04623 CBS_pair_10 The CBS do 97.2 0.001 2.2E-08 57.0 6.8 50 536-590 2-51 (113)
175 cd04613 CBS_pair_SpoIVFB_EriC_ 97.2 0.00091 2E-08 57.4 6.5 49 536-589 2-50 (114)
176 TIGR01303 IMP_DH_rel_1 IMP deh 97.2 0.0018 3.9E-08 70.5 10.0 59 411-482 146-204 (475)
177 cd04602 CBS_pair_IMPDH_2 This 97.2 0.00069 1.5E-08 58.6 5.6 55 411-478 57-113 (114)
178 cd04621 CBS_pair_8 The CBS dom 97.2 0.00073 1.6E-08 60.7 5.9 56 409-478 79-134 (135)
179 cd04639 CBS_pair_26 The CBS do 97.2 0.00059 1.3E-08 58.5 5.1 55 411-478 56-110 (111)
180 cd04635 CBS_pair_22 The CBS do 97.2 0.00055 1.2E-08 59.8 4.9 57 409-478 65-121 (122)
181 cd04643 CBS_pair_30 The CBS do 97.2 0.00097 2.1E-08 57.6 6.4 49 536-589 2-50 (116)
182 cd04631 CBS_pair_18 The CBS do 97.2 0.00057 1.2E-08 60.0 5.0 56 410-478 69-124 (125)
183 cd04593 CBS_pair_EriC_assoc_ba 97.2 0.0011 2.4E-08 57.2 6.8 49 536-589 2-50 (115)
184 PRK07807 inosine 5-monophospha 97.2 0.00077 1.7E-08 73.4 6.9 56 526-586 88-143 (479)
185 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.00071 1.5E-08 57.6 5.4 54 411-477 54-107 (109)
186 cd04611 CBS_pair_PAS_GGDEF_DUF 97.2 0.00074 1.6E-08 57.7 5.5 56 410-478 55-110 (111)
187 cd04595 CBS_pair_DHH_polyA_Pol 97.1 0.00076 1.6E-08 57.8 5.6 55 410-478 55-109 (110)
188 cd04601 CBS_pair_IMPDH This cd 97.1 0.00073 1.6E-08 57.7 5.3 56 410-478 53-109 (110)
189 cd04586 CBS_pair_BON_assoc Thi 97.1 0.00057 1.2E-08 61.1 4.8 55 410-478 80-134 (135)
190 cd04632 CBS_pair_19 The CBS do 97.1 0.0013 2.7E-08 58.2 6.9 48 536-588 2-49 (128)
191 PRK15094 magnesium/cobalt effl 97.1 0.0011 2.4E-08 67.8 7.2 57 527-588 67-126 (292)
192 cd04801 CBS_pair_M50_like This 97.1 0.0012 2.6E-08 57.0 6.4 49 536-589 2-51 (114)
193 cd04622 CBS_pair_9 The CBS dom 97.1 0.00067 1.5E-08 58.3 4.8 55 411-478 58-112 (113)
194 cd04802 CBS_pair_3 The CBS dom 97.1 0.0009 2E-08 57.4 5.5 54 410-477 57-110 (112)
195 cd04588 CBS_pair_CAP-ED_DUF294 97.1 0.0009 1.9E-08 57.2 5.4 54 411-477 55-108 (110)
196 cd04629 CBS_pair_16 The CBS do 97.0 0.0011 2.4E-08 57.0 5.7 50 536-590 2-51 (114)
197 cd04642 CBS_pair_29 The CBS do 97.0 0.0011 2.4E-08 58.5 5.7 51 415-478 75-125 (126)
198 cd04589 CBS_pair_CAP-ED_DUF294 97.0 0.00098 2.1E-08 57.1 5.1 55 410-478 56-110 (111)
199 PLN02274 inosine-5'-monophosph 97.0 0.0012 2.5E-08 72.6 6.7 62 410-482 162-223 (505)
200 cd04612 CBS_pair_SpoIVFB_EriC_ 97.0 0.0013 2.8E-08 56.3 5.7 55 411-478 56-110 (111)
201 COG0517 FOG: CBS domain [Gener 97.0 0.0012 2.7E-08 56.9 5.4 52 412-476 63-116 (117)
202 cd04640 CBS_pair_27 The CBS do 97.0 0.0016 3.5E-08 57.4 6.3 46 536-586 2-47 (126)
203 cd04590 CBS_pair_CorC_HlyC_ass 97.0 0.0018 3.9E-08 55.4 6.4 50 536-590 2-52 (111)
204 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.0013 2.8E-08 56.4 5.4 55 410-478 56-110 (111)
205 cd02205 CBS_pair The CBS domai 97.0 0.0024 5.2E-08 54.1 7.1 51 536-591 2-52 (113)
206 cd04636 CBS_pair_23 The CBS do 97.0 0.0013 2.8E-08 58.5 5.6 50 536-590 2-51 (132)
207 cd04637 CBS_pair_24 The CBS do 97.0 0.0011 2.4E-08 57.9 4.9 55 411-478 67-121 (122)
208 COG2905 Predicted signal-trans 96.9 0.0011 2.3E-08 71.1 5.4 62 527-593 149-210 (610)
209 cd04626 CBS_pair_13 The CBS do 96.9 0.0021 4.6E-08 55.0 6.5 49 536-589 2-50 (111)
210 TIGR01302 IMP_dehydrog inosine 96.9 0.0016 3.4E-08 70.9 6.9 55 527-586 80-137 (450)
211 cd04633 CBS_pair_20 The CBS do 96.9 0.0013 2.8E-08 57.3 5.1 56 409-478 65-120 (121)
212 cd04599 CBS_pair_GGDEF_assoc2 96.9 0.0015 3.4E-08 55.1 5.3 53 411-477 51-103 (105)
213 cd04594 CBS_pair_EriC_assoc_ar 96.9 0.0015 3.3E-08 55.4 5.2 53 412-478 51-103 (104)
214 COG4175 ProV ABC-type proline/ 96.9 0.0017 3.7E-08 65.2 5.9 114 408-590 271-384 (386)
215 KOG0475 Cl- channel CLC-3 and 96.9 0.0013 2.7E-08 71.2 5.2 101 283-383 180-285 (696)
216 cd04584 CBS_pair_ACT_assoc Thi 96.8 0.0024 5.3E-08 55.5 5.9 48 536-588 2-49 (121)
217 cd04609 CBS_pair_PALP_assoc2 T 96.8 0.0029 6.2E-08 53.9 6.0 49 536-590 2-50 (110)
218 cd04591 CBS_pair_EriC_assoc_eu 96.8 0.0021 4.6E-08 54.8 4.9 49 416-478 56-104 (105)
219 COG4109 Predicted transcriptio 96.7 0.0031 6.8E-08 63.7 6.1 62 408-482 246-307 (432)
220 TIGR03415 ABC_choXWV_ATP choli 96.6 0.0055 1.2E-07 65.0 8.0 50 533-589 331-380 (382)
221 cd04634 CBS_pair_21 The CBS do 96.6 0.0039 8.4E-08 56.5 5.8 49 536-590 2-50 (143)
222 cd04598 CBS_pair_GGDEF_assoc T 96.6 0.0044 9.5E-08 53.7 5.6 55 410-477 60-117 (119)
223 PTZ00314 inosine-5'-monophosph 96.5 0.0035 7.7E-08 68.8 6.0 57 528-586 97-153 (495)
224 cd04638 CBS_pair_25 The CBS do 96.3 0.0073 1.6E-07 51.2 5.2 53 412-478 53-105 (106)
225 COG2239 MgtE Mg/Co/Ni transpor 96.1 0.0068 1.5E-07 65.2 5.0 60 410-482 195-254 (451)
226 TIGR01186 proV glycine betaine 95.6 0.023 5E-07 60.0 6.3 57 412-482 303-359 (363)
227 PRK11573 hypothetical protein; 95.4 0.03 6.5E-07 60.3 6.5 58 527-588 187-246 (413)
228 COG1253 TlyC Hemolysins and re 94.9 0.043 9.4E-07 59.5 6.1 61 527-591 206-268 (429)
229 COG4535 CorC Putative Mg2+ and 94.5 0.045 9.8E-07 52.6 4.2 61 527-591 67-129 (293)
230 PRK10070 glycine betaine trans 94.3 0.081 1.8E-06 56.6 6.3 57 412-482 338-394 (400)
231 KOG2550 IMP dehydrogenase/GMP 93.2 0.095 2.1E-06 54.3 4.1 57 410-479 170-226 (503)
232 KOG2118 Predicted membrane pro 92.8 0.14 3.1E-06 56.2 5.1 135 406-595 199-334 (498)
233 COG1125 OpuBA ABC-type proline 90.3 1.5 3.3E-05 43.3 8.5 43 540-587 266-308 (309)
234 TIGR03415 ABC_choXWV_ATP choli 85.5 1.5 3.3E-05 46.6 5.9 54 412-481 327-380 (382)
235 COG4536 CorB Putative Mg2+ and 81.2 6.3 0.00014 41.0 7.9 55 415-480 269-323 (423)
236 COG4175 ProV ABC-type proline/ 80.2 3 6.6E-05 42.5 5.2 53 416-482 332-384 (386)
237 TIGR02865 spore_II_E stage II 73.8 94 0.002 36.5 15.9 31 151-181 111-141 (764)
238 COG1125 OpuBA ABC-type proline 65.0 10 0.00022 37.7 4.7 59 409-478 247-307 (309)
239 PF01102 Glycophorin_A: Glycop 47.4 27 0.00059 30.6 3.9 16 157-172 67-82 (122)
240 PF10518 TAT_signal: TAT (twin 45.2 16 0.00036 22.5 1.6 23 64-86 3-25 (26)
241 PRK11388 DNA-binding transcrip 43.9 39 0.00084 38.8 5.7 83 385-482 14-99 (638)
242 COG2216 KdpB High-affinity K+ 42.6 17 0.00037 39.5 2.3 49 544-598 413-461 (681)
243 COG2205 KdpD Osmosensitive K+ 39.3 3.5E+02 0.0077 31.7 12.0 50 69-119 404-457 (890)
244 PRK10490 sensor protein KdpD; 38.5 2.7E+02 0.0059 33.4 11.9 39 132-173 461-499 (895)
245 TIGR03546 conserved hypothetic 33.0 2.8E+02 0.0061 25.4 8.4 29 64-93 14-42 (154)
246 COG4042 Predicted membrane pro 31.6 1.2E+02 0.0026 24.8 4.9 18 158-175 76-93 (104)
247 KOG1278 Endosomal membrane pro 27.1 2E+02 0.0043 32.0 7.2 36 268-316 423-458 (628)
248 KOG4267 Predicted membrane pro 26.8 79 0.0017 27.0 3.3 43 305-347 28-72 (110)
249 PLN03100 Permease subunit of E 26.1 7.2E+02 0.016 25.4 11.3 62 9-89 96-157 (292)
250 PF01988 VIT1: VIT family; In 25.8 3.7E+02 0.008 25.9 8.5 31 13-43 14-44 (213)
251 PRK10535 macrolide transporter 25.8 91 0.002 35.8 4.9 59 158-216 576-635 (648)
252 COG5336 Uncharacterized protei 25.1 2.4E+02 0.0053 24.1 5.9 46 108-171 48-93 (116)
253 cd02431 Ferritin_CCC1_C CCC1-r 24.5 5.4E+02 0.012 23.4 8.7 25 188-212 121-145 (149)
254 PF02990 EMP70: Endomembrane p 23.2 4.7E+02 0.01 29.2 9.7 20 153-172 301-320 (521)
255 KOG4112 Signal peptidase subun 22.1 1.1E+02 0.0023 25.4 3.1 16 308-323 32-47 (101)
256 cd02433 Nodulin-21_like_2 Nodu 21.2 5.4E+02 0.012 25.4 8.6 32 12-43 31-62 (234)
257 PF09775 Keratin_assoc: Kerati 21.2 3.5E+02 0.0075 24.0 6.3 48 73-120 3-50 (131)
258 PF07456 Hpre_diP_synt_I: Hept 20.9 6.4E+02 0.014 22.9 9.0 96 277-380 42-141 (148)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-102 Score=806.58 Aligned_cols=578 Identities=62% Similarity=1.040 Sum_probs=537.3
Q ss_pred CCccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhh
Q 007394 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAA 80 (605)
Q Consensus 1 ~l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~ 80 (605)
++++||++.|+++++.++++|+.+|||||++|.|+++|+.++|+.|.++++.|+|+|+|||++|||.++.||+|||+||+
T Consensus 183 ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAA 262 (762)
T KOG0474|consen 183 IVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAA 262 (762)
T ss_pred eeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 81 FRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 81 F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|+||+||++|++|+.+++|.....||.|+++++++++.+.++..+.+|+++.|+.+.++.|++......|+..|++++++
T Consensus 263 F~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~ 342 (762)
T KOG0474|consen 263 FRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLL 342 (762)
T ss_pred hCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeE
Confidence 99999999999999999999999999999999999999998999999999999999999999876666899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCC-CCCCCCCCCCcc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFK 239 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~-~~~~~g~~g~~~ 239 (605)
+|+++|++|++||+++.+...++.+ ..+++..+++++++++++++++.|.+|.+..|+|+|.+..+ .||+
T Consensus 343 iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~-------- 413 (762)
T KOG0474|consen 343 IGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT-------- 413 (762)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc--------
Confidence 9999999999999998887777766 45567789999999999999999999999999999976443 5553
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
|+||++.||+++++++++++++++++|+... ++|....|++|++.+++++++|+|...|.|+|.|++.+||+.||++|
T Consensus 414 -f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg 491 (762)
T KOG0474|consen 414 -FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVG 491 (762)
T ss_pred -ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHH
Confidence 7999999999999999999999999999876 89999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCCC
Q 007394 320 MAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPF 399 (605)
Q Consensus 320 ~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~~~l~~~g~~~ 399 (605)
.++..+..++|+.||++||||+++|++||++|-+||++|.| +..+++|+|++-++|.+|++.+++++||.+++.+|+|+
T Consensus 492 ~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~ 570 (762)
T KOG0474|consen 492 MLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPF 570 (762)
T ss_pred HHHHHhhccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCcc
Confidence 99988889999999999999999999999999999999999 66788899999999999999999999999999999999
Q ss_pred CCCCCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 400 LDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 400 l~~~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
++.++++.+++++++|+|++ ++++++..+.+..++++++.++|++|||||+.+. ++.+++.|+|.|+++...
T Consensus 571 Le~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~------~~~~~l~GlILRshl~vl 642 (762)
T KOG0474|consen 571 LEWEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS------NEAGRLHGLILRSHLLVL 642 (762)
T ss_pred ccCCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCC------ccchhhhHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999998621 222689999999999999
Q ss_pred HhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCc
Q 007394 480 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR 559 (605)
Q Consensus 480 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~ 559 (605)
|+++.+.++.+........+.++.+|+.++..+++|+.+++++...++|+.++|+++|+++++++++.++..+|++.++|
T Consensus 643 L~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLR 722 (762)
T KOG0474|consen 643 LKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLR 722 (762)
T ss_pred HHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcce
Confidence 99988775543333333446788999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCceEEEEeHHHhHHHHhhhhCCCcCCcccCC
Q 007394 560 HLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ 603 (605)
Q Consensus 560 ~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~~~~~~~~ 603 (605)
|+.||++ .++++|++||+|+.++...+..+...+.+.++
T Consensus 723 hLlVv~~-----~~~~~gilTR~D~~~~~~l~~~~~v~~~~~~~ 761 (762)
T KOG0474|consen 723 HLLVVPK-----TNRVVGILTRKDLARYRILGLEPHVDELKMGK 761 (762)
T ss_pred eEEEecC-----CCceeEEEehhhhhhHHHhccccccccccccc
Confidence 9999998 78899999999999888878888777666553
No 2
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.2e-71 Score=618.37 Aligned_cols=456 Identities=19% Similarity=0.287 Sum_probs=385.1
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| |+++ +++++|.+++||+|||+||+|
T Consensus 113 ~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~G~aAglaa~F 179 (574)
T PRK01862 113 VPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVACGAAAGITSAY 179 (574)
T ss_pred CChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999999998 5554 567889999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|+++++++.+.++++++++++++.+.+.+ +|+++ .|.++ ..+.++..++++++++
T Consensus 180 ~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~-~~~~~~~~~~~~~~~l 245 (574)
T PRK01862 180 NAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF-----------AGYQP--PYEMP-VFPAVTGWEVLLFVAL 245 (574)
T ss_pred CCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeeCC-CcCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999998888887753 45555 45665 3456888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++++. ++++...++|++++++.+++|++ .|.
T Consensus 246 Gv~~G~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~gl~~g~l~~~~p~~----------------~g~------- 298 (574)
T PRK01862 246 GVLCGAAAPQFLRLLDASKNQFKRLPV----PLPVRLALGGLLVGVISVWVPEV----------------WGN------- 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC----chhHHHHHHHHHHHHHHHHHHHH----------------hcC-------
Confidence 999999999999999999988876532 22334456778888888888876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+. ++++++ +...+..++.+++.|+++|++|+|+|+|||.|+|++++||++|+++|++
T Consensus 299 -----G~~~------------i~~~~~----~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~ 357 (574)
T PRK01862 299 -----GYSV------------VNTILH----APWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLA 357 (574)
T ss_pred -----CHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHH
Confidence 2332 233332 2344556677888999999999999999999999999999999999998
Q ss_pred hhccc---CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhcCC
Q 007394 322 MGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGL 397 (605)
Q Consensus 322 ~~~~~---~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~g~ 397 (605)
++... ...|..|+++||+|++++++|+|+|++++++|+|+++++++|+++++++|+.+++.+ ++++|+.++++++.
T Consensus 358 ~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~ 437 (574)
T PRK01862 358 MHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQD 437 (574)
T ss_pred HHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhccc
Confidence 86532 235678999999999999999999999999999999999999999999999999988 78999999998754
Q ss_pred CCCCCCCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 398 PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 398 ~~l~~~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.+.+.+++++++|+|++ +..+++++++++|+.+.+.+++.+.+||+|++ ++++|+++.+|+.
T Consensus 438 ----~~~~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----------g~lvGiVt~~dL~ 500 (574)
T PRK01862 438 ----EAERERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----------GRFRGAVALKDIT 500 (574)
T ss_pred ----cchhhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------CeEEEEEEHHHHH
Confidence 335567889999999998 88899999999999999999999999999987 8999999999997
Q ss_pred HHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcC
Q 007394 478 LALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVG 557 (605)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~ 557 (605)
+.+.+... ....+++|+|++++.++++|++++|++++|.+++
T Consensus 501 ~~l~~~~~--------------------------------------~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~ 542 (574)
T PRK01862 501 SDLLDKRD--------------------------------------TTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQ 542 (574)
T ss_pred HHhhcccc--------------------------------------cccchHHHhccCCCeeECCCCCHHHHHHHHHhcC
Confidence 64322110 0012467788899999999999999999999999
Q ss_pred CcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 558 LRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 558 ~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++||+|+ +++++++|+||++|+++++.+
T Consensus 543 ~~~lpVVd~---~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 543 GERLPVVES---EASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCeeeeEeC---CCCCeEEEEEEHHHHHHHHHh
Confidence 999999987 112589999999999998765
No 3
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-71 Score=573.98 Aligned_cols=492 Identities=30% Similarity=0.545 Sum_probs=397.9
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhh-ccCChhhhHHHHHHhHhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLR-YFNNDRDRRDLITCGSSSGVCAA 80 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~r~l~~~g~aagiaa~ 80 (605)
++.+|++.|.++.++++++|+|+|||||+||++.++|+.+.+ +++ +.+++..+|+++++++|||+|++
T Consensus 176 lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~-----------~f~~~~~~e~~~reilsAaaAaGvava 244 (696)
T KOG0475|consen 176 LGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSK-----------IFPKYRLNEAKKREILSAAAAAGVAVA 244 (696)
T ss_pred hhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhh-----------hhhhhccchhHHHHHHHHHhhccchhh
Confidence 567899999999999999999999999999999999999998 433 33477889999999999999999
Q ss_pred hccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 81 FRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 81 F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
||||+||++|++|++..+|+.+.+|+.|+++.+|+.+.+.+ ..|+++...+|.+. ...+|+..|+++|++
T Consensus 245 FgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i---------~pf~~~~~vLf~V~-Y~~~W~~~EL~pFi~ 314 (696)
T KOG0475|consen 245 FGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSI---------NPFGNSRLVLFYVD-YDRPWSLFELLPFIL 314 (696)
T ss_pred cCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeee---------cccCCCceEEEEEe-ccCCcccccchHHHH
Confidence 99999999999999998899999999999999998888865 57888877788876 468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|++||+.|.+|.|++.++.++++.. +...++++++.+++++|++++++.|+++.-.
T Consensus 315 LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~--------------------- 371 (696)
T KOG0475|consen 315 LGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNM--------------------- 371 (696)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhH---------------------
Confidence 99999999999999999999988765 2345789999999999999999999983100
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCC--------C-Cc-chhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTP--------T-EF-QPSSILIFFILYCILGLITFGIAVPSGLFLPIILM 310 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~--------~-~~-~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~i 310 (605)
.. .+..+|+.... . -+ ....|+...++|+++|++|+|++.|+|.|.||+.+
T Consensus 372 -------~e------------~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmai 432 (696)
T KOG0475|consen 372 -------SE------------LITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAI 432 (696)
T ss_pred -------HH------------HHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHH
Confidence 00 01111111110 0 01 13456677789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc-----------cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 007394 311 GSAYGRLLGMAMGSY-----------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTV 379 (605)
Q Consensus 311 Ga~~G~~~g~~~~~~-----------~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v 379 (605)
||++|+++|.+..+. ..+.|+.|+++||||.++|++|+|+|.+||++|+||++.+++|+|+|+.+|.++
T Consensus 433 GA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI 512 (696)
T KOG0475|consen 433 GAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWI 512 (696)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHH
Confidence 999999999665541 246799999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCcHHHHHHHhcCCCCCCCCCCccccccccccccccC---CCeeEEcCc-ccHHHHHHHHhcCCCCeeeeecCCC
Q 007394 380 GDSF-NPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK---PPVITLSGI-EKVSQIVDVLRNTTHNGFPVLDEGV 454 (605)
Q Consensus 380 ~~~l-~~~iy~~~l~~~g~~~l~~~~~~~l~~~~v~diM~~~---~~v~~v~~~-~tl~~a~~~l~~~~~~~~PVvd~~~ 454 (605)
++.+ ...+||.+++.+|+|+++.+++.. +--..++|.++ +...++..+ ++++|...+|++++++++||+-++
T Consensus 513 ~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~- 589 (696)
T KOG0475|consen 513 GDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE- 589 (696)
T ss_pred HhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc-
Confidence 9999 667999999999999997665433 33345566552 124555444 899999999999999999998664
Q ss_pred CCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc
Q 007394 455 VPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN 534 (605)
Q Consensus 455 ~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 534 (605)
++.+++|+|.++|+...+.+.....+-..+ .+. .+.++.. + ........++++++|+
T Consensus 590 --------~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~------~~~---~f~~~~~---~---~~~~~~~~~~lk~il~ 646 (696)
T KOG0475|consen 590 --------DSQRLVGFVLRRNLFLAILNARKIQSFIVT------TSI---YFNDPSP---S---AVAGIPSRLDLKDILD 646 (696)
T ss_pred --------ccceeEEEEchHHHHHHHhhhcccccccee------ccc---ccCCCCc---c---ccCCCCCCcCceeecc
Confidence 458999999999998766642211110000 000 1111100 0 0011223478999999
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 535 ~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
..|+++.+++|.+-++++|++.+++++.|.++ |++.|+||++|+++..
T Consensus 647 ~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~------G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 647 MTPFTVTDLTPMETVVDLFRKLGLRQILVTKN------GILLGIITKKDCLRHT 694 (696)
T ss_pred CCcccccccCcHHHHHHHHHhhCceEEEEccC------CeeEeeeehHHHHHhh
Confidence 99999999999999999999999999998765 9999999999999864
No 4
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-66 Score=545.98 Aligned_cols=534 Identities=27% Similarity=0.450 Sum_probs=402.6
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
|+.||+++|.++..+++|+|+++|||||+|||++.+++.++|.. .+.....|+|+.++.+++++|||.|+|+.|
T Consensus 186 Lt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~------a~~~~g~~enesR~~EmLaaaCAVGVactF 259 (931)
T KOG0476|consen 186 LTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVT------ACQFGGFFENESRNMEMLAAACAVGVACTF 259 (931)
T ss_pred hhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHH------HhhccccccCcchHHHHHHHHhhhhheeee
Confidence 78999999999999999999999999999999999999998721 223556677888899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeecc-CCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSN-VPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~-~~~~~~~~~l~~~il 160 (605)
.||+||+||++|+++++|.+++|||.||+++++|+++|.+..|+...... -...|+.++ .+.+|+++|+|+|++
T Consensus 260 sAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t-----ItA~yqT~F~~d~~F~~~ELp~Fal 334 (931)
T KOG0476|consen 260 SAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT-----ITALYQTSFRPDFPFDVQELPFFAL 334 (931)
T ss_pred cCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh-----hHHHHhccCCCCCCCCHHHhHHHHH
Confidence 99999999999999999999999999999999999999987665411000 011334443 334899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCC--C
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNL---INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGR--S 235 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~--~ 235 (605)
||++||++|++|+++.+++.-+.++ .+....+++++.+++++++++.+.|. .- .|. +
T Consensus 335 lGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssltfP--~G----------------lG~f~a 396 (931)
T KOG0476|consen 335 LGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSLTFP--PG----------------LGQFLA 396 (931)
T ss_pred HHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhheecC--Cc----------------cccccc
Confidence 9999999999999988875544321 22223456788898888888877653 11 111 1
Q ss_pred CCcccccCCCCCchhhHHHhhcCc------h-----hHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccch
Q 007394 236 GNFKQFNCPNGHYNDLATLLLTTN------D-----DAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLF 304 (605)
Q Consensus 236 g~~~~~~~~~~~y~~~~~~~~~~~------~-----~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f 304 (605)
|.+. .-+.+.+++.|-. + ..+-.-|.......-.+..|++|.+.||+++.++....+|.|.|
T Consensus 397 G~l~-------f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~F 469 (931)
T KOG0476|consen 397 GRLS-------FRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVF 469 (931)
T ss_pred cccc-------HHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccce
Confidence 1100 0011222111100 0 00111111111112234578999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhc-----------ccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHH
Q 007394 305 LPIILMGSAYGRLLGMAMGS-----------YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVL 373 (605)
Q Consensus 305 ~Psl~iGa~~G~~~g~~~~~-----------~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~ 373 (605)
+|.++|||++||++|+.+.. ...+.|+.||++|+|||-++++ .++|.+||++|+||+...++|+|+|+
T Consensus 470 mPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVT-HTvSvAVIifElTGQl~hiLPVmIAV 548 (931)
T KOG0476|consen 470 MPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVT-HTVSVAVIIFELTGQLCHILPVMIAV 548 (931)
T ss_pred eeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhcccee-eeeeEEEEEEeeccchHHHHHHHHHH
Confidence 99999999999999976543 1357899999999999866655 59999999999999999999999999
Q ss_pred HHHHHHHhhcCCcHHHHHHHhcCCCCCCCCCC--ccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeec
Q 007394 374 LIAKTVGDSFNPSIYEIILELKGLPFLDAHPE--PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD 451 (605)
Q Consensus 374 ~~a~~v~~~l~~~iy~~~l~~~g~~~l~~~~~--~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd 451 (605)
++|+.|..++..++||..++.|++||++..+. ...+++.|+|+|.+ |+..+..++|.+|+.+.+..+..+.+|+||
T Consensus 549 llaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 549 LLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred HHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceecccc
Confidence 99999999999999999999999999987643 34678899999999 999999999999999999888799999999
Q ss_pred CCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchh--------------------HHHh-------------
Q 007394 452 EGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE--------------------WEVR------------- 498 (605)
Q Consensus 452 ~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~--------------------~~~~------------- 498 (605)
+. |+..|+|.|.|++|..++.++. ..+++..+. ++..
T Consensus 627 s~---------esmiLlGSV~R~~L~~ll~~~i-g~~~r~~~a~~r~r~~~E~~~~~~~~~~~ee~~~r~p~~~~~~~~~ 696 (931)
T KOG0476|consen 627 SK---------ESMILLGSVARRYLTALLQRHI-GPEPRLVEAQKRVRTASEIFLTIFERSKKEEPPRRSPSRSEFFTMQ 696 (931)
T ss_pred Cc---------ccceeeehhHHHHHHHHHHhhc-CccHhHHHHHHHhhhhhhchhhhhhhhhccCCCCCCcccccccccc
Confidence 86 6789999999999999887522 111110000 0000
Q ss_pred --h---h---------cchhHh--------hh-h--c--------------C----------------------------
Q 007394 499 --E---K---------FSWVEL--------AE-R--E--------------G---------------------------- 511 (605)
Q Consensus 499 --~---~---------~~~~~~--------~~-~--~--------------~---------------------------- 511 (605)
+ . ....+- .. + . .
T Consensus 697 ~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~~~~~~~~p~~~~~~l~~~~~r~~~~~~~~~~ 776 (931)
T KOG0476|consen 697 RENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRDMESPLHGPAAEHHPLHKLLTRQTKVNNKKQS 776 (931)
T ss_pred ccccccccccccccCCCCchhccCccccccccccccCCccccccccccccccCCCCCccccccccccccccccccccccc
Confidence 0 0 000000 00 0 0 0
Q ss_pred ---cccc------cccChhhhhhhcccccc-cccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 512 ---KIEE------VAVTSEEMEMYIDLHPL-TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 512 ---~~~~------~~~~~~~~~~~~~v~~i-m~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+..+ .+..+....+.++.++. +++.|+.+.+.+||.|++.+|...++++..|.+. ||++|+|..
T Consensus 777 ~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~~------GrLvGVVal 850 (931)
T KOG0476|consen 777 HDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTSC------GRLVGVVAL 850 (931)
T ss_pred ccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhccc------CcEEEEEEH
Confidence 0000 00112233445666666 7889999999999999999999999999999986 999999999
Q ss_pred HHhHHHHhh
Q 007394 582 QDLRAFNIL 590 (605)
Q Consensus 582 ~Dll~~~~~ 590 (605)
+|+.++..+
T Consensus 851 kELRkAie~ 859 (931)
T KOG0476|consen 851 KELRKAIEN 859 (931)
T ss_pred HHHHHHHHh
Confidence 999998876
No 5
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=2.3e-58 Score=495.38 Aligned_cols=347 Identities=35% Similarity=0.641 Sum_probs=282.4
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhcc-CChhhhHHHHHHhHhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYF-NNDRDRRDLITCGSSSGVCAA 80 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~r~l~~~g~aagiaa~ 80 (605)
+++|+++.|++++++++++|+|+|||||++|+|+++|++++| |++.+ .++++||++++||+|||++|+
T Consensus 74 ~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAGlaAa 142 (445)
T cd03684 74 LGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAGVAVA 142 (445)
T ss_pred ccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhhhHHh
Confidence 678999999999999999999999999999999999999998 44432 377899999999999999999
Q ss_pred hccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 81 FRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 81 F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
||||++|++|++|++.++++.+.+|++++++++++++.+.+ ..|+.++...|+++. ...+++.+++++++
T Consensus 143 F~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~---------~~~~~~~~~~f~~~~-~~~~~~~~l~~~i~ 212 (445)
T cd03684 143 FGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL---------NPFGTGRLVLFEVEY-DRDWHYFELIPFIL 212 (445)
T ss_pred cCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh---------cccCCCCceEEeccC-CCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999888765 234444444565542 35678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|++||++|.+|++++.++++++++.+. ..++++.+.+++++++++.++.|+.. +.
T Consensus 213 lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~----------------~~------ 268 (445)
T cd03684 213 LGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR----------------LD------ 268 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc----------------cc------
Confidence 9999999999999999999999887641 23466777888899999998888861 11
Q ss_pred ccCCCCCchhhHHHhhcCchh-----HHHhhhcCCCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDD-----AVRNIFSSNTPTE-FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY 314 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~-----~i~~~~~~~~~~~-~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~ 314 (605)
+++.+..+ +++.+. ............. .....++++++.|+++|++|+|+|+|||.|+|++++||++
T Consensus 269 ------g~~~i~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~ 341 (445)
T cd03684 269 ------MTELLELL-FNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALF 341 (445)
T ss_pred ------hhhHHHHH-HhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHH
Confidence 11111111 110000 0000000000011 1345567778999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----------------cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 007394 315 GRLLGMAMGSY-----------------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 377 (605)
Q Consensus 315 G~~~g~~~~~~-----------------~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~ 377 (605)
|+++|.+++.. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+++++++||
T Consensus 342 G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~ 421 (445)
T cd03684 342 GRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSK 421 (445)
T ss_pred hHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHH
Confidence 99999998642 1367899999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCcHHHHHHHhcCCCCC
Q 007394 378 TVGDSF-NPSIYEIILELKGLPFL 400 (605)
Q Consensus 378 ~v~~~l-~~~iy~~~l~~~g~~~l 400 (605)
.+++.+ .+++||.+++.||+||+
T Consensus 422 ~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 422 WVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred HHHHHhCCCCHHHHHHHhcCCCCC
Confidence 999999 68999999999999985
No 6
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.9e-57 Score=490.47 Aligned_cols=336 Identities=60% Similarity=1.070 Sum_probs=286.7
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+++.|++++++++++|+|+|||||++|+||++|++++|..++.++++++++++++++++||++++||+|||+|++|
T Consensus 124 l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF 203 (466)
T cd03685 124 LRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAF 203 (466)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhcc
Confidence 57899999999999999999999999999999999999999865555666667888877889999999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++|+.+.+|+.++++.+++++.+.+.......+...|+++....|........+++.++++++++
T Consensus 204 ~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ill 283 (466)
T cd03685 204 GAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLI 283 (466)
T ss_pred CCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999888765543322233454333334444333456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++.+...++.|++.+++++++++++.+
T Consensus 284 Gi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~lv~~~~~~~~~------------------------------- 332 (466)
T cd03685 284 GVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKVLEALLVSLVTSVVAF------------------------------- 332 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999988876533455567777766666554321
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
...+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+
T Consensus 333 -----------------------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~ 377 (466)
T cd03685 333 -----------------------------------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGIL 377 (466)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHH
Confidence 122455667899999999999999999999999999999999998
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCC
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLP 398 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~~~l~~~g~~ 398 (605)
++.. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+.+++.+++++||.+++.||+|
T Consensus 378 ~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p 457 (466)
T cd03685 378 LGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVP 457 (466)
T ss_pred HHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCc
Confidence 7653 3578999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred CCCCC
Q 007394 399 FLDAH 403 (605)
Q Consensus 399 ~l~~~ 403 (605)
++++.
T Consensus 458 ~l~~~ 462 (466)
T cd03685 458 FLHNG 462 (466)
T ss_pred cccCC
Confidence 99764
No 7
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.9e-53 Score=453.24 Aligned_cols=319 Identities=22% Similarity=0.351 Sum_probs=266.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| |++ ++++||.+++||+|||+|++|
T Consensus 95 ~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~r~li~~GaaAGlaa~F 160 (418)
T PRK01610 95 FDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEWKLWIACGAAAGMASAY 160 (418)
T ss_pred CCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999998 444 467899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++++.+.+.++++++++++.+.+.+ ++.++ ..|+++ ....+++.++++++++
T Consensus 161 ~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~~-~~~~i~-~~~~~~~~~l~~~i~l 227 (418)
T PRK01610 161 HAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSDA-LLYNVQ-LSVTVQARDYALIIST 227 (418)
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC-CeeecC-CcCCCCHHHHHHHHHH
Confidence 9999999999999998888888888888888777776643 34322 145665 2456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++++.++++++++. ++++.+.+++++++++++++|++ .|.
T Consensus 228 Gii~Gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~lggli~g~l~~~~p~~----------------~G~------- 280 (418)
T PRK01610 228 GLLAGLCGPLLLTLMNASHRGFVSLKL----APPWQLALGGLIVGLLSLFTPAV----------------WGN------- 280 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc----chhHHHHHHHHHHHHHHHHhhHH----------------hCC-------
Confidence 999999999999999999988876542 23344567788888888888876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+.+ +..++ .++.+..++.+++.|+++|++|+|+|++||.|+|++++||++|.++|++
T Consensus 281 -----G~~~i------------~~~~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~ 339 (418)
T PRK01610 281 -----GYSVV------------QSFLT----APPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRS 339 (418)
T ss_pred -----cHHHH------------HHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 24322 22221 2234445666778999999999999999999999999999999999999
Q ss_pred hhcc-c--CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhc
Q 007394 322 MGSY-T--NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK 395 (605)
Q Consensus 322 ~~~~-~--~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~ 395 (605)
++.. + ...+..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+.+++.+ ++++|+.++..+
T Consensus 340 ~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 340 LGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 8753 1 233688999999999999999999999999999999999999999999999999988 899999998764
No 8
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=3.7e-54 Score=460.76 Aligned_cols=321 Identities=32% Similarity=0.575 Sum_probs=264.8
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+++.|++++++++++|+|+|||||++|+|+++++.++| .++.+ .. .++++.+||++++||+|||+||+|
T Consensus 91 l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~----~~~~~--~~-~~~~~~~rr~Li~~GaaAGlaAaF 163 (426)
T cd03683 91 LTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSK----LTTFF--SG-IYENESRRMEMLAAACAVGVACTF 163 (426)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHh----hcccc--cc-cccCHHHHHHHHHhHhhhhhHHhc
Confidence 578999999999999999999999999999999999999998 22210 00 023677889999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCce-eEEeec-cCCcccchhhHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGL-IMFDVS-NVPVRYHVMDIIPVT 159 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~-~~f~~~-~~~~~~~~~~l~~~i 159 (605)
|||++|++|++|++.++|+.+.+|++++++++++++.+.+..+.. +..+. ..|... .....++..++++++
T Consensus 164 ~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~i 236 (426)
T cd03683 164 GAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFS-------DQETITALFKTTFFVDFPFDVQELPIFA 236 (426)
T ss_pred CCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCccccccccccccCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999888876543211 11110 012111 123467889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCC
Q 007394 160 LIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG 236 (605)
Q Consensus 160 llgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g 236 (605)
++|++||++|.+|++++.++.+++++.+. ..+..+++.+++++++++++.+ |
T Consensus 237 ~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p----------------------- 291 (426)
T cd03683 237 LLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P----------------------- 291 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H-----------------------
Confidence 99999999999999999999988765432 1233567777777777664321 1
Q ss_pred CcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHH
Q 007394 237 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGR 316 (605)
Q Consensus 237 ~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~ 316 (605)
+..++++++.|+++|++|+|+|+|||.|+|++++||++|+
T Consensus 292 ----------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~ 331 (426)
T cd03683 292 ----------------------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGR 331 (426)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHH
Confidence 1235667789999999999999999999999999999999
Q ss_pred HHHHHhhccc----------CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCc
Q 007394 317 LLGMAMGSYT----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPS 386 (605)
Q Consensus 317 ~~g~~~~~~~----------~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~ 386 (605)
++|.+++... ..+|..|+++||+|++++++|+|.++ ++++|+||++++++|+++++++|+.+++.++++
T Consensus 332 ~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~ 410 (426)
T cd03683 332 LVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQPS 410 (426)
T ss_pred HHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCCC
Confidence 9999886532 36789999999999999999997766 699999999999999999999999999999889
Q ss_pred HHHHHHHhcCCCCCCC
Q 007394 387 IYEIILELKGLPFLDA 402 (605)
Q Consensus 387 iy~~~l~~~g~~~l~~ 402 (605)
+||.+++.||+|++++
T Consensus 411 iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 411 IYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHHhCCCCCCCC
Confidence 9999999999999863
No 9
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=8.2e-54 Score=457.24 Aligned_cols=321 Identities=36% Similarity=0.641 Sum_probs=263.2
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+++.|++++++++++|+|+|||||++|+|+++|++++|.....++...+++++++++++||++++||+|||+|++|
T Consensus 83 l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF 162 (416)
T cd01036 83 LSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAF 162 (416)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhcc
Confidence 67899999999999999999999999999999999999999833221111113445556788999999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-ceeEEeeccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTG-GLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~-~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|++.++|+.+.+|++++++++++++.+.+.++........+... ....++++ ...++++.+++++++
T Consensus 163 ~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~il 241 (416)
T cd01036 163 GAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFIPTVV 241 (416)
T ss_pred CCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999998888876433211000000000 00012222 235678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQK-GKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~ 239 (605)
+|++||++|.+|+++++++.+++++.+.. .++++++.+++++++++++.+
T Consensus 242 lGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------- 292 (416)
T cd01036 242 IGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY----------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-----------------------------
Confidence 99999999999999999999988765321 345677888888888765432
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
...++++++.|+++|++|+++|+|||.|+|++++||++|+++|
T Consensus 293 -------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g 335 (416)
T cd01036 293 -------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVG 335 (416)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Confidence 1234567789999999999999999999999999999999999
Q ss_pred HHhhccc-----------CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHH
Q 007394 320 MAMGSYT-----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIY 388 (605)
Q Consensus 320 ~~~~~~~-----------~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy 388 (605)
.+++... ..+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+.+++.+++++|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY 415 (416)
T cd01036 336 LLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLY 415 (416)
T ss_pred HHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9886532 36899999999999999999999999999999999999999999999999999999988998
Q ss_pred H
Q 007394 389 E 389 (605)
Q Consensus 389 ~ 389 (605)
|
T Consensus 416 ~ 416 (416)
T cd01036 416 H 416 (416)
T ss_pred C
Confidence 6
No 10
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=7.3e-53 Score=442.29 Aligned_cols=312 Identities=32% Similarity=0.613 Sum_probs=251.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|++++++++| +++.. +++++|.+++||+|||+|++|
T Consensus 36 ~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-----------~~~~~-~~~~~r~l~~~g~aAglaa~F 103 (355)
T PF00654_consen 36 LPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-----------RFRLS-RNETRRLLLAAGAAAGLAAAF 103 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH-----------HTT---CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH-----------hhccc-chHHHhHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998 44441 233378899999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEe-eccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFD-VSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~-~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|++.++++.+.++++++++++++++.+.+ +++.+ .|+ ++. ...+++.+++++++
T Consensus 104 ~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~~~~~--~f~~~~~-~~~~~~~~~~~~~l 169 (355)
T PF00654_consen 104 NAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL-----------FGNHP--IFGSVPQ-LFPFSLWELPLFLL 169 (355)
T ss_dssp T-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH-----------HTSS---SS---TT------GGGHHHHHH
T ss_pred cCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHH-----------cCcCc--ccccccc-cccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998865 34444 244 442 34789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhcccc--ccccCCCCCCCCCCCCCCCCCCCc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPF--LADCKACDPSFPETCPTNGRSGNF 238 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~--~~~~~~~~~~~~~~~~~~g~~g~~ 238 (605)
+|++||++|.+|+++++++++++++++ +.+.++++.+.+++++++++.++.|+ . .|.
T Consensus 170 lGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~~----------------~g~---- 228 (355)
T PF00654_consen 170 LGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGSV----------------LGS---- 228 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-SG----------------SSS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhcc----------------cCC----
Confidence 999999999999999999999998875 23334556888899999999999887 4 221
Q ss_pred ccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHH
Q 007394 239 KQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLL 318 (605)
Q Consensus 239 ~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~ 318 (605)
+|+ .++++++++ ...+.+..++.+++.|+++|++|+++|++||.|+|++++|+++|+++
T Consensus 229 --------G~~------------~i~~ll~~~-~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~ 287 (355)
T PF00654_consen 229 --------GYE------------LIQSLLSGS-PPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLF 287 (355)
T ss_dssp --------STT------------HHHHHCTT-----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHH
T ss_pred --------cHH------------HHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHH
Confidence 232 344444321 12467788899999999999999999999999999999999999999
Q ss_pred HHHhhccc----CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 007394 319 GMAMGSYT----NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGD 381 (605)
Q Consensus 319 g~~~~~~~----~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~ 381 (605)
+.+++... ..+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++||.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 288 GALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 99997641 2379999999999999999999999999999999999999999999999999986
No 11
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.4e-51 Score=434.38 Aligned_cols=305 Identities=22% Similarity=0.333 Sum_probs=256.4
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|.+++++++++|+|+|||||++|+|++++++++| +++. ++++||.+++||+|||+|++|
T Consensus 80 ~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGlaa~F 146 (388)
T cd01033 80 MPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGLAAVY 146 (388)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999999999999999998 5554 678899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|+++++++.+.+++.++++++++.+.+. ++++++ .|.++. .++++.++++++++
T Consensus 147 ~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~-----------~~g~~~--~f~~~~--~~~~~~~l~~~ill 211 (388)
T cd01033 147 NVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASL-----------LKGDHP--IYDIPP--MQLSTPLLIWALLA 211 (388)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----------hCCCCc--eeecCC--CCCCHHHHHHHHHH
Confidence 999999999999999999999999999998888887775 346666 455552 34568899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|+++++++++++++.+ +.+..+.+++++++++.+++|+. .|.
T Consensus 212 Gi~~Gl~~~lf~~~~~~~~~~~~~~~-----~~~~~~~l~gl~~g~~~~~~p~~----------------~G~------- 263 (388)
T cd01033 212 GPVLGVVAAGFRRLSQAARAKRPKGK-----RILWQMPLAFLVIGLLSIFFPQI----------------LGN------- 263 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHHHHHHHH----------------hCC-------
Confidence 99999999999999999988774321 12233456677888888888876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+. ++.+++ ++.+...++.+++.|+++|++|+|+|++||.|+|++++||++|+++|++
T Consensus 264 -----G~~~------------i~~~~~----~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~ 322 (388)
T cd01033 264 -----GRAL------------AQLAFS----TTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIV 322 (388)
T ss_pred -----cHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH
Confidence 2322 223332 2244556677889999999999999999999999999999999999999
Q ss_pred hhcc-cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhc
Q 007394 322 MGSY-TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NLLLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 322 ~~~~-~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~~~~l~p~~~a~~~a~~v~~~l 383 (605)
++.. +..++..|+++||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 323 ~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 323 WNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8653 356788999999999999999999999999999999 8999999999999999999865
No 12
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3e-51 Score=437.42 Aligned_cols=318 Identities=30% Similarity=0.510 Sum_probs=270.7
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+.+|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++. ++.++|.+++||+|||++++|
T Consensus 81 ~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag~aa~f 147 (402)
T cd01031 81 NWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAGLAAAF 147 (402)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHhHHHHh
Confidence 467899999999999999999999999999999999999998 4444 577899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++++.+.+++.++++++++++.+. .+++++ .|.++ ..+.+++.++++++++
T Consensus 148 ~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~-----------~~~~~~--~~~~~-~~~~~~~~~l~~~ill 213 (402)
T cd01031 148 NAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRL-----------FFGLGP--VLSIP-PLPALPLKSYWLLLLL 213 (402)
T ss_pred CCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH-----------HcCCCc--eEecC-CCCCCCHHHHHHHHHH
Confidence 999999999999999988888899999998888887764 345555 45554 2456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++.+.+.+++++++++. ++++.+.+++++++++.++.|+. .|.
T Consensus 214 Gv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~l~gl~~~~~~~~~p~~----------------~g~------- 267 (402)
T cd01031 214 GIIAGLLGYLFNRSLLKSQDLYRKLKKL---PRELRVLLPGLLIGPLGLLLPEA----------------LGG------- 267 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---ChhHHHHHHHHHHHHHHHHHHHH----------------hCC-------
Confidence 9999999999999999999998875322 23444556777888888878876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+| +.++.+++ +++++..++.+++.|+++|++|+++|++||.|+|++++||++|+++|++
T Consensus 268 -----G~------------~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~ 326 (402)
T cd01031 268 -----GH------------GLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTI 326 (402)
T ss_pred -----HH------------HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 12 22333332 3456677778889999999999999999999999999999999999998
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHH
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILE 393 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~ 393 (605)
++.. ...+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++|+.+++.+ ++++||.+++
T Consensus 327 ~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 327 LVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred HHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 8752 2468999999999999999999999999999999999999999999999999999998 8999998763
No 13
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=434.13 Aligned_cols=325 Identities=29% Similarity=0.506 Sum_probs=270.9
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|..+.|++++++++++|+|+|||||++|+|+++|+.++| |++. ++++||.+++||+|||+|++|
T Consensus 108 ~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~Ll~~GaAaGlaaaF 174 (443)
T COG0038 108 ISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRILLAAGAAAGLAAAF 174 (443)
T ss_pred ccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998 5655 678999999999999999999
Q ss_pred ccchhHHHHHHHHhcch-hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATW-WRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|+++++ +..+.++++++++.++..+...+ ++.+. .+.++. ...++.++++.+++
T Consensus 175 ~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~~~~~~~ 240 (443)
T COG0038 175 NAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-----------GGPHF--LLPIVT-TPHMSLWDLLLYLV 240 (443)
T ss_pred CCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc-----------CCCCc--eeeccc-cCcCCHHHHHHHHH
Confidence 99999999999999987 88888888888887777776642 23222 344432 56688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|+++|++|.+|.+++...++++++.+ ..+.+.+.+++++++.+.++.|+. .|.
T Consensus 241 lGii~G~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~g~~~l~~P~~----------------lg~------ 294 (443)
T COG0038 241 LGIIAGLFGVLLSRLLALSRRFFRRLP----LPPLLRPALGGLLVGALGLLFPEV----------------LGN------ 294 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHhchhh----------------hCC------
Confidence 999999999999999987766666543 235666777888888899988887 221
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM 320 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~ 320 (605)
+|+..... + ..++.+..++.+++.|+++|++|+|+|+|||+|+|++++||++|.++|.
T Consensus 295 ------G~~~~~~~------------~----~~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~ 352 (443)
T COG0038 295 ------GYGLIQLA------------L----AGEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGA 352 (443)
T ss_pred ------CccHHHHH------------H----ccCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHH
Confidence 12221111 1 1223333366778999999999999999999999999999999999999
Q ss_pred Hhhccc---CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhcC
Q 007394 321 AMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKG 396 (605)
Q Consensus 321 ~~~~~~---~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~g 396 (605)
+++... ...+..|+++||+|++++++|+|+|++++++||||+++.++|++++++++|.+++.+ ++++|+..+++++
T Consensus 353 ~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~ 432 (443)
T COG0038 353 LLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRG 432 (443)
T ss_pred HHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcC
Confidence 887632 245679999999999999999999999999999999999999999999999999988 8899999999988
Q ss_pred CCCCC
Q 007394 397 LPFLD 401 (605)
Q Consensus 397 ~~~l~ 401 (605)
.+..+
T Consensus 433 ~~~~~ 437 (443)
T COG0038 433 APILR 437 (443)
T ss_pred chhhh
Confidence 76443
No 14
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=5.5e-51 Score=433.05 Aligned_cols=314 Identities=24% Similarity=0.394 Sum_probs=255.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++.. ++.+||++++||+|||+|++|
T Consensus 75 ~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~~-~~~~~r~li~~GaaAGlaa~F 142 (390)
T cd01034 75 LSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPKW-GGLSERGLILAGGAAGLAAAF 142 (390)
T ss_pred ccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------HcccC-chHHHHHHHHHHHHHhHHHHh
Confidence 678999999999999999999999999999999999999998 44431 367899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++++.+.+++.+.++.+++++.+. ++++.+ .|.++. ...+++.++++++++
T Consensus 143 ~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~g~~~--~f~~~~-~~~~~~~~~~~~ill 208 (390)
T cd01034 143 NTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLA-----------VLGNYP--YFGVAA-VALPLGEAWLLVLVC 208 (390)
T ss_pred CCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----------HcCCCC--ccCCCC-CCcCCHHHHHHHHHH
Confidence 999999999999999998888888888777777776654 345544 344442 234678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQ-KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
|++||++|.+|++.+.++++++++... +...++++.+.+++++++++.++.|... .|.
T Consensus 209 Gii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~---------------~G~------ 267 (390)
T cd01034 209 GVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLT---------------FGT------ 267 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCcc---------------ccC------
Confidence 999999999999999999988876532 2233445666677777777776654210 111
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM 320 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~ 320 (605)
+|+.+ +..++++. .. ...+++.|+++|.+|+|+|+|||+|+|++++||++|+++++
T Consensus 268 ------G~~~i------------~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~ 323 (390)
T cd01034 268 ------GYLQA------------RAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA 323 (390)
T ss_pred ------cHHHH------------HHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH
Confidence 23333 22222211 11 12456799999999999999999999999999999999999
Q ss_pred HhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHH
Q 007394 321 AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYE 389 (605)
Q Consensus 321 ~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~ 389 (605)
+++ ..++..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+.+++.+ ++++||
T Consensus 324 ~~~---~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 324 LLG---SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred Hhc---CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 885 258999999999999999999999999999999999999999999999999999998 788885
No 15
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=2.5e-50 Score=434.39 Aligned_cols=322 Identities=27% Similarity=0.493 Sum_probs=267.1
Q ss_pred cchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhhcc
Q 007394 4 ATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRA 83 (605)
Q Consensus 4 ~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F~a 83 (605)
+|+.+.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++||+|||++++|||
T Consensus 90 ~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~~G~aaglaa~f~A 157 (438)
T PRK05277 90 WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLAAGAAAGLAAAFNA 157 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHHHHHHHhHHHhcCC
Confidence 5788999999999999999999999999999999999998 4443 156789999999999999999999
Q ss_pred chhHHHHHHHHhcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 84 PVGGVLFSLEEVATW--WRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 84 Pl~g~lF~~E~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|++|++|++|++.++ ++.+.+++.++++++++.+.+.+ +++++ .|+++. ...+++.++++++++
T Consensus 158 Pl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~g~~~--~~~~~~-~~~~~~~~l~~~i~l 223 (438)
T PRK05277 158 PLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF-----------NGEQA--VIEVGK-FSAPPLNTLWLFLLL 223 (438)
T ss_pred chHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-----------cCCCc--eEeccC-CCCCCHHHHHHHHHH
Confidence 999999999998764 46667788888888887777653 34444 355542 344678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++++...+++.++.+.+++++++.+.++.|+. .|.
T Consensus 224 Gi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~----------------~g~------- 280 (438)
T PRK05277 224 GIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA----------------VGG------- 280 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh----------------cCC-------
Confidence 999999999999999999999887644333344455667778888888877765 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+. ++..++ +++++..++.+++.|+++|++|+|+|++||.|+|++++||++|+++|++
T Consensus 281 -----G~~~------------i~~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~ 339 (438)
T PRK05277 281 -----GFNL------------IPIALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMV 339 (438)
T ss_pred -----hHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 222322 2355666777889999999999999999999999999999999999998
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhc
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK 395 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~ 395 (605)
+... ...+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++|+.+++.+ ++++|+.++++.
T Consensus 340 ~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 340 AAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 7652 2467899999999999999999999999999999999999999999999999999999 789999999874
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.2e-46 Score=400.15 Aligned_cols=301 Identities=28% Similarity=0.521 Sum_probs=254.8
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++. ++.++|.+++||++||++++|
T Consensus 80 ~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aaglaa~f 146 (383)
T cd00400 80 LPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGIAAAF 146 (383)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999998 4443 567899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.+++..+.++++++++++++.+.+.+ +++.+ .|+++ ...++++.++++++++
T Consensus 147 ~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~-----------~~~~~--~~~~~-~~~~~~~~~~~~~il~ 212 (383)
T cd00400 147 NAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL-----------FGAEP--AFGVP-LYDPLSLLELPLYLLL 212 (383)
T ss_pred CChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--eeeCC-CCCcCCHHHHHHHHHH
Confidence 9999999999999998888888889998888888887753 33433 45554 2467899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++++ +++.+.+.+++++++++.++.|+. .|.
T Consensus 213 Gv~~g~~g~~f~~~~~~~~~~~~~~~----~~~~~~~~i~gll~~~~~~~~p~~----------------~g~------- 265 (383)
T cd00400 213 GLLAGLVGVLFVRLLYKIERLFRRLP----IPPWLRPALGGLLLGLLGLFLPQV----------------LGS------- 265 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHHHH----------------HcC-------
Confidence 99999999999999999999887642 234556667788888888888886 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+.. +..+ .++++...++.+++.|+++|++|+++|+|||.|+|++++||++|++++++
T Consensus 266 -----G~~~~------------~~~~----~~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~ 324 (383)
T cd00400 266 -----GYGAI------------LLAL----AGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLL 324 (383)
T ss_pred -----cHHHH------------HHHH----cCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 13222 2222 12455666777889999999999999999999999999999999999999
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 377 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~ 377 (605)
++.. ...++..|+++||+|++++++|+|++++++++|+||+++.++|+++++++||
T Consensus 325 ~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 325 LPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 8752 3468999999999999999999999999999999999999999999998875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=9.5e-46 Score=391.05 Aligned_cols=305 Identities=22% Similarity=0.337 Sum_probs=242.7
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|..+.|++++.+++++|+|+|||||++|+|++++++++| ++|. +++++|.+++||+|||++++|
T Consensus 73 ~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~aAglaa~f 139 (378)
T cd03682 73 IPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGIAAGFAAVF 139 (378)
T ss_pred CchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998 4443 566889999999999999999
Q ss_pred ccchhHHHHHHHHhc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVA-TWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|+++ ++++.+.+++.++++.+++.+.+.+ +..+. .|.++ ..+++++.+++++++
T Consensus 140 ~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~------------~~~~~-~~~~~-~~~~~~~~~l~~~i~ 205 (378)
T cd03682 140 GTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL------------GLEHT-HYHIV-FIPTLDPLLFVKVIL 205 (378)
T ss_pred CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------------CCCCC-ccccC-CCCCCCHHHHHHHHH
Confidence 999999999999996 6677777778888777777666542 11111 24433 235678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|++||++|.+|+++++++++++++... .+++.+.+++++++++.++.+.-. . .|
T Consensus 206 ~Gi~~gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~iggl~~g~~~~~~~~~~------------~--~G------- 260 (378)
T cd03682 206 AGIIFGLAGRLFAELLHFLKKLLKKRIK----NPYLRPFVGGLLIILLVYLLGSRR------------Y--LG------- 260 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHhcCCc------------c--cc-------
Confidence 9999999999999999999998876432 234455666777777666543210 0 11
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM 320 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~ 320 (605)
.+|+.+... +++ ++.+ ....+.|+++|++|+|+|+|||.|+|++++||++|+++++
T Consensus 261 -----~g~~~i~~~-----------~~~----~~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~ 316 (378)
T cd03682 261 -----LGTPLIEDS-----------FFG----GTVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP 316 (378)
T ss_pred -----CCHHHHHHH-----------Hhc----CCch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH
Confidence 123222210 111 1122 2235799999999999999999999999999999999999
Q ss_pred HhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHH
Q 007394 321 AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE 389 (605)
Q Consensus 321 ~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~ 389 (605)
++ ..++..|+++||+|++++++|+|+|++++++|+|| ++.++|+++++++||.+++ ++++|+
T Consensus 317 ~~----~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 317 IL----GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HH----CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 98 46788999999999999999999999999999999 5788899999999999987 777874
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=372.27 Aligned_cols=295 Identities=15% Similarity=0.199 Sum_probs=224.8
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
++.+....|++++++++++|+|+|||||++|+|++++++++| +++ ++.++|+++.||+|||+||+|
T Consensus 95 ~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l~~~gaAaGiaAaF 160 (414)
T PRK03655 95 VPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDWTILASAGTIGALF 160 (414)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHHHHHHHHHHHHHHh
Confidence 356788899999999999999999999999999999999998 332 234567789999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhh---HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSAL---LWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 158 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ 158 (605)
|||++|++|++|++.+++..+. ...++.++++++.+.+. .++ +...++++ ....++..+++++
T Consensus 161 naPLaG~lFa~E~l~~~~~~~~~~~~~~~v~aa~~a~~v~~~-----------~~~--~~~~~~~~-~~~~~~~~~~~~~ 226 (414)
T PRK03655 161 GTPVAAALIFSQTLNGSNEVPLWDRLFAPLMAAAAGALTTGL-----------FFH--PHFSLPIA-HYGQMEMTDILSG 226 (414)
T ss_pred CchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----------hCC--CCcceecC-CCCCCCHHHHHHH
Confidence 9999999999999988776422 12222333333333322 111 22233443 2345677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhcc-ccccccCCCCCCCCCCCCCCCCCCC
Q 007394 159 TLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCL-PFLADCKACDPSFPETCPTNGRSGN 237 (605)
Q Consensus 159 illgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~~~~~~~~~~~~~~~~~g~~g~ 237 (605)
+++|++||++|.+|++...+.++++++++. +.....++|++++.++++. |+. .|
T Consensus 227 l~lgi~~gl~G~lf~~~~~~~~~~~~~~~~-----p~~~~~lgGl~vg~l~l~~~~~~----------------~g---- 281 (414)
T PRK03655 227 AIVAAIAIAAGMVAVWCLPRLHALMHRLKN-----PVLVLGIGGFILGILGVIGGPLT----------------LF---- 281 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHhCCcc----------------cc----
Confidence 999999999999999999998888776432 2233456677777777653 332 12
Q ss_pred cccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 007394 238 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 317 (605)
Q Consensus 238 ~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~ 317 (605)
.+|+.+.... .. .++++..++++.+.|+++|++|+++|+|||.|+|++++||++|..
T Consensus 282 --------~Gy~~i~~~~------------~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~ 338 (414)
T PRK03655 282 --------KGLDEMQQMA------------AN---QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLM 338 (414)
T ss_pred --------CCHHHHHHHH------------hc---CCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHH
Confidence 1354443322 11 245666777788999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcHHHHHHHHHhhhhhhcc----hhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 007394 318 LGMAMGSYTNIDQGLYAVLGAASLMAGSMR----MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVG 380 (605)
Q Consensus 318 ~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~----~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~ 380 (605)
++++++ ..++...+++||+|++++++| +|+|++++++||| +.|+|++++++.++.
T Consensus 339 ~~~l~p---~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 339 LHAHVP---AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHhcc---CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 999884 467888999999999999999 5999999999999 777888777766654
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.74 E-value=7.3e-17 Score=155.34 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=114.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.++++.|||++ +++++++++++.++.+.|.+++++.+||+|++ .+++|+|+++|+.+.....-
T Consensus 242 ~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----------~rl~GiVt~~dl~~~a~~~p--- 305 (382)
T COG3448 242 MGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----------RRLVGIVTQRDLLKHARPSP--- 305 (382)
T ss_pred hccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccc-----------cceeeeeeHHHHhhccCcch---
Confidence 457799999999 99999999999999999999999999999998 89999999999965321100
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
.+.++ ++ ...+++.+|+++..|+.+|++..|....|.+.+.+++||+|+
T Consensus 306 ------~qrlr-------~~-----------------~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~- 354 (382)
T COG3448 306 ------FQRLR-------FL-----------------RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA- 354 (382)
T ss_pred ------HHHhh-------cc-----------------CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-
Confidence 00000 11 124689999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
+|+++||||++|++.++.++..
T Consensus 355 ----~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 355 ----AGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred ----CCcEEEEeeHHHHHHHHHHHHH
Confidence 8999999999999998876543
No 20
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.74 E-value=1.1e-16 Score=178.99 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCC
Q 007394 154 DIIPVTLIGIIGGILGGLYNHILHKVLRLYNL--------INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 225 (605)
Q Consensus 154 ~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 225 (605)
.+...+++|+++|+++.+|.+++++.++++-. ....+++++++.++++|++++.+.++.....
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~--------- 94 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGA--------- 94 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 45667999999999999999999999888531 1222234456667777777776554332210
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchh
Q 007394 226 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 305 (605)
Q Consensus 226 ~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~ 305 (605)
.+. | .- +.++....+ .+..++. ..+.|++.+++|+|+|.|.|.+.
T Consensus 95 ------~~~-g----------~~------------~~~~~~~~~--~~~~~~~----~~~~k~~~~~l~i~~G~s~G~Eg 139 (574)
T PRK01862 95 ------RKG-G----------KT------------DYMEAVALG--DGVVPVR----QSLWRSASSLLTIGSGGSIGREG 139 (574)
T ss_pred ------ccC-C----------cH------------HHHHHHHcC--CCCCChH----HHHHHHHHHHHHHHcCCCcCCcc
Confidence 000 0 01 112222111 1223332 23459999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHHHhh
Q 007394 306 PIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTVGDS 382 (605)
Q Consensus 306 Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v~~~ 382 (605)
|++++||++|..++++++.. ......+.+||+||.+|+++++|++++++.+|.. +++. .+.|.++++++++.+++.
T Consensus 140 P~v~~ga~~~~~~~~~~~~~-~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~ 218 (574)
T PRK01862 140 PMVQLAALAASLVGRFAHFD-PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMRE 218 (574)
T ss_pred hHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998421 2344678999999999999999999999999975 6664 588899999999999987
Q ss_pred c
Q 007394 383 F 383 (605)
Q Consensus 383 l 383 (605)
+
T Consensus 219 ~ 219 (574)
T PRK01862 219 F 219 (574)
T ss_pred H
Confidence 6
No 21
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=2e-16 Score=150.04 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=111.4
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
.-+.+|+++|++ +++++.+++|++|+.+.|.++++++.||+|+ ++++|+++..|+..++.+..
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------------dk~vGiit~~dI~~aia~g~--- 231 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD------------DKIVGIITLSDIAKAIANGN--- 231 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC------------CceEEEEEHHHHHHHHHcCC---
Confidence 345689999999 9999999999999999999999999999998 59999999999988766532
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++|.++++++.+|+.+.||+++|..+++.++.|+|.
T Consensus 232 -------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds- 273 (294)
T COG2524 232 -------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS- 273 (294)
T ss_pred -------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-
Confidence 124688999999999999999999999999999999999997
Q ss_pred ccCCCCceEEEEeHHHhHHHHh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+.+|+|||+|+++...
T Consensus 274 ----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 274 ----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ----CCcEEEEEehHHHHHHhh
Confidence 799999999999998764
No 22
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.63 E-value=1.7e-15 Score=157.78 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=125.4
Q ss_pred CCcHHHHHHHhcCCCC---CCCCCCcccc---ccccccccccCCC--eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCC
Q 007394 384 NPSIYEIILELKGLPF---LDAHPEPWMR---TLTVGELIDAKPP--VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV 455 (605)
Q Consensus 384 ~~~iy~~~l~~~g~~~---l~~~~~~~l~---~~~v~diM~~~~~--v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~ 455 (605)
...+|...+..+|... ...++...+. ..+|+++|.+ + ++++++++++.++.+.|.+++...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--
Confidence 4478888888888766 6667777888 8999999999 6 9999999999999999988888899999987
Q ss_pred CCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc
Q 007394 456 PPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 535 (605)
Q Consensus 456 ~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 535 (605)
++++|+|+.+|+.+.+..... ...+++++|++
T Consensus 240 ---------g~~iG~vt~~dl~~~~~~~~~---------------------------------------~~~~v~~im~~ 271 (321)
T PRK11543 240 ---------QQVQGVFTDGDLRRWLVGGGA---------------------------------------LTTPVNEAMTR 271 (321)
T ss_pred ---------CcEEEEecHHHHHHHHhCCCC---------------------------------------cCCcHHHhcCC
Confidence 899999999999764432100 01236788889
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
++.++.+++++.++++.|.+++.+.+||||+ +++++|+||++|++++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 9999999999999999999999999999998 7899999999999874
No 23
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.62 E-value=2.8e-15 Score=156.40 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=123.2
Q ss_pred CCcHHHHHHHhcCCCC---CCCCCCccc---cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCC
Q 007394 384 NPSIYEIILELKGLPF---LDAHPEPWM---RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457 (605)
Q Consensus 384 ~~~iy~~~l~~~g~~~---l~~~~~~~l---~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~ 457 (605)
..++|...+..+|... ...++...+ ..++|+|+|.+..+++++++++++.++.+.|.+++++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----
Confidence 5578888888888766 666666666 889999999853368899999999999999988887777888877
Q ss_pred CCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCC
Q 007394 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537 (605)
Q Consensus 458 ~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 537 (605)
++++|+|+.+|+.+.+.+... ....+++++|++++
T Consensus 245 -------g~lvGivt~~Dl~~~~~~~~~--------------------------------------~~~~~v~~im~~~~ 279 (326)
T PRK10892 245 -------MKIEGIFTDGDLRRVFDMGID--------------------------------------LRQASIADVMTPGG 279 (326)
T ss_pred -------CcEEEEEecHHHHHHHhcCCC--------------------------------------cccCCHHHhcCCCC
Confidence 899999999999764322100 00135778899999
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 538 ~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
.++.+++++.++++.|.+++.+++||+|+ ++++|+||++|++++.
T Consensus 280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~~~ 324 (326)
T PRK10892 280 IRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLRAG 324 (326)
T ss_pred EEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHhcc
Confidence 99999999999999999999999999986 7999999999999753
No 24
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.61 E-value=1.1e-14 Score=155.23 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------hccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCC
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLIN-------QKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGR 234 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~ 234 (605)
|+++|+++.+|.+++.+.++++.+.. ..+++++.+.+++++++++.+..+.|.. .|.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~----------------~g~ 64 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPA----------------RGH 64 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcc----------------cCC
Confidence 68999999999999999999876542 1223445566777777777666544321 111
Q ss_pred CCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHH
Q 007394 235 SGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY 314 (605)
Q Consensus 235 ~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~ 314 (605)
+++++..... .+ ....+ ....+.|++.+.+|+++|.++|.+.|++++|+++
T Consensus 65 ------------G~~~v~~~~~------------~~-~~~~~----~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~ 115 (383)
T cd00400 65 ------------GIPEVIEAIA------------LG-GGRLP----LRVALVKFLASALTLGSGGSVGREGPIVQIGAAI 115 (383)
T ss_pred ------------ChHHHHHHHH------------hC-CCCCC----HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Confidence 2333322111 10 11112 2245689999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHhhc
Q 007394 315 GRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLL---LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 315 G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~---~l~p~~~a~~~a~~v~~~l 383 (605)
|..+++.++. ...+...++++||+|.+++++++|++++++++|++++.. .+.|+++++++++.+++.+
T Consensus 116 g~~~~~~~~~-~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~ 186 (383)
T cd00400 116 GSWLGRRLRL-SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL 186 (383)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998853 234567899999999999999999999999999997655 6889999999999999877
No 25
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.58 E-value=3e-15 Score=147.71 Aligned_cols=206 Identities=20% Similarity=0.247 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccc----C--CCcHHHHH-HHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 007394 305 LPIILMGSAYGRLLGMAMGSYT----N--IDQGLYAV-LGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 377 (605)
Q Consensus 305 ~Psl~iGa~~G~~~g~~~~~~~----~--~~~~~~a~-~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~ 377 (605)
.-=++|||+-=-.+...+.... + .+....|+ -|+|-..+|-+..-= =+.++.. +.-+|++-++.=.+
T Consensus 95 ~sKFvIGAMt~~~i~rY~~~g~LlIVGnR~~iq~lAL~~~~AVLvTGGF~~s~----evi~lAn--e~~lPvlstsYDTF 168 (432)
T COG4109 95 LSKFVIGAMTLDAILRYLDPGGLLIVGNREDIQLLALENGNAVLVTGGFDVSD----EVIKLAN--EKGLPVLSTSYDTF 168 (432)
T ss_pred hhhhhhhhhhHHHHHhhcCCCceEEEecHHHHHHHHHhcCCeEEEeCCCCccH----HHHHhhc--ccCCceEEecccce
Confidence 3345677766666655543210 0 11222333 344444455443221 1122222 23467777777788
Q ss_pred HHHhhcCCcHHHHHHHhcCCCCCCCCCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCC
Q 007394 378 TVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457 (605)
Q Consensus 378 ~v~~~l~~~iy~~~l~~~g~~~l~~~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~ 457 (605)
.++.++++.+|+.+++.. -++|+|+|.|.++..++++++++++..+.-.+++|+.|||+|+.
T Consensus 169 TVAtmIN~Al~n~lIKkd--------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~---- 230 (432)
T COG4109 169 TVATMINKALSNQLIKKD--------------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS---- 230 (432)
T ss_pred eHHHHHHHHHHHhhhhhh--------------eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc----
Confidence 888888999999988752 36899999977688999999999999999999999999999998
Q ss_pred CCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCC
Q 007394 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537 (605)
Q Consensus 458 ~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 537 (605)
.+++|+|+.+|+... + ...++..+|+++|
T Consensus 231 -------~kvvGvVt~rDv~~~--------~------------------------------------~~t~ieKVMtknp 259 (432)
T COG4109 231 -------MKVVGVVTMRDVLDK--------K------------------------------------PSTTIEKVMTKNP 259 (432)
T ss_pred -------ceEEEEEEehhhhcC--------C------------------------------------CCccHHHHhccCC
Confidence 899999999999431 0 1134678899999
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 538 ~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.++.+.+++..+.+.|.=.+++.+||+|+ +.+++|+|||+|+++.++.
T Consensus 260 ~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 260 ITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred eeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999998875
No 26
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.57 E-value=2.5e-14 Score=153.16 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchh---hHHHHHHHHHHHhhhhh-ccccccccCCCCCCCCCCCCCCC
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQK---GKMH---KLLLALSVSVFTSVCQY-CLPFLADCKACDPSFPETCPTNG 233 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~g 233 (605)
+|+++|+++.+|.++++++++++...... .+++ .++.+.+++++.+.+.. +.|+. .|
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~----------------~g 64 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEA----------------KG 64 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcc----------------CC
Confidence 48899999999999999999987653321 1111 12333444555544332 24443 11
Q ss_pred CCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHH
Q 007394 234 RSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSA 313 (605)
Q Consensus 234 ~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~ 313 (605)
.+++++.. .++.+. .... .-..+.|++.+++|+|+|.|+|.+.|++++|++
T Consensus 65 ------------~G~~~v~~------------~l~~~~-~~~~----~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ 115 (402)
T cd01031 65 ------------SGIPQVEG------------VLAGLL-PPNW----WRVLPVKFVGGVLALGSGLSLGREGPSVQIGAA 115 (402)
T ss_pred ------------CCHHHHHH------------HHcCCC-Cccc----HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence 12333322 222211 1111 224568999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHH-HhcCCc--chHHHHHHHHHHHHHHhhc
Q 007394 314 YGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE-LTNNLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 314 ~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E-~tg~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
+|..+++.++.. ..+...++.+||+|.+++++|+|++++++.+| ++++++ .+.|+++++++++.+++.+
T Consensus 116 ig~~~~~~~~~~-~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 116 IGQGVSKWFKTS-PEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988532 34567899999999999999999999999999 777766 6889999999999998865
No 27
>PRK05277 chloride channel protein; Provisional
Probab=99.57 E-value=7.3e-14 Score=151.12 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhhHHHHHHHHHHHhhhhh-----ccccccccCCCCCCCCC
Q 007394 156 IPVTLIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLLALSVSVFTSVCQY-----CLPFLADCKACDPSFPE 227 (605)
Q Consensus 156 ~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~-----~~p~~~~~~~~~~~~~~ 227 (605)
.+.+++|+++|+++.+|.++++++++++..+.. ...+..+...++++.+.+.++. +.|+.
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~------------ 69 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEA------------ 69 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCccc------------
Confidence 467899999999999999999999998754321 1112222222222222222221 22322
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHH
Q 007394 228 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 307 (605)
Q Consensus 228 ~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Ps 307 (605)
.| .++.++... ++.. ..... .-....|++.+.+++|+|.++|.+.|+
T Consensus 70 ----~G------------sGi~~i~~~------------l~~~--~~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~ 116 (438)
T PRK05277 70 ----GG------------SGIPEIEGA------------LEGL--RPVRW---WRVLPVKFFGGLGTLGSGMVLGREGPT 116 (438)
T ss_pred ----CC------------CCHHHHHHH------------HcCC--Cccch---HHHHHHHHHHHHHHHhcCCCCCCCCcH
Confidence 11 123333322 2211 11111 113468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHH-HhcC--Cc--chHHHHHHHHHHHHHHhh
Q 007394 308 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE-LTNN--LL--LLPITMIVLLIAKTVGDS 382 (605)
Q Consensus 308 l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E-~tg~--~~--~l~p~~~a~~~a~~v~~~ 382 (605)
+++|+++|..+++.++.....+...+.++||+|.+++++++|++++++.+| ++++ ++ .+.|+++++++|+.+.+.
T Consensus 117 v~iGa~ig~~~~~~~~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~ 196 (438)
T PRK05277 117 VQMGGNIGRMVLDIFRLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRL 196 (438)
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998542234567899999999999999999999999999 5663 34 378899999999999887
Q ss_pred c
Q 007394 383 F 383 (605)
Q Consensus 383 l 383 (605)
+
T Consensus 197 ~ 197 (438)
T PRK05277 197 F 197 (438)
T ss_pred h
Confidence 6
No 28
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.54 E-value=3e-14 Score=125.46 Aligned_cols=123 Identities=23% Similarity=0.336 Sum_probs=105.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
..++++.+|.. +++.+++++++.+++++|++++++.+||+++ ++++|-|+.+++.+.+.+..
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------------~k~VGsItE~~iv~~~le~~---- 124 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE------------DKVVGSITENDIVRALLEGM---- 124 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC------------CeeeeeecHHHHHHHHhccc----
Confidence 46889999999 9999999999999999999999999999998 69999999999988765421
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
+++ ....++++|..+.+++.+++++..+.+++..++. +.|++
T Consensus 125 ---------------e~i------------------~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--- 166 (187)
T COG3620 125 ---------------ESI------------------RSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--- 166 (187)
T ss_pred ---------------cch------------------hhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe---
Confidence 000 1256889999999999999999999999887654 77775
Q ss_pred cCCCCceEEEEeHHHhHHHHhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++||||+.|+++....
T Consensus 167 ---~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 167 ---NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ---CCceEEEEeHHHHHHHHhc
Confidence 4999999999999987653
No 29
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.51 E-value=9.6e-14 Score=148.16 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=110.4
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++.+|+|+|+|+.++++++.+++++++.+.+.+++++.+||++++. ++++|+++.+|++..+.++
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~----------d~ivGiv~~kDll~~~~~~---- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETI----------DNITGVLYIKDLLPHLNKK---- 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCC----------CceEEEEEHHHHHhHhccC----
Confidence 66889999999988999999999999999999999999999998742 6899999999997532110
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
..+++++| +++.++++++++.++++.|++.+.+..+|+|+
T Consensus 254 --------------------------------------~~~l~~~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE- 293 (408)
T TIGR03520 254 --------------------------------------NFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE- 293 (408)
T ss_pred --------------------------------------CCCHHHHc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-
Confidence 01244555 46789999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
.|.++|+||.+|+++....+..++
T Consensus 294 ----~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 294 ----YGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred ----CCCEEEEEEHHHHHHHHhCCCCCc
Confidence 799999999999999987655443
No 30
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=3.2e-13 Score=119.17 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=94.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+...+.++..... ..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~-----------~~ 59 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-----------GKVVDVYSRFDVINLAKEGAYNNL-----------DL 59 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEeHHHHHHHHhcCccccc-----------cC
Confidence 67889999999999999999999999999987 899999999999875433211000 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+..+ ....+++|..++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 60 ~~~~--------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~ 114 (120)
T cd04641 60 TVGE--------------------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISL 114 (120)
T ss_pred CHHH--------------------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEH
Confidence 0000 01234556677889999999999999999999999999998 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 115 ~di~~ 119 (120)
T cd04641 115 SDILQ 119 (120)
T ss_pred HHhhc
Confidence 99986
No 31
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.49 E-value=8e-13 Score=141.57 Aligned_cols=185 Identities=14% Similarity=0.180 Sum_probs=136.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhccchhhHHHHHHHHHHHhhhhhcc-ccccccCCCC
Q 007394 153 MDIIPVTLIGIIGGILGGLYNHILHKVLRLYNL---------INQKGKMHKLLLALSVSVFTSVCQYCL-PFLADCKACD 222 (605)
Q Consensus 153 ~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~~~~~~~ 222 (605)
+.+...+++|+++|+.+.+|.++++++++++-. ....++|++++.+.++|++++.+.+++ |+. .
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~-~----- 76 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFT-Q----- 76 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccc-c-----
Confidence 456677899999999999999999988775311 122345667777888888888766543 221 0
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcc
Q 007394 223 PSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302 (605)
Q Consensus 223 ~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 302 (605)
..+. | -+++ ++.. +. .+..+.. -.+.|++.+.+++|+|.|.|
T Consensus 77 --------~~~~-g-----------~~~v-----------i~av-~~--~g~~~~~----~~~~k~~~~~l~igsG~S~G 118 (418)
T PRK01610 77 --------QRPH-A-----------PTDY-----------MEAL-QT--DGQFDYA----ASLVKSLASLLVVTSGSAIG 118 (418)
T ss_pred --------ccCC-C-----------cHHH-----------HHHH-Hc--CCCCCcc----HHHHHHHHHHHHHHcCCccc
Confidence 0000 0 1111 1111 11 1222332 24579999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHH
Q 007394 303 LFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTV 379 (605)
Q Consensus 303 ~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v 379 (605)
++.|+.++|+++|..++++++. ..+...+..||++|.+++++++|++++++.+|.. +++. .+.|+++++++++.+
T Consensus 119 rEGP~v~iGa~~g~~~~~~~~~--~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v 196 (418)
T PRK01610 119 REGAMILLAALAASCFAQRFTP--RQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLT 196 (418)
T ss_pred cccHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999962 4566789999999999999999999999999974 6554 588999999999999
Q ss_pred Hhhc
Q 007394 380 GDSF 383 (605)
Q Consensus 380 ~~~l 383 (605)
++.+
T Consensus 197 ~~~~ 200 (418)
T PRK01610 197 TNLL 200 (418)
T ss_pred HHHH
Confidence 9876
No 32
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=2.7e-13 Score=117.96 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=92.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+.... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~-~~---------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----------NKVLGQVTLSDLLEIGPN-DY---------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHhhccc-cc----------------
Confidence 46788999999999999998888899999987 899999999999652100 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|..++.++.+++++.+++++|.+++.+.+||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~ 105 (111)
T cd04603 54 -----------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYE 105 (111)
T ss_pred -----------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEh
Confidence 012366788888899999999999999999999999999998 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04603 106 RELLR 110 (111)
T ss_pred HHhhc
Confidence 99975
No 33
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.48 E-value=2.2e-13 Score=138.85 Aligned_cols=132 Identities=18% Similarity=0.318 Sum_probs=109.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.+.+|+++|+++.++++++.++++.++.+.+.+++++.+||++++. ++++|+++.+|++..+....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~----------d~iiGiv~~kDll~~~~~~~--- 130 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHIEGILMAKDLLPFMRSDA--- 130 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC----------CcEEEEEEHHHHHhHhhccC---
Confidence 56679999999977799999999999999999999999999998641 68999999999975432100
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++|. ++.++++++++.++++.|++.+.+.+||+|+
T Consensus 131 -------------------------------------~~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe- 171 (292)
T PRK15094 131 -------------------------------------EAFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE- 171 (292)
T ss_pred -------------------------------------CcCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-
Confidence 0012445564 4568999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
.|.++|+||++|+++.+..+...+
T Consensus 172 ----~G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 172 ----FGGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred ----CCCEEEEeEHHHHHHHHhCCCccc
Confidence 788999999999999988765444
No 34
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=3.4e-13 Score=117.93 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=94.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
.+.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~dl~~~~~~~~~~--------------- 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----------GKLAGVLTKTDVVRQMGRCGGP--------------- 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 36788999999999999999999999999987 8999999999997644321000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 56 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~ 108 (114)
T cd04619 56 ----------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNA 108 (114)
T ss_pred ----------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEh
Confidence 0112466778889999999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04619 109 RDALK 113 (114)
T ss_pred Hhhcc
Confidence 99875
No 35
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.48 E-value=1.4e-13 Score=148.42 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=117.3
Q ss_pred cHHHHHHHhcCCCCCCCC-----CCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCC
Q 007394 386 SIYEIILELKGLPFLDAH-----PEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL 460 (605)
Q Consensus 386 ~iy~~~l~~~g~~~l~~~-----~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~ 460 (605)
.++....+..|+.+++.. ....++.++++++|.+ +++++++++++.++.+.|.+++++.+||+|++
T Consensus 59 ~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~------- 129 (479)
T PRK07807 59 RMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEE------- 129 (479)
T ss_pred HHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCC-------
Confidence 455555444444443321 2344678889999998 99999999999999999999999999999987
Q ss_pred CCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCcee
Q 007394 461 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540 (605)
Q Consensus 461 ~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v 540 (605)
++++|+|+.+|+... . ...+++++|++++.++
T Consensus 130 ----gklvGIVT~rDL~~~--~------------------------------------------~~~~V~diMt~~~itV 161 (479)
T PRK07807 130 ----GRPVGVVTEADCAGV--D------------------------------------------RFTQVRDVMSTDLVTL 161 (479)
T ss_pred ----CeEEEEEeHHHHhcC--c------------------------------------------cCCCHHHhccCCceEE
Confidence 899999999998321 0 0024778899999999
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 541 ~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++++++.+++++|.+++.+++||+|+ +++++|+||++||++.....
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~-----~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDA-----DGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhCC
Confidence 99999999999999999999999998 78999999999999976643
No 36
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=6.6e-13 Score=113.02 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=83.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
.++++++++++.++.+.|.+++++++||+|++ +++++|+++.+|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------~~~~~Givt~~Dl~~~~--------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----------KQQFVGMLTITDFILIL--------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----------CCEEEEEEEHHHHhhhe---------------------
Confidence 47889999999999999999999999999862 16899999999995410
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEe
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILT 580 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiIT 580 (605)
. +.++.+++++.+++++|.+++.+++||+|+ + |+++|+||
T Consensus 51 --------------------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~~giit 91 (98)
T cd04618 51 --------------------------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP-----STGTGLYILT 91 (98)
T ss_pred --------------------------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-----CCCCceEEee
Confidence 0 568999999999999999999999999997 5 89999999
Q ss_pred HHHhHH
Q 007394 581 RQDLRA 586 (605)
Q Consensus 581 r~Dll~ 586 (605)
++|+++
T Consensus 92 ~~d~~~ 97 (98)
T cd04618 92 SRRILK 97 (98)
T ss_pred hhhhhc
Confidence 999975
No 37
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.1e-12 Score=115.44 Aligned_cols=111 Identities=21% Similarity=0.175 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+.......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~Givt~~dl~~~~~~~~~---------------- 54 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----------GDLVGVVSRKDLLKASIGGAD---------------- 54 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHcCCC----------------
Confidence 56789999999999999988888999999987 899999999999775432100
Q ss_pred chhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC---CceE
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVV 576 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~---g~lv 576 (605)
....++.++|.+ ++.++++++++.+++++|.+++++.+||+|+ + ++++
T Consensus 55 ----------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-----~~~~~~l~ 107 (118)
T cd04617 55 ----------------------LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-----VDEGLEVI 107 (118)
T ss_pred ----------------------ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-----CCccceEE
Confidence 001235566764 6779999999999999999999999999997 4 6999
Q ss_pred EEEeHHHhHH
Q 007394 577 GILTRQDLRA 586 (605)
Q Consensus 577 GiITr~Dll~ 586 (605)
|+||++|+++
T Consensus 108 Gvit~~~l~~ 117 (118)
T cd04617 108 GRITKTNITK 117 (118)
T ss_pred EEEEhhheec
Confidence 9999999875
No 38
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.42 E-value=1.3e-12 Score=114.27 Aligned_cols=114 Identities=24% Similarity=0.280 Sum_probs=93.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----------GGVVGIITLPDLLRALEADEA---------------- 54 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----------CCEEEEEEHHHHHHHHhcccc----------------
Confidence 56788999999999999998888999999987 899999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....+++++|.+++.++.+++++.++++.|.+++.+.+||+|+ .+.|+++|+||+
T Consensus 55 ----------------------~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~ 109 (115)
T cd04593 55 ----------------------GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTR 109 (115)
T ss_pred ----------------------cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEh
Confidence 0012356677888999999999999999999999999999987 112799999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 110 ~di~~~ 115 (115)
T cd04593 110 ENVLLA 115 (115)
T ss_pred HHhhcC
Confidence 999863
No 39
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.3e-12 Score=115.70 Aligned_cols=122 Identities=21% Similarity=0.244 Sum_probs=97.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+...+........ .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~~~---------~--- 59 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----------RRLVGIVTQRDLLRHARPDGRRPL---------R--- 59 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----------CCEEEEEEHHHHHhhhcccccchh---------h---
Confidence 67889999999999999999888999999987 899999999999765432110000 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
... +......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 60 ---~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~ 118 (124)
T cd04600 60 ---GRL-------------RGRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQ 118 (124)
T ss_pred ---hhh-------------hcccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEh
Confidence 000 0001124577888899999999999999999999999999999997 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 119 ~di~~~ 124 (124)
T cd04600 119 TDLIAA 124 (124)
T ss_pred HHhhcC
Confidence 999863
No 40
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.41 E-value=5.6e-13 Score=144.60 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=114.8
Q ss_pred CCcHHHHHHHhcCCCCCCCC-C-Ccccc-ccccccccccC-CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCC
Q 007394 384 NPSIYEIILELKGLPFLDAH-P-EPWMR-TLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 459 (605)
Q Consensus 384 ~~~iy~~~l~~~g~~~l~~~-~-~~~l~-~~~v~diM~~~-~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~ 459 (605)
+..+.-.+++.+|+.+.+.. . ++..+ -.+|+++|... .+..++++++++.++.+.|.++++..+||+|++
T Consensus 64 gdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~------ 137 (502)
T PRK07107 64 DDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG------ 137 (502)
T ss_pred hHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC------
Confidence 55777778888888865432 1 11111 23577887531 144689999999999999999999999999972
Q ss_pred CCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc--CC
Q 007394 460 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TP 537 (605)
Q Consensus 460 ~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~ 537 (605)
+++++++|+||.+|+.... . +...+++++|++ ++
T Consensus 138 --~~~gkLvGIVT~~DLr~~~---~---------------------------------------~~~~~V~dIMt~~~~~ 173 (502)
T PRK07107 138 --TAHGKLLGIVTSRDYRISR---M---------------------------------------SLDTKVKDFMTPFEKL 173 (502)
T ss_pred --CcCCEEEEEEEcHHhhccc---c---------------------------------------CCCCCHHHHhCCCCCe
Confidence 1238999999999995310 0 001347788886 67
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 538 ~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
.++++++++.+|+++|.+++++.+||||+ +++++|+||++|+++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 88999999999999999999999999998 78999999999999854
No 41
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.41 E-value=5.4e-12 Score=133.93 Aligned_cols=175 Identities=14% Similarity=0.110 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCC
Q 007394 158 VTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN 237 (605)
Q Consensus 158 ~illgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~ 237 (605)
.+++|+++|+++.+|++++.+.++++.. .+|..+..+ +++++++.+...+|.. .+.
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----~~~~~~~~p-~~g~~i~~l~~~~~~~----------------~~~--- 57 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----HPWLLPFLP-LAGLLIGYLYQKFGKN----------------SEK--- 57 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHH-HHHHHHHHHHHHhCcc----------------cCC---
Confidence 5789999999999999999999988643 123223333 3344444333322221 010
Q ss_pred cccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 007394 238 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 317 (605)
Q Consensus 238 ~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~ 317 (605)
+.++. ++ ..+.+ ....++. ....|++.+.+++++|.|+|.+.|++++|+++|..
T Consensus 58 ---------g~~~v-----------~~-~~~~~-~~~~~~~----~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~ 111 (378)
T cd03682 58 ---------GNNLI-----------IE-EIHGP-EEGIPLR----MAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADA 111 (378)
T ss_pred ---------ChHHH-----------HH-HHHcc-CCCCchH----HHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHH
Confidence 11111 11 11111 1112222 23469999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh--cCC--cchHHHHHHHHHHHHHHhhc
Q 007394 318 LGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT--NNL--LLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 318 ~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t--g~~--~~l~p~~~a~~~a~~v~~~l 383 (605)
+++.++.. ..+...++.+||+|.+++++|+|++++++.+|++ +++ ..+.|.++++++++.+++.+
T Consensus 112 ~~~~~~~~-~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~ 180 (378)
T cd03682 112 FGRVFKLP-EEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL 180 (378)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99988431 2345678999999999999999999999999987 443 45888999999999988765
No 42
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.4e-12 Score=112.72 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++++++++++.+.|.+++++.+||+|++ ++++|+++.+|+.... .
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~------~-------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----------NKVVGIVTSKDVAGKD------P-------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----------CeEEEEecHHHHhccc------c--------------
Confidence 67889999999999999998888899999987 8999999999995310 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+++++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 52 ------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 102 (108)
T cd04596 52 ------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISR 102 (108)
T ss_pred ------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEH
Confidence 01356677788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 103 ~di~~ 107 (108)
T cd04596 103 QDVLK 107 (108)
T ss_pred HHhhc
Confidence 99975
No 43
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.1e-12 Score=110.69 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=92.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+++++.+||+|++ ++++|+++.+|+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 54 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-----------GRLVGIVTSWDISKAVARDK----------------- 54 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----------CcEEEEEeHHHHHHHHhhCc-----------------
Confidence 67789999999999999998888999999987 89999999999976432210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.++.++|.+++.+++++++++++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 55 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~ 104 (110)
T cd04605 55 -------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITS 104 (110)
T ss_pred -------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEH
Confidence 1245666778889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+.+
T Consensus 105 ~di~~ 109 (110)
T cd04605 105 EDISK 109 (110)
T ss_pred HHhhh
Confidence 99964
No 44
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.1e-12 Score=111.98 Aligned_cols=109 Identities=27% Similarity=0.312 Sum_probs=92.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+++..|+.+.+....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 53 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----------GHLVGLLTRDDLIRALAEGG----------------- 53 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----------CcEEEEeeHHHHHHHHHhcC-----------------
Confidence 56788999999999999988888999999987 89999999999976543211
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.+++++++++++++.|.+++.+.+||+|+ +++++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 105 (111)
T cd04639 54 -----------------------PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTL 105 (111)
T ss_pred -----------------------CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEH
Confidence 001356677788899999999999999999999999999997 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+.+
T Consensus 106 ~dl~~ 110 (111)
T cd04639 106 ENVGE 110 (111)
T ss_pred HHhhc
Confidence 99975
No 45
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.40 E-value=7.2e-13 Score=117.93 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=93.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|++++++.+||+|++ ++++|+++.+|+.+.+..+..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Gii~~~dl~~~~~~~~~---------------- 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----------GKILGMVTLGNLLSSLSSGKV---------------- 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHHhcc----------------
Confidence 67889999999999999999999999999987 899999999999765433110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHH---------HcCCcEEEEccccccCCC
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFR---------QVGLRHLLVVPKYEAAGV 572 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~---------~~~~~~lpVVd~~~~~~~ 572 (605)
+...+++++|++++.++.+++++.++.+++. +.+.+++||+|+ +
T Consensus 56 ----------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~ 108 (124)
T cd04608 56 ----------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----Q 108 (124)
T ss_pred ----------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-----c
Confidence 0123588899999999999999999999653 336788899987 7
Q ss_pred CceEEEEeHHHhHHH
Q 007394 573 SPVVGILTRQDLRAF 587 (605)
Q Consensus 573 g~lvGiITr~Dll~~ 587 (605)
|+++|+||++|++++
T Consensus 109 ~~~~Givt~~Dl~~~ 123 (124)
T cd04608 109 EKPIGIVTKIDLLSY 123 (124)
T ss_pred cceEEEEehhHhhhh
Confidence 999999999999875
No 46
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=2.8e-12 Score=111.93 Aligned_cols=112 Identities=13% Similarity=0.246 Sum_probs=92.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+.+.+.+||+|++. ++++|+++.+|+++.+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~----------~~~~G~v~~~dl~~~~~~~~~~~-------------- 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE----------SDAYGIVTMRDILKKVVAEGRDP-------------- 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC----------CcEEEEEehHHHHHHHHhCCCCC--------------
Confidence 678899999999999999988889999998621 58999999999987553311000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~ 108 (114)
T cd04630 58 -----------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISL 108 (114)
T ss_pred -----------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEH
Confidence 012466778788899999999999999999999999999986 889999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04630 109 TDIFL 113 (114)
T ss_pred HHhhc
Confidence 99975
No 47
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.39 E-value=2.1e-12 Score=141.09 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=117.5
Q ss_pred HhhcCCcHHHHHHHhcCCCCCCC-CCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCC
Q 007394 380 GDSFNPSIYEIILELKGLPFLDA-HPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPS 458 (605)
Q Consensus 380 ~~~l~~~iy~~~l~~~g~~~l~~-~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~ 458 (605)
-++++..+++.|+..+++..... ...+.++.++++++|.+ ++.++++++++.++.+.|.+++++.+||+|++
T Consensus 303 ~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~----- 375 (454)
T TIGR01137 303 RNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA----- 375 (454)
T ss_pred ccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----
Confidence 45556666778888877643222 12355888999999998 89999999999999999998888999999987
Q ss_pred CCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCc
Q 007394 459 GLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 538 (605)
Q Consensus 459 ~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 538 (605)
++++|+|+.+|+.+.+...... ...++.++|++++.
T Consensus 376 ------~~~~Givt~~dl~~~~~~~~~~--------------------------------------~~~~v~~im~~~~~ 411 (454)
T TIGR01137 376 ------GKVLGSVTLRELLSALFAGKAN--------------------------------------PDDAVSKVMSKKFI 411 (454)
T ss_pred ------CeEEEEEEHHHHHHHHhccCCC--------------------------------------cCCCHHHhcCCCCe
Confidence 8999999999997754321100 01246778888888
Q ss_pred eecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 539 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 539 ~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++++++++.+++++|.+++ .+||++ +++++|+||++|+++++
T Consensus 412 ~v~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 412 QIGEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred EECCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 9999999999999998754 355665 58999999999999864
No 48
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=3.1e-12 Score=108.37 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=84.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~---------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----------GKLSGIITERDLIAK---------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHhcC----------------------
Confidence 67889999999999999998888999999987 899999999999431
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+.++.+++++.+++++|.+++.+.+||+|+ +|+++|+||+
T Consensus 49 ---------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~ 90 (96)
T cd04614 49 ---------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRD 90 (96)
T ss_pred ---------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEH
Confidence 11568999999999999999999999999998 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 91 ~di~~ 95 (96)
T cd04614 91 HDLLK 95 (96)
T ss_pred HHhhc
Confidence 99986
No 49
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=3.8e-12 Score=110.86 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=92.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
...++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 55 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-----------GRLLGTVTDGDIRRALLKGLS---------------- 55 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----------CCEEEEEEcHHHHHHHhcCCC----------------
Confidence 35678999999999999998888899999987 899999999999764432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 107 (113)
T cd04607 56 -----------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATL 107 (113)
T ss_pred -----------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEh
Confidence 012356777788889999999999999999999999999997 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|++.
T Consensus 108 ~di~~ 112 (113)
T cd04607 108 DDLLS 112 (113)
T ss_pred HHhcc
Confidence 99874
No 50
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.2e-12 Score=109.58 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=93.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~--------------- 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----------GRLVGIFSERDIVRKVALRGAS--------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 56788999999999999998899999999987 8999999999997754321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 56 ----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~ 107 (113)
T cd04623 56 ----------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSI 107 (113)
T ss_pred ----------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEH
Confidence 0012466778788899999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04623 108 GDVVK 112 (113)
T ss_pred HHhhc
Confidence 99975
No 51
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.37 E-value=4.9e-12 Score=108.64 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=89.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----------g~~~Giv~~~dl~~~~~-------------------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----------GQPLGFVTRREAARASG-------------------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEeHHHHHHhcc--------------------
Confidence 56788999999999999998888899999877 89999999999964210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.++.++|.+.+.++.+++++.++++.|.+.+...+||+|+ +++++|+||+
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 100 (106)
T cd04582 51 -------------------------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQ 100 (106)
T ss_pred -------------------------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEH
Confidence 0144566677788999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 101 ~~l~~ 105 (106)
T cd04582 101 RSIAD 105 (106)
T ss_pred HHhhc
Confidence 99975
No 52
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.37 E-value=6.2e-12 Score=108.44 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++..+++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~------------------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----------NKLLGIVSLESLEQAYKE------------------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----------CcEEEEEEHHHHHHHhhc-------------------
Confidence 56788999999999999998888999999987 899999999999653211
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 53 ------------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~ 103 (109)
T cd04583 53 ------------------------AKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITR 103 (109)
T ss_pred ------------------------CCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEeh
Confidence 01355667788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 104 ~~l~~ 108 (109)
T cd04583 104 SSLVD 108 (109)
T ss_pred HHhhc
Confidence 99875
No 53
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=3.4e-12 Score=111.14 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=92.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----------GNLVGFLSEQDCLKQLLESSYHC-------------- 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----------CeEEEEeehHHHHHHhhhhhhcc--------------
Confidence 56789999999999999988888899999987 89999999999976543211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 57 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvit~ 108 (114)
T cd04629 57 ----------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------GKLVGQISR 108 (114)
T ss_pred ----------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC------CEEEEEEEH
Confidence 0012466778888889999999999999999999999999986 799999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04629 109 RDVLR 113 (114)
T ss_pred HHHhc
Confidence 99975
No 54
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=6.2e-12 Score=109.18 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=93.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+++.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~l~~~~~~~~~---------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----------ERPIGIVTERDIVRAVAAGID---------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEeeHHHHHHHHhccCC----------------
Confidence 56788999999999999998888999999987 899999999999765433110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+++++|.+++.++.+++++.++++.|.+++...+||+|+ +|+++|++|+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~ 106 (112)
T cd04624 55 -----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISI 106 (112)
T ss_pred -----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEH
Confidence 012356777788899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04624 107 RDLVR 111 (112)
T ss_pred HHhcc
Confidence 99975
No 55
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=7.9e-12 Score=110.73 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=92.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++. ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~----------~~~~Giv~~~dl~~~~~~~~~~~-------------- 57 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES----------GEVIGILSQRRLVEFLWENARSF-------------- 57 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC----------CcEEEEEEHHHHHHHHHHhHHhc--------------
Confidence 677899999999999999988889999998721 68999999999987654321000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+..+.. ........++|.+++.++.+++++.++++.|.+++.+++||+|+ +++++|+||+
T Consensus 58 ~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~ 117 (123)
T cd04627 58 PGLDPL---------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISV 117 (123)
T ss_pred cchhhh---------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeH
Confidence 000000 00012234567788899999999999999999999999999998 7899999999
Q ss_pred HHhH
Q 007394 582 QDLR 585 (605)
Q Consensus 582 ~Dll 585 (605)
+|+-
T Consensus 118 ~di~ 121 (123)
T cd04627 118 TDVR 121 (123)
T ss_pred HHhh
Confidence 9975
No 56
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=4.2e-12 Score=110.78 Aligned_cols=109 Identities=23% Similarity=0.309 Sum_probs=89.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
++.++++++++.++.+.|.+.+ .+.+||+|++ ++++|+++.+|+.+......
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~---------------- 54 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----------GRYVGIISLADLRAIPTSQW---------------- 54 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----------CcEEEEEEHHHHHHHHHhhc----------------
Confidence 6778999999999999987664 7889999987 89999999999976432100
Q ss_pred cchhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEE
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGi 578 (605)
...++.++|.+ .+.++.+++++.++++.|.+++.+++||+|+ +++++|+
T Consensus 55 ------------------------~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gv 105 (114)
T cd04801 55 ------------------------AQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGL 105 (114)
T ss_pred ------------------------cccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEE
Confidence 00235566653 3568999999999999999999999999997 7899999
Q ss_pred EeHHHhHH
Q 007394 579 LTRQDLRA 586 (605)
Q Consensus 579 ITr~Dll~ 586 (605)
||.+|+++
T Consensus 106 l~~~di~~ 113 (114)
T cd04801 106 ITEADLLR 113 (114)
T ss_pred Eeccceec
Confidence 99999875
No 57
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=6.6e-12 Score=111.79 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=93.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+...+.......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------------ 58 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----------GKLIGNISASDLKGLLLSPDDLLLY------------ 58 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----------CcEEEEEEHHHhhhhhcCcchhhcc------------
Confidence 57889999999999999998889999999987 8999999999998754321100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....... +. .......+.|.+++.++++++++.+++++|.+++.+++||+|+ +++++|+||+
T Consensus 59 ~~~~~~~-------~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~ 120 (126)
T cd04642 59 RTITFKE-------LS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITL 120 (126)
T ss_pred cchhhhh-------hh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEH
Confidence 0000000 00 0001123456678889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 121 ~dil~ 125 (126)
T cd04642 121 TDIIS 125 (126)
T ss_pred HHHhc
Confidence 99975
No 58
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=5.8e-12 Score=109.56 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=92.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++.+++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----------KRLVGIITRYDVLSYALESEE---------------- 54 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----------CCEEEEEEHHHHHHhhhhhhh----------------
Confidence 35678999999999999999888999999987 899999999999764322110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 55 ----------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~ 107 (113)
T cd04615 55 ----------------------LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTE 107 (113)
T ss_pred ----------------------hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEH
Confidence 0012356777788899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd04615 108 DDILR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 59
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.4e-12 Score=111.38 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=96.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~~------------ 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----------GKLVGLLTQRDLLRAALSSLSDNGE------------ 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----------CCEEEEEEHHHHHHHhccccccccc------------
Confidence 56789999999999999999999999999987 8999999999997754321100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+.. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 59 ---~~~--------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 116 (122)
T cd04803 59 ---ESL--------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITR 116 (122)
T ss_pred ---ccc--------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEH
Confidence 000 001124577888888999999999999999999999999999998 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
.|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04803 117 SDFLR 121 (122)
T ss_pred HHhhc
Confidence 99985
No 60
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=3.7e-12 Score=114.91 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=96.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++++|+.+....+......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----------~~~~Gvi~~~dl~~~~~~~~~~~~~------------ 59 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----------GRLVGIVSEGDLLRRAELGTERRRA------------ 59 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----------CCEEEEeeHHHHHHHhcccCcchhh------------
Confidence 67889999999999999999999999999987 8999999999997654332100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.+.+.... .++.. .........+++++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 60 ~~~~~~~~---~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~------g~~~Gvit~ 129 (135)
T cd04586 60 RWLDLLAG---AEELA-AAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG------GRLVGIVSR 129 (135)
T ss_pred hHHHHhcc---hHHHH-HHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC------CEEEEEEEh
Confidence 00000000 00000 000001124578888888999999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04586 130 ADLLR 134 (135)
T ss_pred Hhhhc
Confidence 99875
No 61
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.5e-12 Score=108.94 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=91.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----------EKLKGVVTFTDILDLDLFESF---------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----------CCEEEEEehHHhHHHHhhccc----------------
Confidence 57789999999999999998899999999987 899999999999764321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04626 55 -----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRT 105 (111)
T ss_pred -----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEh
Confidence 012356677888889999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04626 106 KDILD 110 (111)
T ss_pred HHhcc
Confidence 99874
No 62
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.35 E-value=7.4e-12 Score=136.02 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=122.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhccchhh----HHHHHHHHHHHhhhhh-ccccccccCC
Q 007394 151 HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLI-----NQKGKMHK----LLLALSVSVFTSVCQY-CLPFLADCKA 220 (605)
Q Consensus 151 ~~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~l~~~~~~-~~p~~~~~~~ 220 (605)
....+.+.+++|+++|+++.+|.+++.++++++... .....+.+ +..+++++++.+.+.. +.|+.
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a----- 103 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTA----- 103 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 345566779999999999999999999999885322 11111121 2344455565555443 33443
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCC-CCCcchhHHHHHHHHHHHHHHHHhcCCC
Q 007394 221 CDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNT-PTEFQPSSILIFFILYCILGLITFGIAV 299 (605)
Q Consensus 221 ~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~~k~~~t~~t~g~g~ 299 (605)
.|. | ..++ +...+... ...+++. .++.|++.+.+++|+|.
T Consensus 104 -----------~Gs-G-----------ip~v------------~~~l~g~~~~~~l~~r----~~~~K~i~~~l~vgsG~ 144 (466)
T cd03685 104 -----------AGS-G-----------IPEV------------KGYLNGVKIPHILRLK----TLLVKIVGVILSVSGGL 144 (466)
T ss_pred -----------CCC-C-----------HHHH------------HHHHcCcCccccchHH----HHHHHHHHHHHHHhcCC
Confidence 121 1 2222 22221111 1111222 34589999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHhh-----------c-ccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-CC--c
Q 007394 300 PSGLFLPIILMGSAYGRLLGMAMG-----------S-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NL--L 364 (605)
Q Consensus 300 ~gG~f~Psl~iGa~~G~~~g~~~~-----------~-~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~~--~ 364 (605)
|.|.+.|++.+||++|..+++... . ....+...+..+|+||.+++++++|++++++.+|.++ .+ +
T Consensus 145 s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~ 224 (466)
T cd03685 145 ALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQA 224 (466)
T ss_pred CCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchh
Confidence 999999999999999999997431 0 1123456789999999999999999999999999875 33 2
Q ss_pred chHHHHHHHHHHHHHHh
Q 007394 365 LLPITMIVLLIAKTVGD 381 (605)
Q Consensus 365 ~l~p~~~a~~~a~~v~~ 381 (605)
...+.++++++|..+++
T Consensus 225 ~~~~~l~~s~ias~va~ 241 (466)
T cd03685 225 LTWRTFFSSMIVTFTLN 241 (466)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555566655554
No 63
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=6.9e-12 Score=113.40 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=96.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++..|+++.+......... ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~--------~~~~ 62 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----------GKPVGVITYRDLAFAEFEDNERGLP--------KKSI 62 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----------CCEEEEEeHHHHHHHhhcccccccc--------hhhh
Confidence 56788999999999999999888999999987 8999999999998765432110000 0000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.+ ....+...+... .....+++++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||+
T Consensus 63 ~~---~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~ 129 (135)
T cd04621 63 KM---KRKAGQKRYRYV----KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITK 129 (135)
T ss_pred hh---hhhccccccccc----ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEH
Confidence 00 000000000000 01123578889888899999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04621 130 TDICR 134 (135)
T ss_pred HHHhh
Confidence 99986
No 64
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.34 E-value=7.7e-12 Score=108.79 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=93.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++.+.+.+... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~i~~~~~~~~~-~-------------- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----------GRLVGIFTDGDLRRALEKGLD-I-------------- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----------CCEEEEechHHHHHHHhccCc-c--------------
Confidence 56778999999999999988888899999987 899999999999875543110 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 57 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~ 108 (114)
T cd04604 57 -----------------------LTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHI 108 (114)
T ss_pred -----------------------ccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEH
Confidence 002366778888889999999999999999999999999997 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+||++
T Consensus 109 ~di~~ 113 (114)
T cd04604 109 HDLLR 113 (114)
T ss_pred HHhhc
Confidence 99975
No 65
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.34 E-value=2.1e-11 Score=129.78 Aligned_cols=174 Identities=17% Similarity=0.207 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------hhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCC
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLI---------NQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTN 232 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 232 (605)
|+++|+.+.+|.++++++++++-.. ...+++++++.+.+++++++++.++.+..
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~~----------------- 63 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLRRK----------------- 63 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 6789999999999999999986321 12234566777778888887665543211
Q ss_pred CCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHH
Q 007394 233 GRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGS 312 (605)
Q Consensus 233 g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa 312 (605)
|. | -.+ +++..+.+ ...++. -.+.|++.+.+|+|+|.+.|++.|+.++|+
T Consensus 64 g~-g-----------i~~------------v~~~~~~~--~~~~~~----~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa 113 (388)
T cd01033 64 GK-K-----------LVS------------IKQAVRGK--KRMPFW----ETIIHAVLQIVTVGLGAPLGREVAPREVGA 113 (388)
T ss_pred CC-C-----------ccc------------HHHHhcCC--CCCCHH----HHHHHHHHHHhhhhcCCCcCcccHHHHHHH
Confidence 11 0 011 11111111 112222 234699999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHHHhhc
Q 007394 313 AYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 313 ~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
++|..+++.++.. ..+...+..||++|.+++++++|++++++.+|.. .+++ .+.|+++++++++.+++.+
T Consensus 114 ~i~~~~~~~~~~~-~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 186 (388)
T cd01033 114 LLAQRFSDWLGLT-VADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL 186 (388)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988532 3456689999999999999999999999999976 4444 5889999999999998876
No 66
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=8.3e-12 Score=109.05 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=91.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.+... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~-~-------------- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----------GKYVGTISLTDILWKLKGLEN-L-------------- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----------CcEEEEEeHHHHHHHhhccCc-h--------------
Confidence 67889999999999999998888999999987 899999999999775432110 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++ ...++.++|.+.+.++++++++.++++.|.+.+ .+||+|+ +++++|+||+
T Consensus 56 ~~~~~------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~ 110 (116)
T cd04643 56 DLERL------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITR 110 (116)
T ss_pred hHHHH------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEH
Confidence 00000 012466778888999999999999999998754 5999998 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 111 ~dil~~ 116 (116)
T cd04643 111 REILKA 116 (116)
T ss_pred HHhhcC
Confidence 999863
No 67
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.33 E-value=4.3e-12 Score=137.55 Aligned_cols=126 Identities=18% Similarity=0.233 Sum_probs=105.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhc-----CCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~-----~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+.+++++|++ ++++++++++++++.+.+++ ++...+||+|++ ++++|+++.+|++.. +
T Consensus 128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----------~~l~GvV~l~dLl~a--~ 192 (449)
T TIGR00400 128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----------KHLKGVLSIRDLILA--K 192 (449)
T ss_pred CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----------CeEEEEEEHHHHhcC--C
Confidence 345689999998 99999999999999999975 334578888887 899999999998531 0
Q ss_pred chhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEE
Q 007394 483 KWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLL 562 (605)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lp 562 (605)
. ..+++++|++++.+++++++++++.+.|++++...+|
T Consensus 193 ----~--------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lp 230 (449)
T TIGR00400 193 ----P--------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVP 230 (449)
T ss_pred ----C--------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEe
Confidence 0 0236778888889999999999999999999999999
Q ss_pred EccccccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 563 VVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 563 VVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
|||+ +|+++|+||.+|+++.+.++..++
T Consensus 231 VVD~-----~g~lvGiIt~~Dil~~l~~~~~ed 258 (449)
T TIGR00400 231 VVDN-----EGRLVGIVTVDDIIDVIQSEATED 258 (449)
T ss_pred EEcC-----CCeEEEEEEHHHHHHHHHhhhHHH
Confidence 9998 799999999999999887755433
No 68
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1e-11 Score=108.50 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=88.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
++.++++++++.++.+.|.+++ ...+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~-------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK------------GRLLGIFTERDIVRLTAIGKDL-------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC------------CcEEEEEeHHHHHHHHhcCCCc--------------
Confidence 5677899999999999998777 566777764 7999999999997654321100
Q ss_pred cchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCC--CCHHHHHHHHHHcCCcEEEEccccccCCCCceEEE
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES--MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~--~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGi 578 (605)
...++.++|.+++.++.++ +++.++++.|.+++.+.+||+|+ +|+++|+
T Consensus 56 ------------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gv 106 (115)
T cd04620 56 ------------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGL 106 (115)
T ss_pred ------------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEE
Confidence 0123566777778888887 78999999999999999999998 7999999
Q ss_pred EeHHHhHH
Q 007394 579 LTRQDLRA 586 (605)
Q Consensus 579 ITr~Dll~ 586 (605)
||++|+++
T Consensus 107 it~~dl~~ 114 (115)
T cd04620 107 VTAESIRQ 114 (115)
T ss_pred EEhHHhhc
Confidence 99999986
No 69
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=7.3e-12 Score=110.51 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=94.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|++ ++++|++++.|+++.......... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~~~~~-----~-~----- 59 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----------GELIGIITRRDIIRAGSVRTSVED-----Q-Q----- 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEcHHHHhhccccccccc-----h-h-----
Confidence 67789999999999999998888999999987 899999999999753211000000 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 60 ~~------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~ 116 (122)
T cd04635 60 RT------------------QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDR 116 (122)
T ss_pred hh------------------hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEh
Confidence 00 000123466778888899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04635 117 HDVLK 121 (122)
T ss_pred HHhhc
Confidence 99986
No 70
>PRK11573 hypothetical protein; Provisional
Probab=99.33 E-value=1.5e-11 Score=131.34 Aligned_cols=134 Identities=13% Similarity=0.199 Sum_probs=110.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++.+|+|+|+|+.++++++.+++++++.+.+.+++|+.+||.+++. +.++|++..+|++..+.++.
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~----------D~IiGiv~~kDll~~~~~~~--- 250 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL----------DDAISMLRVREAYRLMTEKK--- 250 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC----------CceEEEEEHHHHHHHhhccC---
Confidence 66789999999999999999999999999999999999999997642 78999999999976432210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
..... ++.+++ +++.+|++++++.++++.|++++.+...|+|+
T Consensus 251 ------------~~~~~-----------------------~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE- 293 (413)
T PRK11573 251 ------------EFTKE-----------------------NMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE- 293 (413)
T ss_pred ------------cCCHH-----------------------HHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-
Confidence 00000 122332 57889999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
.|...|+||.+|+++....+...+
T Consensus 294 ----yG~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 294 ----YGDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred ----CCCeEEEeeHHHHHHHHhCCCCcc
Confidence 899999999999999988766544
No 71
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.33 E-value=5.4e-12 Score=136.11 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=104.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
++.+++.++|.+ +++++++++++.++.+.|.+++++.+||+|+ ++++|+|+.+|+... .
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------------gklvGIVT~rDL~~~----~--- 143 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE------------DRPVGLVTDSDLLGV----D--- 143 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------------CEEEEEEEHHHhhcC----C---
Confidence 567788899998 8899999999999999999988888888875 689999999998321 0
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++|++++.++++++++.+++++|.+++.+++||+|+
T Consensus 144 -------------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~- 185 (475)
T TIGR01303 144 -------------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA- 185 (475)
T ss_pred -------------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-
Confidence 012477889999999999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++||++.....
T Consensus 186 ----~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 186 ----DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred ----CCeEEEEEEHHHHHHHHhCC
Confidence 78999999999999976654
No 72
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.3e-11 Score=110.09 Aligned_cols=126 Identities=24% Similarity=0.267 Sum_probs=94.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+...+.......... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~~~~~~~~~~~~~---------~~ 61 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----------GKLTGIVTRHDIVDFVVRDRDKARTG---------DR 61 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----------CcEEEEEEHHHHHHHHhhhhhhcchh---------hh
Confidence 56788999999999999999999999999987 89999999999987543211000000 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.. + .......+++++|++++.++++++++.++++.|.+.+.+.+||+++ .++++++|+||+
T Consensus 62 ~~-~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~---~~~~~~~Gvit~ 122 (128)
T cd04632 62 SG-E---------------KERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP---DDDTKVVGILTK 122 (128)
T ss_pred hh-h---------------hhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc---CCCCcEEEEEEh
Confidence 00 0 0000113467888888999999999999999999999999999842 115899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 123 ~di~~ 127 (128)
T cd04632 123 KDVLR 127 (128)
T ss_pred Hhhhc
Confidence 99986
No 73
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=9.9e-12 Score=111.64 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=96.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++..|+.+.+.+........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~i~~~~l~~~~~~~~~~~~~~----------- 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----------GRVVGIVSEGDLIRKIYKGKGLFYVT----------- 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----------CCEEEEEeHHHHHHHHhccCCccccc-----------
Confidence 56789999999999999998888999999987 89999999999987654321000000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+ .. ..+ + .........++.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+||+
T Consensus 60 ~~~~-~~----~~~-~-~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~ 126 (132)
T cd04636 60 LLYS-VI----FLD-E-SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISR 126 (132)
T ss_pred cccc-cc----ccc-h-HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEH
Confidence 0000 00 000 0 000001123677889899999999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 127 ~dl~~ 131 (132)
T cd04636 127 GDIIR 131 (132)
T ss_pred HHhhc
Confidence 99986
No 74
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.32 E-value=1e-11 Score=135.16 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=98.2
Q ss_pred cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHH
Q 007394 417 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE 496 (605)
Q Consensus 417 M~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~ 496 (605)
|.+ +++++++++++.++.+.|.+++++.+||+|++ +.+++++|+|+.+|+.... .
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--------~~~GklvGIVT~~DL~~v~-~-------------- 160 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETG--------TMGSKLLGYVTKRDWDFVN-D-------------- 160 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--------CcCCeEEEEEEHHHHhhcc-c--------------
Confidence 667 88999999999999999999999999999872 1127999999999995321 0
Q ss_pred HhhhcchhHhhhhcCcccccccChhhhhhhcccccccccC--CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCc
Q 007394 497 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 574 (605)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~ 574 (605)
...+++++|+++ ..++++++++++++++|.+++.+.+||||+ +++
T Consensus 161 ----------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~ 207 (505)
T PLN02274 161 ----------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGE 207 (505)
T ss_pred ----------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCe
Confidence 013477788766 679999999999999999999999999998 789
Q ss_pred eEEEEeHHHhHHHHhh
Q 007394 575 VVGILTRQDLRAFNIL 590 (605)
Q Consensus 575 lvGiITr~Dll~~~~~ 590 (605)
++|+||++|+++....
T Consensus 208 LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 208 LVDLVTRTDVKRVKGY 223 (505)
T ss_pred EEEEEEHHHHHHHhhC
Confidence 9999999999998764
No 75
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.32 E-value=1.3e-11 Score=107.24 Aligned_cols=112 Identities=23% Similarity=0.360 Sum_probs=93.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~---------------- 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----------GRLVGIVSLDDIREILFDPSL---------------- 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----------CCEEEEEEHHHHHHHHhcccc----------------
Confidence 67789999999999999998888999999987 899999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|++++.++++++++.++++.|.+.+.+.+||+|+ . +++++|++|+
T Consensus 55 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~-~~~~~Gvvt~ 108 (114)
T cd04613 55 ----------------------YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD---D-PGKLLGILSR 108 (114)
T ss_pred ----------------------cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC---C-CCEEEEEEEh
Confidence 0013467788889999999999999999999999999999974 1 3789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04613 109 SDLLS 113 (114)
T ss_pred HHhhc
Confidence 99975
No 76
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=1.7e-11 Score=106.06 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=91.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+.+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~dl~~~~~~~~----------------- 53 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG------------GRVVGIISRRDVEKALRHGL----------------- 53 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6788999999999999999888889999987 68999999999976432210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvvt~ 104 (110)
T cd04595 54 -----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED------GRLVGIVTR 104 (110)
T ss_pred -----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC------CEEEEEEEh
Confidence 012466778888999999999999999999999999999986 799999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 105 ~di~~ 109 (110)
T cd04595 105 TDLLR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 77
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.32 E-value=1.3e-11 Score=107.69 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=88.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+. +++++++|+++.+|+... .. .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~~~~G~v~~~dl~~~-~~-~----------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--------KSGGKLLGIVTSRDIDFL-TD-S----------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--------CcCCEEEEEEEhHHhhhh-hc-c-----------------
Confidence 56788999999999999988888899999971 112899999999998531 00 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecC--CCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEE
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE--SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL 579 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~--~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiI 579 (605)
..+++++|.+.+.++.+ ++++.++++.|.+++.+.+||+|+ +++++|+|
T Consensus 56 ------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvi 106 (114)
T cd04602 56 ------------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALV 106 (114)
T ss_pred ------------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEE
Confidence 01356777777777766 999999999999999999999998 78999999
Q ss_pred eHHHhHH
Q 007394 580 TRQDLRA 586 (605)
Q Consensus 580 Tr~Dll~ 586 (605)
|++|+++
T Consensus 107 t~~di~~ 113 (114)
T cd04602 107 TRSDLKK 113 (114)
T ss_pred EHHHhhc
Confidence 9999875
No 78
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.31 E-value=2.1e-11 Score=105.44 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=91.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~~l~~~~~~~~----------------- 52 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD------------GKLVGIVTLSDIAHAIARGL----------------- 52 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6778999999999999999888899999987 69999999999976533211
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 53 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 104 (110)
T cd04588 53 -----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITR 104 (110)
T ss_pred -----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEh
Confidence 002355667788889999999999999999999999999987 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 105 ~dl~~ 109 (110)
T cd04588 105 TDILR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 79
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.1e-11 Score=105.83 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=88.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++...++|.+ + ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-----------~~~~G~v~~~dl~~~~~~~~~~--------------- 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-----------GELVGLLTFREVLQAMAQHGAG--------------- 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-----------CEEEEEEEHHHHHHHHHhcCCc---------------
Confidence 677899999999999999877776666654 4 7999999999997654321000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....+++++|++.+.++.+++++++++++|.+++.+.+||+|+ ++++|+||+
T Consensus 55 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~ 106 (112)
T cd04625 55 ----------------------VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISF 106 (112)
T ss_pred ----------------------hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEH
Confidence 0012466778788889999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04625 107 HDVAK 111 (112)
T ss_pred HHhhc
Confidence 99986
No 80
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.31 E-value=1.6e-11 Score=106.65 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+...+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------------NKLVGIFTSKDIALRVVAQGLDP-------------- 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHHhcCCCc--------------
Confidence 5678899999999999998888889999986 69999999999964332211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|++++.++++++++.++++.|.+++.+++||+|+ +++++|+||+
T Consensus 56 -----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~ 107 (113)
T cd04587 56 -----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDV 107 (113)
T ss_pred -----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEH
Confidence 012466778888899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|++.
T Consensus 108 ~dl~~ 112 (113)
T cd04587 108 TKLTH 112 (113)
T ss_pred HHhcc
Confidence 99975
No 81
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.9e-11 Score=108.28 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=95.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+.+++.+||+|++. ++++|+++.+|+.+.+.+....... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~----------~~~~G~v~~~dl~~~~~~~~~~~~~---------~~- 61 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT----------GKLVGIITATDILKYLGGGEKFNKI---------KT- 61 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC----------CEEEEEEEHHHHHHHhhccchhccc---------cc-
Confidence 577889999999999999988888999998731 6999999999998765432100000 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
. . . ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 62 -----~------~----~--~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~ 119 (125)
T cd04631 62 -----G------N----G--LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTE 119 (125)
T ss_pred -----c------c----c--chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEH
Confidence 0 0 0 000123567778888999999999999999999999999999997 6899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 120 ~di~~~ 125 (125)
T cd04631 120 RDLLKA 125 (125)
T ss_pred HHhhcC
Confidence 999863
No 82
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.31 E-value=1.9e-11 Score=105.93 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=91.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++++++++++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------------GRLVGIVTDRDLRNRVVAEGLD--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHhccCCC---------------
Confidence 6778999999999999998888889999987 6999999999997643321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~ 105 (111)
T cd04800 55 -----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISA 105 (111)
T ss_pred -----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEH
Confidence 012466777788999999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04800 106 TDLLR 110 (111)
T ss_pred HHhhc
Confidence 99975
No 83
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=2.5e-11 Score=105.49 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=91.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++..|++..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~i~~~~l~~~~~~~~~~~-------------- 55 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------------DRLVGIVTDRDIVVRAVAEGRDP-------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEhHHHHHHHhhccCCc--------------
Confidence 6788999999999999999988999999987 69999999999863211100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+++++|.+.+.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 107 (113)
T cd04622 56 -----------------------DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSL 107 (113)
T ss_pred -----------------------ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEH
Confidence 012366778888999999999999999999999999999987 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04622 108 GDLAR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 84
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.30 E-value=2.1e-11 Score=105.03 Aligned_cols=99 Identities=45% Similarity=0.712 Sum_probs=86.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecC---CCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDE---GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVR 498 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~---~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~ 498 (605)
....+++++++.++.+.+.+.+++.+||+|+ + ++++|+++.+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-----------~~~~G~v~~~dl~~~~~----------------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES-----------PRLVGYILRSQLVVALK----------------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC-----------CEEEEEEeHHHHHHHHH-----------------
Confidence 5778899999999999999988889999988 5 89999999999954311
Q ss_pred hhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEE
Q 007394 499 EKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578 (605)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGi 578 (605)
++|.+++.++++++++.++++.|.+++.+.+||+++ |+++|+
T Consensus 55 --------------------------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gv 96 (105)
T cd04591 55 --------------------------------NYIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGI 96 (105)
T ss_pred --------------------------------HhccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEE
Confidence 045677889999999999999999999999999964 899999
Q ss_pred EeHHHhHH
Q 007394 579 LTRQDLRA 586 (605)
Q Consensus 579 ITr~Dll~ 586 (605)
||++|+++
T Consensus 97 vt~~dl~~ 104 (105)
T cd04591 97 ITRKDLLK 104 (105)
T ss_pred EEhhhhhc
Confidence 99999976
No 85
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=1.5e-11 Score=109.60 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=88.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+.+....+......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------------ 58 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----------DNFIGVITAVDLLGEEPIKRIQEGG------------ 58 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHhhChhhHHHHHcC------------
Confidence 46788999999999999988888899999987 8999999999997521100000000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCcee------cCCCCHHHHHHHHHHcCCcEEEEccccccCCC-Cc
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV------IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SP 574 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v------~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~ 574 (605)
......+++++|++++.++ .+++++.++++.|.+++.+.+||+|+ + |+
T Consensus 59 --------------------~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-----~~~~ 113 (126)
T cd04640 59 --------------------ISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-----EHHQ 113 (126)
T ss_pred --------------------CCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-----CCCE
Confidence 0000123667776655433 37899999999999999999999998 5 78
Q ss_pred eEEEEeHHHhHH
Q 007394 575 VVGILTRQDLRA 586 (605)
Q Consensus 575 lvGiITr~Dll~ 586 (605)
++|+||++|+++
T Consensus 114 ~~G~it~~di~~ 125 (126)
T cd04640 114 IRGIISTSDIAR 125 (126)
T ss_pred EEEEEeHHHHhh
Confidence 999999999986
No 86
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.29 E-value=3.2e-11 Score=104.31 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=92.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------------GRPLGIVTERDILRLLASGPD---------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEeHHHHHHHHhcCCC----------------
Confidence 5678899999999999999888889999986 699999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 105 (111)
T cd04611 54 -----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQ 105 (111)
T ss_pred -----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEh
Confidence 012466777788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04611 106 TDLLQ 110 (111)
T ss_pred HHhhc
Confidence 99975
No 87
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.28 E-value=3.5e-11 Score=104.09 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=91.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+...+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~---------------- 53 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD------------GRLVGIVTLADIRRVPAEGRE---------------- 53 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------------CeEEEEEEHHHHHHHHhcCcc----------------
Confidence 6778999999999999999888889999987 689999999999764322100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||.
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 105 (111)
T cd04612 54 -----------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSR 105 (111)
T ss_pred -----------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEH
Confidence 002355667788899999999999999999999999999987 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04612 106 SDLLR 110 (111)
T ss_pred HHhhh
Confidence 99975
No 88
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.28 E-value=1.2e-11 Score=138.10 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=115.1
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh--hh
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL--QE 488 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~--~~ 488 (605)
.+++|+|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.+..-. ..
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~l~Givt~~di~~~~~~~~~~~~~~ 134 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----------GKLLGLVSLSDLARAYMDILDPEILS 134 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence 689999998 99999999999999999999999999999987 8999999999999876653210 00
Q ss_pred cccchhHHHhh------------------hc-----chhHh---hhhc--------------------C-----------
Q 007394 489 KRRTEEWEVRE------------------KF-----SWVEL---AERE--------------------G----------- 511 (605)
Q Consensus 489 ~~~~~~~~~~~------------------~~-----~~~~~---~~~~--------------------~----------- 511 (605)
.....-.++.+ .+ ....+ +.+. .
T Consensus 135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCC
Confidence 00000000000 00 00000 0000 0
Q ss_pred ----------------cccccccChhhhhhhcccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCc
Q 007394 512 ----------------KIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 574 (605)
Q Consensus 512 ----------------~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~ 574 (605)
+..+...+........+++++|+ +++.+++++++++++.+.|.+++.+++||+|+ +|+
T Consensus 215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~ 289 (546)
T PRK14869 215 EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGK 289 (546)
T ss_pred HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCC
Confidence 00111112222345578899999 89999999999999999999999999999998 799
Q ss_pred eEEEEeHHHhHHHHh
Q 007394 575 VVGILTRQDLRAFNI 589 (605)
Q Consensus 575 lvGiITr~Dll~~~~ 589 (605)
++|+||++|+++...
T Consensus 290 lvGiit~~dl~~~~~ 304 (546)
T PRK14869 290 VVGVISRYHLLSPVR 304 (546)
T ss_pred EEEEEEHHHhhcccc
Confidence 999999999998654
No 89
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.28 E-value=1.5e-11 Score=133.84 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=101.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
++++.|.+ +++++++++++.++.+.|.+++++.+||+|++ ..+++++|+|+.+|+... + .
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--------~~~gkLvGIVt~~DL~~~--~-~------- 156 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDG--------KVGGKLLGIVTSRDIDFV--K-D------- 156 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--------ccCCeEEEEEEHHHHhhc--c-c-------
Confidence 35667877 88999999999999999999999999999873 123799999999999521 0 0
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|++ ++.++++++++.|++++|.+++.+.+||+|+
T Consensus 157 ---------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~--- 200 (495)
T PTZ00314 157 ---------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND--- 200 (495)
T ss_pred ---------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---
Confidence 01347788877 7889999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHh
Q 007394 570 AGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~ 589 (605)
+++++|+||++|+++...
T Consensus 201 --~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 201 --NGELVALVSRSDLKKNRG 218 (495)
T ss_pred --CCcEEEEEEehHhhhccc
Confidence 899999999999998754
No 90
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.28 E-value=3.6e-11 Score=104.23 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=90.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++++++++++++++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------------DPRLGIVTRTDLLDAVLLDGL---------------- 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------------CeEEEEEEHHHHHHHHHcCCC----------------
Confidence 4678899999999999998888888999887 589999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++..+++++++.++++.|.+++.+.+||+|+ ++++|+||+
T Consensus 54 ----------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04589 54 ----------------------PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQ 105 (111)
T ss_pred ----------------------CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEh
Confidence 0012466778788889999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~dl~~ 110 (111)
T cd04589 106 TDLLS 110 (111)
T ss_pred HHhhc
Confidence 99975
No 91
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.28 E-value=1.9e-11 Score=132.26 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=102.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+.++.|.+ +++++++++++.++.+.|.+++++.+||+|++ .++++++|+|+.+|+.... .
T Consensus 80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--------~~~~~lvGIVt~rDL~~~~-~-------- 140 (450)
T TIGR01302 80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDG--------DMTGKLVGIITKRDIRFVK-D-------- 140 (450)
T ss_pred ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--------CCCCeEEEEEEHHHHhhhh-c--------
Confidence 456788888 89999999999999999999999999999874 1124899999999995321 0
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|+ +++.++++++++.++++.|.+++.+.+||+|+
T Consensus 141 ----------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe--- 183 (450)
T TIGR01302 141 ----------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK--- 183 (450)
T ss_pred ----------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---
Confidence 0124677787 48899999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHh
Q 007394 570 AGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 184 --~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 184 --NGELVGLITMKDIVKRRK 201 (450)
T ss_pred --CCcEEEEEEhHHhhhccc
Confidence 899999999999998753
No 92
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.6e-11 Score=106.16 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=94.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.+.. .... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~-~~~~----~-~----- 58 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------------NELVGVISDRDYLKAISPFL-GTAG----E-T----- 58 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------------CeEEEEEEHHHHHHHHHHHh-cccc----c-h-----
Confidence 5778999999999999999888899999986 79999999999987554210 0000 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+. .....+++++|.+++.++++++++.++++.|.+++.+.+||+|+ +++++|++|+
T Consensus 59 -~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~ 116 (122)
T cd04637 59 -EKDL----------------ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITW 116 (122)
T ss_pred -HHHH----------------HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEH
Confidence 0000 00112467788889999999999999999999999999999988 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 117 ~dll~~ 122 (122)
T cd04637 117 KDLLKY 122 (122)
T ss_pred HHhhhC
Confidence 999863
No 93
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.28 E-value=3.8e-11 Score=105.54 Aligned_cols=120 Identities=25% Similarity=0.285 Sum_probs=94.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+...........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~i~~~~l~~~~~~~~~~~-------------- 55 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------------GKLVGIVTDRDLKLASPSKATTL-------------- 55 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------------CeEEEEEeHHHHHHhhhcccccc--------------
Confidence 5678899999999999999888899999987 69999999999976543211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+.. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 56 ~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~ 116 (122)
T cd04585 56 DIWELY--------------YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITE 116 (122)
T ss_pred cchhhh--------------hhhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEH
Confidence 000000 000123577888889999999999999999999999999999997 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 117 ~di~~ 121 (122)
T cd04585 117 SDLFR 121 (122)
T ss_pred HHhhh
Confidence 99986
No 94
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.27 E-value=4.6e-11 Score=104.41 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=96.1
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchh
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE 494 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~ 494 (605)
++|.+ +++++.++.++.++...|.+++...+||+++ ++++|+++.+|+.+.+......
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------------~~l~Giit~~di~~~~~~~~~~-------- 60 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD------------GKLVGIITERDILRALAAGGKR-------- 60 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccCCc--------
Confidence 44556 8899999999999999999999999999987 4899999999998865442100
Q ss_pred HHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHH-cCCcEEEEccccccCCCC
Q 007394 495 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ-VGLRHLLVVPKYEAAGVS 573 (605)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~-~~~~~lpVVd~~~~~~~g 573 (605)
..++.++|++++.++.+++++.++.+.|.+ ++.+++||+|+ ++
T Consensus 61 -------------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~ 104 (117)
T COG0517 61 -------------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DG 104 (117)
T ss_pred -------------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CC
Confidence 003677888889999999999999999999 79999999998 65
Q ss_pred -ceEEEEeHHHhH
Q 007394 574 -PVVGILTRQDLR 585 (605)
Q Consensus 574 -~lvGiITr~Dll 585 (605)
+++|++|++|++
T Consensus 105 ~~lvGivt~~di~ 117 (117)
T COG0517 105 GKLVGIITLSDIL 117 (117)
T ss_pred CeEEEEEEHHHcC
Confidence 999999999974
No 95
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.27 E-value=4.8e-11 Score=103.35 Aligned_cols=109 Identities=22% Similarity=0.363 Sum_probs=89.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|++. ++++|+++..|+.+...+.. .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~----------~~~~G~v~~~~l~~~~~~~~-~--------------- 55 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL----------DNIIGVVHVKDLLRALAEGE-E--------------- 55 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC----------ceEEEEEEHHHHHHHHHcCC-C---------------
Confidence 678899999999999999988889999998631 68999999999977543211 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++| +++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 56 ------------------------~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 105 (111)
T cd04590 56 ------------------------DLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTL 105 (111)
T ss_pred ------------------------cCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEH
Confidence 01233344 45678999999999999999999999999998 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04590 106 EDILE 110 (111)
T ss_pred HHhhc
Confidence 99975
No 96
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.27 E-value=1.4e-11 Score=124.89 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=98.1
Q ss_pred ccccccccccCCC-eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 410 TLTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 410 ~~~v~diM~~~~~-v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
.++|+|+|.+ + +.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+....
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----------g~~~Givt~~dl~~~~~~~~---- 216 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----------NQLVGVFTDGDLRRALLGGG---- 216 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----------CCEEEEEEcHHHHHHHhcCC----
Confidence 4789999988 7 8899999999999999998888999999987 89999999999976432210
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
+...+++++|.+++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 217 -----------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 259 (268)
T TIGR00393 217 -----------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD-- 259 (268)
T ss_pred -----------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC--
Confidence 0013467888888999999999999999999999999999998
Q ss_pred cCCCCceEEEEe
Q 007394 569 AAGVSPVVGILT 580 (605)
Q Consensus 569 ~~~~g~lvGiIT 580 (605)
+|+++|+|+
T Consensus 260 ---~g~l~GvI~ 268 (268)
T TIGR00393 260 ---HNKVLGVLH 268 (268)
T ss_pred ---CCeEEEEEC
Confidence 789999985
No 97
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.27 E-value=2.2e-11 Score=105.20 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=88.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~---~----------------- 51 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-----------GKLVGIVTNRDLRFET---D----------------- 51 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CEEEEEEEhhHeeecc---c-----------------
Confidence 67788999999999999998888999999987 8999999999884210 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecC-CCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEe
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE-SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 580 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~-~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiIT 580 (605)
...++.++|.+.+.++.+ ++++.++++.|.+.+.+.+||+|+ +++++|+||
T Consensus 52 -----------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~ 103 (110)
T cd04601 52 -----------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLIT 103 (110)
T ss_pred -----------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEE
Confidence 002355667666666677 999999999999999999999997 789999999
Q ss_pred HHHhHH
Q 007394 581 RQDLRA 586 (605)
Q Consensus 581 r~Dll~ 586 (605)
++|+++
T Consensus 104 ~~dil~ 109 (110)
T cd04601 104 VKDIEK 109 (110)
T ss_pred hhhhhc
Confidence 999975
No 98
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=4.6e-11 Score=103.66 Aligned_cols=110 Identities=22% Similarity=0.279 Sum_probs=91.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------------EKPVGIITERDLVKKVVSRNLKP-------------- 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------------CEEEEEEEHHHHHHHHhhccCCc--------------
Confidence 5678899999999999999888899999986 58999999999977543211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|+ + +++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~-~~~Gvi~~ 106 (112)
T cd04802 56 -----------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-----D-ELVGIVTT 106 (112)
T ss_pred -----------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----C-EEEEEEEh
Confidence 012466777788889999999999999999999999999997 4 89999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 107 ~di~~ 111 (112)
T cd04802 107 TDIVM 111 (112)
T ss_pred hhhhc
Confidence 99875
No 99
>PRK03655 putative ion channel protein; Provisional
Probab=99.26 E-value=2.3e-10 Score=122.15 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=124.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h------hccchhhHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 007394 152 VMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLI-N------QKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPS 224 (605)
Q Consensus 152 ~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 224 (605)
..-+...+++|+++|+.+.+|.+++.+.++++-.. . ...+++.+..+.++|++++.+..+.|.-
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~--------- 80 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGH--------- 80 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCC---------
Confidence 34567789999999999999999999999876321 1 1223445555667788877765433311
Q ss_pred CCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccch
Q 007394 225 FPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLF 304 (605)
Q Consensus 225 ~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f 304 (605)
+ | .+...... .. ..+.. .....|++.+.+++++|.+.|++
T Consensus 81 --------~--G----------~~~~~~~~-------------~~---~~~~~----~~~~~~~~~~~l~l~~G~S~GrE 120 (414)
T PRK03655 81 --------A--G----------PDPATEPL-------------IG---APVPP----SALPGLLLALILGLAGGVSLGPE 120 (414)
T ss_pred --------C--C----------ChHHHHHH-------------hc---CCCCc----cHHHHHHHHHHHHHhcCCCCCch
Confidence 1 1 11101111 00 11121 12457889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHH-hcCCc------chHHHHHHHHHHH
Q 007394 305 LPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL-TNNLL------LLPITMIVLLIAK 377 (605)
Q Consensus 305 ~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~-tg~~~------~l~p~~~a~~~a~ 377 (605)
.|++++||++|..+++.+.. ..+.....++|++|.+++++|+|++++++.+|. .+++. .++|+ +++.++.
T Consensus 121 GP~VqiGa~igs~~~r~~~~--~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~ 197 (414)
T PRK03655 121 HPIMTVNIALAVAIGARLLP--RVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGA 197 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999987732 234555788999999999999999999999996 46554 25554 4555677
Q ss_pred HHHhhc
Q 007394 378 TVGDSF 383 (605)
Q Consensus 378 ~v~~~l 383 (605)
.++..+
T Consensus 198 ~v~~~~ 203 (414)
T PRK03655 198 LTTGLF 203 (414)
T ss_pred HHHHHh
Confidence 666554
No 100
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.26 E-value=2.9e-11 Score=132.18 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=102.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
+++++|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.... .
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----------g~lvGiVt~~DL~~~~---~------- 144 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDEN-----------GKLVGIITNRDVRFET---D------- 144 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----------CEEEEEEEHHHhhhcc---c-------
Confidence 46788988 99999999999999999999999999999987 8999999999994310 0
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
...+++++|+ +++.++++++++.++++.|.+++.+.+||+|+
T Consensus 145 ---------------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---- 187 (486)
T PRK05567 145 ---------------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---- 187 (486)
T ss_pred ---------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----
Confidence 0124667787 68889999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHh
Q 007394 571 GVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 188 -~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 188 -NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -CCcEEEEEEhHHhhhhhh
Confidence 899999999999998753
No 101
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=3.3e-11 Score=103.19 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=88.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~Giv~~~~l~~~~~-------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED------------GKLVGIITSRDVRRAHP-------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEehHHhhcccc--------------------
Confidence 5677899999999999999888889999984 79999999999954210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+||+
T Consensus 50 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 99 (105)
T cd04599 50 ------------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITK 99 (105)
T ss_pred ------------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEH
Confidence 01255667788899999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|++.
T Consensus 100 ~~l~~ 104 (105)
T cd04599 100 GTIAL 104 (105)
T ss_pred HHhcc
Confidence 99873
No 102
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-11 Score=129.44 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=110.0
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+...++.++++. +.+++++..++.++.+.|.+++.+.+.++|++ +.+.||||++|+.........
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----------~~~~GIvT~~dl~~~v~~~g~-- 210 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----------GPLLGIVTRKDLRSRVIADGR-- 210 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------CCccceeehHHHHHHHHhcCC--
Confidence 445678999999 99999999999999999999999988899887 899999999999765443211
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
+...+++++|+.++.++.+++.+.||+-+|.+++++|+||+++
T Consensus 211 ------------------------------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~- 253 (610)
T COG2905 211 ------------------------------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED- 253 (610)
T ss_pred ------------------------------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC-
Confidence 1224689999999999999999999999999999999999986
Q ss_pred ccCCCCceEEEEeHHHhHHHHhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
|+++|+||.+||++....
T Consensus 254 -----gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 254 -----GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred -----CeeeEEeeHHHHHHhhCC
Confidence 999999999999987663
No 103
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.25 E-value=5e-11 Score=102.25 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=85.9
Q ss_pred eEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcch
Q 007394 424 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSW 503 (605)
Q Consensus 424 ~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 503 (605)
.++++++++.++.+.+.+.+...+||+|+ ++++|+++.+|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~---------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------------NKFLGAVYLKDIENATY---------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHHhhhcc----------------------
Confidence 46789999999999999888899999986 68999999999854100
Q ss_pred hHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHH
Q 007394 504 VELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 583 (605)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~D 583 (605)
.++.++|.+.+.++++++++.++++.|.+++.+.+||+|+ |+++|+||++|
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~d 100 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDS 100 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHH
Confidence 1244567788889999999999999999999999999975 89999999999
Q ss_pred hHH
Q 007394 584 LRA 586 (605)
Q Consensus 584 ll~ 586 (605)
+++
T Consensus 101 l~~ 103 (104)
T cd04594 101 ILD 103 (104)
T ss_pred hhc
Confidence 875
No 104
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=2.4e-11 Score=105.14 Aligned_cols=102 Identities=24% Similarity=0.237 Sum_probs=85.5
Q ss_pred EcCcccHHHHHHHHhcCC-----CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 426 LSGIEKVSQIVDVLRNTT-----HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 426 v~~~~tl~~a~~~l~~~~-----~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
+.+++++.++.+.|.+++ ...+||+|++ ++++|+++.+|+.+. . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~~l~~~----~--~------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----------GRLLGVVSLRDLLLA----D--P------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----------CCEEEEEEHHHHhcC----C--C-------------
Confidence 567899999999998766 3678999987 899999999988531 0 0
Q ss_pred cchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEe
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 580 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiIT 580 (605)
..+++++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit 101 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIIT 101 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEE
Confidence 01355677778889999999999999999999999999997 789999999
Q ss_pred HHHhHHH
Q 007394 581 RQDLRAF 587 (605)
Q Consensus 581 r~Dll~~ 587 (605)
++|+++.
T Consensus 102 ~~dll~~ 108 (109)
T cd04606 102 VDDVIDV 108 (109)
T ss_pred hHHhhhh
Confidence 9999875
No 105
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.24 E-value=5.3e-11 Score=128.08 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cch----hhHHHHHHHHHHHhhhh-hccccccccCCCCCCCCC
Q 007394 156 IPVTLIGIIGGILGGLYNHILHKVLRLYNLINQK---GKM----HKLLLALSVSVFTSVCQ-YCLPFLADCKACDPSFPE 227 (605)
Q Consensus 156 ~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~l~~~~~-~~~p~~~~~~~~~~~~~~ 227 (605)
...+++|++.|+++.+|..+.++..+++..+-.. ..+ ..++.+++++++.+.+. ++.|..
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a------------ 70 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQA------------ 70 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------------
Confidence 4567899999999999999999998887644221 111 12344555555555444 344543
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCC-CCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhH
Q 007394 228 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSN-TPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLP 306 (605)
Q Consensus 228 ~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P 306 (605)
.| +| -.++ +...+.. ..+.+++. -++.|++.+.+++|+|.+-|++.|
T Consensus 71 ----~G-sG-----------Ip~v------------~~~l~g~~~~~~l~~r----~~~~k~i~~~l~i~sG~svGrEGP 118 (426)
T cd03683 71 ----VG-SG-----------IPEM------------KTILRGVVLPEYLTFK----TLVAKVIGLTCALGSGLPLGKEGP 118 (426)
T ss_pred ----CC-CC-----------HHHH------------HHHHcCCCccccccHH----HHHHHHHHHHHHHhcCCCCCCCCc
Confidence 11 11 1111 1111110 01112222 345799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-----cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHH
Q 007394 307 IILMGSAYGRLLGMAMGSY-----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKT 378 (605)
Q Consensus 307 sl~iGa~~G~~~g~~~~~~-----~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~ 378 (605)
+.++||++|..++++.... ...+...+..+|++|.++++.++|++++++.+|.. .+++ .+.|.+++++++..
T Consensus 119 ~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~ 198 (426)
T cd03683 119 FVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAF 198 (426)
T ss_pred hHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHH
Confidence 9999999999999987521 11233468999999999999999999999999976 4444 56778888888887
Q ss_pred HHhh
Q 007394 379 VGDS 382 (605)
Q Consensus 379 v~~~ 382 (605)
+.+.
T Consensus 199 v~~~ 202 (426)
T cd03683 199 TFRL 202 (426)
T ss_pred HHHH
Confidence 7654
No 106
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=5.1e-11 Score=102.38 Aligned_cols=104 Identities=24% Similarity=0.418 Sum_probs=89.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++.+.++.++.+.|.+.+.+.+||+|+ ++++|+++..|+... . .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------------~~~~g~v~~~~l~~~--~----~-------------- 50 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN------------GKVVGIVSARDLLGK--D----P-------------- 50 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhcc--C----c--------------
Confidence 6788999999999999998888788999886 699999999998531 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+++++|.+.+.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~ 101 (107)
T cd04610 51 ------------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITN 101 (107)
T ss_pred ------------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEH
Confidence 01356777788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 102 ~di~~ 106 (107)
T cd04610 102 TDVIR 106 (107)
T ss_pred HHhhc
Confidence 99985
No 107
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.24 E-value=2.8e-10 Score=122.69 Aligned_cols=99 Identities=22% Similarity=0.284 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-C-
Q 007394 285 ILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N- 362 (605)
Q Consensus 285 ~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~- 362 (605)
..|++.+.+++++|.+.|++.|+.++|+++|..++++++.. ..+...+.++|++|.+++.+++|++++++++|+.. .
T Consensus 114 ~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~-~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~ 192 (443)
T COG0038 114 PVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS-REDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRF 192 (443)
T ss_pred HHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhc
Confidence 35999999999999999999999999999999999999532 34667899999999999999999999999999763 3
Q ss_pred Cc--chHHHHHHHHHHHHHHhhcC
Q 007394 363 LL--LLPITMIVLLIAKTVGDSFN 384 (605)
Q Consensus 363 ~~--~l~p~~~a~~~a~~v~~~l~ 384 (605)
+. .+.|+++++++++.+.+.++
T Consensus 193 ~~~~~l~p~~vaa~va~~v~~~~~ 216 (443)
T COG0038 193 LEYRALVPVLVAAVVALLVAGLFG 216 (443)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcC
Confidence 43 58899999999999998873
No 108
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.23 E-value=8.5e-11 Score=126.72 Aligned_cols=133 Identities=21% Similarity=0.325 Sum_probs=111.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.+.+|+++|+|+.++.+++.+.+++++.+.+.+++|+.+||++++ .+.++|+++.+|++..+.+...
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------~D~iiGiv~~Kdll~~~~~~~~-- 270 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------LDNIIGIVHVKDLLRALLDGQS-- 270 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------CCcEEEEEEHHHHHHHHhcCcc--
Confidence 6788999999999999999999999999999999999999999942 2789999999999876544210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
. ......+ ++|+.+++++++.++++.|++.+.+...|+|+
T Consensus 271 ~--------------------------------------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE- 310 (429)
T COG1253 271 D--------------------------------------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE- 310 (429)
T ss_pred c--------------------------------------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-
Confidence 0 0011111 37889999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCCc
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPHL 596 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~~ 596 (605)
.|.+.|+||.+|+++....+...+-
T Consensus 311 ----yG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 311 ----YGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred ----CCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 8999999999999999987665443
No 109
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.23 E-value=6.9e-11 Score=101.94 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=88.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~--------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------------GRVVGSIDESDLLDALIEGKAK--------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------------CeeEEEEeHHHHHHHHhccccc---------------
Confidence 5678899999999999999988899999986 6899999999998754321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++.++|.+ . ..+||+|+ +++++|+||+
T Consensus 55 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-----~~~~~Gvvt~ 104 (110)
T cd04609 55 -----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-----GGKFVGIITR 104 (110)
T ss_pred -----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-----CCeEEEEEeH
Confidence 0123556677888899999999999999988 3 34789987 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 105 ~di~~~ 110 (110)
T cd04609 105 ADLLKY 110 (110)
T ss_pred HHhhcC
Confidence 999863
No 110
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.23 E-value=1e-10 Score=100.49 Aligned_cols=111 Identities=26% Similarity=0.378 Sum_probs=92.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+...+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----------GRLVGIVTERDLLRALAEGGLDP-------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----------CCEEEEEeHHHHHHHHHhccCCc--------------
Confidence 56788999999999999998888999999987 89999999999977544311000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+.++|..++.++++++++.++.+.|.+.+.+.+||+|+ +++++|++|+
T Consensus 57 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 107 (113)
T cd02205 57 ------------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTR 107 (113)
T ss_pred ------------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEH
Confidence 00144566778889999999999999999999999999998 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd02205 108 SDILR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 111
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.23 E-value=6.2e-11 Score=127.27 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc------------cCCCcHHHHHHHHHhhhhhhcchhHH
Q 007394 284 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS 351 (605)
Q Consensus 284 ~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~------------~~~~~~~~a~~G~aa~~a~~~~~pls 351 (605)
++.|++.+.+++|+|.+.|.+.|+.++||++|..+++.+... ...+...+..+|++|.++++.++|++
T Consensus 88 ~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APia 167 (416)
T cd01036 88 LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIG 167 (416)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcce
Confidence 458999999999999999999999999999999999976421 12345679999999999999999999
Q ss_pred HHHHHHHHhc-CCc--chHHHHHHHHHHHHHHhhc
Q 007394 352 LCVIFLELTN-NLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 352 ~~vi~~E~tg-~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
++++.+|.+. +++ .+.+++++++++..+.+.+
T Consensus 168 GvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 168 GLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred eeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999874 333 5788889999999888765
No 112
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.21 E-value=1.8e-10 Score=124.64 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhh-hccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQ-YCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
|++.|+++..+..+.+++..++.... .+...++.+++++++.+.+. ++.|.. .|. |
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~~~~p~a----------------~Gs-G---- 57 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC--NYIIYVLLALLFAFIAVLLVKVVAPYA----------------AGS-G---- 57 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCccc----------------cCC-C----
Confidence 67899999999999998888775432 11223444455555555443 444443 111 1
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCC-CCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSN-TPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
-.+ ++..++.. ..+.+++. -.+.|++.+.+++++|.+.|++.|+.++||++|..++
T Consensus 58 -------Ip~------------v~~~l~g~~~~~~~~~~----~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~ 114 (445)
T cd03684 58 -------IPE------------IKTILSGFIIRGFLGKW----TLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIIS 114 (445)
T ss_pred -------HHH------------HHHHHcCccccccccHH----HHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHH
Confidence 111 11111110 01122232 2457999999999999999999999999999999999
Q ss_pred HHhhc--ccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHHHhhc
Q 007394 320 MAMGS--YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 320 ~~~~~--~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
+++.. ....+...+..+|++|.+++++++|++++++.+|.. .+++ .+.|.++++++|+.+.+.+
T Consensus 115 ~~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 115 RLFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred HHHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 98853 223456778999999999999999999999999965 4544 4788899999999888754
No 113
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.21 E-value=1e-10 Score=102.95 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=93.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+...... .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~-~~~~~----------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----------GRLVGIVTDRDLRDASPSPF-TTLSE----------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEHHHHHHHhhhhc-ccchh-----------
Confidence 56788999999999999998888899999987 89999999999976432110 00000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.+. ......+++++|.+.+.++++++++.++++.|.+.+.+.+||+|+ ++++|++|.
T Consensus 59 --~~~---------------~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~ 115 (121)
T cd04584 59 --HEL---------------YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITE 115 (121)
T ss_pred --hhh---------------hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEH
Confidence 000 001123467778888899999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 116 ~di~~ 120 (121)
T cd04584 116 TDLLR 120 (121)
T ss_pred HHhhc
Confidence 99986
No 114
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1e-10 Score=102.92 Aligned_cols=119 Identities=23% Similarity=0.306 Sum_probs=92.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.+.+.... ..+.. .
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~-~~~~~---------~- 58 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------------GKLVGIVTEKDIADALRSFR-PLVRD---------R- 58 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------------CEEEEEEchHHHHHhhhhhh-hcccc---------h-
Confidence 5678899999999999999888899999986 79999999999977544211 00000 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.. .......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 59 ---~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~ 115 (121)
T cd04633 59 ---HQ--------------ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTR 115 (121)
T ss_pred ---hh--------------hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEH
Confidence 00 0000123466778888999999999999999999999999999986 799999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 116 ~dl~~ 120 (121)
T cd04633 116 TDILR 120 (121)
T ss_pred HHhhc
Confidence 99985
No 115
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.18 E-value=3.2e-10 Score=120.94 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-C
Q 007394 284 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N 362 (605)
Q Consensus 284 ~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~ 362 (605)
.+.|++.+.+|+++|.+.|.+.|+.++|+++|..+++.++.....+...+..+|++|.+++++++|++++++.+|... +
T Consensus 80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~ 159 (390)
T cd01034 80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRD 159 (390)
T ss_pred HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhh
Confidence 457999999999999999999999999999999999998643235667899999999999999999999999999764 3
Q ss_pred C--cchHHHHHHHHHHHHHHhhc
Q 007394 363 L--LLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 363 ~--~~l~p~~~a~~~a~~v~~~l 383 (605)
+ ....+++++++++..+++.+
T Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~~ 182 (390)
T cd01034 160 FELRFSGLVLLAVIAAGLVSLAV 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35667788888888877654
No 116
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.7e-10 Score=99.11 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=88.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~v~~~~l~~~--~-~----------------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----------GELVGIITRKDLLRN--P-E----------------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhc--c-c-----------------
Confidence 57788999999999999998888899999987 899999999998531 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++|++++.+++++++++++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~ 100 (106)
T cd04638 51 ------------------------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTV 100 (106)
T ss_pred ------------------------cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEH
Confidence 01244556778889999999999999999999999999986 689999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 101 ~d~~~ 105 (106)
T cd04638 101 ADIVR 105 (106)
T ss_pred HHhhc
Confidence 99875
No 117
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.5e-10 Score=116.10 Aligned_cols=132 Identities=20% Similarity=0.299 Sum_probs=112.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++++|.|+|.++.++..+..+++.+++++.+.+..|+.+||-.++. +..+|++..+|+++++.++.-
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----------DnIiGvlh~r~llr~l~e~~~-- 264 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----------DNIIGVLHVRDLLRLLNEKNE-- 264 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh----------hHhhhhhhHHHHHHHhhccCc--
Confidence 77899999999998999999999999999999999999999987753 679999999999998876431
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
++-.++++ + -..|+++++++++.+-+..|++++-+.-.|||+
T Consensus 265 -------------~~k~d~~~-----------------------~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE- 306 (423)
T COG4536 265 -------------FTKEDILR-----------------------A-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE- 306 (423)
T ss_pred -------------ccHhHHHH-----------------------H-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-
Confidence 11112221 0 267889999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
.|.+.|+||.+|+++....+..
T Consensus 307 ----YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 ----YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred ----cCcEEeeeeHHHHHHHHhcccc
Confidence 8999999999999998876554
No 118
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=2.6e-10 Score=100.05 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=89.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
++.++++++++.++.+.+.+.+ ++.+||+|+ ++++|+++.+|+.+.+.+.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~~l~~~~~~~~-~~------------- 55 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------------GRPVGLIMREALMELLSTPY-GR------------- 55 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------------CeeEEEEEHHHHHHHHhchh-hH-------------
Confidence 5667899999999999998776 789999987 68999999999976543210 00
Q ss_pred cchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCc---EEEEccccccCCCCceEE
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR---HLLVVPKYEAAGVSPVVG 577 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~---~lpVVd~~~~~~~g~lvG 577 (605)
+ .....++.++|.+++.++++++++.++++.|.+++.+ ..+|+|+ +|+++|
T Consensus 56 ----~-----------------~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~G 109 (119)
T cd04598 56 ----A-----------------LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLG 109 (119)
T ss_pred ----H-----------------HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEE
Confidence 0 0011346778888999999999999999999998864 3468887 799999
Q ss_pred EEeHHHhHH
Q 007394 578 ILTRQDLRA 586 (605)
Q Consensus 578 iITr~Dll~ 586 (605)
+||++|+++
T Consensus 110 vvs~~di~~ 118 (119)
T cd04598 110 IGTVKDLLR 118 (119)
T ss_pred EEEHHHHhc
Confidence 999999975
No 119
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=3.1e-10 Score=103.57 Aligned_cols=136 Identities=23% Similarity=0.298 Sum_probs=96.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc---c-cc-hhHH
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK---R-RT-EEWE 496 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~---~-~~-~~~~ 496 (605)
+++++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+.......+. + .. ..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELP 69 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------------CeEEEEecHHHHHHHHHhccCccccccCCcceeeecc
Confidence 6788999999999999999999999999986 6899999999998766432210000 0 00 0000
Q ss_pred HhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceE
Q 007394 497 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV 576 (605)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lv 576 (605)
......+.+.... .++ ....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++
T Consensus 70 ~~~~~~~~~~~~~----------~~~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~ 132 (143)
T cd04634 70 LREFINWEETKRA----------LTD-AGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLV 132 (143)
T ss_pred chheeehHHHHHH----------HHH-HhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEE
Confidence 0000111111000 000 0124577888899999999999999999999999999999986 7899
Q ss_pred EEEeHHHhHH
Q 007394 577 GILTRQDLRA 586 (605)
Q Consensus 577 GiITr~Dll~ 586 (605)
|+||++|+++
T Consensus 133 Gvvt~~dl~~ 142 (143)
T cd04634 133 GIVTRGDIIE 142 (143)
T ss_pred EEEEHHHhhc
Confidence 9999999874
No 120
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.5e-10 Score=123.05 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=109.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhc-----CCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 484 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~-----~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~ 484 (605)
+-+++.+|++ +.++++++.|++++++.+++ .....++|+|++ ++++|+++.++++.. +
T Consensus 131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----------~~L~Gvvsl~~Ll~a--~-- 193 (451)
T COG2239 131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----------GKLLGVVSLRDLLTA--E-- 193 (451)
T ss_pred hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----------cceEEEeeHHHHhcC--C--
Confidence 3578999999 99999999999999999984 345688999998 899999999998531 0
Q ss_pred hhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 485 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
....++++|.+.+.++.++++.+++.++|++++.-.+|||
T Consensus 194 ----------------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVV 233 (451)
T COG2239 194 ----------------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVV 233 (451)
T ss_pred ----------------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceE
Confidence 0124778888999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEeHHHhHHHHhhhhCCCcCC
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 598 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~~~ 598 (605)
|+ +++++|+||.+|+++...++..+...+
T Consensus 234 d~-----~~~LiG~itiDDiidvi~eEa~eDi~~ 262 (451)
T COG2239 234 DE-----DNRLIGIITIDDIIDVIEEEATEDILR 262 (451)
T ss_pred CC-----CCceeeeeeHHHHHHHHHHHHHHHHHH
Confidence 99 899999999999999988876655443
No 121
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.98 E-value=7.4e-10 Score=104.23 Aligned_cols=133 Identities=21% Similarity=0.320 Sum_probs=110.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
..+++|+|+|.|+...++++.+.++.+.+..+.+..|+.|||+.++. +.+.|++..+||++++....-
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edk----------D~v~GIL~AKDLL~~~~~~~~-- 131 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHVEGILLAKDLLPFMRSDAE-- 131 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCc----------hhhhhhhhHHHHHHHhcCCcc--
Confidence 34779999999988999999999999999999999999999998753 789999999999987654210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
. .+++++ -++...|+++-.+...++-|+..+-+...|||+
T Consensus 132 ------------~--------------------------F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDE- 171 (293)
T COG4535 132 ------------P--------------------------FDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE- 171 (293)
T ss_pred ------------c--------------------------ccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEec-
Confidence 1 122232 266778999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCCc
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPHL 596 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~~ 596 (605)
.|-+.|.||.+|+++....+...+.
T Consensus 172 ----fGgVsGLVTIEDiLEqIVGdIEDE~ 196 (293)
T COG4535 172 ----FGGVSGLVTIEDILEQIVGDIEDEY 196 (293)
T ss_pred ----cCCeeeeEEHHHHHHHHhccccccc
Confidence 7999999999999998876555443
No 122
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.98 E-value=3.4e-09 Score=95.49 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=81.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++.+.......... .+.-...+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----------g~l~Givt~~Dl~~~~~~~~~~~~~~-~~~~~~~~~~ 69 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----------DFLEGILTLGDIQRFLFTNKTTRVQP-EDETKQTNTC 69 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHhhcccccccc-chhhcccccc
Confidence 67889999999999999998888999999987 89999999999988665422111000 0000000000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
...+++. ...+.++|.+++.++.+++++.+|++.|.+++.+.+||+|+
T Consensus 70 ~v~~i~~-----------------~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 70 LVSSVCT-----------------KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred cHHHHhh-----------------hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0001110 01133445677889999999999999999999999999987
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.93 E-value=2.2e-09 Score=81.27 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=51.9
Q ss_pred ccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 530 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 530 ~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+++|++++.++++++++.++++.|.+++.+++||+|+ +++++|+||++||+++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence 5788999999999999999999999999999999998 899999999999998764
No 124
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.88 E-value=1e-08 Score=108.12 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-
Q 007394 283 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN- 361 (605)
Q Consensus 283 ~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg- 361 (605)
-.+.|++.+.+|+++|.+.|.+.|+..+|+++|..+++.++.........+..+|++|.+++.+++|++++++.+|...
T Consensus 40 ~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~ 119 (355)
T PF00654_consen 40 TLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSR 119 (355)
T ss_dssp HHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCH
T ss_pred HHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeec
Confidence 3467999999999999999999999999999999999998532222245599999999999999999999999999863
Q ss_pred CC--cchHHHHHHHHHHHHHHhhc
Q 007394 362 NL--LLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 362 ~~--~~l~p~~~a~~~a~~v~~~l 383 (605)
++ ..+.|.++++++++.+.+.+
T Consensus 120 ~~~~~~~~~~~~as~~a~~v~~~~ 143 (355)
T PF00654_consen 120 DFSVRLLLPALVASIVATLVSRLL 143 (355)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHH
Confidence 43 46999999999999999987
No 125
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.74 E-value=2.5e-08 Score=101.03 Aligned_cols=111 Identities=19% Similarity=0.326 Sum_probs=95.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++.|+.++.++++....+++.++||.++. .-+.+|+|+|+.+|+-.. ++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--------~~~~KLvG~vtsrdi~f~-~~------------------- 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--------KRGSKLVGIITSRDIQFL-ED------------------- 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC--------cccceeEEEEehhhhhhh-hc-------------------
Confidence 45778999999999999999999999999865 345799999999999432 11
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++++|++.+.+.+.+.+++++-+++++.+...+||||+ +|+++-+|+|
T Consensus 169 -----------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~r 220 (503)
T KOG2550|consen 169 -----------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSR 220 (503)
T ss_pred -----------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeeh
Confidence 123578899999999999999999999999999999999999 8999999999
Q ss_pred HHhHHHH
Q 007394 582 QDLRAFN 588 (605)
Q Consensus 582 ~Dll~~~ 588 (605)
+||.+..
T Consensus 221 tDl~k~~ 227 (503)
T KOG2550|consen 221 TDLMKNR 227 (503)
T ss_pred hhhhhhc
Confidence 9999854
No 126
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.72 E-value=9.6e-08 Score=100.61 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=98.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++..+.+++++.++++.|.+.+.+++||||++ ++.+|.++..|+........+...... .
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----------g~~v~~~s~~Dv~~l~~~~~~~~~~~~----~----- 297 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----------GKKVGNYSRFDVIHLAREGTYNNLDLS----C----- 297 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----------CceecceehhhhhhhhhcCccCccchh----H-----
Confidence 57889999999999999999999999999998 788999999999876555433221100 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+.. ..+..=....+++.++.++.++++.+..++.++++|||+ +|+++|+||.
T Consensus 298 -l~~~~--------------------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSL 351 (381)
T KOG1764|consen 298 -LSEAL--------------------SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISL 351 (381)
T ss_pred -HHHHh--------------------hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeH
Confidence 11111 111111234689999999999999999999999999998 8999999999
Q ss_pred HHhHHHHhhhhCC
Q 007394 582 QDLRAFNILTAFP 594 (605)
Q Consensus 582 ~Dll~~~~~~~~~ 594 (605)
.|++.++..+...
T Consensus 352 sDil~~l~~~p~~ 364 (381)
T KOG1764|consen 352 SDILSYLVLTPSG 364 (381)
T ss_pred HHHHHHHHhCccC
Confidence 9999998865433
No 127
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.69 E-value=4.2e-08 Score=74.17 Aligned_cols=56 Identities=32% Similarity=0.588 Sum_probs=52.3
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 007394 413 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 481 (605)
Q Consensus 413 v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~ 481 (605)
|+++|++ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+++++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------SBEEEEEEHHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CEEEEEEEHHHHHhhhh
Confidence 5789999 99999999999999999999999999999988 99999999999988653
No 128
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.63 E-value=3.8e-08 Score=95.77 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=56.2
Q ss_pred hhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 525 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 525 ~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
..+++.+||++++.++++++++++|.+++.+++++.+||+|+ +.|++||||++|+.+....
T Consensus 243 ~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~GiVt~~dl~~~a~~ 303 (382)
T COG3448 243 GELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLVGIVTQRDLLKHARP 303 (382)
T ss_pred ccccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc-----ccceeeeeeHHHHhhccCc
Confidence 347899999999999999999999999999999999999999 8999999999999985443
No 129
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.57 E-value=5.4e-07 Score=94.74 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=89.5
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcc
Q 007394 423 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS 502 (605)
Q Consensus 423 v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~ 502 (605)
.....++.+..++.+.|.+.+.+...|+|++ +++.|.++.+++...+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------------------- 301 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-----------NKLVGVVDVESIKQARKKA------------------- 301 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----------CCEEEEEeHHHHHHHhhcC-------------------
Confidence 3445667788999999998888889999988 8999999999886543321
Q ss_pred hhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHH
Q 007394 503 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582 (605)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~ 582 (605)
-.+.+.|.+...++++++++.+++..|.+++.. +||+|+ +|+++|+||+.
T Consensus 302 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~ 351 (363)
T TIGR01186 302 ------------------------QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRG 351 (363)
T ss_pred ------------------------CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHH
Confidence 123445567778899999999999999999998 999998 89999999999
Q ss_pred HhHHHHhh
Q 007394 583 DLRAFNIL 590 (605)
Q Consensus 583 Dll~~~~~ 590 (605)
++++.+.+
T Consensus 352 ~~~~~~~~ 359 (363)
T TIGR01186 352 SLVDALYD 359 (363)
T ss_pred HHHHHHHh
Confidence 99998865
No 130
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=8.2e-07 Score=94.48 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=93.8
Q ss_pred cccccccccCCC-eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 411 LTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 411 ~~v~diM~~~~~-v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+++.++|.+... .+...++.+..++++.|.+.+.+.++|+|++ +++.|+++.+++.+.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----------NKFVGAVSIDSLKTALTQQ------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------CcEEEEEeHHHHHhhhhcC------
Confidence 466777754111 1233466788999999999999999999998 8999999999996532210
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
.++.+.+.+...++.+++++.+++..+.+.... +||||+
T Consensus 337 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--- 375 (400)
T PRK10070 337 -------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE--- 375 (400)
T ss_pred -------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---
Confidence 123444556778999999999999999997776 999998
Q ss_pred CCCCceEEEEeHHHhHHHHhh
Q 007394 570 AGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||+.++++.+..
T Consensus 376 --~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 376 --DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred --CCcEEEEEEHHHHHHHHHh
Confidence 8999999999999998864
No 131
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2.1e-06 Score=91.76 Aligned_cols=98 Identities=22% Similarity=0.145 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc------------cCCCcHHHHHHHHHhhhhhhcchhHH
Q 007394 284 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS 351 (605)
Q Consensus 284 ~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~------------~~~~~~~~a~~G~aa~~a~~~~~pls 351 (605)
++.|++-...+.+.|...|..+|.+..||+++..+++.=... ..-+..-++.||+||..++++|+|+.
T Consensus 189 L~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvG 268 (762)
T KOG0474|consen 189 LIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVG 268 (762)
T ss_pred hHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCcc
Confidence 457999999999999999999999999999999998753220 12345678999999999999999999
Q ss_pred HHHHHHHHhcCC---cchHHHHHHHHHHHHHHh
Q 007394 352 LCVIFLELTNNL---LLLPITMIVLLIAKTVGD 381 (605)
Q Consensus 352 ~~vi~~E~tg~~---~~l~p~~~a~~~a~~v~~ 381 (605)
++++.+|=.-++ .++-=+..++.++..+-+
T Consensus 269 GvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 269 GVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred ceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 999999965443 344455555555555554
No 132
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.18 E-value=5.1e-07 Score=100.98 Aligned_cols=144 Identities=19% Similarity=0.294 Sum_probs=100.1
Q ss_pred cccccccccc-cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 409 RTLTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 409 ~~~~v~diM~-~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
...+|+++|+ + +++++++++++.++.+.|.+++++.+||+|++ ++++|+++++|+.+...++....
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----------g~lvGiit~~dl~~~~~~~~iLV 310 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----------GKVVGVISRYHLLSPVRKKVILV 310 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----------CCEEEEEEHHHhhccccCceEEE
Confidence 3578999999 7 89999999999999999999999999999988 89999999999987543321110
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCcee---cCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV---IESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v---~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
+.. +.... .... ++.+.. .-.| +-++.++|++.|..+ +...+...+.++|.+.++...|++
T Consensus 311 D~~-----e~~q~--~~~~-------~~~~i~-~iiD-HH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~i 374 (546)
T PRK14869 311 DHN-----EKSQA--VEGI-------EEAEIL-EIID-HHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEI 374 (546)
T ss_pred cCc-----ccccc--ccch-------hhceEE-EEec-CCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHH
Confidence 000 00000 0000 000000 0001 123556777777655 446778899999999999988888
Q ss_pred cccccCCCCceEEEEeHHHhHHH
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~ 587 (605)
.. ..+.||+|.++.++.
T Consensus 375 a~------~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 375 AG------LLLAAILSDTLLFKS 391 (546)
T ss_pred HH------HHHHHHHHHhcCccC
Confidence 75 579999999888864
No 133
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.08 E-value=5.2e-06 Score=72.34 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=50.9
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
.+++++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 4588999999999999999999999999999999999998 789999999999864
No 134
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.03 E-value=4.7e-06 Score=74.24 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=56.3
Q ss_pred hhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 525 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 525 ~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
..+.++.+|+++.+.+.|++++.++.++|+++++.++||+++ ++++|-||..|+.+...+.
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEG 123 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhcc
Confidence 346789999999999999999999999999999999999997 8999999999999988654
No 135
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.01 E-value=5.3e-06 Score=90.23 Aligned_cols=113 Identities=11% Similarity=0.216 Sum_probs=88.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|++ ++.++++++++.++.+.|+++++..+||||++ ++++|+|+.+|+++.+.+..
T Consensus 195 ~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----------g~lvGiIt~~Dil~~l~~~~------ 255 (449)
T TIGR00400 195 EILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----------GRLVGIVTVDDIIDVIQSEA------ 255 (449)
T ss_pred CcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----------CeEEEEEEHHHHHHHHHhhh------
Confidence 468999998 88999999999999999999999999999988 89999999999987665421
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
.+++|+....+..+++++.++...+.+++...++|.
T Consensus 256 --------------------------------------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~------ 291 (449)
T TIGR00400 256 --------------------------------------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL------ 291 (449)
T ss_pred --------------------------------------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH------
Confidence 112333334444457788999999999999888875
Q ss_pred CCCceEEEEeHHHhHHHHhh
Q 007394 571 GVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~ 590 (605)
.+.|++| ..+++.+.+
T Consensus 292 ---~~~~~~t-~~ii~~f~~ 307 (449)
T TIGR00400 292 ---LVSSTFT-ATIISNYED 307 (449)
T ss_pred ---HHHHHHH-HHHHHHHHH
Confidence 2778888 777766543
No 136
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.98 E-value=0.00032 Score=76.92 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=57.1
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
+.+.++|.++...+..++|..|..+.+....++.+|+||+ .+..-++|.|.|+.|...+..+.-++
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s---~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES---KESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC---cccceeeehhHHHHHHHHHHhhcCcc
Confidence 5689999999999999999999999988888999999987 44556999999999998887755444
No 137
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.97 E-value=8.7e-06 Score=78.33 Aligned_cols=58 Identities=26% Similarity=0.278 Sum_probs=54.5
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.++.++|+++++++.+++|++|+.+.|.+++++..||+|+ ++++|++|.+|+.++..+
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------dk~vGiit~~dI~~aia~ 229 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD------DKIVGIITLSDIAKAIAN 229 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC------CceEEEEEHHHHHHHHHc
Confidence 4689999999999999999999999999999999999997 599999999999998775
No 138
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.78 E-value=3.8e-05 Score=66.37 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=50.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|++|++|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----------~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----------GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CeEEEEEEhHHhhc
Confidence 458899987 88899999999999999999999999999987 89999999999864
No 139
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77 E-value=4.2e-05 Score=66.60 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=50.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.+++|+|.+ ++.++++++++.++++.|.+.++..+||+|++ ++++|+++.+|+.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHhh
Confidence 679999998 88899999999999999999999999999987 8999999999984
No 140
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.66 E-value=6.5e-05 Score=65.18 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=50.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|+++
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----------ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEhHhhcc
Confidence 3568899988 88999999999999999999999999999987 89999999999853
No 141
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.64 E-value=8.5e-05 Score=62.84 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=42.5
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHH
Q 007394 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFN 588 (605)
Q Consensus 537 ~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~ 588 (605)
+.++++++++.++.+.|.+.+.+.+||+|+ + |+++|+||.+|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-----~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS-----RKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC-----CCCEEEEEEEHHHHhhhe
Confidence 468999999999999999999999999986 4 7899999999998754
No 142
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.62 E-value=0.00013 Score=63.88 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=44.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+..++++++++.++.+.|.+++.+.+||+|+ +|+++|++|++|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHHh
Confidence 4568899999999999999999999999998 799999999999997653
No 143
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.61 E-value=0.00016 Score=79.43 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=81.7
Q ss_pred cccccccc-cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 411 LTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 411 ~~v~diM~-~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
.+++++|. + +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.......
T Consensus 147 ~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~DLl~~~~~p~a~~-- 211 (486)
T PRK05567 147 QPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----------GRLKGLITVKDIEKAEEFPNACK-- 211 (486)
T ss_pred CcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEEhHHhhhhhhCCCccc--
Confidence 46889998 5 78999999999999999999999999999998 89999999999976542211000
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
+.+..+.+...|..++ .+ .+..+.|.+.+.+.+ |+|.
T Consensus 212 --------------------------------d~~g~l~V~aai~~~~------~~-~e~a~~L~~agvdvi-vvD~--- 248 (486)
T PRK05567 212 --------------------------------DEQGRLRVGAAVGVGA------DN-EERAEALVEAGVDVL-VVDT--- 248 (486)
T ss_pred --------------------------------ccCCCEEEEeecccCc------ch-HHHHHHHHHhCCCEE-EEEC---
Confidence 0001123444444332 12 667777888899855 6664
Q ss_pred CCCCceEEEEeHHHhHHH
Q 007394 570 AGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~ 587 (605)
.+++..++++.-+.++.
T Consensus 249 -a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 249 -AHGHSEGVLDRVREIKA 265 (486)
T ss_pred -CCCcchhHHHHHHHHHh
Confidence 14667777765555543
No 144
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.57 E-value=0.00017 Score=51.11 Aligned_cols=47 Identities=34% Similarity=0.468 Sum_probs=42.1
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 537 ~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
+.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHhh
Confidence 457889999999999999999999999998 78999999999997653
No 145
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.53 E-value=0.00022 Score=64.14 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHhh
Confidence 4568999999999999999999999999998 7999999999999987654
No 146
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.47 E-value=0.00027 Score=59.39 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=43.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 4678899999999999999999999999998 7999999999999864
No 147
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.45 E-value=0.00017 Score=75.23 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=52.8
Q ss_pred hhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 525 MYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 525 ~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
..++++++|++ ++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||.+|+.+...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-----~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-----NMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-----CCcEEEEEecHHHHHHHh
Confidence 34678999997 8899999999999999999999888888887 799999999999987543
No 148
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.43 E-value=0.00018 Score=63.05 Aligned_cols=57 Identities=28% Similarity=0.579 Sum_probs=51.3
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
...+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----------RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----------CCEEEEEEhHHhhc
Confidence 34578899988 89999999999999999999999999999977 89999999999854
No 149
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.42 E-value=0.00046 Score=61.02 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=45.9
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 535 ~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++...+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHHH
Confidence 45678999999999999999999999999998 7899999999999976554
No 150
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.42 E-value=0.00024 Score=61.27 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=49.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-----------GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----------CCEEEEEEhHHhc
Confidence 467889987 88899999999999999999999999999987 8999999999984
No 151
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.39 E-value=0.00021 Score=74.37 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=53.7
Q ss_pred hcccccccccC--CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 526 YIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 526 ~~~v~~im~~~--~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
..+++++|+++ +.++++++++.++.+.|.+.+...+||+|+ +|+++|+||.+|+.+...
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-----~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-----QQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEecHHHHHHHHh
Confidence 36799999998 999999999999999999999999999998 899999999999987553
No 152
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.38 E-value=0.00027 Score=61.15 Aligned_cols=56 Identities=27% Similarity=0.512 Sum_probs=49.2
Q ss_pred ccccccccccCCCeeEEcCc--ccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGI--EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~--~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.++.++|.+ ++.+++++ +++.++++.|.+++...+||+|++ ++++|+++++|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----------GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----------CCEEEEEEhHHhhc
Confidence 3568889987 78888877 689999999999999999999987 89999999999864
No 153
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.0003 Score=60.26 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=50.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
+.+++++|.+ ++..+.+++++.++++.|.+++...+||+|++ ++++|+++..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-----------GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----------CcEEEEEEhHHhhhh
Confidence 3568889987 88999999999999999999998899999987 899999999999753
No 154
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.34 E-value=0.00035 Score=60.81 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=51.4
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-----------GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----------CcEEEEEEHHHhhh
Confidence 34678899988 88999999999999999999999999999987 89999999999864
No 155
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00035 Score=59.76 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=50.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----------KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 3468899988 88999999999999999999999999999987 89999999999853
No 156
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.0006 Score=58.34 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=44.9
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 535 ~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-----DGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-----CCcEEEEEeHHHHHHHHh
Confidence 56678999999999999999999999999998 799999999999987543
No 157
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00039 Score=61.09 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=46.7
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 413 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 413 v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----------GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----------CcEEEEEeHHHhh
Confidence 3457777 88999999999999999999999999999987 8999999999984
No 158
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.30 E-value=0.00043 Score=59.59 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=50.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.+.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..|+.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDK-----------GKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEEHHHhh
Confidence 34578899988 88999999999999999999888899999987 8999999999984
No 159
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.28 E-value=0.0017 Score=68.69 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=96.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+.+.+.+..++-++...+.+++++.+||.|.+ .+.++.+++.+-+++.+.......
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~ilt~~rIl~~l~~~~~~~-------------- 218 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYILTQRRILKFLWLNGRLL-------------- 218 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeehhHHHHHHHHHHhhccc--------------
Confidence 44888999999999999999999999999943 279999999999988776532111
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.. ++.+.. --+..+...+.+++++.+|+++|.+.++..+||||+ .|+.+|++++
T Consensus 219 ~~~~~l~~--s~~dl~-------------ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~ 278 (381)
T KOG1764|consen 219 PLPSLLSK--SLSDLG-------------IGTWSNIASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSR 278 (381)
T ss_pred ccHHHhhC--CHHHhC-------------cchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceeh
Confidence 11111110 011110 011235678899999999999999999999999999 7888999999
Q ss_pred HHhHHHHhhhhCCCc
Q 007394 582 QDLRAFNILTAFPHL 596 (605)
Q Consensus 582 ~Dll~~~~~~~~~~~ 596 (605)
.|+.....+.-+..+
T Consensus 279 ~Dv~~l~~~~~~~~~ 293 (381)
T KOG1764|consen 279 FDVIHLAREGTYNNL 293 (381)
T ss_pred hhhhhhhhcCccCcc
Confidence 999987765444433
No 160
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00045 Score=59.34 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=48.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++...+||+|+ ++++|+++.+|+++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDG------------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------------CEEEEEEEHHHhhc
Confidence 468899987 7889999999999999999999899999985 79999999999854
No 161
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.27 E-value=0.00044 Score=75.72 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=53.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
+.+++++|++.++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----------g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----------GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEhHHHHhc
Confidence 46799999865578899999999999999999999999999987 899999999999774
No 162
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.00092 Score=57.37 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-----DERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEeeHHHHHHHHhc
Confidence 4568899999999999999999999999998 7999999999999876543
No 163
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.00042 Score=59.94 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=49.4
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++.++++++++.++++.|.+.+...+||+|+ ++++|+++++|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN------------NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------------CEEEEEEEHHHhhc
Confidence 3578899987 8999999999999999999999999999986 68999999999854
No 164
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.24 E-value=0.00077 Score=57.21 Aligned_cols=48 Identities=27% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|++|.+|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-----~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-----DGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEeHHHHHHhc
Confidence 4668999999999999999999999999997 79999999999998753
No 165
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.24 E-value=0.00053 Score=58.96 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=49.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++...+||+|++ ++++|+++..|+++
T Consensus 59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-----------GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEEEHHHhhc
Confidence 468899988 88899999999999999999888999999976 89999999999853
No 166
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00048 Score=60.19 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=51.2
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----------GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CCEEEEEEHHHhhc
Confidence 45678899988 88999999999999999999888899999987 79999999999853
No 167
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.23 E-value=0.00054 Score=58.26 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=49.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----------NNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----------CeEEEEEEHHHhhc
Confidence 458889987 78899999999999999999888899999987 89999999999853
No 168
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.23 E-value=0.0005 Score=75.28 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=54.1
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
..+++++|++++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+...
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALF 392 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 46789999999999999999999999999999999999998 789999999999998654
No 169
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.22 E-value=0.0005 Score=59.11 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=49.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|++
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----------~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----------GQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----------CCEEEEEEHHHhc
Confidence 568899987 88899999999999999999998899999987 8999999999985
No 170
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.21 E-value=0.00093 Score=58.22 Aligned_cols=49 Identities=33% Similarity=0.420 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++++++++.++.+.|.+++.+.+||+|+ +++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-----~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-----DGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence 4568999999999999999999999999998 789999999999998764
No 171
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.20 E-value=0.00047 Score=69.81 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=53.3
Q ss_pred hcccccccccC-CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 526 YIDLHPLTNTT-PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 526 ~~~v~~im~~~-~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
..+++++|+++ +.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||.+|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHH
Confidence 46789999988 899999999999999999999999999998 79999999999998754
No 172
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.19 E-value=0.00079 Score=72.30 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=51.9
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+++|+|++ ++.+++.+++++++.+.+.+++++++||.++ ..++++|+|+.+|++....
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~----~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE----TIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC----CCCceEEEEEHHHHHhHhc
Confidence 468999997 6789999999999999999999999999976 1368999999999997543
No 173
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.18 E-value=0.001 Score=47.01 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=41.1
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 423 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 423 v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
+.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----------GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----------CeEEEEEEHHHHHHh
Confidence 4678899999999999999999999999987 799999999999664
No 174
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.18 E-value=0.001 Score=56.96 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=44.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|++|.+|+++....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-----GGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEehHHHHHHHhh
Confidence 3467899999999999999999999999998 7899999999999986543
No 175
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.18 E-value=0.00091 Score=57.41 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+|+++|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-----DGRLVGIVSLDDIREILF 50 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC-----CCCEEEEEEHHHHHHHHh
Confidence 4568899999999999999999999999998 789999999999987543
No 176
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.18 E-value=0.0018 Score=70.51 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=53.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+++++|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----------g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----------GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHhC
Confidence 468999998 99999999999999999999999999999987 899999999999876544
No 177
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.17 E-value=0.00069 Score=58.57 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=47.4
Q ss_pred cccccccccCCCeeEEcC--cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSG--IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~--~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++++|.+ +...+.. ++++.++++.|.+++...+||+|++ ++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----------~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----------GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----------CeEEEEEEHHHhhc
Confidence 357889987 6666655 9999999999999999999999987 89999999999853
No 178
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.17 E-value=0.00073 Score=60.73 Aligned_cols=56 Identities=20% Similarity=0.427 Sum_probs=50.2
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+.+++++|.+ ++..+.+++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------------~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN------------DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------------CEEEEEEEHHHHhh
Confidence 35679999988 8889999999999999999999999999986 68999999999854
No 179
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00059 Score=58.48 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=49.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----------GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 357888987 88999999999999999999888999999987 89999999999853
No 180
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00055 Score=59.81 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=50.9
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
...++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----------DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CcEEEEEEhHHhhc
Confidence 34568889987 88999999999999999999999999999987 89999999999854
No 181
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00097 Score=57.57 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=44.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-----EGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-----CCcEEEEEeHHHHHHHhh
Confidence 3467899999999999999999999999998 789999999999987654
No 182
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00057 Score=59.99 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=50.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----------~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----------GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CcEEEEEEHHHhhc
Confidence 4568889987 89999999999999999999998999999986 79999999999864
No 183
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.16 E-value=0.0011 Score=57.23 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-----DGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence 4568899999999999999999999999998 799999999999987654
No 184
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.15 E-value=0.00077 Score=73.43 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=51.5
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
..+++++|.++|.++++++++.++.++|.+++.+.+||+|+ +++++|+||.+|+..
T Consensus 88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-----~gklvGIVT~rDL~~ 143 (479)
T PRK07807 88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-----EGRPVGVVTEADCAG 143 (479)
T ss_pred hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECC-----CCeEEEEEeHHHHhc
Confidence 35678899999999999999999999999999999999998 789999999999854
No 185
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.15 E-value=0.00071 Score=57.63 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=48.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----------GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-----------CeEEEEEehHHhh
Confidence 357888987 88999999999999999999888999999987 8999999999985
No 186
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.15 E-value=0.00074 Score=57.75 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=50.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++.++|.+ ++.++++++++.++++.|.+.+...+||+|++ +++.|+++.+|+.+
T Consensus 55 ~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----------GELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----------CcEEEEEEhHHhhc
Confidence 4668899988 88999999999999999998888889999987 89999999999853
No 187
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.15 E-value=0.00076 Score=57.75 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=49.4
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++.++|.+ ++.++++++++.++++.|.+++.+.+||+| + ++++|+++.+|+++
T Consensus 55 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----------~~~~Gvvt~~di~~ 109 (110)
T cd04595 55 HAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----------GRLVGIVTRTDLLR 109 (110)
T ss_pred cCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----------CEEEEEEEhHHhhc
Confidence 4578899988 889999999999999999999999999999 5 89999999999853
No 188
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.13 E-value=0.00073 Score=57.66 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred ccccccccccCCCeeEEcC-cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSG-IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~-~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.++.++|.+ ++..+.+ ++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----------GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----------CCEEEEEEhhhhhc
Confidence 3568889977 5666666 9999999999999999999999987 89999999999853
No 189
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.13 E-value=0.00057 Score=61.13 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=49.9
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..+++++|.+ ++.++++++++.++++.|.+.+.+.+||+| + |+++|+++++|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----------g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----------GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----------CEEEEEEEhHhhhc
Confidence 4578899988 889999999999999999999999999999 6 89999999999854
No 190
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.0013 Score=58.20 Aligned_cols=48 Identities=38% Similarity=0.491 Sum_probs=43.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++.++.+++++.++.++|.+.+.+.+||+|+ +++++|+||+.|+.+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-----NGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-----CCcEEEEEEHHHHHHHH
Confidence 3457899999999999999999999999998 78999999999998654
No 191
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.11 E-value=0.0011 Score=67.79 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=51.4
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHH
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFN 588 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~ 588 (605)
..++++|++ +..+++++++++++.+.+.+++.+++||+++ + ++++|+|+.+|++...
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~-----~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-----DKDHIEGILMAKDLLPFM 126 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC-----CCCcEEEEEEHHHHHhHh
Confidence 468999987 5889999999999999999999999999986 4 7899999999998654
No 192
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.10 E-value=0.0012 Score=56.95 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=42.7
Q ss_pred CCceecCCCCHHHHHHHHHHcC-CcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVG-LRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~-~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+..++++++++.++.+.|.+.+ .+.+||+|+ +++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-----EGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-----CCcEEEEEEHHHHHHHHH
Confidence 3467899999999999997775 889999998 799999999999998654
No 193
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.10 E-value=0.00067 Score=58.27 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=49.4
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+++++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|++++.|+.+
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----------GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence 358899988 88899999999999999999888899999886 89999999999854
No 194
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.09 E-value=0.0009 Score=57.43 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=48.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++++|+.
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD------------DELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------------CEEEEEEEhhhhh
Confidence 4578899987 8889999999999999999999989999986 5899999999985
No 195
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.08 E-value=0.0009 Score=57.23 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=48.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ +++.|+++.+|+.
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----------GRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEEhHHhh
Confidence 457788887 88999999999999999999988999999987 8999999999985
No 196
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0011 Score=56.95 Aligned_cols=50 Identities=26% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+|+.+|+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-----NGNLVGFLSEQDCLKQLLE 51 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-----CCeEEEEeehHHHHHHhhh
Confidence 4568899999999999999999999999998 7899999999999875543
No 197
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0011 Score=58.52 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=45.5
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.|.+ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----------GKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----------CCEEEEEEHHHHhc
Confidence 45666 78899999999999999999988999999987 89999999999853
No 198
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.02 E-value=0.00098 Score=57.15 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=49.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++..+++++++.++++.|.+++...+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG------------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC------------CEEEEEEEhHHhhc
Confidence 3468889988 8899999999999999999999999999986 68999999999854
No 199
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.01 E-value=0.0012 Score=72.59 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=55.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|+++++++++++++++.++++.|.+++...+||+|++ ++++|+|+++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----------g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----------GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence 46789999983348899999999999999999999999999987 899999999999987764
No 200
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.01 E-value=0.0013 Score=56.25 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=49.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-----------GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----------CCEEEEEEHHHhhh
Confidence 467788988 89999999999999999999988999999987 89999999999853
No 201
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.99 E-value=0.0012 Score=56.93 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=48.4
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhc-CCCCeeeeecCCCCCCCCCCCCCc-eEEEeEeHHHH
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRN-TTHNGFPVLDEGVVPPSGLANVAT-ELHGLILRAHL 476 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~-~~~~~~PVvd~~~~~~~~~~~~~~-~lvGiVs~~dl 476 (605)
++.++|.+ ++.++.+++++.++.+.|.+ ++++.+||+|++ + +++|+++++|+
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----------~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----------GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----------CCeEEEEEEHHHc
Confidence 68899998 89999999999999999999 799999999986 6 99999999987
No 202
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0016 Score=57.43 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=42.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-----DDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEHHHHhh
Confidence 3568899999999999999999999999998 789999999999985
No 203
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.98 E-value=0.0018 Score=55.44 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~~ 590 (605)
+..++++++++.++.+.|.+.+.+.+||+|+ + ++++|++|.+|+.+...+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-----~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG-----DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-----CCceEEEEEEHHHHHHHHHc
Confidence 3467899999999999999999999999998 6 899999999999987654
No 204
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.98 E-value=0.0013 Score=56.36 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=49.4
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD------------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhc
Confidence 3568899988 8899999999999999999999999999986 68999999999854
No 205
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.98 E-value=0.0024 Score=54.06 Aligned_cols=51 Identities=31% Similarity=0.287 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++++|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-----DGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-----CCCEEEEEeHHHHHHHHHhc
Confidence 3467889999999999999999999999998 78999999999999877653
No 206
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0013 Score=58.51 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=44.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++.+.|.+.+.+++||+|+ +++++|++++.|+.+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-----EGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-----CCCEEEEEeHHHHHHHHhc
Confidence 4568899999999999999999999999998 7899999999999976643
No 207
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.96 E-value=0.0011 Score=57.92 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=49.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDEN-----------GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----------CCEEEEEEHHHhhh
Confidence 468899988 89999999999999999999998999999987 89999999999864
No 208
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.95 E-value=0.0011 Score=71.13 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=56.0
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
..+.++++.++++|++++|+.+|.+.|.+.|.+.+.|+|+ +++..||||++|+......+-.
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-----~~~~~GIvT~~dl~~~v~~~g~ 210 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-----SGPLLGIVTRKDLRSRVIADGR 210 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-----CCCccceeehHHHHHHHHhcCC
Confidence 4578889999999999999999999999999998999988 8999999999999998875433
No 209
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.95 E-value=0.0021 Score=55.01 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-----EEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-----CCCEEEEEehHHhHHHHh
Confidence 3467899999999999999999999999998 799999999999987543
No 210
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.94 E-value=0.0016 Score=70.95 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=50.7
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC---CceEEEEeHHHhHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVVGILTRQDLRA 586 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~---g~lvGiITr~Dll~ 586 (605)
.++++.|.+++.++++++++.++.++|.+++++.+||+|+ + ++++|+||.+|+..
T Consensus 80 k~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-----~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 80 KRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED-----GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred ccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-----CCCCCeEEEEEEHHHHhh
Confidence 4577888999999999999999999999999999999998 5 79999999999975
No 211
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.94 E-value=0.0013 Score=57.30 Aligned_cols=56 Identities=29% Similarity=0.587 Sum_probs=49.9
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
...++.++|.+ +..++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD------------GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC------------CEEEEEEEHHHhhc
Confidence 45678899988 8899999999999999999999999999987 68999999999853
No 212
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.0015 Score=55.14 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=48.0
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.
T Consensus 51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE------------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------------CEEEEEEEHHHhc
Confidence 357888988 8899999999999999999999999999986 7999999999984
No 213
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.91 E-value=0.0015 Score=55.45 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=47.1
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
++.++|.+ +..++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+..
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------------GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------------CEEEEEEEHHHhhc
Confidence 46778887 7889999999999999999999999999984 79999999999853
No 214
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0017 Score=65.21 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=80.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
.+-++++++|.+.+....-.+...-..+...+.+.....+.+++.+ ++.+|+|+..++...
T Consensus 271 ~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-----------~~~~g~v~~~~~~~~-------- 331 (386)
T COG4175 271 SRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-----------NKFVGVVSIDSLVKA-------- 331 (386)
T ss_pred hheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc-----------CceeeEEeccchhcc--------
Confidence 4556888999851112222222333456667776666666677765 679999987666321
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
.+.+.+.++.+++++.+.+....+... .++|+|+
T Consensus 332 --------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde- 365 (386)
T COG4175 332 --------------------------------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDE- 365 (386)
T ss_pred --------------------------------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcC-
Confidence 223566788999999999998887666 6899999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++|+|++.++++++..
T Consensus 366 ----~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 366 ----DGRYVGIISRGELLEALAR 384 (386)
T ss_pred ----CCcEEEEecHHHHHHHHhc
Confidence 8999999999999988753
No 215
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0013 Score=71.19 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccC--CCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh
Q 007394 283 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTN--IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360 (605)
Q Consensus 283 ~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~--~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t 360 (605)
-+++|-+..++++++|.+-|.++|+..++.++|.++.++++++.. +-..-+....+||..|.++++|++++++.+|-.
T Consensus 180 tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev 259 (696)
T KOG0475|consen 180 TLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEV 259 (696)
T ss_pred HHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhh
Confidence 356899999999999999999999999999999999999987522 334556677788888999999999999999976
Q ss_pred cCCc---chHHHHHHHHHHHHHHhhc
Q 007394 361 NNLL---LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 361 g~~~---~l~p~~~a~~~a~~v~~~l 383 (605)
-.+. .+---..++++|..+.+.+
T Consensus 260 ~~~fp~ktlw~sff~aLsAv~~L~~i 285 (696)
T KOG0475|consen 260 SYYFPLKTLWRSFFCALSAVTALRSI 285 (696)
T ss_pred hhcCCccchHHHHHHHHHHHHHHeee
Confidence 5322 2222233445555555444
No 216
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.81 E-value=0.0024 Score=55.47 Aligned_cols=48 Identities=35% Similarity=0.529 Sum_probs=43.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++.++++++++.++.+.|.+.+.+++||+|+ +++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-----EGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-----CCcEEEEEEHHHHHHHh
Confidence 4568899999999999999999999999998 79999999999998754
No 217
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.79 E-value=0.0029 Score=53.86 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=43.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ ++++|++|.+|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhc
Confidence 3467899999999999999999999999986 789999999999987543
No 218
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.76 E-value=0.0021 Score=54.83 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=44.3
Q ss_pred ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 416 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 416 iM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+|.+ ++.++++++++.++.+.|.+++.+.+||+++ ++++|+++++|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------------GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEhhhhhc
Confidence 7877 8889999999999999999999999999964 79999999999854
No 219
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.68 E-value=0.0031 Score=63.70 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=56.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
..+.++..+|++ ++.++.+.+++..+.+.|--.++.-+||+|++ .+++|+|+|+|+++.+..
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----------~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----------NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-----------ceEEEEEEHHHHHHHHHH
Confidence 345678899999 99999999999999999999999999999998 899999999999987765
No 220
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.63 E-value=0.0055 Score=65.01 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=42.8
Q ss_pred cccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 533 TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 533 m~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+.++..++++++++.+++....+.+. -++|+|+ |+++|+|++.++++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 331 LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------CeEEEEEeHHHHHHHHh
Confidence 34566789999999999999888776 5888875 99999999999998875
No 221
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.61 E-value=0.0039 Score=56.49 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|++|+.|+.+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------CeEEEEecHHHHHHHHHh
Confidence 4568899999999999999999999999986 789999999999876643
No 222
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.55 E-value=0.0044 Score=53.73 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=46.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCC---eeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN---GFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~---~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.+++++|.+ ++..+++++++.++++.|.+++.. ..||++++ ++++|+|+..|+.
T Consensus 60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvvs~~di~ 117 (119)
T cd04598 60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----------GRYLGIGTVKDLL 117 (119)
T ss_pred CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------CeEEEEEEHHHHh
Confidence 4568899988 899999999999999999887643 44688877 8999999999985
No 223
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.54 E-value=0.0035 Score=68.79 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=48.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
..++.|.++|.++++++++.++.++|.+++.+.+||+|+ ...+++++|+||.+|+..
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~--~~~~gkLvGIVt~~DL~~ 153 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD--GKVGGKLLGIVTSRDIDF 153 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeC--CccCCeEEEEEEHHHHhh
Confidence 356678899999999999999999999999999999986 001279999999999863
No 224
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.26 E-value=0.0073 Score=51.18 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=46.6
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------------GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhhc
Confidence 46677877 7888999999999999999999889999985 69999999999853
No 225
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0068 Score=65.16 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=55.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+..++++|.+ +++++.++++.+++.+.+++++.-..||||++ ++++|+++..|++..+..
T Consensus 195 ~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----------~~LiG~itiDDiidvi~e 254 (451)
T COG2239 195 DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----------NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-----------CceeeeeeHHHHHHHHHH
Confidence 4578899999 89999999999999999999999999999998 999999999999988765
No 226
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.57 E-value=0.023 Score=59.98 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=50.5
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+++.|.+ ++.++++++++.+++..+.++++. +||+|++ ++++|+|++.+++..+..
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 46677777 788999999999999999999888 9999988 999999999999887654
No 227
>PRK11573 hypothetical protein; Provisional
Probab=95.38 E-value=0.03 Score=60.28 Aligned_cols=58 Identities=2% Similarity=0.023 Sum_probs=49.6
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
.+++++|++ +...++.+++++++.+.+.+++++++||.++ ..++++|+|..+|++...
T Consensus 187 ~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~----~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 187 VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLM 246 (413)
T ss_pred CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC----CCCceEEEEEHHHHHHHh
Confidence 457888876 5567899999999999999999999999876 147899999999999754
No 228
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.92 E-value=0.043 Score=59.47 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=52.5
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
.+++++|++ +...++.+.+.+++.+.+.+++++++||.++ ..+.++|+++.+|++.+..+.
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~----~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG----DLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC----CCCcEEEEEEHHHHHHHHhcC
Confidence 458888886 4467788999999999999999999999984 167899999999999988765
No 229
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.50 E-value=0.045 Score=52.59 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=52.0
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+.++|+|-+ ...++..+.++.+.+..+.+..++++||+.+ ..+.+.||+--+||++.+...
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e----dkD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC----CchhhhhhhhHHHHHHHhcCC
Confidence 457888875 4468899999999999999999999999965 257899999999999977654
No 230
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.081 Score=56.63 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=49.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
++++.+.+ +..++++++++.+++..+.++... +||||++ ++++|+|++.++++.+..
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----------QQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 46667766 788999999999999999886655 9999988 999999999999988765
No 231
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.16 E-value=0.095 Score=54.30 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=51.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
...+.|+|++ +.++.+.+.+++++-+++++++...+||||++ ++++-++++.||.+.
T Consensus 170 ~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----------gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----------GELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccC-----------Cceeeeeehhhhhhh
Confidence 4567899999 66888999999999999999988899999998 999999999999664
No 232
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=92.81 E-value=0.14 Score=56.18 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=89.9
Q ss_pred ccccccccccccccCCCeeEEcCcccHH-HHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 007394 406 PWMRTLTVGELIDAKPPVITLSGIEKVS-QIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 484 (605)
Q Consensus 406 ~~l~~~~v~diM~~~~~v~~v~~~~tl~-~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~ 484 (605)
..+....++|+|++-.++..+..+..+. +......+++++.+||.+.+ ...++.+.+. ..+..++....
T Consensus 199 l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~---------~~~~i~~~L~-~~~~~~~~~~~ 268 (498)
T KOG2118|consen 199 LELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE---------PKNKIGGLLV-MNLLRLLQVEV 268 (498)
T ss_pred HHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc---------ccchhhHHHH-hhhhhhhcccc
Confidence 3466788999999977777777777765 55556668899999999875 2223333222 23322221100
Q ss_pred hhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 485 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
.....++.+.+......+++++++.+.++.|++.+.+.+.|.
T Consensus 269 --------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~ 310 (498)
T KOG2118|consen 269 --------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVR 310 (498)
T ss_pred --------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEe
Confidence 011245667777888889999999999999998777655554
Q ss_pred cccccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
+ ...-.+++|..|+ +...++...+
T Consensus 311 ~------~~~~~~~~~l~~~-~~~~~ev~de 334 (498)
T KOG2118|consen 311 N------GHVDIFVLTLEDL-EEVVKEVEDE 334 (498)
T ss_pred c------CCcceeeEeccch-hhhcceeccc
Confidence 4 3668899999998 5555444333
No 233
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.26 E-value=1.5 Score=43.33 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=35.9
Q ss_pred ecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 540 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 540 v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
+.....-.+++..+...+...+||+|+ +|+++|.||+.|++..
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDE-----DGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECC-----CCcEeeEEEHHHHhhh
Confidence 344455566888888899999999999 8999999999999864
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=85.52 E-value=1.5 Score=46.60 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=43.6
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 481 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~ 481 (605)
++.+ +.+ +..++++++++.+++....++++ .+||+|+ |+++|+|++.+++..+.
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN------------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------------CeEEEEEeHHHHHHHHh
Confidence 3455 455 67889999999999998887664 4788875 89999999999988764
No 235
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=81.19 E-value=6.3 Score=41.00 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=44.9
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l 480 (605)
++++-..++..+++.+++.+-+..|++++.+---|||+. |.+.|+||.+|++.-+
T Consensus 269 d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----------G~i~GLVTLEDIlEEI 323 (423)
T COG4536 269 DILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----------GDIQGLVTLEDILEEI 323 (423)
T ss_pred HHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----------CcEEeeeeHHHHHHHH
Confidence 444322368899999999999999988877777899998 9999999999997643
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.18 E-value=3 Score=42.53 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=44.1
Q ss_pred ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 416 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 416 iM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+.+ ++.++..++++.+.+....+.+ ..+||+|++ ++++|++++.+++.+|.+
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----------~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAP-CPVAVVDED-----------GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCC-CceeEEcCC-----------CcEEEEecHHHHHHHHhc
Confidence 4555 7788999999999988887765 358999998 999999999999887654
No 237
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=73.77 E-value=94 Score=36.47 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007394 151 HVMDIIPVTLIGIIGGILGGLYNHILHKVLR 181 (605)
Q Consensus 151 ~~~~l~~~illgi~~gl~g~~f~~~~~~~~~ 181 (605)
++.++...++=+++++.+..+|.+.+..+..
T Consensus 111 ~~y~~~~~~~e~~l~~~l~~if~~~~~~~~~ 141 (764)
T TIGR02865 111 TPLDFILSIVEASLSFVLYYIFNYSIPCLKN 141 (764)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567778888899999999999988876543
No 238
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=64.99 E-value=10 Score=37.71 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=37.9
Q ss_pred cccccccccccCC--CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKP--PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~--~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
...++.+.|.+.. +--.+.....-.+++..+...+...+||+|++ |+++|.+++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-----------GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-----------CcEeeEEEHHHHhh
Confidence 3445556554411 00112223344556666666777889999998 99999999999864
No 239
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=47.36 E-value=27 Score=30.61 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 007394 157 PVTLIGIIGGILGGLY 172 (605)
Q Consensus 157 ~~illgi~~gl~g~~f 172 (605)
..|++|+++|++|.++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 6788999999988765
No 240
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=45.16 E-value=16 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.1
Q ss_pred hhHHHHHHhHhhhhhhhhccchh
Q 007394 64 DRRDLITCGSSSGVCAAFRAPVG 86 (605)
Q Consensus 64 ~~r~l~~~g~aagiaa~F~aPl~ 86 (605)
.||+++-.+++++.++.+..+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 48999999999999988887653
No 241
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=43.91 E-value=39 Score=38.77 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=46.9
Q ss_pred CcHHHHHHHhcCCCCCCCC--CCccccccccccccccCCCeeEEcCccc-HHHHHHHHhcCCCCeeeeecCCCCCCCCCC
Q 007394 385 PSIYEIILELKGLPFLDAH--PEPWMRTLTVGELIDAKPPVITLSGIEK-VSQIVDVLRNTTHNGFPVLDEGVVPPSGLA 461 (605)
Q Consensus 385 ~~iy~~~l~~~g~~~l~~~--~~~~l~~~~v~diM~~~~~v~~v~~~~t-l~~a~~~l~~~~~~~~PVvd~~~~~~~~~~ 461 (605)
..+.+.|.+.+.. ..+.. ....+......+.+.+ +-..+....+ ++++.+.+...+ ..+.+.|++
T Consensus 14 ~~I~~SW~Rc~~~-~~p~~~~~~~~l~~~~~~~~~~~--~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~-------- 81 (638)
T PRK11388 14 PLIATSWERCNKL-MKRETWNVPHQAQGVTFASIYRR--KKALLTLGQAALEDAWEYMADRE-CALLILDET-------- 81 (638)
T ss_pred hHHHHHHHHHHhc-CCCcccCCCCcCCHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCC--------
Confidence 4566666665533 11111 1122333344455554 3333444444 555556665555 678889988
Q ss_pred CCCceEEEeEeHHHHHHHHhh
Q 007394 462 NVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 462 ~~~~~lvGiVs~~dl~~~l~~ 482 (605)
|.++......++...+.+
T Consensus 82 ---G~vL~~~g~~~~~~~~~~ 99 (638)
T PRK11388 82 ---GCILSRNGDPQTLQQLSA 99 (638)
T ss_pred ---ceEEEEeCCHHHHHHHHH
Confidence 999999988888765543
No 242
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=42.60 E-value=17 Score=39.54 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhCCCcCC
Q 007394 544 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 598 (605)
Q Consensus 544 ~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~~~ 598 (605)
..++++.+...+.|-..++|+++ +++.|+|..+|+++.-.++.+.++++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~------~~~~GVI~LkDivK~Gi~ERf~elR~ 461 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVEN------GRILGVIYLKDIVKPGIKERFAELRK 461 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC------CEEEEEEEehhhcchhHHHHHHHHHh
Confidence 35788889999999999999986 99999999999999887777777654
No 243
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=39.35 E-value=3.5e+02 Score=31.71 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHhHhhhhhh----hhccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHH
Q 007394 69 ITCGSSSGVCA----AFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 119 (605)
Q Consensus 69 ~~~g~aagiaa----~F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~ 119 (605)
+.|+++.+++. .|....-.++|-+-++.-..-. .+|+++++++++.+++.
T Consensus 404 ~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~-g~~pa~~aailsvl~fN 457 (890)
T COG2205 404 LICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLT-GRWPAVLAALLSVLVFN 457 (890)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHh
Confidence 34444444433 3778888999988877543212 56788888877776664
No 244
>PRK10490 sensor protein KdpD; Provisional
Probab=38.55 E-value=2.7e+02 Score=33.40 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=20.5
Q ss_pred ccCCCceeEEeeccCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 007394 132 LFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYN 173 (605)
Q Consensus 132 ~~g~~~~~~f~~~~~~~~~~~~~l~~~illgi~~gl~g~~f~ 173 (605)
+|-..|...|.+.. +-.+..+..++++|++.|.+..-..
T Consensus 461 fFF~~P~~Tf~v~~---~~~~~t~~v~l~va~v~~~l~~r~r 499 (895)
T PRK10490 461 LFFVAPRGTLAVSD---VQYLLTFAVMLTVGLVIGNLTAGVR 499 (895)
T ss_pred heeCCCceEEEEcC---cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455654555542 2234555566667777765554443
No 245
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=32.97 E-value=2.8e+02 Score=25.43 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=18.1
Q ss_pred hhHHHHHHhHhhhhhhhhccchhHHHHHHH
Q 007394 64 DRRDLITCGSSSGVCAAFRAPVGGVLFSLE 93 (605)
Q Consensus 64 ~~r~l~~~g~aagiaa~F~aPl~g~lF~~E 93 (605)
+...-++.|+++|+-..|- |+-|.-+.+=
T Consensus 14 ~tP~~iA~g~a~Gvf~g~~-P~~glh~~~~ 42 (154)
T TIGR03546 14 TSPAQLALAVALGMILGLT-PFLNLHNIAL 42 (154)
T ss_pred CCHHHHHHHHHHHHHHHhc-cchhHHHHHH
Confidence 3455678888888877774 4545444433
No 246
>COG4042 Predicted membrane protein [Function unknown]
Probab=31.64 E-value=1.2e+02 Score=24.79 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007394 158 VTLIGIIGGILGGLYNHI 175 (605)
Q Consensus 158 ~illgi~~gl~g~~f~~~ 175 (605)
..-+|.++|++++++..-
T Consensus 76 ~a~lgavaG~lsA~~taY 93 (104)
T COG4042 76 LASLGAVAGLLSALLTAY 93 (104)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345777788888777654
No 247
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.06 E-value=2e+02 Score=31.97 Aligned_cols=36 Identities=14% Similarity=0.380 Sum_probs=24.5
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHH
Q 007394 268 SSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGR 316 (605)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~ 316 (605)
..++.+..++..++.++++.+.. =.|.-++|+-+|.
T Consensus 423 ~~~SSgAvPF~T~~~ll~LwF~i-------------sVPLsf~G~y~g~ 458 (628)
T KOG1278|consen 423 GKHSSGAVPFSTMVALLFLWFGI-------------SVPLSFVGGYFGF 458 (628)
T ss_pred cCCCCCcccHHHHHHHHHHHHHh-------------hhhHHHhhHHhhc
Confidence 33445566777777777776643 4688899888875
No 248
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=26.82 E-value=79 Score=27.01 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCc-H-HHHHHHHHhhhhhhcc
Q 007394 305 LPIILMGSAYGRLLGMAMGSYTNIDQ-G-LYAVLGAASLMAGSMR 347 (605)
Q Consensus 305 ~Psl~iGa~~G~~~g~~~~~~~~~~~-~-~~a~~G~aa~~a~~~~ 347 (605)
.||+.-|..+|.++|..--+.+.... . .+++.|.++++++++.
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~~~~~~~~l~~~s~~L~gvmg 72 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDKKGGSLVALGGTSAALLGVMG 72 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHh
Confidence 59999999999998876544322222 2 3444445666666554
No 249
>PLN03100 Permease subunit of ER-derived-lipid transporter; Provisional
Probab=26.13 E-value=7.2e+02 Score=25.43 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhhccchhHH
Q 007394 9 VKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGV 88 (605)
Q Consensus 9 ~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F~aPl~g~ 88 (605)
.-+++.++++=++..+.+=|.-..+|..++-.+-| +--..+.+.-.|+=.++++.|=||.+
T Consensus 96 s~f~G~vla~Q~~~~L~~fGa~~~vG~~v~~~~vR-------------------ELgPvltAlilAgR~GSaiaAELGtM 156 (292)
T PLN03100 96 SSFVGMVFTIQFVREFTKLGLTRSIGGVLALAFSR-------------------ELSPVVTAIVLAGRVGSAFAAELGTM 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555555555555556666666666554432 11234445555555666666666654
Q ss_pred H
Q 007394 89 L 89 (605)
Q Consensus 89 l 89 (605)
=
T Consensus 157 r 157 (292)
T PLN03100 157 Q 157 (292)
T ss_pred h
Confidence 3
No 250
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=25.85 E-value=3.7e+02 Score=25.90 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCcCCcchHHHHHHHHHHHhhc
Q 007394 13 GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQ 43 (605)
Q Consensus 13 ~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~ 43 (605)
.+.+++..|.+.....|.+-+-++++..++.
T Consensus 14 v~~~~lv~G~a~a~~~~~~vl~~gla~~iAg 44 (213)
T PF01988_consen 14 VTTFGLVAGVAGAGVSSSVVLLAGLAGLIAG 44 (213)
T ss_pred HHHHHHHHHHHHcccChHHHHHHHHHHHHHH
Confidence 3445555555555557777776666666654
No 251
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=25.77 E-value=91 Score=35.82 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccchhhHHHHHHHHHHHhhhhhcccccc
Q 007394 158 VTLIGIIGGILGGLYNHILHKVLRLY-NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLA 216 (605)
Q Consensus 158 ~illgi~~gl~g~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 216 (605)
.+++++++|++|.+.-....++.... ..+.....++-++.++.+++++|+++=++|..+
T Consensus 576 s~~l~~~GGiiGi~lg~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~vGl~~GlyPA~r 635 (648)
T PRK10535 576 AVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLSAFLCSTVTGILFGWLPARN 635 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 47888999999888877665544432 112212244556677778888888877777653
No 252
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.15 E-value=2.4e+02 Score=24.11 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHHHHHHHHHHHH
Q 007394 108 FFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGL 171 (605)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~illgi~~gl~g~~ 171 (605)
+.+-.|+.+++..+++|..+ .+++..| |-++.+.+||+.+|++-..
T Consensus 48 lssefIsGilVGa~iG~llD---~~agTsP---------------wglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLD---KFAGTSP---------------WGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCCCc---------------HHHHHHHHHHHHHHHHHHH
No 253
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=24.48 E-value=5.4e+02 Score=23.40 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=15.8
Q ss_pred hccchhhHHHHHHHHHHHhhhhhcc
Q 007394 188 QKGKMHKLLLALSVSVFTSVCQYCL 212 (605)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~ 212 (605)
+.++++..++.++.|.+++.+.|.+
T Consensus 121 ~~~~~~~~l~~~~~G~~aa~~t~~i 145 (149)
T cd02431 121 GISFRKKFIEMAGLALGAAFISFLL 145 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777666543
No 254
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.17 E-value=4.7e+02 Score=29.18 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007394 153 MDIIPVTLIGIIGGILGGLY 172 (605)
Q Consensus 153 ~~l~~~illgi~~gl~g~~f 172 (605)
.-+..+++.|+++|.+++-+
T Consensus 301 ~~i~~y~~~~~iaGy~S~~~ 320 (521)
T PF02990_consen 301 AAIILYALTSFIAGYVSARL 320 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 44667788888888887755
No 255
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.14 E-value=1.1e+02 Score=25.36 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 007394 308 ILMGSAYGRLLGMAMG 323 (605)
Q Consensus 308 l~iGa~~G~~~g~~~~ 323 (605)
+.|||.+|.++|.+-.
T Consensus 32 lti~aiVg~i~Gf~~Q 47 (101)
T KOG4112|consen 32 LTIGAIVGFIYGFAQQ 47 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777776553
No 256
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=21.22 E-value=5.4e+02 Score=25.37 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCcCCcchHHHHHHHHHHHhhc
Q 007394 12 IGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQ 43 (605)
Q Consensus 12 ~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~ 43 (605)
+.+.+++.+|.+..-..|.+-+-++++..++.
T Consensus 31 lvt~falvaG~aga~~~~~~Vl~~Gla~liAg 62 (234)
T cd02433 31 LVSNLALVMGVAGAGVSNQTILLTGLAGLLAG 62 (234)
T ss_pred HHHHHHHHHHHHhhcCCcchhHHHHHHHHHHH
Confidence 34556677777777777766666666666554
No 257
>PF09775 Keratin_assoc: Keratinocyte-associated protein 2; InterPro: IPR018614 Members of this family comprise various keratinocyte-associated proteins. The function of these proteins is not known.
Probab=21.16 E-value=3.5e+02 Score=24.01 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=33.4
Q ss_pred HhhhhhhhhccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHH
Q 007394 73 SSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120 (605)
Q Consensus 73 ~aagiaa~F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~ 120 (605)
+..|.+.++..=+.-++|+.-.+++.+=...-+..++.+.+++.++-.
T Consensus 3 vst~~S~~lS~ll~vlifa~mq~~k~~l~sS~~~ti~GGflgS~lF~~ 50 (131)
T PF09775_consen 3 VSTGTSLLLSSLLSVLIFAGMQMYKPWLASSQLLTILGGFLGSLLFIF 50 (131)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhHHHhccchHHHHHHHHHHHHHHHH
Confidence 456677777788889999988888765444445566777777765544
No 258
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=20.88 E-value=6.4e+02 Score=22.94 Aligned_cols=96 Identities=19% Similarity=0.324 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHhhhhhhcchhHHHHHH
Q 007394 277 PSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGS-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 355 (605)
Q Consensus 277 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~-~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi 355 (605)
....+...+.|.++.++..| ..|.|++..+- .|.+.+..... ........+-.+|.+. .++.. +-++-.+.
T Consensus 42 ~~~a~~v~~lR~~l~~l~~G-----~~~s~~f~~Sl-~Ggl~S~~vM~ll~~~~~~~~S~~giSi-~Gai~-HN~gQl~v 113 (148)
T PF07456_consen 42 FKEALLVALLRILLGSLLFG-----TLFSPSFLFSL-AGGLLSLLVMALLKKLFKKKFSLIGISI-AGAIA-HNIGQLIV 113 (148)
T ss_pred hhHHHHHHHHHHHHHHHHhC-----cchHHHHHHHH-HHHHHHHHHHHHHHHhCCCCccHHHHHH-HHHHH-HHHHHHHH
Confidence 34455667889998887765 66788888753 33333332211 0011111122233222 12222 23444444
Q ss_pred HHHHhcCC---cchHHHHHHHHHHHHHH
Q 007394 356 FLELTNNL---LLLPITMIVLLIAKTVG 380 (605)
Q Consensus 356 ~~E~tg~~---~~l~p~~~a~~~a~~v~ 380 (605)
+.=+.++. .++|+++++.+++-.+.
T Consensus 114 a~~i~~~~~i~~ylP~Ll~~giitG~~~ 141 (148)
T PF07456_consen 114 ASLIIQSPAIFYYLPVLLIAGIITGLFT 141 (148)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence 43344443 36777777665555444
Done!