RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007394
(605 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 136 bits (344), Expect = 2e-35
Identities = 80/397 (20%), Positives = 150/397 (37%), Gaps = 72/397 (18%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
+ L VK G +G + G+ LG+EGP V IG I ++ +
Sbjct: 106 VRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD------------IFRLK 153
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
D R L+ G+++G+ AAF AP+ G+LF +EE+ +R L+ V++
Sbjct: 154 GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMS---T 210
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
+ + + L G L ++ + ++GII GI G ++N + +
Sbjct: 211 IMYRIFNHEVALIDVGKLSDAPLNTLW---------LYLILGIIFGIFGPIFNKWVLGMQ 261
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
L + ++ +L+ ++ + + P
Sbjct: 262 DLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT------------------------- 296
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
G N+ T F ++ F+ I L+ F P
Sbjct: 297 --SGGGF-----------------NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAP 337
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFL 357
G+F P++ +G+ G GM +++ G +A+ G +L+A S+R ++ ++ L
Sbjct: 338 GGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVL 397
Query: 358 ELTNNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILE 393
E+T+N L+ +I L A + +Y IL
Sbjct: 398 EMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA 434
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 48.0 bits (113), Expect = 4e-07
Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 418 DAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477
+ + V + ++ TT++GFPV+ + L G +LR L+
Sbjct: 14 NDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS---------RESQRLVGFVLRRDLI 64
Query: 478 LALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537
++++ Q+ V E + L + + +P
Sbjct: 65 ISIENARKKQD--------------GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSP 110
Query: 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+TV + + + +FR++GLR LV ++GI+T++D+
Sbjct: 111 FTVTDLTPMEIVVDIFRKLGLRQCLVTHNGR------LLGIITKKDV 151
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 43.4 bits (101), Expect = 2e-05
Identities = 20/177 (11%), Positives = 44/177 (24%), Gaps = 29/177 (16%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
+R+ T +++ +I V + +L P+ D
Sbjct: 17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS---------EANKFA 67
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
L + + + E + E I
Sbjct: 68 GLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGL---------REVERKIGAIPPETI 118
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+HP S+ A + + R + ++ G +V +LT+ +
Sbjct: 119 YVHP-----------MHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRI 164
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 42.7 bits (99), Expect = 3e-05
Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 34/183 (18%)
Query: 406 PWMR----TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLA 461
W + VG+++ V +++ ++ VLR T FP +D +
Sbjct: 2 SWSSANKYNIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGS 59
Query: 462 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSE 521
TE+ GL+ R + + WE REK V
Sbjct: 60 IDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFET------------- 106
Query: 522 EMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581
+ +P+ ++E S+ K LF +GL V + +VG++
Sbjct: 107 ---------CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK------LVGVVAL 151
Query: 582 QDL 584
++
Sbjct: 152 AEI 154
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 36.5 bits (83), Expect = 0.003
Identities = 17/176 (9%), Positives = 47/176 (26%), Gaps = 26/176 (14%)
Query: 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELH 468
+ + + + V + + + L + PV+D +
Sbjct: 2 KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE--------GNLVGIV 51
Query: 469 GLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYID 528
++ + +EE + E + + E ++ V
Sbjct: 52 DETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPV---------- 101
Query: 529 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ M+V + + + + L V+ ++G++ DL
Sbjct: 102 -AEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGD-----LIGLIRDFDL 151
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 34.8 bits (79), Expect = 0.011
Identities = 17/177 (9%), Positives = 43/177 (24%), Gaps = 37/177 (20%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
M++ +LI ++ +V + L P+ D
Sbjct: 10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK----------KQSF 59
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
G++ + L + + + E +
Sbjct: 60 VGMLTITDFINILHRYYKSALVQIYELE-----------------------EHKIETWRE 96
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ + + S+ A+ + + L V+ + ILT + +
Sbjct: 97 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN----TLYILTHKRI 149
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 33.6 bits (76), Expect = 0.018
Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 518 VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVG 577
+ EE + +++ +++ +A + ++ L +V + + +V
Sbjct: 54 LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDE-----LVA 108
Query: 578 ILTRQDL 584
I+ R DL
Sbjct: 109 IIARTDL 115
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 33.8 bits (76), Expect = 0.019
Identities = 20/177 (11%), Positives = 44/177 (24%), Gaps = 42/177 (23%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
M+ V +LI KP V+ + +IVD + +
Sbjct: 1 MKVKDVCKLISLKPTVVEED--TPIEEIVDRILEDPVTRTVYVARDNKLV---------- 48
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
+ + + ++ + + M
Sbjct: 49 ----------------GMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIM-- 90
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
P V + +A+ L ++ + VV + +VG L ++
Sbjct: 91 -------LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGE-----IVGDLNSLEI 135
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 33.7 bits (76), Expect = 0.020
Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 523 MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582
+ + ++ + + + L+VV +++ V GI++
Sbjct: 80 VTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDV-----VKGIVSLS 134
Query: 583 DL 584
D+
Sbjct: 135 DI 136
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 33.6 bits (76), Expect = 0.021
Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 48/174 (27%)
Query: 412 TVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGL 470
+G+L I + + + V ++ +L + P++DE L +
Sbjct: 7 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINV 55
Query: 471 ILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLH 530
++ +K + E +
Sbjct: 56 YEAYDVLGLIKGGIYNDLSLSVGEA-------------------------------LMRR 84
Query: 531 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
YT ++ ++ M R+ + VV +VG+LT D+
Sbjct: 85 SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGR-----LVGVLTLSDI 133
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 120
Score = 32.9 bits (74), Expect = 0.033
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 206 SVCQYCLPF---LADCKACDPSFPETCPT--NGRSGNFKQFNCPNGHYNDLATLLLTTND 260
C C P + C S + C + + + CP+G DL+ + +
Sbjct: 49 KRCLPCHPECQPQNSSETCFGSEADQCAACAHYKDSSSCVARCPSGVKPDLSYMPIWKYP 108
Query: 261 DA 262
D
Sbjct: 109 DE 110
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 31.4 bits (70), Expect = 0.12
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVA 547
+ + + + I + + L + Y V + S+
Sbjct: 28 REHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQ 87
Query: 548 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ + + + +R + V+ ++ +VGI+T D+
Sbjct: 88 EMLNVMEEHQVRRVPVISEHR------LVGIVTEADI 118
>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 29.4 bits (65), Expect = 0.34
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 206 SVCQYCLPFLADCKA---CDPSFPETC--PTNGRSGNFKQFNCPNGHYND 250
+ C C P + C+ S +TC + R G +CP+G
Sbjct: 49 AECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGA 98
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 29.7 bits (66), Expect = 0.45
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 523 MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582
+ + V + + M L ++ +RHL V+ + V+G+L+
Sbjct: 66 PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGK------VIGLLSIG 119
Query: 583 DL 584
DL
Sbjct: 120 DL 121
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 29.9 bits (66), Expect = 0.48
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+T + + + + L VV + + GIL+ D+
Sbjct: 86 VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLK-----LEGILSLADI 128
>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 155
Score = 29.3 bits (64), Expect = 0.88
Identities = 8/46 (17%), Positives = 12/46 (26%)
Query: 205 TSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYND 250
C C S + C N CP+G+ +
Sbjct: 94 DWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMN 139
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 28.3 bits (62), Expect = 1.2
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 494 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 553
++ S +L + + + + + L + +T +V + ++ +
Sbjct: 42 NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYM 101
Query: 554 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
++ + L VV K +VGI+T D
Sbjct: 102 QKHKIGCLPVVAKDV------LVGIITDSDF 126
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 27.9 bits (61), Expect = 1.5
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 523 MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582
+ + + T+ ++ +A + + LLV E ++G+++
Sbjct: 60 DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE------IIGVISAT 113
Query: 583 DL 584
D+
Sbjct: 114 DI 115
>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 28.0 bits (61), Expect = 2.0
Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 8/61 (13%)
Query: 208 CQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF--------NCPNGHYNDLATLLLTTN 259
C+ +C + T + CP G + TL+
Sbjct: 48 NSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYA 107
Query: 260 D 260
D
Sbjct: 108 D 108
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 27.8 bits (61), Expect = 2.2
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 522 EMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581
+ I + + T + + + + + ++H+L+ + + +VGI T
Sbjct: 65 GLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGK------IVGIFTL 118
Query: 582 QDL 584
DL
Sbjct: 119 SDL 121
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 27.6 bits (60), Expect = 2.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
V E+ ++ KA L + R ++VV VGILT D+
Sbjct: 70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGK-----PVGILTVGDI 112
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 26.9 bits (58), Expect = 3.6
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 523 MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582
+P TV+++ V A R+ +RH++VV K +VG+L+ +
Sbjct: 62 RLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGE-----LVGVLSIR 116
Query: 583 D-LRAFNIL 590
D IL
Sbjct: 117 DLCFERAIL 125
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 26.7 bits (58), Expect = 4.5
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 523 MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582
+ + + N +V R + V + ++GI+T
Sbjct: 61 NDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDH-----LLGIVTVD 115
Query: 583 DL 584
D+
Sbjct: 116 DI 117
>d1du5a_ b.25.1.1 (A:) Zeamatin {Maize (Zea mays) [TaxId: 4577]}
Length = 206
Score = 27.3 bits (60), Expect = 4.5
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 211 CLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPN 245
C F D C S C S FK CP+
Sbjct: 146 CPVFKKDEYCCVGSAANDCHPTNYSRYFKG-QCPD 179
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 26.4 bits (57), Expect = 4.7
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 523 MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582
+++ + + + V E ++ A++LF + +L VV + + G ++
Sbjct: 56 LDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMR-----LKGAVSLH 110
Query: 583 DL 584
D
Sbjct: 111 DF 112
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 26.4 bits (57), Expect = 5.9
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 523 MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582
+ + + V V + GL VV VVGI+T
Sbjct: 65 KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGR-----VVGIVTLT 119
Query: 583 DL 584
DL
Sbjct: 120 DL 121
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 26.4 bits (57), Expect = 6.1
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
P+ + V++A L ++ + + +V +VGI+T +D+R
Sbjct: 5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA---NRKLVGIITNRDMR 52
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965
{Enterococcus faecalis [TaxId: 1351]}
Length = 247
Score = 26.5 bits (58), Expect = 7.9
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 399 FLDAHPEPWMRTLTVG---ELIDAKPPVITL-SGIEKVSQIVDVLRNTTHNGFPVLDEG 453
F D + + +G + + P V+ + G K I ++N + + DE
Sbjct: 182 FFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNAPKQTWLITDEA 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.429
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,307,622
Number of extensions: 111856
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 40
Length of query: 605
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 514
Effective length of database: 1,158,166
Effective search space: 595297324
Effective search space used: 595297324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)