Query 007395
Match_columns 605
No_of_seqs 363 out of 1887
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 23:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 3.8E-71 8.2E-76 578.5 32.5 495 20-604 24-550 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 3.6E-52 7.8E-57 479.2 24.6 507 36-588 4-515 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 6.4E-33 1.4E-37 270.2 8.2 190 316-505 68-265 (415)
4 cd02669 Peptidase_C19M A subfa 100.0 5.3E-29 1.1E-33 270.8 16.3 157 314-502 114-289 (440)
5 cd02663 Peptidase_C19G A subfa 100.0 7E-30 1.5E-34 265.1 7.4 145 321-502 1-147 (300)
6 KOG1865 Ubiquitin carboxyl-ter 100.0 3.7E-29 7.9E-34 263.5 10.0 212 315-561 104-320 (545)
7 cd02658 Peptidase_C19B A subfa 100.0 3.4E-28 7.4E-33 253.8 14.3 149 321-502 1-164 (311)
8 cd02660 Peptidase_C19D A subfa 100.0 4.3E-28 9.4E-33 254.8 14.9 159 320-502 1-161 (328)
9 cd02657 Peptidase_C19A A subfa 99.9 1.4E-27 3.1E-32 248.4 15.0 148 321-501 1-156 (305)
10 cd02671 Peptidase_C19O A subfa 99.9 1.5E-27 3.4E-32 249.7 15.2 144 313-502 18-161 (332)
11 cd02668 Peptidase_C19L A subfa 99.9 1.2E-27 2.7E-32 250.9 11.1 150 321-501 1-155 (324)
12 KOG1868 Ubiquitin C-terminal h 99.9 5.1E-27 1.1E-31 258.3 11.9 190 314-504 296-493 (653)
13 cd02661 Peptidase_C19E A subfa 99.9 1.4E-26 3.1E-31 240.2 14.2 160 319-501 1-161 (304)
14 cd02666 Peptidase_C19J A subfa 99.9 2.1E-26 4.6E-31 241.0 12.9 158 319-500 1-177 (343)
15 cd02667 Peptidase_C19K A subfa 99.9 5.8E-26 1.3E-30 233.3 7.0 106 321-501 1-106 (279)
16 cd02664 Peptidase_C19H A subfa 99.9 8.9E-25 1.9E-29 229.5 13.0 133 321-499 1-134 (327)
17 cd02659 peptidase_C19C A subfa 99.9 1.4E-24 2.9E-29 228.9 12.5 149 318-500 1-149 (334)
18 PF06337 DUSP: DUSP domain; I 99.9 5E-23 1.1E-27 177.8 8.1 95 43-148 1-98 (99)
19 PF00443 UCH: Ubiquitin carbox 99.9 7.6E-23 1.6E-27 206.8 10.6 151 319-487 1-154 (269)
20 KOG1873 Ubiquitin-specific pro 99.9 9.3E-23 2E-27 219.1 8.8 180 315-499 201-400 (877)
21 KOG0944 Ubiquitin-specific pro 99.9 1.9E-22 4E-27 215.0 9.0 154 314-500 302-465 (763)
22 smart00695 DUSP Domain in ubiq 99.8 4.1E-21 8.8E-26 161.4 9.6 83 41-149 2-85 (86)
23 cd02662 Peptidase_C19F A subfa 99.8 2.8E-21 6.1E-26 194.1 9.2 90 321-502 1-91 (240)
24 KOG1872 Ubiquitin-specific pro 99.8 2.3E-21 4.9E-26 200.9 6.8 244 175-500 14-266 (473)
25 COG5207 UBP14 Isopeptidase T [ 99.8 1.9E-20 4E-25 193.4 7.2 154 315-501 298-457 (749)
26 KOG1867 Ubiquitin-specific pro 99.8 2.8E-19 6.1E-24 194.0 8.9 166 314-501 156-323 (492)
27 cd02673 Peptidase_C19Q A subfa 99.7 9.1E-17 2E-21 161.2 8.9 106 322-501 2-107 (245)
28 cd02674 Peptidase_C19R A subfa 99.7 3.7E-17 8.1E-22 162.9 6.1 78 321-502 1-78 (230)
29 KOG1863 Ubiquitin carboxyl-ter 99.7 8.2E-17 1.8E-21 191.2 8.9 152 317-503 168-319 (1093)
30 KOG2026 Spindle pole body prot 99.6 9.5E-16 2.1E-20 154.7 11.4 155 312-502 127-289 (442)
31 COG5077 Ubiquitin carboxyl-ter 99.6 7.3E-17 1.6E-21 173.8 3.1 153 314-504 188-340 (1089)
32 KOG1866 Ubiquitin carboxyl-ter 99.6 1.4E-16 3.1E-21 171.3 2.1 206 314-557 90-296 (944)
33 KOG1871 Ubiquitin-specific pro 99.6 6.9E-15 1.5E-19 149.3 8.3 179 317-502 26-263 (420)
34 PF13423 UCH_1: Ubiquitin carb 99.5 3.2E-14 7E-19 147.4 12.2 158 320-501 1-159 (295)
35 cd02665 Peptidase_C19I A subfa 99.5 7.9E-15 1.7E-19 144.8 7.1 94 321-503 1-94 (228)
36 cd02257 Peptidase_C19 Peptidas 99.5 3.1E-14 6.8E-19 141.7 7.1 95 321-502 1-95 (255)
37 PF14836 Ubiquitin_3: Ubiquiti 99.3 7.4E-12 1.6E-16 102.9 7.5 82 165-248 2-87 (88)
38 KOG1864 Ubiquitin-specific pro 99.2 4.2E-11 9.2E-16 132.6 8.8 238 316-562 229-476 (587)
39 cd02672 Peptidase_C19P A subfa 99.0 6.4E-11 1.4E-15 120.6 2.0 101 316-502 12-112 (268)
40 KOG4598 Putative ubiquitin-spe 99.0 7.2E-11 1.6E-15 126.7 0.1 126 314-501 82-207 (1203)
41 cd01813 UBP_N UBP ubiquitin pr 97.6 0.00023 5E-09 57.7 7.0 62 174-239 10-71 (74)
42 cd01796 DDI1_N DNA damage indu 97.5 0.00033 7.1E-09 56.3 7.2 60 174-239 10-69 (71)
43 KOG1275 PAB-dependent poly(A) 97.5 7.3E-05 1.6E-09 84.0 3.8 163 317-502 497-675 (1118)
44 cd01812 BAG1_N Ubiquitin-like 97.4 0.00062 1.3E-08 54.5 6.9 60 174-240 10-69 (71)
45 cd01807 GDX_N ubiquitin-like d 97.4 0.00083 1.8E-08 54.4 7.7 62 173-241 10-71 (74)
46 PF14533 USP7_C2: Ubiquitin-sp 97.3 0.00079 1.7E-08 66.3 8.1 112 491-604 3-126 (213)
47 cd01810 ISG15_repeat2 ISG15 ub 97.3 0.0015 3.2E-08 52.9 8.3 63 173-242 8-70 (74)
48 PTZ00044 ubiquitin; Provisiona 97.2 0.0016 3.5E-08 52.9 8.1 64 172-242 9-72 (76)
49 cd01795 USP48_C USP ubiquitin- 97.2 0.00095 2.1E-08 55.9 6.3 60 175-240 16-75 (107)
50 cd01800 SF3a120_C Ubiquitin-li 97.2 0.0013 2.9E-08 53.5 6.9 62 174-242 8-69 (76)
51 cd01805 RAD23_N Ubiquitin-like 97.2 0.0022 4.9E-08 52.1 8.2 62 174-242 11-74 (77)
52 cd01806 Nedd8 Nebb8-like ubiq 97.1 0.0026 5.6E-08 51.5 8.4 62 174-242 11-72 (76)
53 PF00240 ubiquitin: Ubiquitin 97.1 0.0012 2.7E-08 52.4 6.3 61 174-241 6-66 (69)
54 PF14560 Ubiquitin_2: Ubiquiti 97.1 0.0021 4.5E-08 53.8 7.7 66 174-240 14-81 (87)
55 cd01794 DC_UbP_C dendritic cel 97.1 0.0023 5E-08 51.2 7.1 60 173-239 8-67 (70)
56 cd01803 Ubiquitin Ubiquitin. U 97.1 0.0031 6.8E-08 51.0 8.0 62 174-242 11-72 (76)
57 cd01793 Fubi Fubi ubiquitin-li 97.0 0.0023 5E-08 51.8 7.1 62 174-242 9-70 (74)
58 cd01791 Ubl5 UBL5 ubiquitin-li 97.0 0.0033 7.1E-08 50.8 7.8 59 174-239 12-70 (73)
59 cd01799 Hoil1_N Ubiquitin-like 97.0 0.0023 5.1E-08 52.0 7.0 59 174-239 13-72 (75)
60 KOG1864 Ubiquitin-specific pro 97.0 0.0006 1.3E-08 76.3 4.6 104 322-426 34-152 (587)
61 cd01798 parkin_N amino-termina 97.0 0.0035 7.5E-08 50.1 7.6 59 174-239 9-67 (70)
62 cd01809 Scythe_N Ubiquitin-lik 97.0 0.0038 8.2E-08 49.9 7.6 59 174-239 11-69 (72)
63 cd01797 NIRF_N amino-terminal 96.9 0.0042 9.1E-08 50.9 7.8 61 176-243 14-75 (78)
64 cd01792 ISG15_repeat1 ISG15 ub 96.9 0.0039 8.4E-08 51.3 7.6 64 174-242 13-76 (80)
65 cd01802 AN1_N ubiquitin-like d 96.9 0.005 1.1E-07 53.3 8.2 63 173-242 37-99 (103)
66 cd01789 Alp11_N Ubiquitin-like 96.8 0.0074 1.6E-07 50.2 8.2 67 174-240 13-79 (84)
67 cd01808 hPLIC_N Ubiquitin-like 96.7 0.0076 1.6E-07 48.3 7.7 58 176-240 12-69 (71)
68 cd01804 midnolin_N Ubiquitin-l 96.7 0.014 3E-07 47.8 8.9 59 174-240 12-70 (78)
69 cd02670 Peptidase_C19N A subfa 96.6 0.0019 4.2E-08 64.7 3.9 19 407-425 22-40 (241)
70 cd01763 Sumo Small ubiquitin-r 96.4 0.033 7.1E-07 46.6 9.5 63 173-242 21-83 (87)
71 smart00213 UBQ Ubiquitin homol 96.1 0.012 2.5E-07 45.6 5.4 54 175-235 11-64 (64)
72 cd01769 UBL Ubiquitin-like dom 96.1 0.021 4.5E-07 44.9 6.7 59 174-239 8-66 (69)
73 TIGR00601 rad23 UV excision re 95.3 0.049 1.1E-06 58.1 7.7 62 174-242 11-75 (378)
74 PF11976 Rad60-SLD: Ubiquitin- 94.4 0.13 2.9E-06 41.0 6.3 59 174-239 11-70 (72)
75 PF11543 UN_NPL4: Nuclear pore 94.2 0.061 1.3E-06 44.2 3.9 62 175-239 15-77 (80)
76 cd01815 BMSC_UbP_N Ubiquitin-l 94.1 0.12 2.6E-06 41.8 5.3 51 182-239 19-72 (75)
77 cd01788 ElonginB Ubiquitin-lik 92.8 0.46 9.9E-06 41.2 7.1 66 175-247 13-86 (119)
78 cd01790 Herp_N Homocysteine-re 92.8 0.46 1E-05 38.9 6.8 58 175-239 15-76 (79)
79 KOG0010 Ubiquitin-like protein 92.2 0.41 8.8E-06 51.7 7.3 61 175-242 26-86 (493)
80 PLN02560 enoyl-CoA reductase 90.6 0.66 1.4E-05 48.3 6.9 62 176-239 16-80 (308)
81 PF14560 Ubiquitin_2: Ubiquiti 90.5 3.2 6.9E-05 34.5 9.8 68 520-588 14-85 (87)
82 cd01801 Tsc13_N Ubiquitin-like 90.4 0.83 1.8E-05 37.1 6.0 54 181-239 20-74 (77)
83 PF00789 UBX: UBX domain; Int 88.6 2.4 5.1E-05 34.7 7.5 67 170-240 13-81 (82)
84 cd01791 Ubl5 UBL5 ubiquitin-li 87.9 2.7 5.8E-05 33.8 7.2 67 507-584 3-71 (73)
85 smart00166 UBX Domain present 87.5 5.3 0.00011 32.6 8.9 68 169-240 10-79 (80)
86 cd01771 Faf1_UBX Faf1 UBX doma 87.0 5.7 0.00012 32.6 8.7 71 169-242 10-80 (80)
87 KOG4495 RNA polymerase II tran 86.4 1.1 2.4E-05 37.4 4.1 54 175-233 13-66 (110)
88 cd01773 Faf1_like1_UBX Faf1 ik 85.2 8.5 0.00018 31.8 8.8 71 169-242 11-81 (82)
89 cd00196 UBQ Ubiquitin-like pro 85.0 3.4 7.3E-05 30.2 6.2 59 174-239 8-66 (69)
90 cd01774 Faf1_like2_UBX Faf1 ik 83.0 9.3 0.0002 31.7 8.3 69 170-240 11-83 (85)
91 KOG0005 Ubiquitin-like protein 82.7 1.9 4.2E-05 32.7 3.6 58 174-238 11-68 (70)
92 cd01792 ISG15_repeat1 ISG15 ub 81.8 7.1 0.00015 31.8 7.2 68 506-582 3-72 (80)
93 cd01767 UBX UBX (ubiquitin reg 79.3 15 0.00033 29.5 8.4 65 169-239 8-74 (77)
94 cd01806 Nedd8 Nebb8-like ubiq 79.1 13 0.00029 29.4 7.9 67 507-584 2-70 (76)
95 PF05408 Peptidase_C28: Foot-a 77.7 1 2.2E-05 42.5 1.0 22 318-339 32-53 (193)
96 PF08817 YukD: WXG100 protein 77.2 4.8 0.0001 32.8 4.8 63 174-239 13-78 (79)
97 cd01804 midnolin_N Ubiquitin-l 76.6 14 0.00031 29.9 7.4 66 506-583 2-69 (78)
98 cd01770 p47_UBX p47-like ubiqu 76.2 20 0.00044 29.2 8.2 62 169-234 10-72 (79)
99 KOG0004 Ubiquitin/40S ribosoma 75.8 3.2 6.9E-05 38.1 3.6 61 175-242 12-72 (156)
100 PF00240 ubiquitin: Ubiquitin 74.8 16 0.00034 28.5 7.1 57 521-584 7-65 (69)
101 KOG3206 Alpha-tubulin folding 74.5 8.1 0.00017 37.2 6.0 66 174-239 13-78 (234)
102 cd06406 PB1_P67 A PB1 domain i 74.2 12 0.00026 30.7 6.1 53 175-229 12-64 (80)
103 PF11470 TUG-UBL1: GLUT4 regul 74.2 12 0.00025 29.5 6.0 58 174-238 7-64 (65)
104 cd01802 AN1_N ubiquitin-like d 72.4 22 0.00048 30.6 7.9 78 492-582 16-95 (103)
105 cd01803 Ubiquitin Ubiquitin. U 71.5 21 0.00045 28.2 7.2 65 508-583 3-69 (76)
106 KOG0011 Nucleotide excision re 71.4 8.2 0.00018 39.9 5.7 64 174-244 11-76 (340)
107 PF02017 CIDE-N: CIDE-N domain 71.4 49 0.0011 27.0 9.1 72 165-247 5-76 (78)
108 cd01805 RAD23_N Ubiquitin-like 71.3 20 0.00044 28.5 7.1 67 507-584 2-72 (77)
109 cd01799 Hoil1_N Ubiquitin-like 70.9 24 0.00052 28.5 7.3 57 522-585 15-74 (75)
110 cd01769 UBL Ubiquitin-like dom 70.6 18 0.00039 27.7 6.5 56 522-584 10-67 (69)
111 cd01789 Alp11_N Ubiquitin-like 69.7 29 0.00062 28.6 7.7 61 522-584 15-79 (84)
112 cd01814 NTGP5 Ubiquitin-like N 69.7 14 0.00031 32.3 5.9 62 164-234 8-76 (113)
113 cd01811 OASL_repeat1 2'-5' oli 69.7 24 0.00052 28.4 6.6 63 174-239 11-73 (80)
114 cd01807 GDX_N ubiquitin-like d 68.6 35 0.00075 27.1 7.9 66 508-584 3-70 (74)
115 PTZ00044 ubiquitin; Provisiona 68.3 28 0.00062 27.6 7.3 65 508-583 3-69 (76)
116 KOG1769 Ubiquitin-like protein 68.3 36 0.00077 29.0 7.9 67 165-239 23-89 (99)
117 cd01772 SAKS1_UBX SAKS1-like U 66.5 33 0.00072 27.9 7.4 66 170-240 11-78 (79)
118 PF08715 Viral_protease: Papai 63.0 14 0.0003 38.6 5.6 80 316-424 99-179 (320)
119 cd01798 parkin_N amino-termina 62.6 33 0.00071 26.9 6.5 54 522-582 11-66 (70)
120 cd01809 Scythe_N Ubiquitin-lik 61.9 37 0.0008 26.4 6.8 64 508-582 3-68 (72)
121 cd01768 RA RA (Ras-associating 60.0 64 0.0014 26.4 8.2 52 522-573 15-68 (87)
122 PF14533 USP7_C2: Ubiquitin-sp 57.8 28 0.00061 34.2 6.5 63 174-240 34-99 (213)
123 PF13881 Rad60-SLD_2: Ubiquiti 57.1 54 0.0012 28.7 7.4 69 165-240 5-84 (111)
124 PF11543 UN_NPL4: Nuclear pore 56.8 17 0.00037 29.8 4.0 72 506-584 5-78 (80)
125 cd01812 BAG1_N Ubiquitin-like 56.1 27 0.00059 27.2 5.1 55 522-583 12-68 (71)
126 cd01817 RGS12_RBD Ubiquitin do 55.9 70 0.0015 25.8 7.1 65 170-242 6-70 (73)
127 cd01810 ISG15_repeat2 ISG15 ub 55.4 48 0.001 26.3 6.4 56 522-584 11-68 (74)
128 cd01760 RBD Ubiquitin-like dom 55.2 66 0.0014 25.8 7.0 65 171-241 7-71 (72)
129 cd01796 DDI1_N DNA damage indu 55.1 56 0.0012 25.8 6.7 56 522-583 12-69 (71)
130 cd01615 CIDE_N CIDE_N domain, 54.3 39 0.00085 27.6 5.6 56 184-247 21-76 (78)
131 cd01808 hPLIC_N Ubiquitin-like 53.8 78 0.0017 24.8 7.4 53 523-582 13-67 (71)
132 smart00266 CAD Domains present 53.7 43 0.00093 27.0 5.6 30 183-212 18-47 (74)
133 PF12436 USP7_ICP0_bdg: ICP0-b 52.8 37 0.0008 34.2 6.6 38 174-211 190-227 (249)
134 COG5417 Uncharacterized small 52.8 49 0.0011 26.6 5.7 62 171-239 14-80 (81)
135 cd01763 Sumo Small ubiquitin-r 52.7 1E+02 0.0023 25.4 8.2 71 503-584 9-81 (87)
136 smart00666 PB1 PB1 domain. Pho 52.4 38 0.00083 27.3 5.5 39 174-212 11-49 (81)
137 cd06535 CIDE_N_CAD CIDE_N doma 52.2 1.1E+02 0.0023 25.0 7.6 30 183-212 20-49 (77)
138 cd01800 SF3a120_C Ubiquitin-li 51.7 52 0.0011 26.3 6.1 56 522-584 10-67 (76)
139 KOG0003 Ubiquitin/60s ribosoma 51.6 4.3 9.3E-05 34.7 -0.3 59 174-239 11-69 (128)
140 KOG2982 Uncharacterized conser 51.1 35 0.00075 35.3 5.9 67 174-240 348-415 (418)
141 PF00788 RA: Ras association ( 49.1 61 0.0013 26.5 6.4 44 164-207 4-52 (93)
142 KOG0010 Ubiquitin-like protein 48.5 49 0.0011 36.3 6.8 55 521-582 26-82 (493)
143 KOG4248 Ubiquitin-like protein 48.0 30 0.00065 41.2 5.5 61 174-242 13-73 (1143)
144 smart00314 RA Ras association 47.2 1.6E+02 0.0034 24.2 8.7 52 522-573 18-70 (90)
145 cd06411 PB1_p51 The PB1 domain 45.8 40 0.00087 27.5 4.4 53 176-229 9-62 (78)
146 TIGR00601 rad23 UV excision re 45.7 62 0.0014 34.8 7.2 68 507-585 2-74 (378)
147 smart00455 RBD Raf-like Ras-bi 44.4 1.1E+02 0.0023 24.4 6.7 63 171-241 7-69 (70)
148 cd06539 CIDE_N_A CIDE_N domain 44.0 70 0.0015 26.1 5.5 56 184-247 21-76 (78)
149 PF09379 FERM_N: FERM N-termin 43.3 1.2E+02 0.0026 24.1 7.1 64 174-239 7-72 (80)
150 PF10790 DUF2604: Protein of U 41.7 84 0.0018 24.5 5.3 62 175-242 7-71 (76)
151 PF13019 Telomere_Sde2: Telome 41.6 1.8E+02 0.004 27.2 8.6 57 507-563 2-58 (162)
152 cd01813 UBP_N UBP ubiquitin pr 41.1 81 0.0018 25.2 5.6 57 522-583 12-71 (74)
153 KOG0001 Ubiquitin and ubiquiti 41.0 1.5E+02 0.0033 22.1 7.6 60 174-240 10-69 (75)
154 cd06538 CIDE_N_FSP27 CIDE_N do 39.8 2E+02 0.0043 23.6 7.5 56 183-247 20-75 (79)
155 PF02196 RBD: Raf-like Ras-bin 39.3 1.4E+02 0.003 23.8 6.6 63 171-241 8-70 (71)
156 PF12436 USP7_ICP0_bdg: ICP0-b 39.1 34 0.00074 34.5 3.8 64 176-241 87-151 (249)
157 KOG1871 Ubiquitin-specific pro 37.2 19 0.0004 38.2 1.6 112 316-428 175-316 (420)
158 cd06407 PB1_NLP A PB1 domain i 37.1 21 0.00045 29.4 1.6 60 521-589 11-70 (82)
159 cd01794 DC_UbP_C dendritic cel 36.7 1.4E+02 0.0031 23.5 6.3 54 522-582 11-66 (70)
160 cd01776 Rin1_RA Ubiquitin doma 35.8 1.1E+02 0.0023 25.3 5.3 40 174-213 14-54 (87)
161 cd01783 DAGK_delta_RA Ubiquiti 35.8 70 0.0015 27.3 4.5 48 157-208 4-54 (97)
162 cd01768 RA RA (Ras-associating 35.6 1.1E+02 0.0025 24.8 5.9 39 173-211 12-52 (87)
163 KOG0006 E3 ubiquitin-protein l 34.9 45 0.00097 34.3 3.8 58 175-239 15-74 (446)
164 PF15499 Peptidase_C98: Ubiqui 34.8 1.4E+02 0.0031 30.1 7.1 27 323-349 6-32 (275)
165 PF03671 Ufm1: Ubiquitin fold 34.4 2.4E+02 0.0053 22.6 6.9 69 164-239 4-75 (76)
166 PF00788 RA: Ras association ( 34.1 2.5E+02 0.0055 22.7 8.4 67 507-573 4-72 (93)
167 cd01779 Myosin_IXb_RA ubitquit 32.9 2.6E+02 0.0057 23.7 7.3 59 507-565 12-70 (105)
168 smart00295 B41 Band 4.1 homolo 32.5 3.6E+02 0.0079 25.4 9.9 69 162-232 3-72 (207)
169 cd06536 CIDE_N_ICAD CIDE_N dom 32.1 1.4E+02 0.0031 24.5 5.5 57 183-247 20-78 (80)
170 PF02192 PI3K_p85B: PI3-kinase 30.8 1.6E+02 0.0035 24.0 5.8 63 176-239 2-72 (78)
171 cd06398 PB1_Joka2 The PB1 doma 30.6 1.8E+02 0.0039 24.4 6.2 46 182-229 23-69 (91)
172 PF04110 APG12: Ubiquitin-like 30.6 2.1E+02 0.0046 23.9 6.5 61 174-240 16-79 (87)
173 PF11976 Rad60-SLD: Ubiquitin- 30.4 2.1E+02 0.0045 22.2 6.4 63 508-584 3-71 (72)
174 smart00314 RA Ras association 30.2 2E+02 0.0043 23.6 6.5 38 173-210 15-54 (90)
175 PF00564 PB1: PB1 domain; Int 29.7 1.3E+02 0.0029 24.0 5.4 38 178-215 16-53 (84)
176 cd05992 PB1 The PB1 domain is 29.3 1.2E+02 0.0027 24.1 5.0 40 175-214 11-51 (81)
177 cd01793 Fubi Fubi ubiquitin-li 28.9 2E+02 0.0043 22.7 6.1 55 522-583 11-67 (74)
178 PF08825 E2_bind: E2 binding d 28.9 44 0.00095 27.7 2.2 61 178-239 1-68 (84)
179 PLN02560 enoyl-CoA reductase 28.6 2.2E+02 0.0049 29.7 7.9 79 508-588 3-85 (308)
180 cd06396 PB1_NBR1 The PB1 domai 28.2 40 0.00087 27.7 1.8 66 522-599 12-79 (81)
181 cd06407 PB1_NLP A PB1 domain i 27.4 1.4E+02 0.0031 24.5 5.0 53 175-229 11-64 (82)
182 cd01775 CYR1_RA Ubiquitin doma 26.8 2.4E+02 0.0053 24.0 6.2 47 164-211 4-51 (97)
183 cd01784 rasfadin_RA Ubiquitin- 25.2 1.4E+02 0.003 24.9 4.4 48 174-222 13-62 (87)
184 PF09379 FERM_N: FERM N-termin 25.0 3.5E+02 0.0075 21.3 7.1 52 522-574 9-61 (80)
185 cd06409 PB1_MUG70 The MUG70 pr 25.0 2E+02 0.0044 23.9 5.5 56 172-229 9-67 (86)
186 cd06537 CIDE_N_B CIDE_N domain 24.9 2.4E+02 0.0051 23.3 5.6 56 183-247 20-75 (81)
187 cd01782 AF6_RA_repeat1 Ubiquit 24.8 3.1E+02 0.0067 23.9 6.6 62 164-226 23-92 (112)
188 smart00143 PI3K_p85B PI3-kinas 23.5 2.6E+02 0.0056 22.9 5.7 63 176-239 2-72 (78)
189 KOG1867 Ubiquitin-specific pro 22.6 38 0.00082 37.8 0.9 31 316-346 74-104 (492)
190 cd06404 PB1_aPKC PB1 domain is 22.0 52 0.0011 27.1 1.4 70 522-600 12-82 (83)
191 COG5077 Ubiquitin carboxyl-ter 21.3 2.4E+02 0.0053 32.9 6.8 96 490-587 873-971 (1089)
192 COG5100 NPL4 Nuclear pore prot 21.0 3.3E+02 0.0071 29.2 7.2 66 175-242 11-79 (571)
193 cd01801 Tsc13_N Ubiquitin-like 20.9 2.6E+02 0.0057 22.2 5.4 53 527-583 20-74 (77)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-71 Score=578.51 Aligned_cols=495 Identities=33% Similarity=0.555 Sum_probs=404.5
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccc
Q 007395 20 CTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99 (605)
Q Consensus 20 ~~~~~q~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll~ 99 (605)
.+..+|++.|.+ . . ....+.++..|+++..|++...++..- .+..||||+-.+|++
T Consensus 24 Lp~~~q~~li~e-~-~-~e~~k~~~~a~i~~y~wyeg~fd~~~~---------------------dg~~pgPi~q~~i~d 79 (823)
T COG5560 24 LPLMMQEELIDE-K-P-AESSKQCEYAVIFAYAWYEGMFDRASC---------------------DGGSPGPIVQGPIVD 79 (823)
T ss_pred cchHHHHHHHhc-C-c-hhhhccCceEEEEehHHhhhhcccccc---------------------cCCCCCCCCcccccc
Confidence 447788888876 2 1 223455889999999999998887533 245799999999998
Q ss_pred CCCCCCCCCcccccccccCCCcEEEeCHHHHHHHHHHhc-CCCCcceeeeeecCCCceeeeeccceEEEEecCC--C---
Q 007395 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK-GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRD--N--- 173 (605)
Q Consensus 100 ~~~~~~~~~~~~Lk~~L~e~~Df~iVp~~vW~~L~~wYG-ggp~I~R~vi~~~~~~~~~vElyp~~l~i~~~~~--~--- 173 (605)
- +...|++.+.++.||-+|+..+|++|++||| .|+.++|.++.-.......+|+||+.+++..... +
T Consensus 80 ~-------e~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~ 152 (823)
T COG5560 80 F-------EPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLI 152 (823)
T ss_pred c-------ChhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEeccccccCCccccccceEEEEEEEeccchhh
Confidence 3 3578999999999999999999999999999 7789999997655545558999999998764332 1
Q ss_pred ----CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCC-----------------CCChhhhccC
Q 007395 174 ----SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVS-----------------DQTLDDAMLQ 232 (605)
Q Consensus 174 ----~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~-----------------~~tl~d~~l~ 232 (605)
....+.+|+..|+.++.+++..+|-.|.++.|||++...+.. ..+.+. ..++.++...
T Consensus 153 n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~-~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d 231 (823)
T COG5560 153 NLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMG-LRLGLDSFFRRYRVLASDGRVLHPLTRLELFED 231 (823)
T ss_pred hcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCccc-ccccCHHHHhhcchhccchhhhcccHHHHhccc
Confidence 467889999999999999999999999999999998776544 111110 0111121111
Q ss_pred CCCeEEEEEeecCccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCcccccCCCCCCCCCcCCCCCCCCcccccc
Q 007395 233 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAK 312 (605)
Q Consensus 233 ~~~~llle~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (605)
.+..++=+...++.|.+.+. . + +..+ + ..
T Consensus 232 ~s~lll~kit~np~wlvdsi-------------------------------------~---------~-~~n~---s-in 260 (823)
T COG5560 232 RSVLLLSKITRNPDWLVDSI-------------------------------------V---------D-DHNR---S-IN 260 (823)
T ss_pred hhhhHHhhhccCCccceeee-------------------------------------c---------c-hhhh---h-HH
Confidence 11111111112333321110 0 0 0001 0 01
Q ss_pred cCCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHH
Q 007395 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA 391 (605)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~ 391 (605)
+ .-|.+||+|+||||||||+||||.||++||+||+ ..|..++|..||+|+.|.++.+|+.|+++++.+...+++|..
T Consensus 261 k--e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~ 338 (823)
T COG5560 261 K--EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSG 338 (823)
T ss_pred h--hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHH
Confidence 1 1389999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCCh---hhhhhHhhhccccCCCccccccc
Q 007395 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPD---EEVANECWKNHKARNDSLIVDVF 468 (605)
Q Consensus 392 f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~---~~~a~~~w~~~~~~~~s~I~~lF 468 (605)
|+..++.++..|+||.|||+|||+.||||+|||+|||+.+|||.+.+|-....+ ...|+++|..|++||+|+|.++|
T Consensus 339 fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLF 418 (823)
T COG5560 339 FKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLF 418 (823)
T ss_pred HHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999999999999999999999999999887543333 35689999999999999999999
Q ss_pred ceEEEeEEecCCCCCeeeeeccceeEeecCCCCCceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCC
Q 007395 469 QGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKID 548 (605)
Q Consensus 469 ~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 548 (605)
+|.++|++.|+.|+.+|++||||++|+||||....+...+.+++.+|...| ..+.+.+.+++.++++.+.+..|+.+-
T Consensus 419 qgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc 496 (823)
T COG5560 419 QGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGC 496 (823)
T ss_pred HHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999998888 778888899999999999999999877
Q ss_pred CcEEEEEEECCceeEecccCcccc-cCcCCCCeEEEEEecCCCCCceEEEEeeeccc
Q 007395 549 EGLLLAEVYNHQIFRFFENPAELI-SSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQE 604 (605)
Q Consensus 549 ~~~~~~e~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~e~~~~~~~~~~~~~~~~~~~ 604 (605)
-.+.+.++|..++++.+..-+..+ ..|++.|.+|.|| ..++.+.+||+|-+.|
T Consensus 497 ~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~ 550 (823)
T COG5560 497 FEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIE 550 (823)
T ss_pred cceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccc
Confidence 788999999999999998545544 5899999999999 3555699999997655
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-52 Score=479.22 Aligned_cols=507 Identities=39% Similarity=0.577 Sum_probs=425.9
Q ss_pred cccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCccccccc
Q 007395 36 SDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRN 115 (605)
Q Consensus 36 ~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll~~~~~~~~~~~~~Lk~~ 115 (605)
+...+..|+.+++|...|+.+|++|++.. ... ..........++|++||...+. ...+.. .+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~---------~~~~~~~~~~k~~~~~n~~~~~--~~~~~~---~~~~~ 68 (842)
T KOG1870|consen 4 SRRTCKSGKSHGLILWRCLEQWQSYVGLE-SYH---------EISTIHSQAPKHGLTDNLTFLR--CDACDK---TLRVS 68 (842)
T ss_pred cccccccccccchhhhhhhhhccccccce-eee---------ccccccccccccccccCccchh--Hhhhhh---HHHhh
Confidence 35678899999999999999999999771 110 0111223456899999999998 222222 89999
Q ss_pred ccCCCcEEEeCHHHHHHHHHHh-cCCCCcceeeeeecCCCc-eeeeeccceEEEEecCCCCceEEEeChhchHHHHHHHH
Q 007395 116 LEEGQDYVLVPQQVWEKLFCWY-KGGPALPRKMISEGIVNE-KRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKV 193 (605)
Q Consensus 116 L~e~~Df~iVp~~vW~~L~~wY-Gggp~I~R~vi~~~~~~~-~~vElyp~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l 193 (605)
+.++.||.++|+++|+.+..|| .|++++.|.|+..+.... ..+|+||..+.+..........+..+...|+.++...+
T Consensus 69 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 148 (842)
T KOG1870|consen 69 LLEGLDYTISPRSVQKLLVEWFKSGGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQADSTCPPLTSYF 148 (842)
T ss_pred hccccccccCCHHHHhhccccccCCCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccccCccHHHHHH
Confidence 9999999999999999999999 478999999998865444 68899999999888776543448889999999999999
Q ss_pred HHHhCCCCceeEEEEecCCCccccccCCCC-CChhhhccCCCCeEEEEEe-ecCccccccCCCCCccccCCCCCcccccc
Q 007395 194 CKLRGIEQEKARIWDYFNKQRSTSPLDVSD-QTLDDAMLQMDQDILLEVQ-VDNGISMDSTGNDLALVPIEPSRSSLTIA 271 (605)
Q Consensus 194 ~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~-~tl~d~~l~~~~~llle~~-~~g~~~~~~~~~~~~~~~~~p~~~~~~~~ 271 (605)
+..++++.+..++|.....+.. .++.+.+ .++....+..++.+++|+. ++++|+......-.... +.. ..+.
T Consensus 149 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~- 222 (842)
T KOG1870|consen 149 LESGGLPRTKFAIWASYNEKYL-SLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDW---LSE-RDPD- 222 (842)
T ss_pred HHhcCCCcccchhhhhhhHhhh-cccccccccccccccccccceEEeeeccccccchhhhchhhcccc---ccc-cccc-
Confidence 9999999999999988776644 5554444 6788889999999999988 78888432211000000 000 0000
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCcCCCCCCCCcccccccCCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-h
Q 007395 272 GGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-G 350 (605)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~ 350 (605)
..+. ...+.............+|.+||.|+||||||||.+|||.+++++++||+ .
T Consensus 223 -----~~~~-------------------~~s~~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~ 278 (842)
T KOG1870|consen 223 -----ASGT-------------------KETRVDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSD 278 (842)
T ss_pred -----cCCC-------------------cccccccccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhH
Confidence 0000 00000000011123567899999999999999999999999999999999 7
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Q 007395 351 DYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVK 430 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~ 430 (605)
.+..+++..+++++.+.++.++..++..+|.....+++|..++..++.++++|.|+.|||+|||+.||||.||+++++..
T Consensus 279 ~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~ 358 (842)
T KOG1870|consen 279 LYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVS 358 (842)
T ss_pred hhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccC
Confidence 77777999999999999999999999999999877999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCCCCCeeeeeccceeEeecCCCCCceeeEEEE
Q 007395 431 QKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTV 510 (605)
Q Consensus 431 ~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~~~~~~~ 510 (605)
.+||++.+|..++++.+.+.+.|..|..+++|+|+++|.|+++|++.|+.|++.++++|||.+|+||+|....+.+.+++
T Consensus 359 ~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~ 438 (842)
T KOG1870|consen 359 SKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTV 438 (842)
T ss_pred CcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCcccccCcCCCCeEEEEEecC
Q 007395 511 FYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR 588 (605)
Q Consensus 511 ~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~d~~~~~e~~~ 588 (605)
++.++..+|..+++.+.+.+++.+|.++|.+.+++. ..++..++++.++|+++|..+...+..|...|.+++||++.
T Consensus 439 ~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 515 (842)
T KOG1870|consen 439 PHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGV 515 (842)
T ss_pred ecCCCCCChhheeeeccccchHHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeeccc
Confidence 999999999999999999999999999999999999 99999999999999999995556778899999999999994
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.4e-33 Score=270.16 Aligned_cols=190 Identities=38% Similarity=0.524 Sum_probs=161.7
Q ss_pred CCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHH-HHHHHHHHHHHHhcCCCcccchHHHH
Q 007395 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGE-LALAFGDLLRKLWSSGRAAVAPRAFK 393 (605)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~-l~~~l~~L~~~l~~~~~~~v~P~~f~ 393 (605)
...+.||.|.|||||||++||||+.+..|...|. ..|.+.+|.++|.|..|. .+..|..|...+-.-+..+|+|..|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 3468999999999999999999999999999777 789999999999999995 45566667776666667889999999
Q ss_pred HHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhc-CCcccccCCCC-----CChhhhhhHhhhccccCCCcccccc
Q 007395 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ-KPYIEMKDSGG-----RPDEEVANECWKNHKARNDSLIVDV 467 (605)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~-~~~~e~~~~~~-----~~~~~~a~~~w~~~~~~~~s~I~~l 467 (605)
+.++..++.|++.+|||||||+.|+||.|||++|.... +|..+.+|... .+....+.-.|+.|...+.|+|.+.
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 99999999999999999999999999999999987654 34444444321 1222233458999999999999999
Q ss_pred cceEEEeEEecCCCCCeeeeeccceeEeecCCCCCcee
Q 007395 468 FQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRT 505 (605)
Q Consensus 468 F~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~~ 505 (605)
|.||++|+++|..|+++|+++.+|..|++|++......
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~ 265 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLG 265 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchheeec
Confidence 99999999999999999999999999999999876544
No 4
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=5.3e-29 Score=270.78 Aligned_cols=157 Identities=30% Similarity=0.488 Sum_probs=131.3
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCC--CcccchH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPR 390 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~v~P~ 390 (605)
...+|++||.|+||||||||+||||+|+|+||++|+ ..+.... ....++++.+|+.+++++|++. +..++|.
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~ 188 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI-----KDRKSELVKRLSELIRKIWNPRNFKGHVSPH 188 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc-----cCCCcHHHHHHHHHHHHHhccccCCCccCHH
Confidence 467899999999999999999999999999999998 3322111 1124589999999999999875 5789999
Q ss_pred HHHHHHhhhc-CCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccc
Q 007395 391 AFKGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQ 469 (605)
Q Consensus 391 ~f~~~l~~~~-~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~ 469 (605)
.|+.+++... +.|.+++||||||||.+|||.||+++++.. ..+.++|.++|+
T Consensus 189 ~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~ 241 (440)
T cd02669 189 ELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQ 241 (440)
T ss_pred HHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccC
Confidence 9999998764 579999999999999999999999986421 234689999999
Q ss_pred eEEEeEEecCCCC---------------CeeeeeccceeEeecCCCCC
Q 007395 470 GQYKSTLVCPVCS---------------KVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 470 G~~~s~l~C~~C~---------------~~S~~~e~F~~LsL~ip~~~ 502 (605)
|+++++++|..|. ..|.+.+||++|||+||...
T Consensus 242 G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~ 289 (440)
T cd02669 242 GKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPP 289 (440)
T ss_pred ceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCc
Confidence 9999999987654 35788999999999999763
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=7e-30 Score=265.06 Aligned_cols=145 Identities=27% Similarity=0.483 Sum_probs=123.8
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCC--CcccchHHHHHHHhh
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRAFKGKLAR 398 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~v~P~~f~~~l~~ 398 (605)
||.|+||||||||+||||+| .+++.+|+.||..||.+. ..+++|..|+.++++
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999988 368889999999999764 357999999999999
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEec
Q 007395 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (605)
Q Consensus 399 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C 478 (605)
..|.|.+++||||||||.+|||.||+++++..++...+ ....+........++|.++|+|+++++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN------------RKLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc------------ccccccccCCcCCCChhhhCceEEEeeEEe
Confidence 99999999999999999999999999998765433211 011222333456789999999999999999
Q ss_pred CCCCCeeeeeccceeEeecCCCCC
Q 007395 479 PVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 479 ~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
..|++.|.++|+|++|+|+||...
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~~~ 147 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQNT 147 (300)
T ss_pred CCCCCCccccceeEEeccCCCCcC
Confidence 999999999999999999999754
No 6
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-29 Score=263.52 Aligned_cols=212 Identities=25% Similarity=0.422 Sum_probs=167.8
Q ss_pred CCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHH
Q 007395 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (605)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~ 393 (605)
.....+||.|+|||||+||+||||.+||||.+||+ ..|...+.. ...++.++|+..+.........+++|..|+
T Consensus 104 ~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~-----~~~C~lc~~q~hi~~A~~~~g~pisP~~i~ 178 (545)
T KOG1865|consen 104 PAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHR-----AKFCMLCTFQAHITRALHNPGHPISPSQIL 178 (545)
T ss_pred cccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccc-----cCeeeehHHHHHHHHHhcCCCCccChHHHH
Confidence 34567999999999999999999999999999999 777776553 245899999998887777766799999999
Q ss_pred HHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEE
Q 007395 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (605)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~ 473 (605)
..|..+..+|..+.|+||||||++++|.|+.-.-...++ .....++.++|+.+|||.++
T Consensus 179 s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~---------------------~~~~sq~ttlv~~iFGG~Lr 237 (545)
T KOG1865|consen 179 SNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ---------------------VDPRSQDTTLVHQIFGGYLR 237 (545)
T ss_pred HhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc---------------------CCcccccceehhhhhccchh
Confidence 999999999999999999999999999999775311110 11223457899999999999
Q ss_pred eEEecCCCCCeeeeeccceeEeecCCCCCceeeEEEEE----ecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCC
Q 007395 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVF----YANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDE 549 (605)
Q Consensus 474 s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 549 (605)
|+++|..|.++|.++|+.++|+|.|-......-.+.-| .+|| .+.++|++|.+...|-++.+-.. ..
T Consensus 238 S~vkC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~g--------en~Y~C~~Ck~~v~A~K~lti~r-aP 308 (545)
T KOG1865|consen 238 SQIKCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDG--------ENAYHCGRCKQKVPASKQLTIHR-AP 308 (545)
T ss_pred hceecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCC--------ccccccchhhhhCcccceeeeec-CC
Confidence 99999999999999999999999997333221111111 1333 45678999999888876665554 78
Q ss_pred cEEEEEEECCce
Q 007395 550 GLLLAEVYNHQI 561 (605)
Q Consensus 550 ~~~~~e~~~~~~ 561 (605)
.++...+++...
T Consensus 309 nVLTi~LKRF~~ 320 (545)
T KOG1865|consen 309 NVLTLHLKRFSN 320 (545)
T ss_pred ceEEEeeehhcc
Confidence 888888776654
No 7
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=3.4e-28 Score=253.77 Aligned_cols=149 Identities=28% Similarity=0.427 Sum_probs=125.4
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHh-cccccccCCCCCCChHHHHHHHHHHHHHHhcCC--------------Cc
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------------RA 385 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------------~~ 385 (605)
||.|+||||||||+||||+|+|+||++|+. ..... .......++++++|++|+..|++.. ..
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 77 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP---SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQV 77 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC---CCcCCccccHHHHHHHHHHHhcCCCcCCCcccccccccccc
Confidence 899999999999999999999999999973 11111 1111234579999999999998743 24
Q ss_pred ccchHHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccc
Q 007395 386 AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIV 465 (605)
Q Consensus 386 ~v~P~~f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~ 465 (605)
+++|..|+.+++..+|.|.++.|||||||+.+|||.||+++... ..+.+.
T Consensus 78 ~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~ 127 (311)
T cd02658 78 GIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPN 127 (311)
T ss_pred ccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCch
Confidence 68999999999999999999999999999999999999987421 123477
Q ss_pred cccceEEEeEEecCCCCCeeeeeccceeEeecCCCCC
Q 007395 466 DVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 466 ~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
++|+|.++++++|..|++.+.+.|+|..|+|+||...
T Consensus 128 ~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~ 164 (311)
T cd02658 128 DLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDE 164 (311)
T ss_pred hheEEEeeEEEEcCCCCCEEEeecceeEEeeeccccc
Confidence 9999999999999999999999999999999999654
No 8
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=4.3e-28 Score=254.83 Aligned_cols=159 Identities=33% Similarity=0.587 Sum_probs=131.3
Q ss_pred CccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHh-cCCCcccchHHHHHHHh
Q 007395 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLA 397 (605)
Q Consensus 320 ~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~v~P~~f~~~l~ 397 (605)
+||.|+||||||||+||||+|+|+|+++++ ..+....... ....+++++|+.|+..|+ ......++|..|+.+++
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~ 77 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSC---SPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSW 77 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccC---CccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 599999999999999999999999999998 3333211111 123579999999999995 44567889999999999
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEe
Q 007395 398 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477 (605)
Q Consensus 398 ~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~ 477 (605)
+..+.|.++.|||||||+.+|||.||+++....+.+ .......++|.++|+|++.++++
T Consensus 78 ~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~ 136 (328)
T cd02660 78 KHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVT 136 (328)
T ss_pred hhchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeE
Confidence 988999999999999999999999999986543311 00123357899999999999999
Q ss_pred cCCCCCeeeeeccceeEeecCCCCC
Q 007395 478 CPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 478 C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
|..|++.+.+.|+|+.|+|+||...
T Consensus 137 C~~C~~~s~~~e~f~~lsl~i~~~~ 161 (328)
T cd02660 137 CQRCGGVSTTVDPFLDLSLDIPNKS 161 (328)
T ss_pred cCCCCCccceecccceeeeeccccc
Confidence 9999999999999999999999753
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.4e-27 Score=248.38 Aligned_cols=148 Identities=28% Similarity=0.429 Sum_probs=126.9
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhh
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARF 399 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~ 399 (605)
||.|+||||||||+||||+|+|+|+++++ ...... +......+++.+|+.|+..|+.+. .+++|..|+..+++.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~ 75 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR----GANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMA 75 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc----ccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHH
Confidence 89999999999999999999999999998 222111 122235689999999999998765 589999999999999
Q ss_pred cCCCC------CCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEE
Q 007395 400 APQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (605)
Q Consensus 400 ~~~F~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~ 473 (605)
.|.|. +++|||||||+.+|||.||++++.. ..+.++|.++|+|++.
T Consensus 76 ~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~ 127 (305)
T cd02657 76 FPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELE 127 (305)
T ss_pred CcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEE
Confidence 99994 5699999999999999999997431 1235689999999999
Q ss_pred eEEecCCCC-CeeeeeccceeEeecCCCC
Q 007395 474 STLVCPVCS-KVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 474 s~l~C~~C~-~~S~~~e~F~~LsL~ip~~ 501 (605)
++++|..|+ +.+.++|+|+.|+|+||..
T Consensus 128 ~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~ 156 (305)
T cd02657 128 TKMKCTESPDEEEVSTESEYKLQCHISIT 156 (305)
T ss_pred EEEEcCCCCCCCccccccceEEEeecCCC
Confidence 999999999 8999999999999999975
No 10
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.5e-27 Score=249.74 Aligned_cols=144 Identities=28% Similarity=0.433 Sum_probs=117.9
Q ss_pred cCCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHH
Q 007395 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (605)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f 392 (605)
+....+++||.|+||||||||+||||+|+|+|++++.... . .......+ ..+..+++.++.......+|..|
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-~------~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-S------LISSVEQL-QSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-c------ccCcHHHH-HHHHHHHHHHHhhcccccCHHHH
Confidence 4567899999999999999999999999999999986221 0 10111122 22233445566655556789999
Q ss_pred HHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEE
Q 007395 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (605)
Q Consensus 393 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~ 472 (605)
+.++++.+|.|.++.||||||||.+|||.||+ +|.++|+|++
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~~ 131 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQL 131 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceEE
Confidence 99999999999999999999999999999983 3678999999
Q ss_pred EeEEecCCCCCeeeeeccceeEeecCCCCC
Q 007395 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 473 ~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
+++++|.+|++.|.++|+|++|+||||...
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~ 161 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESE 161 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCc
Confidence 999999999999999999999999999763
No 11
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=1.2e-27 Score=250.92 Aligned_cols=150 Identities=25% Similarity=0.397 Sum_probs=123.4
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHh-cccccccCCC----CCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHH
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTEN----PLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~-~~~~~~~~~~----~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~ 395 (605)
||.|+||||||||+||||+|+|+|+++++. .........+ ......+++.+|+.|+..||.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999983 2221111110 00112479999999999999988899999999998
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeE
Q 007395 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (605)
Q Consensus 396 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~ 475 (605)
++ |..++|||||||+.+|||.||+++..... ....++|.++|+|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67889999999999999999999853210 012467999999999999
Q ss_pred EecCCCCCeeeeeccceeEeecCCCC
Q 007395 476 LVCPVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 476 l~C~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
++|..|++.+.+.|+|+.|+|+||..
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~~ 155 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKGH 155 (324)
T ss_pred EEeCCCCCccccccccEEEEEEeccc
Confidence 99999999999999999999999864
No 12
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-27 Score=258.32 Aligned_cols=190 Identities=42% Similarity=0.650 Sum_probs=156.7
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcC-CCcccchHH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSS-GRAAVAPRA 391 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~-~~~~v~P~~ 391 (605)
....+.+||.|+|||||||++||||+.|+.|+..++ ..|.+.++.++..+ ...+..++..++..+|.. ...++.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFG-AEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCccc-chhHHHHHHHhhhhhccCCCceecCcHH
Confidence 456789999999999999999999999999998888 78888777444443 446778888888887766 667899999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcc-cccC-----CCCCChhhhhhHhhhccccCCCcccc
Q 007395 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI-EMKD-----SGGRPDEEVANECWKNHKARNDSLIV 465 (605)
Q Consensus 392 f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~-e~~~-----~~~~~~~~~a~~~w~~~~~~~~s~I~ 465 (605)
|+..+.++.|.|+++.|||||||+.+++|.||++++.....+.. .... ..-.++...+...|..+....++.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 99999999999999999999999999999999999987542111 1110 01123444556678888887788899
Q ss_pred cccceEEEeEEecCCCCCeeeeeccceeEeecCCCCCce
Q 007395 466 DVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504 (605)
Q Consensus 466 ~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~ 504 (605)
++|.||+++.++|..||+.|.+|++|.+|+||||.....
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~ 493 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA 493 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccccccc
Confidence 999999999999999999999999999999999987654
No 13
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=1.4e-26 Score=240.25 Aligned_cols=160 Identities=34% Similarity=0.558 Sum_probs=133.2
Q ss_pred CCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHh
Q 007395 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 397 (605)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~ 397 (605)
++||.|+||||||||+||+|+|+|+|+++++ ..+..... ....++.++|+.++..++.++...++|..|..++.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~ 75 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC-----NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLK 75 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc-----CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHH
Confidence 5899999999999999999999999999997 33322111 12347899999999999888788999999999999
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEe
Q 007395 398 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477 (605)
Q Consensus 398 ~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~ 477 (605)
...+.|..+.||||+||+.+|||.||+++......... ........++|.++|+|+++++++
T Consensus 76 ~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~ 137 (304)
T cd02661 76 QISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVK 137 (304)
T ss_pred HHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEE
Confidence 99999999999999999999999999887543321100 011223467899999999999999
Q ss_pred cCCCCCeeeeeccceeEeecCCCC
Q 007395 478 CPVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 478 C~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
|..|++.+.++|+|+.|+|+||..
T Consensus 138 C~~C~~~s~~~e~~~~l~l~i~~~ 161 (304)
T cd02661 138 CLNCKHVSNTYDPFLDLSLDIKGA 161 (304)
T ss_pred eCCCCCCcCccccceeeeeecCCC
Confidence 999999999999999999999965
No 14
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2.1e-26 Score=241.04 Aligned_cols=158 Identities=27% Similarity=0.376 Sum_probs=122.3
Q ss_pred CCccccCCCCcchhHHHHHHhCChhHHHHHHhcc--ccccc----CCCCCC----------ChHHHHHHHHHHHHHHhcC
Q 007395 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDY--SDEIN----TENPLG----------MHGELALAFGDLLRKLWSS 382 (605)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~--~~~~~----~~~~~~----------~~~~l~~~l~~L~~~l~~~ 382 (605)
|+||.|+||||||||+||||+++|+||++++..- ..+.. .....+ ...+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999998211 11000 000000 1226999999999999998
Q ss_pred CCcccchHHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCc
Q 007395 383 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 462 (605)
Q Consensus 383 ~~~~v~P~~f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s 462 (605)
...++.|..|+..++. .|||||||+..||+.||++++.....+. . ++ ........+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~----~----~~--------~~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFA----G----PD--------TEDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCcccccc----C----cc--------cccccchhh
Confidence 8899999999987652 9999999999999999999864332110 0 00 000123467
Q ss_pred ccccccceEEEeEEecCCCC---CeeeeeccceeEeecCCC
Q 007395 463 LIVDVFQGQYKSTLVCPVCS---KVSITFDPFMYLTLPLPS 500 (605)
Q Consensus 463 ~I~~lF~G~~~s~l~C~~C~---~~S~~~e~F~~LsL~ip~ 500 (605)
+|.++|+|+++++++|..|+ ..+.+.|+|++|+|+|+.
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~ 177 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGK 177 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCc
Confidence 89999999999999999997 789999999999999986
No 15
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=5.8e-26 Score=233.26 Aligned_cols=106 Identities=45% Similarity=0.882 Sum_probs=98.8
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhc
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~ 400 (605)
||.|+||||||||+||||+|+|+|+++++. +|..|+..+++..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999863 7888999999889
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCC
Q 007395 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480 (605)
Q Consensus 401 ~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~ 480 (605)
|.|.+++||||||||.+|||.|| ++|.++|+|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 1377899999999999999
Q ss_pred CCCeeeeeccceeEeecCCCC
Q 007395 481 CSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 481 C~~~S~~~e~F~~LsL~ip~~ 501 (605)
|++.|.+.|+|+.|+||++..
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~ 106 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDE 106 (279)
T ss_pred CCCEeCccccceEEecCCCcc
Confidence 999999999999999998753
No 16
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=8.9e-25 Score=229.47 Aligned_cols=133 Identities=35% Similarity=0.511 Sum_probs=111.4
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHH-HHHHHhhh
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA-FKGKLARF 399 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~-f~~~l~~~ 399 (605)
||.|+||||||||+||||+|+|+||++++........ ....+..++..++..|..+...++.|.. |+.++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~------~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLG------DSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccC------CcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 8999999999999999999999999999832211111 1235778888888887666667777876 666543
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecC
Q 007395 400 APQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 479 (605)
Q Consensus 400 ~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~ 479 (605)
.+.|..++|||||||+.+|||.|+. +|.++|+|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~~--------------------------------------~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLHT--------------------------------------LIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHH--------------------------------------HHHhhCcEEeEeEEEcC
Confidence 4789999999999999999999981 37789999999999999
Q ss_pred CCCCeeeeeccceeEeecCC
Q 007395 480 VCSKVSITFDPFMYLTLPLP 499 (605)
Q Consensus 480 ~C~~~S~~~e~F~~LsL~ip 499 (605)
.|++.+.+.|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP 134 (327)
T ss_pred CCCCEecccccceeeecCCC
Confidence 99999999999999999999
No 17
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=1.4e-24 Score=228.87 Aligned_cols=149 Identities=27% Similarity=0.394 Sum_probs=119.9
Q ss_pred CCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHh
Q 007395 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 397 (605)
Q Consensus 318 g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~ 397 (605)
|++||.|+||||||||+||||+|+|+|+++++...... .. ....++..+|+.|+..|..+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~--~~---~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE--DD---DDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc--cC---cccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 68999999999999999999999999999998431110 01 12346899999999999877666666665542222
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEe
Q 007395 398 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477 (605)
Q Consensus 398 ~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~ 477 (605)
...+.|..+.|||||||+.+||+.|++++... ...++|.++|+|.+.++++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 22356888999999999999999999887421 1235789999999999999
Q ss_pred cCCCCCeeeeeccceeEeecCCC
Q 007395 478 CPVCSKVSITFDPFMYLTLPLPS 500 (605)
Q Consensus 478 C~~C~~~S~~~e~F~~LsL~ip~ 500 (605)
|..|++.+.+.|+|+.|+|++|.
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~ 149 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKG 149 (334)
T ss_pred ecCCCceecccccceEEEEEcCC
Confidence 99999999999999999999985
No 18
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.88 E-value=5e-23 Score=177.84 Aligned_cols=95 Identities=41% Similarity=0.952 Sum_probs=63.4
Q ss_pred CCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCC---CCCcccccccccCC
Q 007395 43 GNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSS---EGDDLEVRRNLEEG 119 (605)
Q Consensus 43 g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll~~~~~~~---~~~~~~Lk~~L~e~ 119 (605)
|++|||||++||++|++|+.+....... ......+||||||++|++...... ...+..||++|.++
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~-----------~~~~~~~pGpIdN~~L~~~~~~~~~~~~~~~~~Lk~~l~~~ 69 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNES-----------DPDSSPRPGPIDNSDLLDEDNSQLQFPPPENYRLKPNLQEG 69 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTT-----------TT-GGG---SB-GGGGECCTTT---------TEE-SS--CT
T ss_pred CCEEEEECHHHHHHHHHHhCCCCccccc-----------ccccCCCCCCEeCHHHhCCCCcccccchhhhhhccccccCC
Confidence 8999999999999999999886554211 111245699999999999843210 02346999999999
Q ss_pred CcEEEeCHHHHHHHHHHhcCCCCcceeee
Q 007395 120 QDYVLVPQQVWEKLFCWYKGGPALPRKMI 148 (605)
Q Consensus 120 ~Df~iVp~~vW~~L~~wYGggp~I~R~vi 148 (605)
+||++||+++|++|.+||||||+|+|.|+
T Consensus 70 ~Dy~~v~~~~W~~l~~~Ygggp~I~R~vi 98 (99)
T PF06337_consen 70 VDYELVPEEVWDYLHSWYGGGPEIKRQVI 98 (99)
T ss_dssp TTEEEEEHHHHHHHHHHH-T----EEEEE
T ss_pred CCEEEECHHHHHHHHHHcCCCCcEEEEee
Confidence 99999999999999999999999999997
No 19
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.88 E-value=7.6e-23 Score=206.79 Aligned_cols=151 Identities=40% Similarity=0.737 Sum_probs=123.6
Q ss_pred CCccccCCCCcchhHHHHHHhCChhHHHHHHhc-ccccccCCCCCCChHHHHHHHHHHHHHHhcC--CCcccchHHHHHH
Q 007395 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS--GRAAVAPRAFKGK 395 (605)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~v~P~~f~~~ 395 (605)
++||.|.||||||||+||||+++|+|++++... +....+..++.....+++.+|+.|+..|+.. ....+.|..|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999832 2222233444445568999999999999988 6789999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeE
Q 007395 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (605)
Q Consensus 396 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~ 475 (605)
++...+.|..+.||||+|||..||+.|++++..... ...|........+++.++|+|++.+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998754321 22345555667889999999999999
Q ss_pred EecCCCCCeeee
Q 007395 476 LVCPVCSKVSIT 487 (605)
Q Consensus 476 l~C~~C~~~S~~ 487 (605)
+.|..|+.....
T Consensus 143 ~~c~~c~~~~~~ 154 (269)
T PF00443_consen 143 IKCSSCKNSQSS 154 (269)
T ss_dssp EEETTTTCEEEE
T ss_pred cccccccccccc
Confidence 999999988533
No 20
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.3e-23 Score=219.14 Aligned_cols=180 Identities=32% Similarity=0.514 Sum_probs=123.0
Q ss_pred CCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccc---c--CCCC-------CCChHHHHHHHHHHHHHHhc
Q 007395 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEI---N--TENP-------LGMHGELALAFGDLLRKLWS 381 (605)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~---~--~~~~-------~~~~~~l~~~l~~L~~~l~~ 381 (605)
.....+||.|||||||+|||||+|+.++.|++.|. ..+.... . ...+ +...|.++.+|.. +.+|..
T Consensus 201 ~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e 279 (877)
T KOG1873|consen 201 RGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSE 279 (877)
T ss_pred ccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhh
Confidence 44567899999999999999999999999999998 4443211 0 0111 1235678888888 556777
Q ss_pred CCCcccchHHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHH-HHhhhcCCcccccCCCCCCh-----hhhhhHhhhc
Q 007395 382 SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHED-LNRVKQKPYIEMKDSGGRPD-----EEVANECWKN 455 (605)
Q Consensus 382 ~~~~~v~P~~f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~ee-l~~~~~~~~~e~~~~~~~~~-----~~~a~~~w~~ 455 (605)
+..+.+.|+.|...+++.+|+|.||+||||||+|+.|||.|..| +.+.++. .. ....+... .+-....-..
T Consensus 280 ~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~-Il--~~fG~~t~~l~scle~~q~sKvY 356 (877)
T KOG1873|consen 280 TTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKN-IL--SNFGGETSSLVSCLECGQKSKVY 356 (877)
T ss_pred ccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHh-HH--HhhCccccchhhhhhccchhhcc
Confidence 88899999999999999999999999999999999999999855 4444332 00 00011100 0000000000
Q ss_pred cc-cCCCcccccccceEEEeEEecCCCCCeeeeeccceeEeecCC
Q 007395 456 HK-ARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLP 499 (605)
Q Consensus 456 ~~-~~~~s~I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip 499 (605)
.. ..-..++-..|.|-+.+++.|..|. .+.+.+.|.+.+|||-
T Consensus 357 e~f~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~ 400 (877)
T KOG1873|consen 357 EPFKDLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVL 400 (877)
T ss_pred cccccCCcccccccCCCcccchhhhccc-eeccchhhcccccccc
Confidence 00 1112344567888888888888887 6667788888888873
No 21
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-22 Score=214.97 Aligned_cols=154 Identities=28% Similarity=0.488 Sum_probs=129.7
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCC---------
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGR--------- 384 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--------- 384 (605)
..++|++||.|+||+||||||+|+|++++.|...++... ......+.....++.+++.+|.+.|.++..
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~--~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQE--RIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhcccc--ceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 578999999999999999999999999999999887331 111222233356899999999999987642
Q ss_pred -cccchHHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcc
Q 007395 385 -AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSL 463 (605)
Q Consensus 385 -~~v~P~~f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~ 463 (605)
..++|..|+..+++-.|.|+.++||||||||.|||+.|.+..... -..
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~-------------------------------~~n 428 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS-------------------------------LPN 428 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-------------------------------CCC
Confidence 368999999999999999999999999999999999997642100 023
Q ss_pred cccccceEEEeEEecCCCCCeeeeeccceeEeecCCC
Q 007395 464 IVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPS 500 (605)
Q Consensus 464 I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~ 500 (605)
+.++|...+..++.|..|++++.++++-+.+.||||.
T Consensus 429 ptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 429 PTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred HHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 7899999999999999999999999999999999996
No 22
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.85 E-value=4.1e-21 Score=161.36 Aligned_cols=83 Identities=48% Similarity=1.112 Sum_probs=73.7
Q ss_pred CCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccccCCCCCCCCCcccccccccCCC
Q 007395 41 KEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120 (605)
Q Consensus 41 ~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll~~~~~~~~~~~~~Lk~~L~e~~ 120 (605)
++|++||+||.+||++|++|+... ....||||||+.|++.. .+..||+++.++.
T Consensus 2 ~~g~~~yiIs~~W~~~~~~~~~~~--------------------~~~~pGpIdN~~l~~~~------~~~~lk~~l~~~~ 55 (86)
T smart00695 2 REGDTWYLISTRWYRQWADFVEGK--------------------DGKDPGPIDNSGILCSH------GGPRLKEHLVEGE 55 (86)
T ss_pred CCCCEEEEEeHHHHHHHHHHhCCC--------------------CCCCCCCCCcHHhcCCC------CCcccccccccCC
Confidence 689999999999999999998522 34689999999999872 2358999999999
Q ss_pred cEEEeCHHHHHHHHHHhcCCC-Ccceeeee
Q 007395 121 DYVLVPQQVWEKLFCWYKGGP-ALPRKMIS 149 (605)
Q Consensus 121 Df~iVp~~vW~~L~~wYGggp-~I~R~vi~ 149 (605)
||++||+++|++|.+|||||| +|.|.|+.
T Consensus 56 dy~~V~~~vW~~l~~~YGggp~~i~R~~i~ 85 (86)
T smart00695 56 DYVLIPEELWNKLVSWYGGGPGPIPRKVVC 85 (86)
T ss_pred CEEEeCHHHHHHHHHHHCCCCccceEEeec
Confidence 999999999999999999999 59999985
No 23
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.84 E-value=2.8e-21 Score=194.09 Aligned_cols=90 Identities=42% Similarity=0.741 Sum_probs=81.2
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhc
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~ 400 (605)
||.|+||||||||+||+|+|+|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999986210
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCC
Q 007395 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480 (605)
Q Consensus 401 ~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~ 480 (605)
+||||||||.+||+.|+. .+.++|.|++.++++|..
T Consensus 33 ------~QqDa~EFl~~ll~~l~~--------------------------------------~i~~~F~g~~~~~i~C~~ 68 (240)
T cd02662 33 ------EQQDAHELFQVLLETLEQ--------------------------------------LLKFPFDGLLASRIVCLQ 68 (240)
T ss_pred ------hhcCHHHHHHHHHHHHHH--------------------------------------hccCccccEEEEEEEeCC
Confidence 899999999999999982 266899999999999999
Q ss_pred CCCeee-eeccceeEeecCCCCC
Q 007395 481 CSKVSI-TFDPFMYLTLPLPSTV 502 (605)
Q Consensus 481 C~~~S~-~~e~F~~LsL~ip~~~ 502 (605)
|++.+. ++|+|++|+|+||...
T Consensus 69 C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 69 CGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred CCCccCcceeeeeeeEecccccC
Confidence 999976 5999999999999764
No 24
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.3e-21 Score=200.92 Aligned_cols=244 Identities=20% Similarity=0.270 Sum_probs=183.0
Q ss_pred ceEEE-eChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCccccccCC
Q 007395 175 QTVIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTG 253 (605)
Q Consensus 175 ~~~i~-vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~~~~~~~ 253 (605)
.+.+. ++..+|...|+.++..++||+|+++|++..+ +++.| |-.+..++|++|.++|| +|+++
T Consensus 14 ~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKG------g~a~d-d~~~~al~iKpn~~lmM---------mGt~e 77 (473)
T KOG1872|consen 14 KYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKG------GLAKD-DVDWGALQIKPNETLMM---------MGTAE 77 (473)
T ss_pred cccceeccCCCchHHHHHHHHHhcCCCccceeEEEec------ccccc-cccccccccCCCCEEEe---------ecccc
Confidence 34444 8899999999999999999999999999843 66765 55788999999999999 77765
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCCCcccccCCCCCCCCCcCCCCCCCCcccccccCCCCCCCccccCCCCcchhH
Q 007395 254 NDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNS 333 (605)
Q Consensus 254 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNS 333 (605)
.. +..|.....++ . +..+.+ .....+.++||.|+|||||||+
T Consensus 78 ~~----~e~p~~~~~~~---------------e-------------d~~e~~------~~~~~~lp~gl~nlgNtcymnr 119 (473)
T KOG1872|consen 78 AG----LEPPSLPPTFI---------------E-------------DSAEQF------ASAALPLPVGLPNLGNTCYMNR 119 (473)
T ss_pred cc----ccCcccCCcch---------------h-------------hhhHHH------HHhhccCCccccchhHHHHhhh
Confidence 42 22232222221 0 000001 0123456789999999999999
Q ss_pred HHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhcCCCCC------CC
Q 007395 334 ALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSG------YN 407 (605)
Q Consensus 334 vLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~~~F~~------~~ 407 (605)
.+|||..+++++..+. .|......+........++.+++.+|+.|.++ .++.|..+...+.+..|+|.- +.
T Consensus 120 tVq~lk~v~el~~~~s-~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~~~g~~~ 196 (473)
T KOG1872|consen 120 TVQCLKGVPELPDALS-LYKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWVEYGIYM 196 (473)
T ss_pred hhhhhhcCccCcchhh-ccchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHhhhhhHH
Confidence 9999999999999875 33322222333333567999999999999776 899999999999999999985 99
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCCCCCeeee
Q 007395 408 QHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSIT 487 (605)
Q Consensus 408 QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~C~~~S~~ 487 (605)
||||.|++..++-.+|+-+......+ +..+.+.++|++++.++..|.+-......
T Consensus 197 qqda~ec~~~~m~~l~~~~~~~~~~~-------------------------~~~~~~d~~f~~~~~~t~~~~e~e~~~~~ 251 (473)
T KOG1872|consen 197 QQDAAECWMEEPGMLTEALTVATEAP-------------------------CLEAEAAAGFGAEFSTTMSCSEGEDEGGG 251 (473)
T ss_pred HHHHhHhHHHhhhheecccccccccc-------------------------chhHHHHHhhccccccceeeccCcccccc
Confidence 99999999999999987653221100 34567889999999999999998776544
Q ss_pred --eccceeEeecCCC
Q 007395 488 --FDPFMYLTLPLPS 500 (605)
Q Consensus 488 --~e~F~~LsL~ip~ 500 (605)
.|.|+.|++-|..
T Consensus 252 ~~~E~~~~L~c~i~~ 266 (473)
T KOG1872|consen 252 AGRELVDQLKCIINK 266 (473)
T ss_pred cccccccccceEEee
Confidence 7888888887754
No 25
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-20 Score=193.43 Aligned_cols=154 Identities=25% Similarity=0.400 Sum_probs=127.3
Q ss_pred CCCC-CCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCC----Ccccc
Q 007395 315 EKGG-LAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSG----RAAVA 388 (605)
Q Consensus 315 ~~~g-~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~----~~~v~ 388 (605)
..++ .+||.|+||+||+||++|.|++...+..-+. ..+...+...+|+ .+|.+++.+|+..|.... ...++
T Consensus 298 ~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~---~~l~CQl~kll~~mk~~p~~~y~ngi~ 374 (749)
T COG5207 298 SVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPL---ECLFCQLMKLLSKMKETPDNEYVNGIS 374 (749)
T ss_pred cCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCc---hhHHHHHHHHHhhccCCCCccccCCcC
Confidence 3444 8999999999999999999999988887766 3333333344553 489999999999887653 34689
Q ss_pred hHHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCccccccc
Q 007395 389 PRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVF 468 (605)
Q Consensus 389 P~~f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF 468 (605)
|..|+..+++-.|.|..++||||||||.|||+.|.+...... .+.|.++|
T Consensus 375 p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~------------------------------~~~It~lf 424 (749)
T COG5207 375 PLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYL------------------------------IPPITSLF 424 (749)
T ss_pred hhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhc------------------------------CCCcchhh
Confidence 999999999999999999999999999999999976432222 24588999
Q ss_pred ceEEEeEEecCCCCCeeeeeccceeEeecCCCC
Q 007395 469 QGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 469 ~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
...+..++.|..|+.++.++++...+.+++...
T Consensus 425 ~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n 457 (749)
T COG5207 425 EFEVERRLSCSGCMDVSYSYESMLMICIFLEGN 457 (749)
T ss_pred hhhhcceecccccccccccccceEEEEeecccC
Confidence 999999999999999999999999999998765
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-19 Score=193.96 Aligned_cols=166 Identities=32% Similarity=0.562 Sum_probs=136.1
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCC-CcccchHH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSG-RAAVAPRA 391 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~-~~~v~P~~ 391 (605)
...-++.||.|+|+|||||++||+|.|.+..+...+ ..+..+. +.+ ...++.+++.++++.+|++. ...++|..
T Consensus 156 ~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~--~~~--~~~~l~~~~~~~~~~~~s~~~~~~~sp~~ 231 (492)
T KOG1867|consen 156 TTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEP--SSS--GSSCLVCDLDRLFQALYSGHNRTPYSPFE 231 (492)
T ss_pred eeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCC--CCC--CCcchhhhhhhhhhHhhcCCCCCCcChHH
Confidence 345689999999999999999999999999999888 5555221 111 14589999999999999998 89999999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceE
Q 007395 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (605)
Q Consensus 392 f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~ 471 (605)
+...+++..|.|.||.|||||||+..+++.+|.+...-.+. ..... |. ..-.+++..+|.|+
T Consensus 232 ~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~---~~~~~------------~~---~~c~~iv~~~F~G~ 293 (492)
T KOG1867|consen 232 LLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKS---LIASQ------------SN---KQCPCIVHTIFSGT 293 (492)
T ss_pred HHHHHHHhCcccccccccchHHHHHHhcccccccccccccc---ccccc------------CC---cccccccceeecce
Confidence 99999999999999999999999999999999886111110 00000 00 02367899999999
Q ss_pred EEeEEecCCCCCeeeeeccceeEeecCCCC
Q 007395 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 472 ~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
+.+.++|..|+..|.+++||++|+|.||..
T Consensus 294 L~~~v~c~~c~~~S~~~dpf~disL~i~~~ 323 (492)
T KOG1867|consen 294 LQSDVTCQTCGSKSTTYDPFMDISLDIPDQ 323 (492)
T ss_pred eccceeehhhcceeeeccCccceeeecchh
Confidence 999999999999999999999999999854
No 27
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.67 E-value=9.1e-17 Score=161.21 Aligned_cols=106 Identities=23% Similarity=0.368 Sum_probs=82.2
Q ss_pred cccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhcC
Q 007395 322 LQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAP 401 (605)
Q Consensus 322 L~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~~ 401 (605)
|.|.||.||+||++|+|.+ +++.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------i~~~~~ 26 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS-------------------------------------------------------IGKINT 26 (245)
T ss_pred ceecCCeeeehhHHHHHHH-------------------------------------------------------Hhhhhh
Confidence 7899999999999999864 122346
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCCC
Q 007395 402 QFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVC 481 (605)
Q Consensus 402 ~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~C 481 (605)
.|.+++||||||||++|||.||++++....... ..+. ........++|+|+++++++|..|
T Consensus 27 ~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~--~~~~-----------------~~~~~~~~~~F~~~l~s~i~C~~C 87 (245)
T cd02673 27 EFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVP--PSNI-----------------EIKRLNPLEAFKYTIESSYVCIGC 87 (245)
T ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHhhcccCC--CCcc-----------------cccccCHhHheeeEEEeEEEecCC
Confidence 799999999999999999999998754321110 0000 000112457899999999999999
Q ss_pred CCeeeeeccceeEeecCCCC
Q 007395 482 SKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 482 ~~~S~~~e~F~~LsL~ip~~ 501 (605)
+++|.++|+|++|+|+||..
T Consensus 88 ~~~s~~~e~~~~L~L~i~~~ 107 (245)
T cd02673 88 SFEENVSDVGNFLDVSMIDN 107 (245)
T ss_pred CCeeeeccccceeccccccC
Confidence 99999999999999999975
No 28
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.67 E-value=3.7e-17 Score=162.85 Aligned_cols=78 Identities=67% Similarity=1.166 Sum_probs=73.6
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhc
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~ 400 (605)
||.|.||||||||+||||++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCC
Q 007395 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480 (605)
Q Consensus 401 ~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~ 480 (605)
.||||+||+.+||+.|+ ++|.++|+|++.++++|..
T Consensus 21 ------~QqDa~Ef~~~ll~~l~--------------------------------------~~i~~~F~~~~~~~~~C~~ 56 (230)
T cd02674 21 ------DQQDAQEFLLFLLDGLH--------------------------------------SIIVDLFQGQLKSRLTCLT 56 (230)
T ss_pred ------hhhhHHHHHHHHHHHHh--------------------------------------hhHHheeCCEEeCcEEcCC
Confidence 89999999999999998 1378899999999999999
Q ss_pred CCCeeeeeccceeEeecCCCCC
Q 007395 481 CSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 481 C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
|++.+.+.|+|+.|+|+||...
T Consensus 57 C~~~~~~~e~~~~l~l~ip~~~ 78 (230)
T cd02674 57 CGKTSTTFEPFTYLSLPIPSGS 78 (230)
T ss_pred CcCCcceecceeEEEEeccccc
Confidence 9999999999999999999754
No 29
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.2e-17 Score=191.16 Aligned_cols=152 Identities=28% Similarity=0.349 Sum_probs=126.1
Q ss_pred CCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHH
Q 007395 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKL 396 (605)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l 396 (605)
..++||.|+||||||||+||+|++++.||+.+...-. ..........+..+|+.||..|..+..++|.|..+...+
T Consensus 168 g~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~ 243 (1093)
T KOG1863|consen 168 GFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSL 243 (1093)
T ss_pred CCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhh
Confidence 3449999999999999999999999999999872211 011111234599999999999999888899999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEE
Q 007395 397 ARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTL 476 (605)
Q Consensus 397 ~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l 476 (605)
+... ..+++|||+|||++.|+|.|+..+..... ...|.++|.|.+.+.+
T Consensus 244 ~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~~~~i 292 (1093)
T KOG1863|consen 244 GWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKMKSVI 292 (1093)
T ss_pred hccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCcceEE
Confidence 8765 55689999999999999999987643321 2358899999999999
Q ss_pred ecCCCCCeeeeeccceeEeecCCCCCc
Q 007395 477 VCPVCSKVSITFDPFMYLTLPLPSTVT 503 (605)
Q Consensus 477 ~C~~C~~~S~~~e~F~~LsL~ip~~~~ 503 (605)
.|..|+..+.+.|.|++|.|++....+
T Consensus 293 ~c~~~~~~s~r~e~f~d~ql~~~g~~n 319 (1093)
T KOG1863|consen 293 KCIDVDFESSRSESFLDLQLNGKGVKN 319 (1093)
T ss_pred EEEeeeeeccccccccCccccccchhh
Confidence 999999999999999999999976554
No 30
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.64 E-value=9.5e-16 Score=154.72 Aligned_cols=155 Identities=33% Similarity=0.530 Sum_probs=127.1
Q ss_pred ccCCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCC--Ccccc
Q 007395 312 KKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVA 388 (605)
Q Consensus 312 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~v~ 388 (605)
...+.+|.+||.|+-++-|.|+++|+|+|.+++|+||+ .. |+....+.+...|+.+++++|+.+ +..++
T Consensus 127 ~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~--------n~~d~~~~lv~rl~~l~rklw~~r~fk~hvS 198 (442)
T KOG2026|consen 127 GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEE--------NYFDNLTELVQRLGELIRKLWNPRNFKGHVS 198 (442)
T ss_pred CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhcccc--------cccchhHHHHHHHHHHHHHhcChhhhcccCC
Confidence 34678999999999999999999999999999999998 21 122235689999999999999976 57899
Q ss_pred hHHHHHHHhhhc-CCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccc
Q 007395 389 PRAFKGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDV 467 (605)
Q Consensus 389 P~~f~~~l~~~~-~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~l 467 (605)
|.+|..++.... ..|..++|-|+-|||+|||+.||.+|+..++ ..|||+..
T Consensus 199 phe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~ 250 (442)
T KOG2026|consen 199 PHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKS 250 (442)
T ss_pred HHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHh
Confidence 999999997643 5799999999999999999999999865442 25899999
Q ss_pred cceEEEeEEecCC----CCCeeeeeccceeEeecCCCCC
Q 007395 468 FQGQYKSTLVCPV----CSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 468 F~G~~~s~l~C~~----C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
|+|.++-.-+=.. -....+..-||+.|+|++|...
T Consensus 251 fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~p 289 (442)
T KOG2026|consen 251 FQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPP 289 (442)
T ss_pred hcceEEeeeeccccccccccceEEEEeeEEEEecCCCCC
Confidence 9999986554333 2233466779999999999765
No 31
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.3e-17 Score=173.75 Aligned_cols=153 Identities=26% Similarity=0.420 Sum_probs=126.3
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~ 393 (605)
+...|++||+|.|.||||||.||+|+.+..||+...+ +..++|.+ ...++.||+++|..|..+ ..+++..+|.
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~-----ipTd~p~g-rdSValaLQr~Fynlq~~-~~PvdTtelt 260 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYG-----IPTDHPRG-RDSVALALQRLFYNLQTG-EEPVDTTELT 260 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhc-----CCCCCCCc-cchHHHHHHHHHHHHhcc-CCCcchHHhh
Confidence 4567999999999999999999999999999998763 33344443 347999999999999765 4899999999
Q ss_pred HHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEE
Q 007395 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (605)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~ 473 (605)
+..+. -.+..++|||.|||-+.|.|.|+..+.... + ..-+..+|-|.++
T Consensus 261 rsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~----V-------------------------Enaln~ifVgkmk 309 (1089)
T COG5077 261 RSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTV----V-------------------------ENALNGIFVGKMK 309 (1089)
T ss_pred hhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCCh----h-------------------------hhHHhHHHHHHhh
Confidence 98875 356788999999999999999987542211 1 1137789999999
Q ss_pred eEEecCCCCCeeeeeccceeEeecCCCCCce
Q 007395 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504 (605)
Q Consensus 474 s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~ 504 (605)
|.+.|-+-.++|.+.|.|++++|++...++.
T Consensus 310 syikCvnvnyEsarvedfwdiqlNvK~~knL 340 (1089)
T COG5077 310 SYIKCVNVNYESARVEDFWDIQLNVKGMKNL 340 (1089)
T ss_pred ceeeEEEechhhhhHHHHHHHHhcccchhhH
Confidence 9999999999999999999999999876543
No 32
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-16 Score=171.35 Aligned_cols=206 Identities=22% Similarity=0.356 Sum_probs=158.2
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCC-CCChHHHHHHHHHHHHHHhcCCCcccchHHH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENP-LGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f 392 (605)
...-+++||.|-|+|||||+++|-|.++|.+++.+...+.. .++| ..-+..+.+.++.+|..|..+.-.++-|..|
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 45668999999999999999999999999999988732222 1111 1123348999999999998888899999999
Q ss_pred HHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEE
Q 007395 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (605)
Q Consensus 393 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~ 472 (605)
.+.++-...-....+||||-||+..|||.+.|.|++... ..+++..|+|.+
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~-----------------------------p~lf~n~f~G~y 217 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGH-----------------------------PQLFSNTFGGSY 217 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCC-----------------------------cHHHHHHhcCcc
Confidence 999877665566789999999999999999999987653 235778999999
Q ss_pred EeEEecCCCCCeeeeeccceeEeecCCCCCceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEE
Q 007395 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (605)
Q Consensus 473 ~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 552 (605)
..+-.|..|-|.-...|+|+.|+|.|. ..+....+.-+.. | ...-+-+.+.|.+|.+.+.-|.+.|-.+ -..++
T Consensus 218 sdqKIC~~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~-g---evlEG~nAYhCeKCdeK~~TvkRt~ik~-LPsvl 291 (944)
T KOG1866|consen 218 SDQKICQGCPHRYECEESFTTLNLDIR-HQNLEESLEQFVK-G---EVLEGANAYHCEKCDEKVDTVKRTCIKK-LPSVL 291 (944)
T ss_pred chhhhhccCCcccCccccceeeeeecc-cchHHHHHHHHHH-H---HHhcCcchhhhhhhhhhhHhHHHHHHhh-CChhh
Confidence 999999999999999999999999998 3333222222211 0 0112455678899999999999988887 44444
Q ss_pred EEEEE
Q 007395 553 LAEVY 557 (605)
Q Consensus 553 ~~e~~ 557 (605)
.+.++
T Consensus 292 ~IqLk 296 (944)
T KOG1866|consen 292 AIQLK 296 (944)
T ss_pred eehhh
Confidence 44443
No 33
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.9e-15 Score=149.27 Aligned_cols=179 Identities=25% Similarity=0.230 Sum_probs=112.6
Q ss_pred CCCCccccCCCCcchhHHHHHHhCChhHHHHHH--hcccccccCCCCCCChHHHHHHHHHHHHHHhcC------------
Q 007395 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL--GDYSDEINTENPLGMHGELALAFGDLLRKLWSS------------ 382 (605)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~------------ 382 (605)
--|+|+.|-||.|||||+||+|..++||.+.+. ..+.... . .....+..++..+.+...+-
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~----~-~~stp~lda~~~~~~df~n~~~~k~~r~N~~~ 100 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTV----K-EGSTPLLDASRPASSDFNNDSDAKLPRKNSLR 100 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCce----e-cccchhHHHHHHHHhhccccchhhhhhhccCC
Confidence 568999999999999999999999999999876 2111111 1 11235666666665554311
Q ss_pred ----------------CCcccchHHHHHHHhhhcCCCC---CCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccC----
Q 007395 383 ----------------GRAAVAPRAFKGKLARFAPQFS---GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKD---- 439 (605)
Q Consensus 383 ----------------~~~~v~P~~f~~~l~~~~~~F~---~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~---- 439 (605)
+..++-|..+...+.. .|.|. .|.|.||.|||.++||.||||+.++.+--.....+
T Consensus 101 ~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t-~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~ 179 (420)
T KOG1871|consen 101 VPEHVVEKSESNKSDLQGDAVKPDPIYLDLLT-MSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPR 179 (420)
T ss_pred ccccccchhhhhhhcccCccccCCchhhhccc-CCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccc
Confidence 0123334333333332 23443 48999999999999999999998765421111111
Q ss_pred ---CCCC--Chhh------hhhHhhhcccc-----------CCCcccccccceEEEeEEecCCCCCeeeeeccceeEeec
Q 007395 440 ---SGGR--PDEE------VANECWKNHKA-----------RNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLP 497 (605)
Q Consensus 440 ---~~~~--~~~~------~a~~~w~~~~~-----------~~~s~I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ 497 (605)
.++. ...+ .....|....+ -..+.|+++|+|+++|++.-+. .+.|.+-+||..|.|+
T Consensus 180 ~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqld 258 (420)
T KOG1871|consen 180 GLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLD 258 (420)
T ss_pred ccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeee
Confidence 0000 1111 11222322111 1257789999999999998666 5677999999999999
Q ss_pred CCCCC
Q 007395 498 LPSTV 502 (605)
Q Consensus 498 ip~~~ 502 (605)
|....
T Consensus 259 iq~~~ 263 (420)
T KOG1871|consen 259 IQSEK 263 (420)
T ss_pred eeccc
Confidence 96544
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.54 E-value=3.2e-14 Score=147.39 Aligned_cols=158 Identities=25% Similarity=0.333 Sum_probs=128.0
Q ss_pred CccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHh-cCCCcccchHHHHHHHhh
Q 007395 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLAR 398 (605)
Q Consensus 320 ~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~v~P~~f~~~l~~ 398 (605)
+||.|.+++||+||+||+|+++|++++.++... +.. ...+|+++++-||+.|- .+......+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~c~------~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--ECP------KEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--CCC------ccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999998333 211 24589999999999998 777788899999999988
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEec
Q 007395 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (605)
Q Consensus 399 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C 478 (605)
......-+.|+|.|+|.+|||+.|+.++............ .......+.|.++|+..+....+|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 7433445679999999999999999998766542211000 011123567999999999999999
Q ss_pred CCCCCeeeeeccceeEeecCCCC
Q 007395 479 PVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 479 ~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
..|++.+.+.++...+.|..|..
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~ 159 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPS 159 (295)
T ss_pred cccCCeEEeecceeeeeccCCCC
Confidence 99999999999999999999873
No 35
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.54 E-value=7.9e-15 Score=144.76 Aligned_cols=94 Identities=24% Similarity=0.389 Sum_probs=77.6
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhc
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~ 400 (605)
||.|.||||++|++.|.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCC
Q 007395 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480 (605)
Q Consensus 401 ~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~ 480 (605)
+|||||||++.|||.|+++++..... +. ...+..++|.++|+|++++++.|
T Consensus 21 ------~QQDa~Ef~~~Lld~Le~~l~~~~~~---------~~------------~~~~~~~~i~~lF~G~~~~~~~~-- 71 (228)
T cd02665 21 ------QQQDVSEFTHLLLDWLEDAFQAAAEA---------IS------------PGEKSKNPMVQLFYGTFLTEGVL-- 71 (228)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcccccc---------cc------------ccccccchHhhceEEEEEEEEEE--
Confidence 79999999999999999998643210 00 01124578999999999988877
Q ss_pred CCCeeeeeccceeEeecCCCCCc
Q 007395 481 CSKVSITFDPFMYLTLPLPSTVT 503 (605)
Q Consensus 481 C~~~S~~~e~F~~LsL~ip~~~~ 503 (605)
|+..|.+.|+|++|+|+|.....
T Consensus 72 ~~~~s~~~E~F~~L~l~i~~~~~ 94 (228)
T cd02665 72 EGKPFCNCETFGQYPLQVNGYGN 94 (228)
T ss_pred CCCcccccCccEEEEEEECCCCC
Confidence 78889999999999999976543
No 36
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.49 E-value=3.1e-14 Score=141.67 Aligned_cols=95 Identities=45% Similarity=0.830 Sum_probs=80.5
Q ss_pred ccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHHhhhc
Q 007395 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (605)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l~~~~ 400 (605)
||.|.|||||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeEEecCC
Q 007395 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480 (605)
Q Consensus 401 ~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~l~C~~ 480 (605)
.||||+|||.++|+.|+.++...... ........+.+.++|+|.+.+++.|..
T Consensus 21 ------~q~Da~E~l~~ll~~l~~~~~~~~~~---------------------~~~~~~~~~~i~~~F~~~~~~~~~c~~ 73 (255)
T cd02257 21 ------EQQDAHEFLLFLLDKLHEELKKSSKR---------------------TSDSSSLKSLIHDLFGGKLESTIVCLE 73 (255)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhccc---------------------ccccccCCchhhhhcccEEeeEEECCC
Confidence 89999999999999999998653321 011122356799999999999999999
Q ss_pred CCCeeeeeccceeEeecCCCCC
Q 007395 481 CSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 481 C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
|+..+.+...+..++|++|...
T Consensus 74 c~~~~~~~~~~~~l~l~~~~~~ 95 (255)
T cd02257 74 CGHESVSTEPELFLSLPLPVKG 95 (255)
T ss_pred CCCCccCcccceeEEeeccCCC
Confidence 9999988889999999998753
No 37
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.29 E-value=7.4e-12 Score=102.87 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=64.3
Q ss_pred EEEEecCC--C-CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 165 LKLIDSRD--N-SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 165 l~i~~~~~--~-~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
|+++.+++ . +..+..+|+.+||..+.+.++++|.| ++.+|||.++..+.+ ++|.+.+.|++|++|..||.|++|.
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEEE
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEEe
Confidence 45666555 2 57889999999999999999999999 888999999998888 8998889999999999999999999
Q ss_pred e-ecCccc
Q 007395 242 Q-VDNGIS 248 (605)
Q Consensus 242 ~-~~g~~~ 248 (605)
+ +||+||
T Consensus 80 rn~DGtWP 87 (88)
T PF14836_consen 80 RNEDGTWP 87 (88)
T ss_dssp --TTS--T
T ss_pred eccCCCCC
Confidence 9 899994
No 38
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.2e-11 Score=132.56 Aligned_cols=238 Identities=20% Similarity=0.260 Sum_probs=156.8
Q ss_pred CCCCCccccCCCCcchh--HHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcC--CCcccchHH
Q 007395 316 KGGLAGLQNLGNTCFMN--SALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSS--GRAAVAPRA 391 (605)
Q Consensus 316 ~~g~~GL~NlGNTCYmN--SvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~v~P~~ 391 (605)
.....|..|.+++|+.| ++.|.+..+..+++... .+.. ......+....+...+..+++..... ....+.|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~ 305 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVL-LYLT--SLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTR 305 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhccccc-chhh--cccchhhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence 45678999999999999 99999998888885543 1111 11122223445555555555544332 235689999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCccccc--CCCCCChhhhhhHhh--hccccCCCcccccc
Q 007395 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMK--DSGGRPDEEVANECW--KNHKARNDSLIVDV 467 (605)
Q Consensus 392 f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~--~~~~~~~~~~a~~~w--~~~~~~~~s~I~~l 467 (605)
|...+++.+..|..++|||||||+.++++.++|.+.+.......... .++|.... .+...| ..+......+++.+
T Consensus 306 ~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~-~~~~~~~~~~~~~~~~~~v~~l 384 (587)
T KOG1864|consen 306 FISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSST-SAASWTNKGHHKSLRENWVSKL 384 (587)
T ss_pred hhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcccc-ccccccccccccccchhHHHHh
Confidence 99999999999999999999999999999999988765432211111 11121111 111111 13444567889999
Q ss_pred cceEEEeEEecCCCCCeeeeeccceeEeecCCCCCceeeE--EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCC
Q 007395 468 FQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMT--VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL 545 (605)
Q Consensus 468 F~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 545 (605)
|.|++..+..|.+|+..+.+.+.|.+++++++.....++. +..+.. .....+.....|..|..++++-... ++
T Consensus 385 f~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~----~e~l~g~nky~c~~c~s~qeae~~l-~~ 459 (587)
T KOG1864|consen 385 FQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSS----TETLSGENKYSCENCCSLQEAERRL-KI 459 (587)
T ss_pred hcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcc----hhhccCCCcccccccCchhhHHHhc-cc
Confidence 9999999999999999999999999999999953222221 111110 0111223334677788888887544 55
Q ss_pred CCCCcEEEEEEECCcee
Q 007395 546 KIDEGLLLAEVYNHQIF 562 (605)
Q Consensus 546 ~~~~~~~~~e~~~~~~~ 562 (605)
.....+++.++.+..+-
T Consensus 460 k~lp~~L~l~Lkrfk~~ 476 (587)
T KOG1864|consen 460 KKLPYVLTLHLKRFKYS 476 (587)
T ss_pred cCCcceeeeehhccccc
Confidence 44777777777665544
No 39
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.04 E-value=6.4e-11 Score=120.63 Aligned_cols=101 Identities=26% Similarity=0.262 Sum_probs=76.0
Q ss_pred CCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHH
Q 007395 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (605)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~ 395 (605)
..+++||.|.|.|||+||+||+|+++|+||.++.. ..... ....+++++++.||..
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~-~~~~~------~~~~~l~~el~~lfs~----------------- 67 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAI-ILVAC------PKESCLLCELGYLFST----------------- 67 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHHHh-hcccC------CcCccHHHHHHHHHHH-----------------
Confidence 34699999999999999999999999999997321 11111 1234899999999911
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEeE
Q 007395 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (605)
Q Consensus 396 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s~ 475 (605)
=.|-|-.+|++.++.+... .+
T Consensus 68 --------------~iq~F~~fll~~i~~~~~~--------------------------------------~~------- 88 (268)
T cd02672 68 --------------LIQNFTRFLLETISQDQLG--------------------------------------TP------- 88 (268)
T ss_pred --------------HHHHHHHHHHHHHHHHhcc--------------------------------------cC-------
Confidence 1156778888888755310 00
Q ss_pred EecCCCCCeeeeeccceeEeecCCCCC
Q 007395 476 LVCPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 476 l~C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
..|++.+.+.++|+.|+||+|...
T Consensus 89 ---~~C~~~s~~~~~~~~LsLpip~~~ 112 (268)
T cd02672 89 ---FSCGTSRNSVSLLYTLSLPLGSTK 112 (268)
T ss_pred ---CCCCceeeccccceeeeeecCccc
Confidence 789999999999999999999643
No 40
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.2e-11 Score=126.70 Aligned_cols=126 Identities=19% Similarity=0.322 Sum_probs=97.1
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~ 393 (605)
..+.|++||+|...|||+|+.+|+|+.+|+|+..+. .+.+.++....+.
T Consensus 82 ~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~y-------------------------------ts~~~~~et~dlt 130 (1203)
T KOG4598|consen 82 ENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCY-------------------------------TSENDSLETKDLT 130 (1203)
T ss_pred cCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhh-------------------------------CCCcccccchhhH
Confidence 457799999999999999999999999999999875 1112233333444
Q ss_pred HHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEE
Q 007395 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (605)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~ 473 (605)
+.++.-. -.-++|||.||+.+.++|+|+-..+ .... ...|++++.|.+.
T Consensus 131 ~sfgw~s--~ea~~qhdiqelcr~mfdalehk~k---------------------------~t~~--~~li~~ly~g~m~ 179 (1203)
T KOG4598|consen 131 QSFGWTS--NEAYDQHDVQELCRLMFDALEHKWK---------------------------GTEH--EKLIQDLYRGTME 179 (1203)
T ss_pred hhcCCCc--chhhhhhhHHHHHHHHHHHHHhhhc---------------------------CchH--HHHHHHHhcchHH
Confidence 4333211 1247999999999999999975432 2211 2479999999999
Q ss_pred eEEecCCCCCeeeeeccceeEeecCCCC
Q 007395 474 STLVCPVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 474 s~l~C~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
.-+.|..|+.++++.|.|++|+|++..-
T Consensus 180 d~v~cl~c~~e~~~~d~fld~pl~v~pf 207 (1203)
T KOG4598|consen 180 DFVACLKCGRESVKTDYFLDLPLAVKPF 207 (1203)
T ss_pred HHHHHHHcCccccccceeecccccccCC
Confidence 9999999999999999999999999643
No 41
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=97.58 E-value=0.00023 Score=57.73 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=52.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+.++..+|+.+|++++.+.+++|+++++|..... .+ ..+.| +.+|.++++.+|+.|+|
T Consensus 10 ~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~--~G-k~l~D-~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 10 QEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKV--KG-KPAED-DVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecc--cC-CcCCC-CcCHHHcCCCCCCEEEE
Confidence 45778999999999999999999999999999996211 12 34555 78999999999999998
No 42
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=97.54 E-value=0.00033 Score=56.32 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=52.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.+++.+|+.+||+++...+|+|.+++|||. .+ ..|.|+..+|+++++.+|..|+|
T Consensus 10 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~-----~G-k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 10 TTFSLDVDPDLELENFKALCEAESGIPASQQQLIY-----NG-RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE-----CC-eEccCCcccHHHcCCCCCCEEEE
Confidence 45789999999999999999999999999999997 23 56776557899999999998887
No 43
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.49 E-value=7.3e-05 Score=84.04 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=106.5
Q ss_pred CCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHH
Q 007395 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKL 396 (605)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l 396 (605)
..++||.-.+-.-|.||+||.|+.+|++|..++.. . +. ...||++.|+-||..|-.+.........|.+++
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-~--C~------~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf 567 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-I--CT------KEFCLLCELGFLFTMLDSSTGDPCQANNFLRAF 567 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-c--cc------hhHHHHHHHHHHHHHHhhhcCCccchhHHHHHH
Confidence 45788988899999999999999999999999832 1 11 235899999999999988877889999999999
Q ss_pred hhhcCCCC-C--CCC-------------ccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCC
Q 007395 397 ARFAPQFS-G--YNQ-------------HDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARN 460 (605)
Q Consensus 397 ~~~~~~F~-~--~~Q-------------qDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~ 460 (605)
+...-.-+ | ..+ |||.-|..-..+. |.++.+...-+..+..+. ...+-..
T Consensus 568 ~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~-~~d~~~~~~~~~s~~~~~-------------~~~~vn~ 633 (1118)
T KOG1275|consen 568 RTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSR-HLDCQDCRGLQQSESVDG-------------ESFKVNY 633 (1118)
T ss_pred hhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhh-hhhHHHhhhhhhhhcccC-------------ceeeecc
Confidence 76421111 1 111 2333222222211 111111000000000000 0111123
Q ss_pred CcccccccceEEEeEEecCCCCCeeeeeccceeEeecCCCCC
Q 007395 461 DSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 461 ~s~I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
.+++.+.|+-.......|-.|+..+++.-....++|..|+..
T Consensus 634 ~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~ 675 (1118)
T KOG1275|consen 634 APVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVL 675 (1118)
T ss_pred hhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCcc
Confidence 467889999999999999999999888778888888888764
No 44
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=97.37 E-value=0.00062 Score=54.45 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=51.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
....+.++..+|+.+|++++.+.+|++++++||+.. + ..|.+ +.+|.++++.+|..|++.
T Consensus 10 ~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-----g-~~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 10 ESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK-----G-KERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred EEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC-----C-cccCc-cCcHHHcCCCCCCEEEEe
Confidence 457788999999999999999999999999999963 2 34554 689999999999998884
No 45
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=97.37 E-value=0.00083 Score=54.39 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
+....+.++..+|+.+|+++++..+|++++++||+. .+ ..|.| +.+|.++++.+|..|.+-+
T Consensus 10 G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-----~G-~~L~d-~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 10 GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF-----KG-KALAD-DKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE-----CC-EECCC-CCCHHHCCCCCCCEEEEEE
Confidence 346778999999999999999999999999999985 23 55665 6899999999999887743
No 46
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=97.30 E-value=0.00079 Score=66.32 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=68.2
Q ss_pred ceeEeecCCCCC---ceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCC--CCcEEEEEEECCceeEec
Q 007395 491 FMYLTLPLPSTV---TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI--DEGLLLAEVYNHQIFRFF 565 (605)
Q Consensus 491 F~~LsL~ip~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~e~~~~~~~~~~ 565 (605)
|.+--|+||-.. ...+.+..... +...-..+.+.+++.+++.+|.+++.+..+++. ..++.+.++++++|++.|
T Consensus 3 l~YevL~i~l~ElE~kk~~kv~w~~~-~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~ 81 (213)
T PF14533_consen 3 LYYEVLDIPLKELENKKQFKVTWLND-GLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKIL 81 (213)
T ss_dssp EEEEE-SS-HHHHHSB--EEEEEE-T-TS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE
T ss_pred eEEEecCCCHHHHhCceEEEEEEECC-CCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeec
Confidence 445556666432 23344444332 322345689999999999999999999998863 358999999999999999
Q ss_pred ccCcccccCcCCCCeEEEEEecCCC-----C--CceEEEEeeeccc
Q 007395 566 ENPAELISSIKDDEHIVAYRFDRKQ-----G--GKIKLEIVNRWQE 604 (605)
Q Consensus 566 ~~~~~~~~~i~~~d~~~~~e~~~~~-----~--~~~~~~~~~~~~~ 604 (605)
. .+.++..|.+...+++-++|..+ . +...|+|+|-.+|
T Consensus 82 ~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~ 126 (213)
T PF14533_consen 82 S-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKD 126 (213)
T ss_dssp --TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSS
T ss_pred C-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecC
Confidence 9 78999999766678888898865 2 3588999997664
No 47
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=97.28 E-value=0.0015 Score=52.92 Aligned_cols=63 Identities=8% Similarity=0.221 Sum_probs=53.7
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.....+.++...|+.+|++++....|+|.+++||+. .+ ..|.| +.+|.++++.+|..+.+.++
T Consensus 8 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-----~G-~~L~D-~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 8 GRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF-----EG-RPMED-EHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE-----CC-EECCC-CCCHHHcCCCCCCEEEEEEE
Confidence 356778999999999999999999999999999985 23 55665 58999999999999888655
No 48
>PTZ00044 ubiquitin; Provisional
Probab=97.24 E-value=0.0016 Score=52.87 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
++...++.++..+|+.+||.++.+..|+|++.+||+. . + ..|.| +.+|.++++.+|..|.+-++
T Consensus 9 ~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~----g-~~L~d-~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 9 TGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY-S----G-KQMSD-DLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE-C----C-EEccC-CCcHHHcCCCCCCEEEEEEE
Confidence 3356788999999999999999999999999999994 2 2 45664 67899999999999888655
No 49
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=97.21 E-value=0.00095 Score=55.92 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=54.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
...+.++..+|+.+||.++.+.|+|++.+++||.. + ..|.|++.||.++++.+|..|+|-
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-----G-~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-----G-KILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-----C-ceeccCCccHHhcCCCCCCEEEEE
Confidence 57788999999999999999999999999999984 3 467788999999999999999983
No 50
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=97.17 E-value=0.0013 Score=53.49 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=53.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++...+|+|++++||+.. + ..|.| +.+|.++++.+|..|.|-++
T Consensus 8 ~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~-----G-~~L~d-~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 8 QMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE-----G-IFIKD-SNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC-----C-EEcCC-CCcHHHcCCCCCCEEEEEEe
Confidence 356788999999999999999999999999999963 2 45665 68999999999999888655
No 51
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=97.16 E-value=0.0022 Score=52.15 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=52.8
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCC--CCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v--~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++...|+.+|++++...+++ +++++||+. .+ ..|.| +.+|.++++.+|..|++-++
T Consensus 11 ~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~-----~G-~~L~d-~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 11 QTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY-----SG-KILKD-DTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE-----CC-EEccC-CCCHHHcCCCCCCEEEEEEe
Confidence 56788999999999999999999999 899999996 23 56665 68999999999998888543
No 52
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=97.15 E-value=0.0026 Score=51.50 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=52.3
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
....+.++...|+.+||+++.+.+++|++++||+. . + ..|.+ +.+|.++++.+|..|.+-++
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~-~----g-~~L~d-~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-S----G-KQMND-DKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE-C----C-eEccC-CCCHHHcCCCCCCEEEEEEE
Confidence 45678899999999999999999999999999994 2 2 44554 68999999999999888554
No 53
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=97.14 E-value=0.0012 Score=52.42 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=52.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
..+.+.++..+|+.+|++++.+.+++|++++||.. .+ ..|. ++.+|.++++.+|..|.+-+
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~-----~G-~~L~-d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY-----NG-KELD-DDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE-----TT-EEES-TTSBTGGGTTSTTEEEEEEE
T ss_pred cEEEEEECCCCCHHHhhhhcccccccccccceeee-----ee-eccc-CcCcHHHcCCCCCCEEEEEE
Confidence 35788999999999999999999999999999987 33 5564 57899999999999888743
No 54
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.11 E-value=0.0021 Score=53.85 Aligned_cols=66 Identities=24% Similarity=0.242 Sum_probs=53.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCC--CccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNK--QRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~--~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
...+..++...|+.+||.++..++|+++..+||..+... ... ..+.+++++|..+++.+|..|.+.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~-~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKI-EELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEE-EESSGSSSBCCHHT-STTEEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccc-cccCCCccEeecCCCCCCCEEEEE
Confidence 367889999999999999999999999999999887222 222 456777899999999999988883
No 55
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=97.06 E-value=0.0023 Score=51.23 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
+....+.++..+|+.++|+++....|++++++|||. .+ ..|+| +.+|.++++..|.+|-|
T Consensus 8 G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~-----~G-~~L~D-~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 8 GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF-----SG-KLLTD-KTRLQETKIQKDYVVQV 67 (70)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE-----CC-eECCC-CCCHHHcCCCCCCEEEE
Confidence 356788999999999999999999999999999996 23 55665 68999999998887665
No 56
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=97.05 E-value=0.0031 Score=51.01 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=52.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
....+.++..+|+.+||+++.+.+++|++++|||. . + ..|.| +.+|.++++.+|..|.+-++
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~-~----g-~~L~d-~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----G-KQLED-GRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE-C----C-EECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 45678999999999999999999999999999995 2 2 45665 67999999999999888655
No 57
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=97.04 E-value=0.0023 Score=51.79 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=52.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...++.+++.+|+.+||+++....|+|++++||+. .+ ..|.| +.+|+++++.++..|-+-++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~-----~G-k~L~D-~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL-----AG-VPLED-DATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE-----CC-eECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 35778899999999999999999999999999996 23 45665 68999999999998877544
No 58
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=97.04 E-value=0.0033 Score=50.82 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=50.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.++..+|+.+|++++.+.++++++++||-.- + ..|.| +.+|+++++.+|..|.|
T Consensus 12 k~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-----G-k~L~D-~~tL~~ygi~~~stv~l 70 (73)
T cd01791 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-----Y-TIFKD-HISLGDYEIHDGMNLEL 70 (73)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC-----C-cCCCC-CCCHHHcCCCCCCEEEE
Confidence 567778999999999999999999999999999752 3 45665 67999999999998877
No 59
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=97.04 E-value=0.0023 Score=51.95 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=49.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccC-CCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ-MDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~-~~~~lll 239 (605)
....+.+++..|+.+||.++...+|+|++.+|| . . + ..|.+++.+|.++++. .|+.+.|
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~-~----G-~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V-I----G-QRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E-c----C-CeeCCCcCCHHHcCCCCCCCEEEE
Confidence 457789999999999999999999999999999 3 2 2 3455557899999998 7788776
No 60
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0006 Score=76.32 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=57.9
Q ss_pred cccCCCCcchhHHHHHHhCChhHHHHHHhcccc----------cccCCCCCCChHHHHHHHHHHHHHHhcCCCcccc--h
Q 007395 322 LQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSD----------EINTENPLGMHGELALAFGDLLRKLWSSGRAAVA--P 389 (605)
Q Consensus 322 L~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~----------~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~--P 389 (605)
|+|.||+||.||+||||..+++|+--+...+.. ..+.....-.......+....+... ......+. -
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 999999999999999999999999877633221 1111111100111111111111111 11111222 2
Q ss_pred HHHHHHH---hhhcCCCCCCCCccHHHHHHHHHHHHHHHH
Q 007395 390 RAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDL 426 (605)
Q Consensus 390 ~~f~~~l---~~~~~~F~~~~QqDA~Efl~~LLd~L~eel 426 (605)
..+...+ .+....|....|+|||+|+.-++-.+..-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 2333322 223345778899999999999887776544
No 61
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=96.99 E-value=0.0035 Score=50.13 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=51.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.+++.+|+.+||+++....|++.+++||+. .+ ..|.| +.+|.++++.+|..|-+
T Consensus 9 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~-----~G-~~L~d-~~~l~~~~i~~~stl~l 67 (70)
T cd01798 9 HTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF-----AG-KELRN-TTTIQECDLGQQSILHA 67 (70)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE-----CC-eECCC-CCcHHHcCCCCCCEEEE
Confidence 46778899999999999999999999999999986 23 55665 68999999999998866
No 62
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.95 E-value=0.0038 Score=49.94 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=51.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.++...|+.+|++++.+.+|++++++||+. .+ ..|.| +.+|.++++.+|..|.+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-----~g-~~L~d-~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 11 QTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY-----SG-RVLKD-DETLSEYKVEDGHTIHL 69 (72)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-----CC-EECCC-cCcHHHCCCCCCCEEEE
Confidence 46778899999999999999999999999999996 23 45665 68999999999998876
No 63
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=96.95 E-value=0.0042 Score=50.87 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=51.0
Q ss_pred eEEE-eChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEee
Q 007395 176 TVIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (605)
Q Consensus 176 ~~i~-vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~ 243 (605)
..+. +....|+.+|++++.+..|++++++||+. .+ ..|+| +.+|.++++..|..|.+-++.
T Consensus 14 ~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~-----~G-k~L~D-~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 14 RTVDSLSRLTKVEELREKIQELFNVEPECQRLFY-----RG-KQMED-GHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe-----CC-EECCC-CCCHHHcCCCCCCEEEEEEec
Confidence 3553 67889999999999999999999999996 23 55665 689999999999998886653
No 64
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.93 E-value=0.0039 Score=51.32 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=51.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
....+.++...|+.+|++++.+.++++++++||-... .+ ..|.| +.+|.++++.+|..|.+-++
T Consensus 13 ~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G-~~L~D-~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 13 NEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SR-EVLQD-GVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CC-CCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence 4567788999999999999999999999999994322 22 45665 57999999999999877543
No 65
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=96.88 E-value=0.005 Score=53.28 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+....+.++..+|+.+||+++.+..|++.+++||+. .+ ..|.| +.+|++++|.+|..|-+.++
T Consensus 37 G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 37 GTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW-----NN-MELED-EYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE-----CC-EECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 356788999999999999999999999999999996 23 45665 68999999999999888655
No 66
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=96.79 E-value=0.0074 Score=50.18 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=54.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
...+..++...|+.+|++++...+|+++..+||..+.........|.+++.+|..+++.+|..|.|.
T Consensus 13 ~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 13 FSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 3466779999999999999999999999999997655442221346677889999999999998883
No 67
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=96.74 E-value=0.0076 Score=48.31 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=49.2
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+...+|+.+|++++.+..+++.+++||+. .+ ..|.| +.+|.++++.+|..|-+-
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~-----~G-k~L~d-~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF-----AG-KILKD-TDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE-----CC-eEcCC-CCcHHHcCCCCCCEEEEE
Confidence 478889999999999999999999999999976 23 45665 679999999999987663
No 68
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=96.68 E-value=0.014 Score=47.81 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=50.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
....+.++..+|+.+|++++.+.++++++++||-.- + ..|.| + +|.++++.+|..|.+-
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~-----G-k~L~d-~-~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 12 TRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR-----E-TRLSS-G-KLQDLGLGDGSKLTLV 70 (78)
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC-----C-cCCCC-C-cHHHcCCCCCCEEEEE
Confidence 457789999999999999999999999999998742 3 45665 4 8999999999988774
No 69
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.58 E-value=0.0019 Score=64.67 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.9
Q ss_pred CCccHHHHHHHHHHHHHHH
Q 007395 407 NQHDSQELLAFLLDGLHED 425 (605)
Q Consensus 407 ~QqDA~Efl~~LLd~L~ee 425 (605)
.|||+.||+.+|++.|.--
T Consensus 22 ~q~D~~e~~~~l~~~~~~~ 40 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMP 40 (241)
T ss_pred HhcCHHHHHHHHHHHHhhh
Confidence 8999999999999998643
No 70
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=96.36 E-value=0.033 Score=46.62 Aligned_cols=63 Identities=16% Similarity=0.323 Sum_probs=53.6
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.....+.+.+.+++..|+++.++..|++++++||+.- + ..|.+ +.|+.++++.+|+.|-+-++
T Consensus 21 g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~-----G-~~L~~-~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 21 GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD-----G-QRIRD-NQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC-----C-eECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 4667899999999999999999999999999999972 3 45655 67999999999998877544
No 71
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=96.14 E-value=0.012 Score=45.61 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=45.7
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCC
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQ 235 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~ 235 (605)
...+.++...|+.+|+.++.+.++++++++||+.. + ..|.+ +.+|.++++.+|.
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~-----g-~~L~d-~~tL~~~~i~~~~ 64 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK-----G-KVLED-DRTLADYNIQDGS 64 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC-----C-EECCC-CCCHHHcCCcCCC
Confidence 57788999999999999999999999999999862 2 45665 6899999998763
No 72
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=96.10 E-value=0.021 Score=44.86 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=49.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.+....|+.+|++++.+.+++++.+++|+.- + ..|.+ +.+|.++++.+|..|++
T Consensus 8 ~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~-----g-~~l~d-~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 8 KTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA-----G-KILKD-DKTLSDYGIQDGSTLHL 66 (69)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC-----C-cCCCC-cCCHHHCCCCCCCEEEE
Confidence 356678888999999999999999999999999752 2 34544 67899999999998877
No 73
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.32 E-value=0.049 Score=58.12 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=53.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhC---CCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRG---IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~---v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+||.+||+++....| ++.+++||+. .+ ..|+| +.+|.+++|+.|..|++-+.
T Consensus 11 ~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy-----~G-kiL~D-d~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 11 QKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY-----SG-KILSD-DKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE-----CC-EECCC-CCcHHHcCCCCCCEEEEEec
Confidence 4688899999999999999999998 9999999997 23 56665 67999999999998888655
No 74
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=94.38 E-value=0.13 Score=41.03 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=48.7
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCC-ceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQ-EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~-~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.+.+..++..|++..++..+++. +.++|+.- + ..|. ++.|+.++++.+|+.|-+
T Consensus 11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd-----G-~~L~-~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD-----G-KRLD-PNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET-----T-EEE--TTSCHHHHT-STTEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC-----C-EEcC-CCCCHHHCCCCCCCEEEE
Confidence 4678889999999999999999999998 99999973 3 4555 468999999999987644
No 75
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=94.16 E-value=0.061 Score=44.24 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=37.4
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCcccccc-CCCCCChhhhccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL-DVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l-~~~~~tl~d~~l~~~~~lll 239 (605)
...+.++..+|+.+|++++.+.++++...+.|+.- .+.. ..+ .+.++++.+++|+.|+.|.|
T Consensus 15 ~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~--~~~~-~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 15 MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKD--RNNK-EELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSS--GGGG-GCSSS-TT-CCCCT---TT-EEE-
T ss_pred CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEec--CCCC-cccccCCcCCHHHcCCCCccEEEE
Confidence 45678899999999999999999999888877642 2222 344 45678999999999998877
No 76
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=94.09 E-value=0.12 Score=41.80 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=41.7
Q ss_pred hhchHHHHHHHHHHHhC--CC-CceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 182 KKASTRQLYEKVCKLRG--IE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 182 ~~~tv~~l~~~l~~~~~--v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...|+.+|++++.+.++ ++ ++++||-. .+ ..|+| +.||.+++|.+|..|.|
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy-----~G-KiL~D-~~TL~dygI~~gstlhL 72 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIH-----CG-RKLKD-DQTLDFYGIQSGSTIHI 72 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEe-----CC-cCCCC-CCcHHHcCCCCCCEEEE
Confidence 46899999999999984 65 88899886 23 45665 68999999999998776
No 77
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=92.83 E-value=0.46 Score=41.20 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=50.4
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhcc-------CCCCeEEEEEe-ecCc
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-------QMDQDILLEVQ-VDNG 246 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l-------~~~~~llle~~-~~g~ 246 (605)
.+-+.+-...|+-+||+.+..++++|++++|||. . . ..|+ +++||.|+++ ..-..|-|-++ .||.
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~pp~dQrL~k-d----~-qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~ 85 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRPPEDQRLYK-D----D-QLLD-DGKTLGDCGFTSQTARPQAPATVGLAFRSSDDT 85 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCChhHheeec-C----c-eeec-ccccHHHcCccccccccCCCCeEEEEEecCCCC
Confidence 4456667789999999999999999999999992 2 1 3455 4899999999 33556777666 4565
Q ss_pred c
Q 007395 247 I 247 (605)
Q Consensus 247 ~ 247 (605)
|
T Consensus 86 f 86 (119)
T cd01788 86 F 86 (119)
T ss_pred c
Confidence 4
No 78
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=92.77 E-value=0.46 Score=38.87 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=43.7
Q ss_pred ceEEEeChhchHHHHHHHHHHHhC-CC-CceeEEEEecCCCccccccCCCCCChhhhc--cCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRG-IE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAM--LQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~-v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~--l~~~~~lll 239 (605)
.+.+.+...+|+.+||+++.+.++ .+ ++++||-. .+ ..|+| +.||.++. +..|..|=|
T Consensus 15 ~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy-----~G-KiLkD-~~tL~~~~~~~~~~~tiHL 76 (79)
T cd01790 15 DQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY-----SG-KLLPD-HLKLRDVLRKQDEYHMVHL 76 (79)
T ss_pred EEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE-----cC-eeccc-hhhHHHHhhcccCCceEEE
Confidence 355666899999999999999885 44 79999887 34 56765 68999995 776665433
No 79
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=92.16 E-value=0.41 Score=51.74 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=53.1
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.+.+.|....+|.+||+.+.+.|+.++++++|-.. + ..|+| +.||..++|.+|.+|=|-++
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfa-----G-rILKD-~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYA-----G-RILKD-DDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCChhHeeeeec-----C-ccccC-hhhHHHcCCCCCcEEEEEec
Confidence 78899999999999999999999999999998873 3 66775 67999999999998777433
No 80
>PLN02560 enoyl-CoA reductase
Probab=90.62 E-value=0.66 Score=48.29 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=48.8
Q ss_pred eEEEeChhchHHHHHHHHHHHhCC-CCceeEEEEecCCC--ccccccCCCCCChhhhccCCCCeEEE
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRGI-EQEKARIWDYFNKQ--RSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~v-~~~~~RLw~~~~~~--~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
.++.++..+|+.+|++++.+..++ +++++||+.....+ .. ..|.| +++|.++++.+|.+|.+
T Consensus 16 ~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g-~~L~d-~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 16 GGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRP-TVLDD-SKSLKDYGLGDGGTVVF 80 (308)
T ss_pred eeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCc-cccCC-CCCHHhcCCCCCceEEE
Confidence 368889999999999999999886 79999999642222 22 24444 67999999999998777
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=90.51 E-value=3.2 Score=34.47 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=48.8
Q ss_pred eeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEE--ECCceeEecccCccccc--CcCCCCeEEEEEecC
Q 007395 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEV--YNHQIFRFFENPAELIS--SIKDDEHIVAYRFDR 588 (605)
Q Consensus 520 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~~ 588 (605)
...+.++++..++.+|+..|..++|++ ++.+.+.-. .+......+.||+.+|. .+.++..|++-...+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~-~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~p 85 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIP-PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTNP 85 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS--TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T-
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCC-cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCCC
Confidence 457789999999999999999999999 666666444 34446666666777786 678888887766543
No 82
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=90.39 E-value=0.83 Score=37.08 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=42.7
Q ss_pred ChhchHHHHHHHHHHHhCC-CCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 181 SKKASTRQLYEKVCKLRGI-EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 181 S~~~tv~~l~~~l~~~~~v-~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
+...|+.+|++.+.+..+. +++++||+... .+ ..|.+ +.+|.++++.+|..|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g-~~L~d-~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KG-KSLKD-DDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CC-cccCC-cccHhhcCCCCCCEEEE
Confidence 5678999999999998864 68999999532 33 45554 56899999999988776
No 83
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=88.63 E-value=2.4 Score=34.70 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=51.8
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCce-eEEEEecCCCccccccCCCC-CChhhhccCCCCeEEEE
Q 007395 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSD-QTLDDAMLQMDQDILLE 240 (605)
Q Consensus 170 ~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~-~RLw~~~~~~~~~~~l~~~~-~tl~d~~l~~~~~llle 240 (605)
.+++......+...+|+.+|...+......+... ++|..-... ..+.+.+ +||.|+++.++..|+||
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr----~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPR----RELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSST----EECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCC----cCCCccccccHHHhcCCCCeEEEEE
Confidence 3556678888999999999999999888777554 888753332 3344434 89999999999999986
No 84
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=87.92 E-value=2.7 Score=33.83 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
.+.+..+.|.. +.+.++...++.+|+++|+...|++ +++.-++ +. .+.+. |+.+|. .|.++..|+.|
T Consensus 3 ~i~vkt~~Gk~----~~~~v~~~~TV~~LK~~I~~~~~~~-~~~qrLi--~~---Gk~L~-D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 3 EVVCNDRLGKK----VRVKCNPDDTIGDLKKLIAAQTGTR-PEKIVLK--KW---YTIFK-DHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEECCCCCE----EEEEeCCCCcHHHHHHHHHHHhCCC-hHHEEEE--eC---CcCCC-CCCCHHHcCCCCCCEEEEE
Confidence 44555555532 5668889999999999999999998 7777664 33 34677 455664 68888888877
No 85
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=87.48 E-value=5.3 Score=32.57 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=50.5
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCC--CCCChhhhccCCCCeEEEE
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDV--SDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~--~~~tl~d~~l~~~~~llle 240 (605)
..+++......++..+|+.+|.+.+....+.....++|..-... ..+.+ .++||.+++|.++..|+||
T Consensus 10 RlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Pr----k~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 10 RLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPR----RTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred EcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCC----cCCccccccCCHHHCCCCCceEEEEe
Confidence 34566678888999999999999997666666667777653322 23333 3689999999999999885
No 86
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.98 E-value=5.7 Score=32.59 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=52.0
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+++......+...+++.+|...+... +.+++.++|.--...... .. .+.+.||.|++|.+...|+||.+
T Consensus 10 RlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~-~~-~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 10 RTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDL-TQ-LDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCC-cC-CCCCCcHHHcCCCCCcEEEEEcC
Confidence 3455566778899999999999999764 667778888753333222 11 24568999999999999999853
No 87
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=86.36 E-value=1.1 Score=37.42 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=43.5
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCC
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM 233 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~ 233 (605)
.+.+......|+-+|+.++.-++.-|++.+|||++... .+|. +.+||.|+++.+
T Consensus 13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e----qlL~-D~ktL~d~gfts 66 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE----QLLD-DGKTLGDCGFTS 66 (110)
T ss_pred eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHH----HHhh-ccchhhhccccc
Confidence 45566778899999999999999999999999997643 3455 478999997654
No 88
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.20 E-value=8.5 Score=31.77 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=52.4
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+++......+...+++.+|...+.. .+.+++.+.|.--...-.. .. .+.+.||++++|.+..+|+|+.+
T Consensus 11 RlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~-~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 11 RYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKL-SH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCccc-CC-cccCCCHHHcCCCCCcEEEEecC
Confidence 345566777888888999999999887 5778888888853322222 22 33468999999999999999743
No 89
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=85.01 E-value=3.4 Score=30.21 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=45.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.++...|+.+|++++++.++++++.++|+... ..+.+ ...+.++.+..|..|.+
T Consensus 8 ~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~------~~~~~-~~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 8 KTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNG------KILPD-SLTLEDYGLQDGDELVL 66 (69)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECC------eECCC-CCcHHHcCCCCCCEEEE
Confidence 4567788889999999999999999999999998632 22332 34446778888888776
No 90
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.99 E-value=9.3 Score=31.73 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=48.2
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCcccccc----CCCCCChhhhccCCCCeEEEE
Q 007395 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL----DVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 170 ~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l----~~~~~tl~d~~l~~~~~llle 240 (605)
.+++......+....|+.+|...+.. .+..++.++|.--...... ..+ .+.+.||+|+||.....|+|+
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~-~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVL-PCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccc-cccccccCcCCCCHHHcCCCCccEEEEe
Confidence 45556677888999999999999954 3445677877652222111 111 245789999999999888885
No 91
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=1.9 Score=32.69 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=46.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~ll 238 (605)
....+.+...+++..+++++.+.-|+||.++||...+ ..+.| |.|-.++++.-|.++-
T Consensus 11 KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~g------kqm~D-D~tA~~Y~~~~GSVlH 68 (70)
T KOG0005|consen 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAG------KQMND-DKTAAHYNLLGGSVLH 68 (70)
T ss_pred ceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcc------ccccc-cccHHHhhhccceeEe
Confidence 3567888899999999999999999999999987633 23433 7889999988886653
No 92
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=81.81 E-value=7.1 Score=31.80 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=46.5
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
+.+++..+.|.. +.+.+....++.++++.+++..+++ +++.-++-++..+ .+. |+.+++ .|.+++.|+
T Consensus 3 ~~i~Vk~~~G~~----~~~~v~~~~TV~~lK~~I~~~~~i~-~~~qrL~~~~~G~---~L~-D~~tL~~~gi~~gs~l~ 72 (80)
T cd01792 3 WDLKVKMLGGNE----FLVSLRDSMTVSELKQQIAQKIGVP-AFQQRLAHLDSRE---VLQ-DGVPLVSQGLGPGSTVL 72 (80)
T ss_pred eEEEEEeCCCCE----EEEEcCCCCcHHHHHHHHHHHhCCC-HHHEEEEeccCCC---CCC-CCCCHHHcCCCCCCEEE
Confidence 456666666653 5567778899999999999999998 7777776555443 445 345554 455555553
No 93
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=79.31 E-value=15 Score=29.51 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=45.7
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccC--CCCCChhhhccCCCCeEEE
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD--VSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~--~~~~tl~d~~l~~~~~lll 239 (605)
..+++......++..+|+.+|.+.+.....- ...++|+.-... ..+. +.+.||.+++|.++ .+++
T Consensus 8 RlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr----~~~~~~~~~~TL~e~gL~~s-~~~~ 74 (77)
T cd01767 8 RLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPR----RVLTDLDYELTLQEAGLVNE-VVFQ 74 (77)
T ss_pred EcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCC----ccCCCCCccCcHHHcCCccc-eEEE
Confidence 3455566778899999999999999876433 566777753332 2233 36899999999955 4444
No 94
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=79.10 E-value=13 Score=29.43 Aligned_cols=67 Identities=6% Similarity=0.067 Sum_probs=45.8
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
.+.+...+|.. ..+.+....++.++++.|+...|++ +++.-+. ++. +.+. |+.+++ .|.+++.|++.
T Consensus 2 ~i~v~~~~g~~----~~~~v~~~~tv~~lK~~i~~~~g~~-~~~qrL~--~~g---~~L~-d~~tl~~~~i~~g~~i~l~ 70 (76)
T cd01806 2 LIKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIP-PQQQRLI--YSG---KQMN-DDKTAADYKLEGGSVLHLV 70 (76)
T ss_pred EEEEEeCCCCE----EEEEECCCCCHHHHHHHHhHhhCCC-hhhEEEE--ECC---eEcc-CCCCHHHcCCCCCCEEEEE
Confidence 34555666653 4577888999999999999999998 6655554 443 3344 455664 57777777543
No 95
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=77.70 E-value=1 Score=42.47 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=15.6
Q ss_pred CCCccccCCCCcchhHHHHHHh
Q 007395 318 GLAGLQNLGNTCFMNSALQCLV 339 (605)
Q Consensus 318 g~~GL~NlGNTCYmNSvLQ~L~ 339 (605)
.+.|+-|.+|+|.+||++|.+.
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~ 53 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFR 53 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHH
Confidence 4569999999999999999874
No 96
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=77.23 E-value=4.8 Score=32.80 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=41.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCce---eEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEK---ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~---~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+.+....++.+|...+...++.+... ..-|... ...+ ..|. .+.||.++++.+|+.+++
T Consensus 13 ~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g-~~L~-~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 13 RQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGG-RPLD-PDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp -EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGT-EEEE-TTSBCGGGT--TT-EEEE
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCC-cccC-CcCcHhHcCCCCCCEEEe
Confidence 568889999999999999999999986332 2367766 2334 4454 478999999999998876
No 97
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=76.64 E-value=14 Score=29.89 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=46.4
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+++....|.. +.+.++..+++.+|++.++...+++ +++.-++ +.. +.+.| + +|. .|.+++.|+.
T Consensus 2 m~I~Vk~~~G~~----~~l~v~~~~TV~~LK~~I~~~~~~~-~~~qrL~--~~G---k~L~d-~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 2 MNLNIHSTTGTR----FDLSVPPDETVEGLKKRISQRLKVP-KERLALL--HRE---TRLSS-G-KLQDLGLGDGSKLTL 69 (78)
T ss_pred eEEEEEECCCCE----EEEEECCcCHHHHHHHHHHHHhCCC-hHHEEEE--ECC---cCCCC-C-cHHHcCCCCCCEEEE
Confidence 345566666643 6788899999999999999999988 6666554 333 34553 4 564 6777777754
No 98
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=76.25 E-value=20 Score=29.22 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=44.4
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecCCCccccccCCCCCChhhhccCCC
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 234 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~ 234 (605)
..+++......+...+|+.+|.+.+.....-+ ...+.|.--.. . ..|.+.+.||+|++|...
T Consensus 10 RlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP---~-k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 10 RLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFP---V-KELSDESLTLKEANLLNA 72 (79)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCC---C-cccCCCCCcHHHCCCcCc
Confidence 34566677788999999999999999876432 45566664222 1 335555899999999865
No 99
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=75.82 E-value=3.2 Score=38.12 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=50.7
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..++.+...+|+..++.++...-+||++++|+.... ..|.| ..++.|++|.....|-+-++
T Consensus 12 ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag------~qLed-grtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 12 TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLED-GRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred ceeeeecccccHHHHHHhhhcccCCCchhhhhhhhh------ccccc-CCccccccccccceEEEEEE
Confidence 456778899999999999999999999999988733 56776 48999999998887666555
No 100
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=74.79 E-value=16 Score=28.46 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=42.6
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
.+.+.++...++.+|++.|+...+++ ++...+. ++.+. +. |+.+|. .|.+++.|+++
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~-~~~~~L~--~~G~~---L~-d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIP-PEQQRLI--YNGKE---LD-DDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTST-GGGEEEE--ETTEE---ES-TTSBTGGGTTSTTEEEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccc-cccceee--eeeec---cc-CcCcHHHcCCCCCCEEEEE
Confidence 47888999999999999999999998 6666553 34433 34 677775 67777776654
No 101
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=74.47 E-value=8.1 Score=37.22 Aligned_cols=66 Identities=24% Similarity=0.202 Sum_probs=54.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
......+++..|+.+|+.++..++|.+.+.++|-.+....+.-..|.+.+..|..+...+|-.|.+
T Consensus 13 ~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihv 78 (234)
T KOG3206|consen 13 FRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHV 78 (234)
T ss_pred chhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEE
Confidence 346678899999999999999999999999998887764333267888888899888888877666
No 102
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=74.24 E-value=12 Score=30.71 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=40.6
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhh
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA 229 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~ 229 (605)
...+.+.+..++.+|.+++.+.++++++.++|+...........+ .|..++++
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l--~d~dle~a 64 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL--SDTNMEDV 64 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc--ChHHHHHH
Confidence 467888999999999999999999999999999766553221233 35567666
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=74.18 E-value=12 Score=29.47 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=34.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~ll 238 (605)
...++.+++..++.++++.+|+.|++++++..|..-. ..+ |.+..+.=++|-.|.++-
T Consensus 7 rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~------k~l-dlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 7 RRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNN------KPL-DLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp -EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETT------EEE-SSS-BHHHH---SS-EEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECC------EEe-ccccceeecCCCCCCEEe
Confidence 4678899999999999999999999998876666411 223 456677777888877654
No 104
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=72.43 E-value=22 Score=30.60 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=51.5
Q ss_pred eeEeecCCCCCceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccc
Q 007395 492 MYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAEL 571 (605)
Q Consensus 492 ~~LsL~ip~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 571 (605)
..+.+.++.. ..+.+++..+.|.. +.+.+....++.++++.|+...|++ ++..-+ ++.. +.+. |+.+
T Consensus 16 ~~~~~~~~~~--~~M~I~Vk~l~G~~----~~leV~~~~TV~~lK~kI~~~~gip-~~~QrL--i~~G---k~L~-D~~t 82 (103)
T cd01802 16 GPFHYKLPFY--DTMELFIETLTGTC----FELRVSPFETVISVKAKIQRLEGIP-VAQQHL--IWNN---MELE-DEYC 82 (103)
T ss_pred ceeEEeeccC--CCEEEEEEcCCCCE----EEEEeCCCCcHHHHHHHHHHHhCCC-hHHEEE--EECC---EECC-CCCc
Confidence 3444445432 35777777777763 6678889999999999999999998 554433 2333 3355 4566
Q ss_pred cc--CcCCCCeEE
Q 007395 572 IS--SIKDDEHIV 582 (605)
Q Consensus 572 ~~--~i~~~d~~~ 582 (605)
|+ .|.+++.|+
T Consensus 83 L~dy~I~~~stL~ 95 (103)
T cd01802 83 LNDYNISEGCTLK 95 (103)
T ss_pred HHHcCCCCCCEEE
Confidence 64 566666654
No 105
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=71.51 E-value=21 Score=28.25 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=42.4
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+++...+|.. +.+.+....++.++++.|++.+|++ +++..+. +..+ .+. |+.+++ .|.+++.|++
T Consensus 3 i~v~~~~g~~----~~~~v~~~~tV~~lK~~i~~~~g~~-~~~q~L~--~~g~---~L~-d~~~L~~~~i~~~~~i~l 69 (76)
T cd01803 3 IFVKTLTGKT----ITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAGK---QLE-DGRTLSDYNIQKESTLHL 69 (76)
T ss_pred EEEEcCCCCE----EEEEECCcCcHHHHHHHHHHHhCCC-HHHeEEE--ECCE---ECC-CCCcHHHcCCCCCCEEEE
Confidence 4455555543 4577888899999999999999998 5555553 3433 355 455564 4555555543
No 106
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=71.39 E-value=8.2 Score=39.88 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=52.7
Q ss_pred CceEEEeChhchHHHHHHHHHHHhC--CCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeec
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRG--IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~--v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~ 244 (605)
..+++.+....||.++|+++....| .|...++|-+ .+ ..|.| +.++.+++++.+..|+|.+.++
T Consensus 11 ~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy-----~G-kiL~D-~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 11 QTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY-----SG-KILKD-ETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred ceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee-----cc-eeccC-CcchhhhccccCceEEEEEecC
Confidence 4578999999999999999999998 6777887765 23 45665 7899999999999888877754
No 107
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=71.37 E-value=49 Score=27.01 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=41.4
Q ss_pred EEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeec
Q 007395 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (605)
Q Consensus 165 l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~ 244 (605)
++|........+-+.. .++.+|+.++|+.|+++...++|....++ ..+.+++ -...-+.++.+|-++.+
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDG----T~VddEe----yF~tLp~nT~lm~L~~g 73 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDG----TEVDDEE----YFQTLPDNTVLMLLEKG 73 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTT----CBESSCH----HHCCSSSSEEEEEEESS
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCC----cEEccHH----HHhhCCCCCEEEEECCC
Confidence 4555444333333443 68999999999999999888888775433 3344321 12223344555556666
Q ss_pred Ccc
Q 007395 245 NGI 247 (605)
Q Consensus 245 g~~ 247 (605)
.+|
T Consensus 74 e~W 76 (78)
T PF02017_consen 74 EKW 76 (78)
T ss_dssp S--
T ss_pred Ccc
Confidence 677
No 108
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=71.31 E-value=20 Score=28.54 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=44.6
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCC--CCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL--KIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+++...+|. .+.+.+....++.++++.|....|+ + +++..+. ++. +.+. |+.+++ .|.+++.|+
T Consensus 2 ~i~vk~~~g~----~~~l~v~~~~TV~~lK~~i~~~~~i~~~-~~~q~L~--~~G---~~L~-d~~~L~~~~i~~~~~i~ 70 (77)
T cd01805 2 KITFKTLKQQ----TFPIEVDPDDTVAELKEKIEEEKGCDYP-PEQQKLI--YSG---KILK-DDTTLEEYKIDEKDFVV 70 (77)
T ss_pred EEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHhhCCCCC-hhHeEEE--ECC---EEcc-CCCCHHHcCCCCCCEEE
Confidence 3455556664 2667888889999999999999998 6 5555443 332 3455 455664 566677665
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
+.
T Consensus 71 ~~ 72 (77)
T cd01805 71 VM 72 (77)
T ss_pred EE
Confidence 43
No 109
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=70.89 E-value=24 Score=28.46 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=40.1
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcC-CCCeEEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIK-DDEHIVAYR 585 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~-~~d~~~~~e 585 (605)
..+.+....++.++++.|....|++ ++...+ +..+- +.+|+.+++ .+. ++|.++.|-
T Consensus 15 ~~l~v~~~~TV~~lK~kI~~~~gip-~~~QrL---~~G~~---L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 15 IWLTVRPDMTVAQLKDKVFLDYGFP-PAVQRW---VIGQR---LARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcC-HHHEEE---EcCCe---eCCCcCCHHHcCCCCCCCEEEEEe
Confidence 5577788899999999999999998 655544 33221 444556675 566 557888773
No 110
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=70.65 E-value=18 Score=27.70 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=40.6
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+.++...++.+|++.+++.+|++ ++++-+ +++. +.+. ++.++. .+.+++.|++.
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~~~-~~~~~l--~~~g---~~l~-d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEGVP-PEQQRL--IYAG---KILK-DDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHCcC-hHHEEE--EECC---cCCC-CcCCHHHCCCCCCCEEEEE
Confidence 4567778899999999999999988 666555 4444 3444 556665 66777777765
No 111
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=69.72 E-value=29 Score=28.62 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=39.3
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCc--eeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ--IFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
.+.+++...++.+|++.|...+|++ +..+-+ .++..+ ....+.+|+.+|. .+.++..|++-
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~-~~~mrL-~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTP-ASSMRL-QLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCC-ccceEE-EEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 5677889999999999999999998 554444 222222 2223444556664 45555555543
No 112
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=69.69 E-value=14 Score=32.28 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=43.2
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhC-----C--CCceeEEEEecCCCccccccCCCCCChhhhccCCC
Q 007395 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRG-----I--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 234 (605)
Q Consensus 164 ~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~-----v--~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~ 234 (605)
.|++...++ .--..++..+|+.+|++++....+ + +.+++||-. .+ ..|.| +.||.++++-.|
T Consensus 8 kfrl~dg~d--igp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy-----sG-KiLeD-~~TL~d~~~p~g 76 (113)
T cd01814 8 KFRLYDGSD--IGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS-----AG-KILEN-SKTVGECRSPVG 76 (113)
T ss_pred EEEccCCCc--cCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe-----CC-eecCC-CCcHHHhCCccc
Confidence 344443333 344567899999999999997663 3 488999886 33 55665 689999995444
No 113
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=69.65 E-value=24 Score=28.39 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=49.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...++.+++.+++..+++++....+.+. .+||-.-....+- .+|.+ ..+|.+++|...-.|.|
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~r-qlL~s-~~sLA~yGiFs~~~i~l 73 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGER-QLLSS-RKSLADYGIFSKTNICL 73 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccc-ccccc-cccHhhhcceeccEEEE
Confidence 4578889999999999999999999986 6777765544443 45554 67999999988877666
No 114
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=68.60 E-value=35 Score=27.11 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=45.0
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+++...+|.. +.+.+....++.++++.|+...|++ ++..-+. ++. +.+. |+.+++ .|.+++.|+.-
T Consensus 3 i~vk~~~G~~----~~l~v~~~~tV~~lK~~i~~~~gi~-~~~q~L~--~~G---~~L~-d~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 3 LTVKLLQGRE----CSLQVSEKESVSTLKKLVSEHLNVP-EEQQRLL--FKG---KALA-DDKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred EEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHHCCC-HHHeEEE--ECC---EECC-CCCCHHHCCCCCCCEEEEE
Confidence 4455566653 5577888999999999999999998 5554442 443 3355 456665 67777777544
No 115
>PTZ00044 ubiquitin; Provisional
Probab=68.31 E-value=28 Score=27.63 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=43.9
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+++...+|.. +.+.+....++.++++.|+...|++ ++..-+. ++.+. +. |+.+++ .|.+++.|++
T Consensus 3 i~vk~~~G~~----~~l~v~~~~tv~~lK~~i~~~~gi~-~~~q~L~--~~g~~---L~-d~~~l~~~~i~~~~~i~l 69 (76)
T PTZ00044 3 ILIKTLTGKK----QSFNFEPDNTVQQVKMALQEKEGID-VKQIRLI--YSGKQ---MS-DDLKLSDYKVVPGSTIHM 69 (76)
T ss_pred EEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHHCCC-HHHeEEE--ECCEE---cc-CCCcHHHcCCCCCCEEEE
Confidence 4455566653 5677888999999999999999998 5555544 44433 44 455564 4666666544
No 116
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=68.27 E-value=36 Score=29.03 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=52.3
Q ss_pred EEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 165 l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
|+|.- .+.....+.+.+..+++.|++.-|+.-|++-+.+|+.. .+ ..+.. +.|..++..++|+.|=+
T Consensus 23 LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlF-----dG-~rI~~-~~TP~~L~mEd~D~Iev 89 (99)
T KOG1769|consen 23 LKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLF-----DG-QRIRE-THTPADLEMEDGDEIEV 89 (99)
T ss_pred EEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEE-----CC-cCcCC-CCChhhhCCcCCcEEEE
Confidence 34443 33466789999999999999999999999999999775 22 34443 67999999999988766
No 117
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=66.46 E-value=33 Score=27.85 Aligned_cols=66 Identities=9% Similarity=0.018 Sum_probs=46.1
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccC--CCCCChhhhccCCCCeEEEE
Q 007395 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD--VSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 170 ~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~--~~~~tl~d~~l~~~~~llle 240 (605)
.+++......++..+|+.++.+.+....+- ...+.|.--... ..+. +.++||.+++|.+...|+|+
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~-~~~f~L~t~fPr----k~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGN-GGPFTLMTPFPR----KVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCC-CCCEEEEeCCCC----eECCcccccCCHHHCCCCCceEEEEe
Confidence 355566778899999999999999865432 244555532211 2232 44789999999999998885
No 118
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=62.98 E-value=14 Score=38.63 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=39.6
Q ss_pred CCCCCccccCCCCcchhHHHHHHhCChh-HHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHH
Q 007395 316 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (605)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~-f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~ 394 (605)
..|..=|.=.-|.||+||++=.|=++.. |+-. ++.++..++..+ .|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-----------------------~l~~aw~~f~~G-----~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKSP-----------------------GLDEAWNEFKAG-----DPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSSH-----------------------HHHHHHHHHHTT-------HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCCH-----------------------HHHHHHHHHhCC-----ChHHHHH
Confidence 3466667777899999999866655432 2211 112222222222 2444544
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHHHH
Q 007395 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHE 424 (605)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~e 424 (605)
.+-.. ..+..++--||+++|..||+.++.
T Consensus 151 ~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 151 WCYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 44322 235567788999999999987653
No 119
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=62.62 E-value=33 Score=26.91 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=38.9
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
+.+.+....++.++++.|+...|++ ++...+ +++.+. +. |+.+++ .|.++..|+
T Consensus 11 ~~~~v~~~~tV~~lK~~i~~~~gi~-~~~q~L--i~~G~~---L~-d~~~l~~~~i~~~stl~ 66 (70)
T cd01798 11 FPVEVDPDTDIKQLKEVVAKRQGVP-PDQLRV--IFAGKE---LR-NTTTIQECDLGQQSILH 66 (70)
T ss_pred EEEEECCCChHHHHHHHHHHHHCCC-HHHeEE--EECCeE---CC-CCCcHHHcCCCCCCEEE
Confidence 5678888999999999999999998 666555 355444 45 456664 566666654
No 120
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=61.89 E-value=37 Score=26.42 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=41.8
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
+++...+|.. +.+.+....++.++++.+++.+|++ ++..-+. ++. +.+. |+.+++ .|.++..|+
T Consensus 3 i~vk~~~g~~----~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~L~--~~g---~~L~-d~~~L~~~~i~~~~~l~ 68 (72)
T cd01809 3 IKVKTLDSQT----HTFTVEEEITVLDLKEKIAEEVGIP-VEQQRLI--YSG---RVLK-DDETLSEYKVEDGHTIH 68 (72)
T ss_pred EEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEE--ECC---EECC-CcCcHHHCCCCCCCEEE
Confidence 4455555543 5677888899999999999999997 5554442 333 3455 456664 455555553
No 121
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=59.98 E-value=64 Score=26.36 Aligned_cols=52 Identities=21% Similarity=0.175 Sum_probs=44.6
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCC-CCCcEEEEEEECC-ceeEecccCccccc
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLK-IDEGLLLAEVYNH-QIFRFFENPAELIS 573 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~e~~~~-~~~~~~~~~~~~~~ 573 (605)
..+.+.+..++.++.+.+.+..++. .++.+.+.|+... ...+.+.|+..++.
T Consensus 15 kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 5688999999999999999999998 7899999999888 67888886666653
No 122
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=57.84 E-value=28 Score=34.20 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=36.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCC---ceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQ---EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~---~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+.+.+..|+.+|++.+.+..+++. .++|+|......-. ..+. .+..+..+ .+...+.+|
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~-~~~~-~d~~i~~l--~~~~~~r~E 99 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIY-KILS-EDEPISSL--NDYITLRIE 99 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEE-EEE--TTSBGGGS----TTEEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEE-eecC-CCCchhhc--cCcceeeee
Confidence 4688999999999999999999999874 48999987554222 3344 45667665 333356666
No 123
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=57.12 E-value=54 Score=28.70 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=44.4
Q ss_pred EEEEecCCCCceEEEeChhchHHHHHHHHHHHh----C-CC--CceeEEEEecCCCccccccCCCCCChhhhccCCCCe-
Q 007395 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLR----G-IE--QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD- 236 (605)
Q Consensus 165 l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~----~-v~--~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~- 236 (605)
|++...+-.....+.++...|+.+|++++...- . -+ +..+||-..+ ..|.| +.||.++.+..|..
T Consensus 5 lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~G------riL~d-~~tL~~~~~~~~~~~ 77 (111)
T PF13881_consen 5 LKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAG------RILED-NKTLSDCRLPSGETP 77 (111)
T ss_dssp EEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETT------EEE-S-SSBTGGGT--TTSET
T ss_pred EEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCC------eecCC-cCcHHHhCCCCCCCC
Confidence 444444222367788999999999999999742 1 11 5678887733 45664 78999999988875
Q ss_pred ---EEEE
Q 007395 237 ---ILLE 240 (605)
Q Consensus 237 ---llle 240 (605)
++|.
T Consensus 78 ~~~~vmH 84 (111)
T PF13881_consen 78 GGPTVMH 84 (111)
T ss_dssp T--EEEE
T ss_pred CCCEEEE
Confidence 6664
No 124
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=56.77 E-value=17 Score=29.77 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=35.9
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+-+++...+|- .++++...+++.+|.+.|.+..+++ ...+.+.-- ++.-.....++..+++ .|+.+|.||.
T Consensus 5 milRvrS~dG~-----~Rie~~~~~t~~~L~~kI~~~l~~~-~~~~~L~~~-~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 5 MILRVRSKDGM-----KRIEVSPSSTLSDLKEKISEQLSIP-DSSQSLSKD-RNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp -EEEEE-SSEE-----EEEEE-TTSBHHHHHHHHHHHS----TTT---BSS-GGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred EEEEEECCCCC-----EEEEcCCcccHHHHHHHHHHHcCCC-CcceEEEec-CCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 34555566654 7888999999999999999999998 444433211 1111122233456665 6788999886
Q ss_pred E
Q 007395 584 Y 584 (605)
Q Consensus 584 ~ 584 (605)
.
T Consensus 78 ~ 78 (80)
T PF11543_consen 78 K 78 (80)
T ss_dssp -
T ss_pred e
Confidence 5
No 125
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=56.14 E-value=27 Score=27.22 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=37.8
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+.+....++.+|++.|+..+|++ +++.-+. ++. +.+. |+.+++ .|.+++.|++
T Consensus 12 ~~i~v~~~~tv~~lK~~i~~~~gi~-~~~q~L~--~~g---~~l~-d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 12 HDLSISSQATFGDLKKMLAPVTGVE-PRDQKLI--FKG---KERD-DAETLDMSGVKDGSKVML 68 (71)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCC-hHHeEEe--eCC---cccC-ccCcHHHcCCCCCCEEEE
Confidence 5677889999999999999999998 5544442 222 2334 355564 4667777654
No 126
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=55.91 E-value=70 Score=25.77 Aligned_cols=65 Identities=28% Similarity=0.388 Sum_probs=47.9
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 170 ~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.+++....+.+-+-.|+.+.+.++++.-|+..+.+-++..+.. + .+. -+ .|..+-.|+.|.+|.+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~-k---~l~-~~---qD~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGD-K---PLV-LD---QDSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCC-c---ccc-cC---CccceeeccEEEEEEe
Confidence 3555677889999999999999999999999999999987433 1 121 12 3344556778888754
No 127
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=55.38 E-value=48 Score=26.32 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=40.2
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+.+....++.++++.++...|++ ++...+. +.. +.+. |+.+++ .|.+++.|+..
T Consensus 11 ~~l~v~~~~tV~~lK~~I~~~~gi~-~~~q~L~--~~G---~~L~-D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 11 SIYEVQLTQTVATLKQQVSQRERVQ-ADQFWLS--FEG---RPME-DEHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred EEEEECCcChHHHHHHHHHHHhCCC-HHHeEEE--ECC---EECC-CCCCHHHcCCCCCCEEEEE
Confidence 4577778899999999999999998 6655553 443 3455 456664 67788877654
No 128
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=55.19 E-value=66 Score=25.82 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 171 ~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
+++....+.+-+..|+.++++++|+.-|+.++...++...... . ...+.+ +|+..-.|+.|.||.
T Consensus 7 Png~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~-~--~~~~~~---~d~~~L~~~El~Ve~ 71 (72)
T cd01760 7 PNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDE-K--KPLDLD---TDSSSLAGEELEVEP 71 (72)
T ss_pred cCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCC-c--CCcCch---hhhhhhcCCEEEEEe
Confidence 4556678899999999999999999999999999988865432 1 111112 334445677777763
No 129
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=55.07 E-value=56 Score=25.80 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=39.6
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+.+....++.++++.++...|++ ++...+. +.. +.+.|+..+++ .|.+++.|+.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gip-~~~q~Li--~~G---k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGIP-ASQQQLI--YNG---RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCCC-HHHeEEE--ECC---eEccCCcccHHHcCCCCCCEEEE
Confidence 6688888999999999999999998 5544332 333 34564445554 6788887754
No 130
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=54.32 E-value=39 Score=27.56 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCcc
Q 007395 184 ASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI 247 (605)
Q Consensus 184 ~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~ 247 (605)
.++++|+.++|+.|+++....+|....++ ..+++++ -.. .|.++ +.+|-+.++..|
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDG----TeVddEe-YF~--tLp~n-T~l~~l~~gq~W 76 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDG----TEVDDEE-YFQ--TLPDN-TVLMLLEPGQKW 76 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCC----cEEccHH-HHh--cCCCC-cEEEEECCCCCc
Confidence 68999999999999999888888875543 3344321 111 23344 444445566667
No 131
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=53.79 E-value=78 Score=24.80 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=36.6
Q ss_pred EEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 523 TVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 523 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+....++.++++.+++..|++ ++++-+ ++..+ .+. |+.+++ .|.++..|+
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~-~~~~~L--i~~Gk---~L~-d~~tL~~~~i~~~stl~ 67 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKAN-QEQLVL--IFAGK---ILK-DTDTLTQHNIKDGLTVH 67 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCC-HHHEEE--EECCe---EcC-CCCcHHHcCCCCCCEEE
Confidence 577778899999999999999987 665555 34433 345 455664 566666654
No 132
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=53.71 E-value=43 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=25.0
Q ss_pred hchHHHHHHHHHHHhCCCCceeEEEEecCC
Q 007395 183 KASTRQLYEKVCKLRGIEQEKARIWDYFNK 212 (605)
Q Consensus 183 ~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~ 212 (605)
..++++|+.++|+.|+++....+|....++
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDG 47 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDG 47 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCC
Confidence 368999999999999999778888875543
No 133
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=52.82 E-value=37 Score=34.24 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=29.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecC
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFN 211 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~ 211 (605)
..+++.+|+..+..+|-+++.+.++++|+.+|+|....
T Consensus 190 ~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 190 PEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp --EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 57999999999999999999999999999999998754
No 134
>COG5417 Uncharacterized small protein [Function unknown]
Probab=52.78 E-value=49 Score=26.62 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=47.1
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCC-----CceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIE-----QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 171 ~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~-----~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
.+...+.+.++...+++.|..-+.+...++ ...+|++. +. .+|.+ +..|.|+++.+|+.+.+
T Consensus 14 y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~n-----Ka-~llsg-d~kL~d~~IadGD~Lei 80 (81)
T COG5417 14 YNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMN-----KA-QLLSG-DDKLIDYQIADGDILEI 80 (81)
T ss_pred cCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEec-----cc-eEecC-CceEEeccccCCCEEEe
Confidence 344678899999999999999999998876 23456554 33 45554 67899999999987654
No 135
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=52.73 E-value=1e+02 Score=25.35 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=46.6
Q ss_pred ceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCe
Q 007395 503 TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEH 580 (605)
Q Consensus 503 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~ 580 (605)
...+.+.+...+|.. ..+++.+..++..+.+++++..|++ ++.+-+. |+. +-+. ++.++. .+.++|.
T Consensus 9 ~~~i~I~v~~~~g~~----~~~~v~~~~~l~~l~~~y~~~~gi~-~~~~rf~--f~G---~~L~-~~~T~~~l~m~d~d~ 77 (87)
T cd01763 9 SEHINLKVKGQDGNE----VFFKIKRSTPLKKLMEAYCQRQGLS-MNSVRFL--FDG---QRIR-DNQTPDDLGMEDGDE 77 (87)
T ss_pred CCeEEEEEECCCCCE----EEEEEcCCCHHHHHHHHHHHHhCCC-ccceEEE--ECC---eECC-CCCCHHHcCCCCCCE
Confidence 345566666666653 5678889999999999999999998 5544442 222 2223 233332 6788888
Q ss_pred EEEE
Q 007395 581 IVAY 584 (605)
Q Consensus 581 ~~~~ 584 (605)
|.++
T Consensus 78 I~v~ 81 (87)
T cd01763 78 IEVM 81 (87)
T ss_pred EEEE
Confidence 8765
No 136
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=52.41 E-value=38 Score=27.26 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=32.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCC
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNK 212 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~ 212 (605)
....+.+++..++.+|..++.+.|+++...++|......
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Ded 49 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDED 49 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCC
Confidence 356778888999999999999999998778888665433
No 137
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=52.15 E-value=1.1e+02 Score=25.01 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=24.6
Q ss_pred hchHHHHHHHHHHHhCCCCceeEEEEecCC
Q 007395 183 KASTRQLYEKVCKLRGIEQEKARIWDYFNK 212 (605)
Q Consensus 183 ~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~ 212 (605)
..++++|+.++|+.|.++....+|....++
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDG 49 (77)
T cd06535 20 AKNLKELLRKGCRLLQLPCAGSRLCLYEDG 49 (77)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCC
Confidence 368999999999999999777888775533
No 138
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=51.65 E-value=52 Score=26.32 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=39.7
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+.+....++.++++.|....|++ +++.-+. +.. +.+. |+.+++ .|.+++.|++.
T Consensus 10 ~~l~v~~~~TV~~lK~~i~~~~gip-~~~q~L~--~~G---~~L~-d~~tL~~~~i~~g~~l~v~ 67 (76)
T cd01800 10 LNFTLQLSDPVSVLKVKIHEETGMP-AGKQKLQ--YEG---IFIK-DSNSLAYYNLANGTIIHLQ 67 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCC-HHHEEEE--ECC---EEcC-CCCcHHHcCCCCCCEEEEE
Confidence 6688888999999999999999998 6555443 333 3455 456665 56677766443
No 139
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=51.64 E-value=4.3 Score=34.68 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=47.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...++.+-+.+|+..++..+...-|+|++.+||-.- + ..|+| ..|+.++++....+|-+
T Consensus 11 KT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~-----~-k~LED-~~Tla~Y~i~~~~Tl~~ 69 (128)
T KOG0003|consen 11 KTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLADYNIQKESTLHL 69 (128)
T ss_pred ceEEEEecccchHHHHHHHhccccCCCHHHHHHHhc-----c-ccccc-CCcccccCccchhhhhh
Confidence 356788888999999999999999999999987752 2 45665 67999999887766555
No 140
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.12 E-value=35 Score=35.35 Aligned_cols=67 Identities=6% Similarity=0.035 Sum_probs=52.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccc-cccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRST-SPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~-~~l~~~~~tl~d~~l~~~~~llle 240 (605)
......++-.-|+.+|++.+-..-|+...++||+....+.+-. ..-.+.++-|.-++|++|+.+++.
T Consensus 348 v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 348 VIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred cccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4566778888999999999999999999999999877654320 111255677888899999999984
No 141
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=49.11 E-value=61 Score=26.52 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=35.3
Q ss_pred eEEEEecCCC---CceEEEeChhchHHHHHHHHHHHhCCC--CceeEEE
Q 007395 164 CLKLIDSRDN---SQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIW 207 (605)
Q Consensus 164 ~l~i~~~~~~---~~~~i~vS~~~tv~~l~~~l~~~~~v~--~~~~RLw 207 (605)
.++|+..... ...++.++...|..++...+.+.|++. +.+..||
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 4566654332 367899999999999999999999993 7788897
No 142
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=48.46 E-value=49 Score=36.30 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=42.3
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCcccc--cCcCCCCeEE
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIV 582 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~i~~~d~~~ 582 (605)
++.+.++...++..|++.|++..+.+ .+++.+ ||..++.| |++++ ..|.++..||
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~-~dqlvL--IfaGrILK----D~dTL~~~gI~Dg~TvH 82 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAP-PDQLVL--IYAGRILK----DDDTLKQYGIQDGHTVH 82 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCC-hhHeee--eecCcccc----ChhhHHHcCCCCCcEEE
Confidence 58899999999999999999999988 777766 56666655 34444 4777776654
No 143
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=47.99 E-value=30 Score=41.22 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=50.8
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...++.|....||++||+.+....+|+.+++||-.- + ..|.| |+++.++++ +|++|=|-.+
T Consensus 13 r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~-----g-rvl~~-~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 13 RTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQ-----G-RVLQD-DKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred ceeEEEechHHHHHHHHHHHHHhcccccccceeeec-----c-eeecc-chhhhhccC-CCeEEEeecc
Confidence 457889999999999999999999999999998752 2 34544 789999999 9998877545
No 144
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=47.22 E-value=1.6e+02 Score=24.15 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=44.4
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCC-CCcEEEEEEECCceeEecccCccccc
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKI-DEGLLLAEVYNHQIFRFFENPAELIS 573 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~ 573 (605)
..+.+.+..++.++.+.+.+..++.. ++.+.++|+...+..+.+.++..|+.
T Consensus 18 kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~ 70 (90)
T smart00314 18 KTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQ 70 (90)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceE
Confidence 56888999999999999999999986 68999999997788888886666664
No 145
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=45.81 E-value=40 Score=27.48 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=39.1
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCC-CCChhhh
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVS-DQTLDDA 229 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~-~~tl~d~ 229 (605)
..+.+.+-.++.+|...+.+.+.++++..+|+........ +..... +.+++++
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~-~~v~l~~e~~me~a 62 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDG-HWVPISGEESLQRA 62 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCc-cEeecCcchHHHHH
Confidence 5577889999999999999999999999999986655442 222222 4455555
No 146
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.68 E-value=62 Score=34.76 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=47.8
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcC---CCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACC---LKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
.+++..++|.. +.+.+....++.++++.|....| +. .++..++ |.. |.+. |+.+|+ .|.++++|
T Consensus 2 kItVKtl~g~~----~~IeV~~~~TV~dLK~kI~~~~g~~~ip-~~~QkLI--y~G---kiL~-Dd~tL~dy~I~e~~~I 70 (378)
T TIGR00601 2 TLTFKTLQQQK----FKIDMEPDETVKELKEKIEAEQGKDAYP-VAQQKLI--YSG---KILS-DDKTVREYKIKEKDFV 70 (378)
T ss_pred EEEEEeCCCCE----EEEEeCCcChHHHHHHHHHHhhCCCCCC-hhHeEEE--ECC---EECC-CCCcHHHcCCCCCCEE
Confidence 45666666653 77888899999999999999988 66 5555442 444 4566 455665 57888887
Q ss_pred EEEE
Q 007395 582 VAYR 585 (605)
Q Consensus 582 ~~~e 585 (605)
++.-
T Consensus 71 vvmv 74 (378)
T TIGR00601 71 VVMV 74 (378)
T ss_pred EEEe
Confidence 7653
No 147
>smart00455 RBD Raf-like Ras-binding domain.
Probab=44.37 E-value=1.1e+02 Score=24.35 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=44.1
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 171 ~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
+++....+.+-+..|+.|++..+|+..|+.++...+...+.+ + .+. .+ .++..-.|+.+.+|.
T Consensus 7 P~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~-k---~ld-l~---~~~~~l~~~el~ve~ 69 (70)
T smart00455 7 PDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEK-K---PLD-LN---QPISSLDGQELVVEE 69 (70)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCC-c---cee-cC---CccccccCceEEEEe
Confidence 444567788889999999999999999999999888874321 1 121 11 223344677788763
No 148
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=44.00 E-value=70 Score=26.09 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCcc
Q 007395 184 ASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI 247 (605)
Q Consensus 184 ~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~ 247 (605)
.++++|+.++|+.|+++....+|-...++ ..+++++ -.. .|.++..+|+ +.++.+|
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDG----T~Vd~Ee-yF~--~LpdnT~lm~-L~~gq~W 76 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDG----TVVDTEE-FFQ--TLGDNTHFMV-LEKGQKW 76 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCC----CEEccHH-HHh--hCCCCCEEEE-ECCCCcc
Confidence 67999999999999998777888775543 3333321 111 2344444444 5566667
No 149
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=43.29 E-value=1.2e+02 Score=24.11 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEE-ecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWD-YFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~-~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...++.+++.+|..++.+.+|+.+++. .+-.-|.. ....+.. ..| +.+++|.+.....+....+
T Consensus 7 ~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~-~wL-~~~k~l~~q~~~~~~~~~l 72 (80)
T PF09379_consen 7 TTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEH-HWL-DLDKKLKKQLKKNNPPFTL 72 (80)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSE-EEE--SSSBGGGSTBTSSSSEEE
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcc-eec-cCcccHHHHcCCCCCCEEE
Confidence 457889999999999999999999997 33344444 1222111 223 3356666654443333333
No 150
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=41.71 E-value=84 Score=24.49 Aligned_cols=62 Identities=11% Similarity=0.222 Sum_probs=43.2
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCC---CCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGI---EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v---~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+..+....+.++.-+.+++.+..+- |+++ |.+.+.+ +.+-|.++.++|+++..|+++.+.++
T Consensus 7 Pv~VEANvnaPLh~v~akALe~sgNvgQP~EN---WElkDe~---G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 7 PVQVEANVNAPLHPVRAKALEQSGNVGQPPEN---WELKDES---GQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred ceeeecCCCCcchHHHHHHHhhccccCCCccc---ceeeccC---CcEeeccchhhhccccccceEEEEee
Confidence 3455566667777888888777653 3444 6544332 34556688999999999999999655
No 151
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=41.58 E-value=1.8e+02 Score=27.24 Aligned_cols=57 Identities=25% Similarity=0.190 Sum_probs=44.1
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFR 563 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~ 563 (605)
.|.+-.++|...|..+.+.++...++.+|...|....++.....+++.-..+..+..
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~ 58 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSP 58 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCC
Confidence 466677888777888999999999999999999999999855545665555555543
No 152
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=41.05 E-value=81 Score=25.22 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=39.2
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEE-ECCceeEecccCccccc--CcCCCCeEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEV-YNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
|.+.+....++.+|++.|....|++ +++.-+.-. +.. +... |+.+++ .|.+++.|..
T Consensus 12 ~~v~v~~~~Tv~~lK~~i~~~tgvp-~~~QKLi~~~~~G---k~l~-D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 12 YSVTTLSEDTVLDLKQFIKTLTGVL-PERQKLLGLKVKG---KPAE-DDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCC-HHHEEEEeecccC---CcCC-CCcCHHHcCCCCCCEEEE
Confidence 7788889999999999999999999 554444321 122 3455 466675 4566666543
No 153
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=40.99 E-value=1.5e+02 Score=22.15 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=47.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
....+.+....++..++.++....+++..++++-.- . ..|.| +.++.+++|..+..+-+.
T Consensus 10 k~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~-----~-~~l~d-~~~l~~~~i~~~~~~~l~ 69 (75)
T KOG0001|consen 10 KTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFG-----G-KPLED-GRTLADYNIQEGSTLHLV 69 (75)
T ss_pred CEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEEC-----C-EECcC-CCcHHHhCCCCCCEEEEE
Confidence 456688888999999999999999999888875542 2 34554 478999999888877664
No 154
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=39.75 E-value=2e+02 Score=23.59 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=35.0
Q ss_pred hchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCcc
Q 007395 183 KASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI 247 (605)
Q Consensus 183 ~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~ 247 (605)
..++++|+.++|+.|+++. ..+|....++ ..+++++ -. ..-+.+.++|-+.++.+|
T Consensus 20 A~sL~eL~~K~~~~l~l~~-~~~lvL~eDG----T~Vd~Ee-yF---~tLp~nt~l~vL~~gq~W 75 (79)
T cd06538 20 ADSLEDLLNKVLDALLLDC-ISSLVLDEDG----TGVDTEE-FF---QALADNTVFMVLGKGQKW 75 (79)
T ss_pred cCCHHHHHHHHHHHcCCCC-ccEEEEecCC----cEEccHH-HH---hhCCCCcEEEEECCCCcc
Confidence 3689999999999999963 4777775543 3343321 11 223344455546677778
No 155
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=39.28 E-value=1.4e+02 Score=23.77 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=41.4
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 171 ~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
+++....+.+-+..|+.+++..+|+.-++.++.+.++..+.. ..+. .++. +..-.|+.+.+|.
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~----k~l~-~~~d---~~~L~~~El~ve~ 70 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEK----KPLD-WDQD---SSSLPGEELRVEK 70 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEE----EEE--TTSB---GGGGTTSEEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCC----cccc-CCCc---eeeecCCEEEEEe
Confidence 444667888999999999999999999999999988865421 1222 2222 2234567888874
No 156
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=39.11 E-value=34 Score=34.47 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=42.7
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
-.+.+++.+++.++...+++..|++ ...+.+|-=...+.. +.+ +.+.|+..+.|.+|+.|.++.
T Consensus 87 Gh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~i-e~i-~~~~t~~~~el~~GdIi~fQ~ 151 (249)
T PF12436_consen 87 GHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMI-EPI-DPNQTFEKAELQDGDIICFQR 151 (249)
T ss_dssp EEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEE-EE---SSSBHHHTT--TTEEEEEEE
T ss_pred eEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEecccee-eEc-CCCCchhhcccCCCCEEEEEe
Confidence 4577899999999999999999998 557777742222222 334 568899999999999999963
No 157
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.22 E-value=19 Score=38.24 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCC----Ccccch--
Q 007395 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG----RAAVAP-- 389 (605)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~----~~~v~P-- 389 (605)
..-++|+.|.||-|+.+|..|.+.+..++...+-..-+..+.+.... ....+..-|+..++...... ..+..|
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~-~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~ 253 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSF-VRSPISEIFGGQLRSVLYQPSNKESATLQPFF 253 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCc-ccCcHHHhhccccccceeccccccccccCccc
Confidence 44689999999999999999999999999887643333333222111 11233333333332221110 011111
Q ss_pred -----------HHHHHHHhhh-----cCCCC--------CCCCccHHHHHHHHHHHHHHHHHh
Q 007395 390 -----------RAFKGKLARF-----APQFS--------GYNQHDSQELLAFLLDGLHEDLNR 428 (605)
Q Consensus 390 -----------~~f~~~l~~~-----~~~F~--------~~~QqDA~Efl~~LLd~L~eel~~ 428 (605)
.....++... .|.+. ...|.++++|..+|+..|+..+-+
T Consensus 254 tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye 316 (420)
T KOG1871|consen 254 TLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYE 316 (420)
T ss_pred eeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHH
Confidence 1122222221 23333 257999999999999999987643
No 158
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=37.09 E-value=21 Score=29.44 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=40.7
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCcccccCcCCCCeEEEEEecCC
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRK 589 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~d~~~~~e~~~~ 589 (605)
..++.++....+.+|++.|++.+++.....+.+ +|.+|+.+.++--.+.|.--|..+...
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~L---------kY~Ddegd~v~ltsd~DL~eai~i~~~ 70 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDL---------KYLDDDEEWVLLTCDADLEECIDVYRS 70 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEE---------EEECCCCCeEEeecHHHHHHHHHHHHH
Confidence 467888888899999999999999862245544 677766666654445554344444443
No 159
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=36.67 E-value=1.4e+02 Score=23.52 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=36.1
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
+.+.+....++.++++.++...|++ ++..-+. |..+ .+. |+.++. .|.++..|+
T Consensus 11 ~~l~v~~~~TV~~lK~~I~~~~gi~-~~~q~Li--~~G~---~L~-D~~~l~~~~i~~~~tv~ 66 (70)
T cd01794 11 VKLSVSSKDTVGQLKKQLQAAEGVD-PCCQRWF--FSGK---LLT-DKTRLQETKIQKDYVVQ 66 (70)
T ss_pred EEEEECCcChHHHHHHHHHHHhCCC-HHHeEEE--ECCe---ECC-CCCCHHHcCCCCCCEEE
Confidence 5677888999999999999999998 5544442 4433 355 455553 455544443
No 160
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=35.81 E-value=1.1e+02 Score=25.29 Aligned_cols=40 Identities=5% Similarity=0.133 Sum_probs=36.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecCCC
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQ 213 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~~~ 213 (605)
...++.+++..|.+++-..+.+.|+|. |++.+|+.+.++.
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~ 54 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEET 54 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCc
Confidence 578999999999999999999999998 9999999877653
No 161
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=35.77 E-value=70 Score=27.29 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=35.7
Q ss_pred eeeeccceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCC---CceeEEEE
Q 007395 157 RVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIE---QEKARIWD 208 (605)
Q Consensus 157 ~vElyp~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~---~~~~RLw~ 208 (605)
.|-+||-.+++. ..-.++.+++..|..++...+...||+. +++++|--
T Consensus 4 ~iKVY~G~L~~~----~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvE 54 (97)
T cd01783 4 VVKVYPGWLRVG----VAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIE 54 (97)
T ss_pred eEEEecCccccC----cceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEE
Confidence 456677665531 1346899999999999999999999987 45565553
No 162
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=35.64 E-value=1.1e+02 Score=24.82 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=32.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCC--CceeEEEEecC
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYFN 211 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~--~~~~RLw~~~~ 211 (605)
....++.+++.+|..++...+.+.|++. ++++.|+....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~ 52 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLG 52 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEEC
Confidence 3568899999999999999999999998 66777776543
No 163
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=34.86 E-value=45 Score=34.29 Aligned_cols=58 Identities=26% Similarity=0.259 Sum_probs=42.2
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChh--hhccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLD--DAMLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~--d~~l~~~~~lll 239 (605)
...+.+..+.+|.+|++.+.+..|+|+++.|+-..+ ..|.+ +.|++ |++..+--.+|+
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaG------KeLs~-~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAG------KELSN-DTTVQNCDLSQQSATHIML 74 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEec------ccccc-Cceeecccccccchhhhhc
Confidence 467788888999999999999999999999988743 34544 45666 444444434443
No 164
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=34.82 E-value=1.4e+02 Score=30.11 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=24.6
Q ss_pred ccCCCCcchhHHHHHHhCChhHHHHHH
Q 007395 323 QNLGNTCFMNSALQCLVHTPDLAQYFL 349 (605)
Q Consensus 323 ~NlGNTCYmNSvLQ~L~~~~~f~~~l~ 349 (605)
.|.-|-|.+-++|=+|.|+..++...-
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~ 32 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVT 32 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHh
Confidence 588899999999999999999998874
No 165
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=34.44 E-value=2.4e+02 Score=22.60 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=45.7
Q ss_pred eEEEEecCCC--CceEEEeChhchHHHHHHHHHHHhCCCCcee-EEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 164 CLKLIDSRDN--SQTVIRLSKKASTRQLYEKVCKLRGIEQEKA-RIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 164 ~l~i~~~~~~--~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~-RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
.++|...+++ .-..+.+.....+..+++.+++.|++++... -+|. . + .=.++.+|..+.-++-|..|-+
T Consensus 4 tfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItn---d--G--~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 4 TFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITN---D--G--VGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEES---S--S---EE-TTSBHHHHHHHT-SEEEE
T ss_pred EEEEEEccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEec---C--C--cccccchhhhhhHhhcCcEeee
Confidence 5778888877 4567888899999999999999999996554 3443 1 1 1123456777766677766544
No 166
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=34.15 E-value=2.5e+02 Score=22.70 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=48.3
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCC-CCCCcEEEE-EEECCceeEecccCccccc
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL-KIDEGLLLA-EVYNHQIFRFFENPAELIS 573 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~-e~~~~~~~~~~~~~~~~~~ 573 (605)
.+.++..++.....-..+.+....++.++.+++.+..++ ..+..+.++ .....+..+.+.++..++.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~ 72 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQ 72 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHH
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHH
Confidence 345566555533334678899999999999999999999 446777776 5566668888886555553
No 167
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=32.94 E-value=2.6e+02 Score=23.73 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=45.4
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEec
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFF 565 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~ 565 (605)
.+.++|-.-...+.-|.+...|..+..+....+....++.....++++|++.++=-.+.
T Consensus 12 ~l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwv 70 (105)
T cd01779 12 HLHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWV 70 (105)
T ss_pred EEEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeee
Confidence 34445533333456688999999999999999999999998889999999988755553
No 168
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=32.52 E-value=3.6e+02 Score=25.40 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=44.7
Q ss_pred cceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecCCCccccccCCCCCChhhhccC
Q 007395 162 XLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 232 (605)
Q Consensus 162 p~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~ 232 (605)
|..++|+... +....+.++...|+.++.+.+|+.+|+. ..-.-||.....+.....+ +.+.++.+....
T Consensus 3 ~~~~~V~l~d-g~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l-~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLD-GTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWL-DPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecC-CCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeC-CCccCHHHhcCC
Confidence 4455555443 3567899999999999999999999997 5556777655432110112 234566665443
No 169
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=32.11 E-value=1.4e+02 Score=24.51 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=34.9
Q ss_pred hchHHHHHHHHHHHhCCCC--ceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCcc
Q 007395 183 KASTRQLYEKVCKLRGIEQ--EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI 247 (605)
Q Consensus 183 ~~tv~~l~~~l~~~~~v~~--~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~ 247 (605)
..++++|+.++|..|+++. ...+|....++ ..+++++ -.. .|.++ +.+|-+.++.+|
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDG----T~VddEe-yF~--tLp~n-T~l~~L~~gq~W 78 (80)
T cd06536 20 ASSLEELRIKACESLGFDSSSAPITLVLAEDG----TIVEDED-YFL--CLPPN-TKFVLLAENEKW 78 (80)
T ss_pred cCCHHHHHHHHHHHhCCCCCCCceEEEEecCC----cEEccHH-HHh--hCCCC-cEEEEECCCCcc
Confidence 3689999999999999983 35888875543 3343321 111 23344 444445666667
No 170
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=30.83 E-value=1.6e+02 Score=23.99 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=40.5
Q ss_pred eEEEeChhchHHHHHHHHHHHhC-C-------CCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRG-I-------EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~-v-------~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+++..|+.++|+.+.+..+ . +++.+-+.-+...... +.+.|+..-|.|+....+-.-++
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~in~~ae~-EEl~DEsrrL~dv~pf~p~Lklv 72 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSCINQFAEQ-EELYDESRRLCDVRPFFPVLKLV 72 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEEEBTTSCE-EEE--TTSBTGGC-BSSSEEEEE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEEecCCCcc-ceeEcchheeeeccCcceEEEEE
Confidence 35788999999999999988643 1 2566666665554444 56777778888888776643333
No 171
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=30.63 E-value=1.8e+02 Score=24.45 Aligned_cols=46 Identities=22% Similarity=0.096 Sum_probs=30.4
Q ss_pred hhchHHHHHHHHHHHhCCCC-ceeEEEEecCCCccccccCCCCCChhhh
Q 007395 182 KKASTRQLYEKVCKLRGIEQ-EKARIWDYFNKQRSTSPLDVSDQTLDDA 229 (605)
Q Consensus 182 ~~~tv~~l~~~l~~~~~v~~-~~~RLw~~~~~~~~~~~l~~~~~tl~d~ 229 (605)
+..++.+|+.++.+.|++++ ..+.|-.....+.+ -.|.. +..|+++
T Consensus 23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~-V~l~~-D~DL~~a 69 (91)
T cd06398 23 LDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDV-VTLVD-DNDLTDA 69 (91)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCE-EEEcc-HHHHHHH
Confidence 46899999999999999985 66777333333333 33433 4456655
No 172
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=30.61 E-value=2.1e+02 Score=23.88 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=37.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecCCCccccccCCCCCChhhh--ccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~--~l~~~~~llle 240 (605)
......++..+++..+.+.+++.+++. .+.+-++. ++.+ ...+|.++.++ ....+..|+|.
T Consensus 16 k~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYi---n~sF---aPspDe~vg~L~~~f~~~~~Liv~ 79 (87)
T PF04110_consen 16 KQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYI---NNSF---APSPDETVGDLYRCFGTNGELIVS 79 (87)
T ss_dssp S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEE---EEEE------TTSBHHHHHHHH-BTTBEEEE
T ss_pred cCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEE---cCcc---CCCchhHHHHHHHHhCCCCEEEEE
Confidence 456788999999999999999999996 45555554 1122 33456788877 33455566664
No 173
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=30.36 E-value=2.1e+02 Score=22.23 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=40.1
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecc----cCccccc--CcCCCCeE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFE----NPAELIS--SIKDDEHI 581 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~~~~~~--~i~~~d~~ 581 (605)
+.+...+|. .+.+.+.+..++..|.++.++..+++..+.+.+ +|. +++.++. .+.++|.|
T Consensus 3 i~v~~~~~~----~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l----------~fdG~~L~~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 3 IKVRSQDGK----EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRL----------IFDGKRLDPNDTPEDLGIEDGDTI 68 (72)
T ss_dssp EEEEETTSE----EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEE----------EETTEEE-TTSCHHHHT-STTEEE
T ss_pred EEEEeCCCC----EEEEEECCCCcHHHHHHHHHHhhCCCccceEEE----------EECCEEcCCCCCHHHCCCCCCCEE
Confidence 444555543 377888899999999999999999983244444 222 1334443 56777776
Q ss_pred EEE
Q 007395 582 VAY 584 (605)
Q Consensus 582 ~~~ 584 (605)
-++
T Consensus 69 dv~ 71 (72)
T PF11976_consen 69 DVI 71 (72)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 174
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=30.20 E-value=2e+02 Score=23.56 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCC--CceeEEEEec
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYF 210 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~--~~~~RLw~~~ 210 (605)
....++.+++.+|..++...+.+.++++ +.+..|+-..
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 3578899999999999999999999997 4566666543
No 175
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=29.70 E-value=1.3e+02 Score=24.05 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=31.8
Q ss_pred EEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCcc
Q 007395 178 IRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRS 215 (605)
Q Consensus 178 i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~ 215 (605)
+.+....++.+|..++.+.|+.+...++|......+..
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~ 53 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDL 53 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCE
Confidence 77888899999999999999999888888876655443
No 176
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=29.34 E-value=1.2e+02 Score=24.07 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=30.5
Q ss_pred ceEEEeC-hhchHHHHHHHHHHHhCCCCceeEEEEecCCCc
Q 007395 175 QTVIRLS-KKASTRQLYEKVCKLRGIEQEKARIWDYFNKQR 214 (605)
Q Consensus 175 ~~~i~vS-~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~ 214 (605)
...+.+. +..++.+|..++++.|+++....++......+.
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d 51 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGD 51 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCC
Confidence 4556666 889999999999999999876777666554443
No 177
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=28.86 E-value=2e+02 Score=22.69 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=37.8
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+.+....++.++++.|+...|++ ++...+. |.. +.+. |+.+++ .|.++..|++
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~Li--~~G---k~L~-D~~tL~~~~i~~~~tl~l 67 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGID-VEDQVLL--LAG---VPLE-DDATLGQCGVEELCTLEV 67 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCC-HHHEEEE--ECC---eECC-CCCCHHHcCCCCCCEEEE
Confidence 5677888899999999999999998 5554432 333 3355 456665 5666666643
No 178
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=28.85 E-value=44 Score=27.71 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=39.1
Q ss_pred EEeChhchHHHHHHHHHHH--hCCC-----CceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 178 IRLSKKASTRQLYEKVCKL--RGIE-----QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 178 i~vS~~~tv~~l~~~l~~~--~~v~-----~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
+.++++.|+++|.+.+++. +.+. ...-.||.-....-...--.+.+++|.|+ +.+|+.|.|
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~V 68 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITV 68 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEE
Confidence 5789999999999999998 4443 34445554222100000013456789999 899999888
No 179
>PLN02560 enoyl-CoA reductase
Probab=28.62 E-value=2.2e+02 Score=29.66 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=47.1
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEE-EEECCc-eeEecccCccccc--CcCCCCeEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA-EVYNHQ-IFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-e~~~~~-~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+....|.. ..+..+.++..++++++++++++..++..+++.=++ +....+ -...+. |+.+++ .+.++..||+
T Consensus 3 I~Vk~~~Gk~-i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 3 VTVVSRSGRE-IIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred EEEEcCCCCe-ecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEEE
Confidence 4444444532 111578889999999999999999886324444443 221121 122344 445554 5677778888
Q ss_pred EEecC
Q 007395 584 YRFDR 588 (605)
Q Consensus 584 ~e~~~ 588 (605)
=.+.+
T Consensus 81 kDLGp 85 (308)
T PLN02560 81 KDLGP 85 (308)
T ss_pred EeCCC
Confidence 77644
No 180
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=28.17 E-value=40 Score=27.74 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=43.8
Q ss_pred EEEEecC--CCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCcccccCcCCCCeEEEEEecCCCCCceEEEEe
Q 007395 522 FTVTLMK--HGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIV 599 (605)
Q Consensus 522 ~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~d~~~~~e~~~~~~~~~~~~~~ 599 (605)
.++.++. ..++.+|.+.+++.|++. .+-+ ||++|+.+++.--.+.|.==|+++....++.+.+.|+
T Consensus 12 ~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~l---------KYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v~ 79 (81)
T cd06396 12 QSFLVSDSENTTWASVEAMVKVSFGLN---DIQI---------KYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMNVY 79 (81)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhCCC---ccee---------EEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEEe
Confidence 5566666 668999999999999997 4444 8888888877533343322355555556655555543
No 181
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=27.39 E-value=1.4e+02 Score=24.51 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=37.5
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCC-ceeEEEEecCCCccccccCCCCCChhhh
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQ-EKARIWDYFNKQRSTSPLDVSDQTLDDA 229 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~-~~~RLw~~~~~~~~~~~l~~~~~tl~d~ 229 (605)
...+.+....++.+|.+.+.+.|++.. ..+.|=.....+.+ ..|.. +..|+++
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~-v~lts-d~DL~ea 64 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEW-VLLTC-DADLEEC 64 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCe-EEeec-HHHHHHH
Confidence 566777888899999999999999975 66776665555555 44432 3455553
No 182
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=26.82 E-value=2.4e+02 Score=24.02 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=37.1
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecC
Q 007395 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFN 211 (605)
Q Consensus 164 ~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~ 211 (605)
.++|+...+ ...++.+.-+.|+.++...+.+.+.++ ..+.+|.....
T Consensus 4 ~IRIFr~D~-Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 4 CIRVFRSDG-TFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKH 51 (97)
T ss_pred EEEEEecCC-cEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEEC
Confidence 466665443 567899999999999999999999988 47788776543
No 183
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=25.21 E-value=1.4e+02 Score=24.88 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=37.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCC--CceeEEEEecCCCccccccCCC
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYFNKQRSTSPLDVS 222 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~--~~~~RLw~~~~~~~~~~~l~~~ 222 (605)
....+.|+...|..++.+.+.+.|.+. +++.-||........ ..|.|.
T Consensus 13 s~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~~Ge~-rkL~d~ 62 (87)
T cd01784 13 SVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYIVHTSGEK-RKLKAT 62 (87)
T ss_pred ceeEEEEecCCCHHHHHHHHHHhccccCCHHHeEEEEEeeCCCE-EECCCc
Confidence 457799999999999999999999987 778888876544332 345443
No 184
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=25.00 E-value=3.5e+02 Score=21.35 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=37.2
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEE-EECCceeEecccCcccccC
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE-VYNHQIFRFFENPAELISS 574 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~ 574 (605)
..+.+.+.++..++.+.++...++...+.+=+.- ....+-..|+. .+.++..
T Consensus 9 ~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~-~~k~l~~ 61 (80)
T PF09379_consen 9 KTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLD-LDKKLKK 61 (80)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE--SSSBGGG
T ss_pred EEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceecc-CcccHHH
Confidence 6788889999999999999999998333333333 34566777777 6777754
No 185
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=24.96 E-value=2e+02 Score=23.92 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=40.9
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCC---ceeEEEEecCCCccccccCCCCCChhhh
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQ---EKARIWDYFNKQRSTSPLDVSDQTLDDA 229 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~---~~~RLw~~~~~~~~~~~l~~~~~tl~d~ 229 (605)
.+...-+.+...+.+.+|+..+.+.+|+.. ....|......+.+ .+|- .|..|.++
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~-VllT-~D~DL~e~ 67 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDI-VLIT-SDSDLVAA 67 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCE-EEEe-ccchHHHH
Confidence 334566777889999999999999999985 57777776666655 4443 35566665
No 186
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.86 E-value=2.4e+02 Score=23.28 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=34.4
Q ss_pred hchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCcc
Q 007395 183 KASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI 247 (605)
Q Consensus 183 ~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~ 247 (605)
..++++|+.+.|+.|+++. ..+|-...++ ..+++++ -.. .|.++..+|+ +.++.+|
T Consensus 20 A~sL~EL~~K~~~~L~~~~-~~~lvLeeDG----T~Vd~Ee-yF~--tLpdnT~lm~-L~~gq~W 75 (81)
T cd06537 20 AASLQELLAKALETLLLSG-VLTLVLEEDG----TAVDSED-FFE--LLEDDTCLMV-LEQGQSW 75 (81)
T ss_pred ccCHHHHHHHHHHHhCCCC-ceEEEEecCC----CEEccHH-HHh--hCCCCCEEEE-ECCCCcc
Confidence 3689999999999999973 3777765543 3333311 111 2344444444 6677778
No 187
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=24.75 E-value=3.1e+02 Score=23.92 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred eEEEEecCCC---CceEEEeChhchHHHHHHHHHHHhC-----CCCceeEEEEecCCCccccccCCCCCCh
Q 007395 164 CLKLIDSRDN---SQTVIRLSKKASTRQLYEKVCKLRG-----IEQEKARIWDYFNKQRSTSPLDVSDQTL 226 (605)
Q Consensus 164 ~l~i~~~~~~---~~~~i~vS~~~tv~~l~~~l~~~~~-----v~~~~~RLw~~~~~~~~~~~l~~~~~tl 226 (605)
+.+++..... ....+.||...|..++.+.+.+.|. +++.++-||.+...... ..|.+.+.-|
T Consensus 23 vmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~-RKL~d~E~PL 92 (112)
T cd01782 23 VMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEE-RRLLDDEKPL 92 (112)
T ss_pred EEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCce-EEcCCcCCCe
No 188
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=23.50 E-value=2.6e+02 Score=22.88 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=41.1
Q ss_pred eEEEeChhchHHHHHHHHHHHhC-C-------CCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRG-I-------EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~-v-------~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+++..|+.++|..+.+... . ++..+-+.-+...... +.+.|+++-|.|+.+..+-.-++
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~Pl~~~L~d~~~Y~F~~in~~~e~-ee~~DEtrRL~dvrp~~p~L~lv 72 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKMPLGQLLQDESSYIFVSVNQTAEI-EEFFDETRRLSDLRLFFPFLKLI 72 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhCCHHHHhCCccceEEEeecCCccc-ccccccchheeeccccceEEEEE
Confidence 35788999999999999988643 2 2555555554433333 44566677788877765543333
No 189
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=38 Score=37.78 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCCCCccccCCCCcchhHHHHHHhCChhHHH
Q 007395 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQ 346 (605)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~ 346 (605)
.....|+.+.+|||+||+.+|.++.++.|.-
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~ 104 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFIY 104 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEee
Confidence 4457889999999999999999999986643
No 190
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.95 E-value=52 Score=27.14 Aligned_cols=70 Identities=10% Similarity=0.201 Sum_probs=42.1
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCcccccCcCCCCeEEEEEecCCCCC-ceEEEEee
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG-KIKLEIVN 600 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~d~~~~~e~~~~~~~-~~~~~~~~ 600 (605)
....+....++..|.+.++..|.+.....+-+ +|.+++.++++--.+.+.--||.+-....+ -+.||||.
T Consensus 12 ~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~---------kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ihvfp 82 (83)
T cd06404 12 MITSIDPSISLEELCNEVRDMCRFHNDQPFTL---------KWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIHVFP 82 (83)
T ss_pred EEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEE---------EEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEEecC
Confidence 34555667889999999999999984334444 555544555532222222234544444444 67777774
No 191
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=21.30 E-value=2.4e+02 Score=32.91 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=67.0
Q ss_pred cceeEeecCCCCC-ceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCC--CCcEEEEEEECCceeEecc
Q 007395 490 PFMYLTLPLPSTV-TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI--DEGLLLAEVYNHQIFRFFE 566 (605)
Q Consensus 490 ~F~~LsL~ip~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~e~~~~~~~~~~~ 566 (605)
.|-.|++|+..-. .+.+.+++. .+|-......++.+.++++..++..++....|... .+++.+-++++.++.+-+.
T Consensus 873 ~yevldvpLseler~r~irl~fl-sngy~h~~l~ef~v~kdyt~~d~l~~v~~Kvg~tde~kk~vlv~e~~n~r~~r~hs 951 (1089)
T COG5077 873 FYEVLDVPLSELERKRLIRLCFL-SNGYQHVYLAEFYVEKDYTAVDHLHIVVTKVGCTDELKKSVLVYEVVNLRPVRGHS 951 (1089)
T ss_pred eeeecCccHHHHhcccceEEEEe-ecCceEEEEEEEeecccccHHHHHHHHHhhcCCcHhhhhcEEEEEEeecceecccC
Confidence 3444555543222 223333333 34554566678889999999999999988777653 5789999999999999998
Q ss_pred cCcccccCcCCCCeEEEEEec
Q 007395 567 NPAELISSIKDDEHIVAYRFD 587 (605)
Q Consensus 567 ~~~~~~~~i~~~d~~~~~e~~ 587 (605)
+...+..+...+.+|.=-+|
T Consensus 952 -l~tl~~d~n~~stlygev~p 971 (1089)
T COG5077 952 -LKTLIIDDNVRSTLYGEVFP 971 (1089)
T ss_pred -ccceEEeccccceeeeEecc
Confidence 56777777777887765555
No 192
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=20.99 E-value=3.3e+02 Score=29.24 Aligned_cols=66 Identities=24% Similarity=0.206 Sum_probs=46.6
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCC--CceeEEEEecCCCcc-ccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYFNKQRS-TSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~--~~~~RLw~~~~~~~~-~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...+.+..++++..|..++..-|.+. ++++.+-.....+-. ..+| .|+|+.|++|..||.|.|+..
T Consensus 11 ~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l--~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 11 QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLL--KDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecc--cccChhhhccccCcEEEEEec
Confidence 34556667778888888888777655 778877765443211 0233 368999999999999999874
No 193
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=20.93 E-value=2.6e+02 Score=22.24 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=33.2
Q ss_pred cCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 527 MKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 527 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+..+++.+|++++++.++...+++.=++-.+..+ .+. ++.++. .+.++..||+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~---~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGK---SLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCc---ccC-CcccHhhcCCCCCCEEEE
Confidence 5678999999999999876436665554333333 333 344454 4566666665
Done!