Query 007395
Match_columns 605
No_of_seqs 363 out of 1887
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 00:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jyu_A Ubiquitin carboxyl-term 100.0 2.5E-43 8.5E-48 348.5 21.6 218 10-248 3-227 (231)
2 4a3p_A Ubiquitin carboxyl-term 100.0 1.2E-42 3.9E-47 340.7 22.0 207 19-248 3-215 (217)
3 2y6e_A Ubiquitin carboxyl-term 100.0 1.8E-39 6.3E-44 344.8 16.3 191 314-504 3-194 (367)
4 2gfo_A Ubiquitin carboxyl-term 100.0 2E-37 7E-42 332.3 13.8 189 315-503 58-247 (396)
5 3nhe_A Ubiquitin carboxyl-term 100.0 7.8E-35 2.7E-39 306.1 17.4 187 314-502 4-192 (348)
6 3i3t_A Ubiquitin carboxyl-term 100.0 1.4E-33 4.8E-38 297.3 12.8 182 317-501 1-199 (355)
7 2ayn_A Ubiquitin carboxyl-term 100.0 8E-32 2.7E-36 289.5 11.1 175 315-501 10-192 (404)
8 1nb8_A Ubiquitin carboxyl-term 100.0 1.6E-29 5.6E-34 266.9 15.5 150 315-502 2-151 (353)
9 1vjv_A Ubiquitin carboxyl-term 100.0 3.7E-29 1.3E-33 269.9 13.9 153 314-501 19-184 (415)
10 3mhs_A Ubiquitin carboxyl-term 100.0 7.7E-29 2.6E-33 272.1 14.8 170 314-502 136-319 (476)
11 3ihp_A Ubiquitin carboxyl-term 100.0 1.5E-28 5.2E-33 284.9 13.4 156 313-501 338-513 (854)
12 1w6v_A Ubiquitin carboxyl-term 99.9 2.6E-27 9E-32 215.2 14.3 111 19-149 27-140 (141)
13 2f1z_A Ubiquitin carboxyl-term 99.9 1.9E-27 6.6E-32 263.7 13.7 150 315-502 171-320 (522)
14 2vhf_A Ubiquitin carboxyl-term 99.6 3E-16 1E-20 161.3 5.4 101 317-424 7-113 (374)
15 2ylm_A Ubiquitin carboxyl-term 99.0 2.7E-09 9.2E-14 117.4 16.9 130 460-604 303-444 (530)
16 4b6w_A Tubulin-specific chaper 97.6 0.00024 8.1E-09 58.2 8.4 66 174-239 15-80 (86)
17 3phx_B Ubiquitin-like protein 97.4 0.00069 2.4E-08 54.2 9.1 64 172-242 13-76 (79)
18 3plu_A Ubiquitin-like modifier 97.4 0.0006 2.1E-08 56.2 8.6 73 160-239 17-90 (93)
19 2kan_A Uncharacterized protein 97.4 0.00064 2.2E-08 56.6 9.0 62 175-242 26-87 (94)
20 2kj6_A Tubulin folding cofacto 97.4 0.00087 3E-08 56.1 9.7 66 174-239 27-92 (97)
21 1wgg_A Ubiquitin carboxyl-term 97.4 0.00036 1.2E-08 58.4 7.0 58 174-239 17-75 (96)
22 2kjr_A CG11242; UBL, ubiquitin 97.4 0.00057 2E-08 57.1 8.2 64 175-239 29-92 (95)
23 1v5o_A 1700011N24RIK protein; 97.4 0.00044 1.5E-08 58.5 7.5 63 174-242 22-84 (102)
24 1sif_A Ubiquitin; hydrophobic 97.3 0.00051 1.7E-08 56.4 7.6 62 174-242 20-81 (88)
25 4fbj_B NEDD8; effector-HOST ta 97.3 0.0005 1.7E-08 56.5 7.6 64 173-243 10-73 (88)
26 3v6c_B Ubiquitin; structural g 97.3 0.00057 2E-08 56.4 7.9 62 172-240 26-87 (91)
27 2kk8_A Uncharacterized protein 97.3 0.00074 2.5E-08 55.0 8.4 61 174-241 21-82 (84)
28 3n3k_B Ubiquitin; hydrolase, p 97.3 0.00058 2E-08 55.4 7.6 62 174-242 14-75 (85)
29 3a9j_A Ubiquitin; protein comp 97.3 0.001 3.5E-08 52.4 8.7 62 174-242 11-72 (76)
30 1ndd_A NEDD8, protein (ubiquit 97.3 0.0011 3.7E-08 52.3 8.7 62 174-242 11-72 (76)
31 1wh3_A 59 kDa 2'-5'-oligoadeny 97.3 0.00093 3.2E-08 54.5 8.4 62 174-242 18-79 (87)
32 1wxv_A BAG-family molecular ch 97.3 0.00076 2.6E-08 55.8 8.0 60 174-239 17-81 (92)
33 3k9o_B Ubiquitin, UBB+1; E2-25 97.3 0.001 3.4E-08 55.4 8.7 65 173-244 11-75 (96)
34 3mtn_B UBA80, ubcep1, ubiquiti 97.3 0.0009 3.1E-08 54.1 8.1 62 174-242 14-75 (85)
35 3shq_A UBLCP1; phosphatase, hy 97.3 0.00034 1.2E-08 71.7 6.8 86 172-270 13-98 (320)
36 2hj8_A Interferon-induced 17 k 97.3 0.0008 2.7E-08 55.2 7.8 62 174-242 15-76 (88)
37 2kd0_A LRR repeats and ubiquit 97.2 0.00073 2.5E-08 55.1 7.4 59 174-239 22-80 (85)
38 4dbg_A Ranbp-type and C3HC4-ty 97.2 0.00076 2.6E-08 57.1 7.7 59 174-239 37-96 (105)
39 2bwf_A Ubiquitin-like protein 97.2 0.0011 3.8E-08 52.5 8.1 62 172-240 12-73 (77)
40 4ajy_B Transcription elongatio 97.2 0.00075 2.6E-08 58.2 7.2 66 175-247 13-85 (118)
41 1v86_A DNA segment, CHR 7, way 97.2 0.0007 2.4E-08 56.5 6.8 59 173-239 26-84 (95)
42 4hcn_B Polyubiquitin, ubiquiti 97.2 0.00086 2.9E-08 56.3 7.4 64 172-242 31-94 (98)
43 3dbh_I NEDD8; cell cycle, acti 97.2 0.00081 2.8E-08 54.9 7.1 63 173-242 22-84 (88)
44 2l7r_A Ubiquitin-like protein 97.2 0.00095 3.3E-08 55.4 7.5 62 174-242 28-89 (93)
45 1wju_A NEDD8 ultimate buster-1 97.2 0.0011 3.8E-08 55.6 7.8 59 174-239 30-88 (100)
46 1v5t_A 8430435I17RIK protein; 97.1 0.00058 2E-08 56.4 5.8 62 174-239 17-79 (90)
47 2fnj_B Transcription elongatio 97.1 0.0011 3.7E-08 57.4 7.6 66 175-247 13-85 (118)
48 4eew_A Large proline-rich prot 97.1 0.0016 5.6E-08 53.2 8.3 61 172-240 26-86 (88)
49 4dwf_A HLA-B-associated transc 97.1 0.0017 5.7E-08 53.4 8.3 62 173-242 15-76 (90)
50 2faz_A Ubiquitin-like containi 97.1 0.0024 8.3E-08 50.8 9.0 59 176-241 16-75 (78)
51 1yqb_A Ubiquilin 3; structural 97.1 0.0022 7.5E-08 54.0 8.9 60 176-242 34-93 (100)
52 2klc_A Ubiquilin-1; ubiquitin- 97.1 0.0021 7E-08 54.3 8.7 60 174-240 35-94 (101)
53 1wy8_A NP95-like ring finger p 97.1 0.0034 1.1E-07 51.4 9.8 62 174-242 19-81 (89)
54 1wjn_A Tubulin-folding protein 97.0 0.0021 7.3E-08 53.7 8.5 67 174-240 23-90 (97)
55 2wyq_A HHR23A, UV excision rep 97.0 0.003 1E-07 51.1 9.1 62 173-241 15-79 (85)
56 1yx5_B Ubiquitin; proteasome, 97.0 0.0024 8.2E-08 53.4 8.7 62 174-242 11-72 (98)
57 3vdz_A Ubiquitin-40S ribosomal 97.0 0.0022 7.4E-08 55.1 8.5 64 172-242 44-107 (111)
58 3m62_B UV excision repair prot 97.0 0.0012 4.1E-08 56.3 6.7 63 173-242 11-73 (106)
59 2uyz_B Small ubiquitin-related 97.0 0.002 6.7E-08 51.5 7.6 63 173-242 13-75 (79)
60 3m63_B Ubiquitin domain-contai 97.0 0.00066 2.3E-08 57.4 4.9 61 172-239 36-96 (101)
61 2daf_A FLJ35834 protein; hypot 97.0 0.003 1E-07 54.2 8.9 75 161-242 14-88 (118)
62 1wx7_A Ubiquilin 3; ubiquitin- 97.0 0.0029 1E-07 53.8 9.0 60 176-242 29-88 (106)
63 2dzi_A Ubiquitin-like protein 97.0 0.0018 6.2E-08 51.8 7.2 60 174-240 18-77 (81)
64 1uel_A HHR23B, UV excision rep 97.0 0.0032 1.1E-07 52.4 8.8 62 174-242 11-75 (95)
65 1j8c_A Ubiquitin-like protein 96.9 0.0029 9.8E-08 55.6 8.8 63 173-242 41-103 (125)
66 2kdi_A Ubiquitin, vacuolar pro 96.9 0.0028 9.7E-08 54.7 8.6 65 174-245 20-84 (114)
67 1we6_A Splicing factor, putati 96.9 0.0028 9.4E-08 54.4 8.3 62 174-242 41-103 (111)
68 1v6e_A Cytoskeleton-associated 96.9 0.0027 9.3E-08 52.8 8.0 65 175-239 20-84 (95)
69 1we7_A SF3A1 protein; structur 96.9 0.0031 1E-07 54.5 8.3 61 175-242 47-107 (115)
70 2dzm_A FAS-associated factor 1 96.8 0.0022 7.5E-08 53.9 6.8 60 174-239 19-78 (100)
71 1uh6_A Ubiquitin-like 5; beta- 96.8 0.0028 9.6E-08 53.2 7.4 60 173-239 38-97 (100)
72 1wx8_A Riken cDNA 4931431F19; 96.8 0.002 7E-08 53.6 6.5 61 173-240 26-86 (96)
73 2ojr_A Ubiquitin; lanthide-bin 96.8 0.0049 1.7E-07 52.8 9.0 62 174-242 46-107 (111)
74 1wyw_B Ubiquitin-like protein 96.8 0.0046 1.6E-07 51.7 8.4 64 172-242 30-93 (97)
75 2lxa_A Ubiquitin-like protein 96.7 0.0019 6.6E-08 52.9 5.6 57 178-241 18-76 (87)
76 1t0y_A Tubulin folding cofacto 96.7 0.0054 1.9E-07 53.6 8.9 65 175-239 19-83 (122)
77 4a20_A Ubiquitin-like protein 96.7 0.0023 8E-08 53.6 6.0 58 176-240 34-93 (98)
78 1wgd_A Homocysteine-responsive 96.7 0.0033 1.1E-07 52.0 6.6 61 175-242 21-85 (93)
79 1ttn_A DC-UBP, dendritic cell- 96.6 0.0034 1.2E-07 53.4 6.6 60 174-240 34-93 (106)
80 3l0w_B Monoubiquitinated proli 96.6 0.0073 2.5E-07 55.9 9.0 63 173-242 10-72 (169)
81 3u30_A Ubiquitin, linear DI-ub 96.4 0.01 3.6E-07 54.9 9.0 65 172-243 29-93 (172)
82 3rt3_B Ubiquitin-like protein 96.4 0.011 3.6E-07 54.0 8.9 63 173-242 91-153 (159)
83 3q3f_A Ribonuclease/ubiquitin 96.3 0.013 4.5E-07 55.0 8.9 64 172-242 114-177 (189)
84 3b08_A Polyubiquitin-C, ubiqui 96.1 0.018 6.3E-07 51.7 8.9 62 174-242 87-148 (152)
85 3rt3_B Ubiquitin-like protein 96.1 0.019 6.6E-07 52.2 8.8 65 173-242 12-76 (159)
86 1x1m_A Ubiquitin-like protein 96.1 0.019 6.5E-07 48.8 8.1 60 174-240 26-97 (107)
87 3b08_A Polyubiquitin-C, ubiqui 96.0 0.021 7.2E-07 51.3 8.7 62 174-242 11-72 (152)
88 3b1l_X E3 ubiquitin-protein li 95.0 0.0012 3.9E-08 52.4 0.0 62 174-242 11-72 (76)
89 3u5e_m 60S ribosomal protein L 95.8 0.0016 5.6E-08 57.4 0.0 62 174-242 11-72 (128)
90 1v2y_A 3300001G02RIK protein; 95.7 0.011 3.7E-07 50.1 5.0 64 173-242 17-95 (105)
91 2kzr_A Ubiquitin thioesterase 95.7 0.014 4.7E-07 47.5 5.5 62 177-240 13-75 (86)
92 3u30_A Ubiquitin, linear DI-ub 95.7 0.018 6.1E-07 53.3 6.7 63 173-242 106-168 (172)
93 1wf9_A NPL4 family protein; be 95.4 0.025 8.4E-07 48.1 6.2 65 176-240 19-92 (107)
94 2kdb_A Homocysteine-responsive 95.3 0.037 1.3E-06 46.3 6.9 58 175-239 37-98 (99)
95 3u5c_f 40S ribosomal protein S 95.3 0.0031 1E-07 57.3 0.0 62 174-242 11-72 (152)
96 2io0_B Small ubiquitin-related 95.2 0.076 2.6E-06 43.6 8.3 64 172-242 14-77 (91)
97 3ai5_A Yeast enhanced green fl 95.2 0.041 1.4E-06 55.6 8.0 61 173-240 243-303 (307)
98 2io1_B Small ubiquitin-related 95.1 0.095 3.2E-06 43.3 8.6 64 172-242 16-79 (94)
99 3a4r_A Nfatc2-interacting prot 95.0 0.12 4.1E-06 41.1 8.9 58 175-239 20-77 (79)
100 1wia_A Hypothetical ubiquitin- 94.9 0.027 9.4E-07 46.5 4.9 58 174-240 18-75 (95)
101 2dzj_A Synaptic glycoprotein S 94.9 0.03 1E-06 45.8 4.9 59 176-239 25-85 (88)
102 1wm3_A Ubiquitin-like protein 94.6 0.12 4E-06 40.4 7.6 61 172-239 10-70 (72)
103 1wgh_A Ubiquitin-like 3, HCG-1 94.0 0.2 6.8E-06 43.0 8.3 59 174-239 27-93 (116)
104 2d07_B Ubiquitin-like protein 93.9 0.23 8E-06 40.8 8.3 62 172-240 26-87 (93)
105 1oqy_A HHR23A, UV excision rep 93.7 0.092 3.2E-06 54.5 6.8 62 174-242 18-83 (368)
106 2gow_A HCG-1 protein, ubiquiti 93.7 0.14 4.8E-06 44.7 6.9 59 174-239 28-94 (125)
107 2eke_C Ubiquitin-like protein 93.7 0.18 6.2E-06 42.6 7.3 68 164-240 33-100 (106)
108 1wz0_A Ubiquitin-like protein 93.2 0.24 8.4E-06 41.6 7.3 61 172-239 33-93 (104)
109 2pjh_A Protein NPL4, nuclear p 93.1 0.06 2E-06 43.1 3.3 64 175-240 15-78 (80)
110 3kyd_D Small ubiquitin-related 92.9 0.46 1.6E-05 40.6 8.7 71 163-240 39-110 (115)
111 2k8h_A Small ubiquitin protein 92.5 0.28 9.5E-06 41.7 6.8 70 163-240 27-96 (110)
112 3qx1_A FAS-associated factor 1 91.8 0.7 2.4E-05 37.0 8.2 68 170-242 14-83 (84)
113 1se9_A Ubiquitin family; ubiqu 91.8 0.5 1.7E-05 41.1 7.6 52 177-235 31-89 (126)
114 2jxx_A Nfatc2-interacting prot 90.6 1.1 3.8E-05 37.1 8.3 58 175-239 38-95 (97)
115 3goe_A DNA repair protein RAD6 90.1 1.6 5.5E-05 34.3 8.2 64 169-239 15-79 (82)
116 3plu_A Ubiquitin-like modifier 89.5 2.1 7.2E-05 35.0 9.0 71 505-586 21-93 (93)
117 3pge_A SUMO-modified prolifera 88.9 1.2 3.9E-05 42.0 8.0 70 164-242 31-100 (200)
118 3tix_A Ubiquitin-like protein 87.5 1 3.5E-05 41.9 6.5 68 163-239 58-125 (207)
119 2dzk_A UBX domain-containing p 86.8 2.9 9.9E-05 35.2 8.6 68 169-240 19-88 (109)
120 3v6c_B Ubiquitin; structural g 85.7 5 0.00017 32.2 9.3 72 502-584 14-87 (91)
121 3mtn_B UBA80, ubcep1, ubiquiti 85.4 4.4 0.00015 31.7 8.7 68 506-584 4-73 (85)
122 4hcn_B Polyubiquitin, ubiquiti 85.2 3.2 0.00011 34.0 8.0 74 500-584 17-92 (98)
123 2dzi_A Ubiquitin-like protein 84.5 4.5 0.00015 31.3 8.3 70 504-584 6-77 (81)
124 2kvr_A Ubiquitin carboxyl-term 84.4 1 3.5E-05 39.4 4.7 41 175-215 57-97 (130)
125 3k9o_B Ubiquitin, UBB+1; E2-25 83.6 5.9 0.0002 32.0 8.9 68 506-584 2-71 (96)
126 4dbg_A Ranbp-type and C3HC4-ty 83.4 7.2 0.00025 32.6 9.3 76 505-587 22-100 (105)
127 4b6w_A Tubulin-specific chaper 83.3 5.5 0.00019 31.9 8.4 67 521-588 16-85 (86)
128 1wjn_A Tubulin-folding protein 82.2 4.1 0.00014 33.3 7.4 67 522-588 25-94 (97)
129 3phx_B Ubiquitin-like protein 82.1 9.1 0.00031 29.5 9.2 69 505-584 4-74 (79)
130 1wj4_A KIAA0794 protein; UBX d 82.0 3.9 0.00013 35.3 7.4 69 169-242 49-119 (124)
131 1v5o_A 1700011N24RIK protein; 81.9 7.1 0.00024 32.2 8.8 75 506-586 8-84 (102)
132 3dbh_I NEDD8; cell cycle, acti 81.3 7.1 0.00024 30.8 8.4 70 503-583 10-81 (88)
133 1wh3_A 59 kDa 2'-5'-oligoadeny 81.1 9.6 0.00033 30.0 9.1 69 505-584 7-77 (87)
134 1uel_A HHR23B, UV excision rep 80.5 15 0.00053 29.5 10.3 70 508-588 3-77 (95)
135 3vdz_A Ubiquitin-40S ribosomal 80.4 10 0.00035 31.8 9.4 70 504-584 34-105 (111)
136 2kjr_A CG11242; UBL, ubiquitin 79.7 16 0.00056 29.6 10.2 62 521-583 29-92 (95)
137 2cr5_A Reproduction 8; UBX dom 79.5 8.1 0.00028 32.4 8.4 73 168-245 28-101 (109)
138 1uh6_A Ubiquitin-like 5; beta- 79.4 5 0.00017 33.3 6.8 69 505-584 28-98 (100)
139 4efo_A Serine/threonine-protei 79.3 2.7 9.2E-05 34.4 5.1 45 164-208 14-58 (94)
140 2bwf_A Ubiquitin-like protein 79.2 12 0.0004 28.5 8.9 67 506-584 5-73 (77)
141 2uyz_B Small ubiquitin-related 79.1 7.7 0.00026 29.9 7.7 68 506-584 4-73 (79)
142 3a9j_A Ubiquitin; protein comp 78.9 6.3 0.00022 29.9 7.1 66 508-584 3-70 (76)
143 2l76_A Nfatc2-interacting prot 78.9 6.9 0.00024 32.0 7.4 68 163-239 22-89 (95)
144 2xzm_9 RPS31E; ribosome, trans 78.6 0.41 1.4E-05 44.6 0.0 57 174-242 11-67 (189)
145 3n3k_B Ubiquitin; hydrolase, p 78.5 7.6 0.00026 30.3 7.7 68 506-584 4-73 (85)
146 1wx7_A Ubiquilin 3; ubiquitin- 78.5 12 0.00041 30.9 9.2 70 504-585 16-87 (106)
147 4fbj_B NEDD8; effector-HOST ta 78.4 10 0.00035 30.1 8.5 67 507-584 2-70 (88)
148 2ojr_A Ubiquitin; lanthide-bin 78.2 14 0.00049 30.8 9.7 69 505-584 35-105 (111)
149 1ndd_A NEDD8, protein (ubiquit 77.9 6.3 0.00022 29.9 6.9 66 508-584 3-70 (76)
150 1yqb_A Ubiquilin 3; structural 77.8 18 0.0006 29.6 9.9 72 501-584 18-91 (100)
151 2wyq_A HHR23A, UV excision rep 77.5 19 0.00064 28.0 9.7 70 505-585 5-79 (85)
152 2faz_A Ubiquitin-like containi 77.3 21 0.00073 27.1 9.9 69 506-584 3-74 (78)
153 2bps_A YUKD protein; ubiquitin 76.9 2 6.8E-05 34.2 3.5 65 172-239 15-80 (81)
154 1wy8_A NP95-like ring finger p 76.6 23 0.00078 27.8 10.1 71 504-584 6-79 (89)
155 2kj6_A Tubulin folding cofacto 76.6 12 0.00043 30.5 8.5 65 521-586 28-95 (97)
156 1sif_A Ubiquitin; hydrophobic 76.5 8.1 0.00028 30.8 7.3 69 505-584 9-79 (88)
157 1v2y_A 3300001G02RIK protein; 76.3 4 0.00014 34.2 5.4 70 504-582 6-91 (105)
158 4eew_A Large proline-rich prot 75.9 15 0.00051 28.9 8.8 68 504-583 16-85 (88)
159 1yx5_B Ubiquitin; proteasome, 75.7 15 0.00052 29.7 9.0 67 508-585 3-71 (98)
160 2kan_A Uncharacterized protein 75.0 22 0.00074 28.7 9.6 70 505-585 15-86 (94)
161 2hj8_A Interferon-induced 17 k 74.3 8.5 0.00029 30.6 6.9 72 505-587 4-77 (88)
162 1wju_A NEDD8 ultimate buster-1 74.1 22 0.00076 29.3 9.4 66 519-591 29-96 (100)
163 1v6e_A Cytoskeleton-associated 74.1 22 0.00074 28.7 9.4 67 521-587 20-88 (95)
164 1t0y_A Tubulin folding cofacto 72.6 37 0.0013 28.8 10.9 68 521-589 19-89 (122)
165 2al3_A TUG long isoform; TUG U 72.1 13 0.00043 30.1 7.1 62 172-240 18-79 (90)
166 2klc_A Ubiquilin-1; ubiquitin- 71.7 28 0.00096 28.4 9.7 69 505-585 25-95 (101)
167 4dwf_A HLA-B-associated transc 71.6 22 0.00075 28.0 8.8 69 505-585 5-75 (90)
168 3v7o_A Minor nucleoprotein VP3 68.6 1 3.5E-05 42.4 0.0 62 171-239 28-89 (227)
169 1wyw_B Ubiquitin-like protein 67.4 13 0.00044 30.2 6.6 69 505-584 21-91 (97)
170 2kk8_A Uncharacterized protein 67.1 18 0.00062 28.5 7.2 68 505-583 10-80 (84)
171 3m63_B Ubiquitin domain-contai 66.7 9 0.00031 31.5 5.5 55 522-583 40-96 (101)
172 1j8c_A Ubiquitin-like protein 66.3 39 0.0013 28.8 9.8 71 505-587 32-104 (125)
173 2kd0_A LRR repeats and ubiquit 66.2 21 0.00071 28.1 7.5 55 522-583 24-80 (85)
174 2daj_A KIAA0977 protein, COBL- 66.1 11 0.00037 30.0 5.4 56 174-233 21-76 (91)
175 1ttn_A DC-UBP, dendritic cell- 63.7 19 0.00064 29.7 7.0 74 503-587 21-96 (106)
176 2kdi_A Ubiquitin, vacuolar pro 63.6 32 0.0011 28.8 8.6 69 506-585 10-80 (114)
177 1wxv_A BAG-family molecular ch 63.4 25 0.00087 27.9 7.6 58 522-585 19-83 (92)
178 1vd2_A Protein kinase C, IOTA 62.7 4.4 0.00015 32.8 2.7 70 522-600 18-88 (89)
179 3m62_B UV excision repair prot 62.6 12 0.00042 30.9 5.7 67 508-585 4-72 (106)
180 1wgy_A RAP guanine nucleotide 62.4 17 0.00058 30.2 6.2 63 522-585 22-85 (104)
181 1oey_A P67-PHOX, neutrophil cy 62.1 19 0.00064 28.7 6.2 61 164-229 7-67 (83)
182 2dzj_A Synaptic glycoprotein S 61.2 24 0.00082 28.1 6.9 72 505-583 10-85 (88)
183 1s3s_G P47 protein; AAA ATPase 57.8 26 0.00089 30.1 7.0 64 171-239 60-124 (127)
184 4a20_A Ubiquitin-like protein 57.2 52 0.0018 26.8 8.4 72 504-584 18-93 (98)
185 2ylm_A Ubiquitin carboxyl-term 56.7 8.3 0.00028 41.9 4.5 67 176-242 38-111 (530)
186 2kc2_A Talin-1, F1; FERM, adhe 56.1 27 0.00093 30.1 6.7 68 171-239 19-119 (128)
187 1wgd_A Homocysteine-responsive 55.6 45 0.0015 26.5 7.8 69 505-582 7-81 (93)
188 3uf8_A Ubiquitin-like protein 53.6 26 0.00091 32.8 6.9 65 172-243 29-93 (209)
189 1v86_A DNA segment, CHR 7, way 53.2 24 0.00081 28.5 5.7 57 521-585 28-86 (95)
190 1we6_A Splicing factor, putati 53.2 54 0.0019 27.0 8.2 56 522-584 43-101 (111)
191 1ip9_A BEM1 protein; ubiquitin 52.6 38 0.0013 26.9 6.4 72 161-239 11-82 (85)
192 3l0w_B Monoubiquitinated proli 52.4 73 0.0025 28.6 9.5 67 507-584 2-70 (169)
193 1wgg_A Ubiquitin carboxyl-term 51.1 47 0.0016 26.8 7.2 55 522-584 19-76 (96)
194 1wx8_A Riken cDNA 4931431F19; 50.8 27 0.00093 27.9 5.7 69 504-584 16-86 (96)
195 3q3f_A Ribonuclease/ubiquitin 50.4 47 0.0016 30.7 7.9 69 505-584 105-175 (189)
196 1qmy_A Protease, leader protea 50.4 6.7 0.00023 34.3 1.9 22 318-339 12-33 (167)
197 2eel_A Cell death activator CI 49.8 1E+02 0.0034 24.9 9.2 73 164-247 11-83 (91)
198 2daf_A FLJ35834 protein; hypot 47.6 53 0.0018 27.8 7.0 55 521-582 28-84 (118)
199 1wia_A Hypothetical ubiquitin- 47.3 40 0.0014 26.9 6.2 69 504-585 6-76 (95)
200 1v5t_A 8430435I17RIK protein; 45.6 28 0.00097 27.6 5.0 58 522-584 19-80 (90)
201 2io1_B Small ubiquitin-related 45.4 1.1E+02 0.0038 24.5 8.6 71 504-585 6-78 (94)
202 2l7r_A Ubiquitin-like protein 45.3 35 0.0012 27.3 5.5 56 522-584 30-87 (93)
203 2kzr_A Ubiquitin thioesterase 44.2 23 0.00078 27.9 4.2 67 508-584 3-75 (86)
204 2dhz_A RAP guanine nucleotide 43.2 45 0.0015 28.4 5.9 64 522-585 22-91 (120)
205 1wm3_A Ubiquitin-like protein 40.0 1.2E+02 0.004 22.8 7.5 67 507-584 3-71 (72)
206 2io0_B Small ubiquitin-related 39.1 1.3E+02 0.0045 23.9 8.0 70 505-585 5-76 (91)
207 2v1y_A Phosphatidylinositol-4, 38.7 98 0.0034 25.8 7.2 71 168-239 24-102 (108)
208 1x1m_A Ubiquitin-like protein 37.0 1.7E+02 0.0058 23.8 9.3 72 506-585 13-98 (107)
209 3ix6_A TS, tsase, thymidylate 36.9 7.2 0.00025 39.9 0.0 63 173-242 30-92 (360)
210 3a4r_A Nfatc2-interacting prot 35.8 1.5E+02 0.005 22.8 8.3 70 505-584 7-78 (79)
211 3u5e_m 60S ribosomal protein L 34.5 8.3 0.00029 33.2 0.0 56 522-584 13-70 (128)
212 3mp2_A Non-structural protein 33.4 46 0.0016 31.3 4.9 71 317-420 11-81 (211)
213 3ai5_A Yeast enhanced green fl 33.0 90 0.0031 31.1 7.3 55 522-583 246-302 (307)
214 1wf9_A NPL4 family protein; be 32.8 63 0.0022 26.5 5.3 71 506-584 8-92 (107)
215 1wgr_A Growth factor receptor- 32.6 1.5E+02 0.005 24.3 7.3 66 503-572 7-73 (100)
216 1we7_A SF3A1 protein; structur 32.5 88 0.003 25.9 6.2 56 522-584 48-105 (115)
217 3ivf_A Talin-1; FERM domain, c 32.2 1E+02 0.0034 31.4 7.8 73 163-239 4-81 (371)
218 4a3p_A Ubiquitin carboxyl-term 31.5 1.9E+02 0.0064 27.0 9.0 71 520-591 140-212 (217)
219 1ef1_A Moesin; membrane, FERM 31.1 1.7E+02 0.0059 28.3 9.2 77 162-242 1-78 (294)
220 2d07_B Ubiquitin-like protein 30.6 1.9E+02 0.0064 23.0 7.7 71 504-585 16-88 (93)
221 2r2o_A Plexin-B1; effector dom 30.0 2.4E+02 0.0081 24.5 8.4 81 157-239 19-125 (138)
222 4da1_A Protein phosphatase 1K, 29.8 11 0.00038 39.0 0.0 64 172-242 38-101 (389)
223 1wz0_A Ubiquitin-like protein 29.4 1.7E+02 0.0057 24.0 7.3 70 504-584 23-94 (104)
224 2fe8_A PP1AB, ORF1AB, replicas 28.5 75 0.0025 31.8 5.7 76 316-420 99-175 (315)
225 3onh_A Ubiquitin-activating en 28.0 1.6E+02 0.0054 25.2 6.8 59 176-239 8-76 (127)
226 2lxa_A Ubiquitin-like protein 27.7 2.2E+02 0.0076 22.3 7.7 72 507-587 3-78 (87)
227 2kdb_A Homocysteine-responsive 25.2 2.3E+02 0.0079 22.8 7.4 69 505-581 23-96 (99)
228 3jyu_A Ubiquitin carboxyl-term 25.2 3.4E+02 0.012 25.4 9.7 70 521-591 153-224 (231)
229 1y8x_B Ubiquitin-activating en 24.6 54 0.0019 26.8 3.3 60 175-239 6-81 (98)
230 2eke_C Ubiquitin-like protein 24.3 2.8E+02 0.0096 22.7 7.8 70 504-585 30-101 (106)
231 1f2r_I Inhibitor of caspase-ac 24.1 1.8E+02 0.0062 23.8 6.3 56 184-247 37-94 (100)
232 1oqy_A HHR23A, UV excision rep 21.4 1.7E+02 0.0057 29.9 7.0 73 505-588 7-84 (368)
No 1
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=100.00 E-value=2.5e-43 Score=348.48 Aligned_cols=218 Identities=30% Similarity=0.540 Sum_probs=188.0
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007395 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERP 89 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~q~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P 89 (605)
|-|-|.-...|+.++||++|++|+ +.++++|++|||||++||++|++||+++...... .+....+|
T Consensus 3 ~~~~~~~~~~p~l~~Qr~~i~~l~---~~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~-----------~~~~~~~p 68 (231)
T 3jyu_A 3 MAEGRGSRERPDVETQKTELGALM---GTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYN-----------VGEHNLFP 68 (231)
T ss_dssp ------CCCCCCHHHHHHHHHTTT---TCCCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTT-----------TTCGGGCC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHH---hcCCCCCCEEEEEchHHHHHHHHHhccccccccc-----------ccccCCCC
Confidence 345555567799999999999999 5699999999999999999999999876443111 22335689
Q ss_pred CCCcCcccccCCCCCCCCCcccccccccCCCcEEEeCHHHHHHHHHHhc---CCCCcceeeeeec-CCCceeeeeccceE
Q 007395 90 GPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMISEG-IVNEKRVEVFXLCL 165 (605)
Q Consensus 90 GpIdNs~Ll~~~~~~~~~~~~~Lk~~L~e~~Df~iVp~~vW~~L~~wYG---ggp~I~R~vi~~~-~~~~~~vElyp~~l 165 (605)
|||||++|++. ..+..||++|.++.||++||+++|++|.+||| |||+|.|.|+..+ ..+...||+||+.|
T Consensus 69 GPIDNs~L~~~------~~~~~Lk~~l~e~~Dy~~vp~~vW~~l~~wYG~~~gg~~I~R~vi~~~~~~~~~~vEvyP~~l 142 (231)
T 3jyu_A 69 GPIDNSGLFSD------PESQTLKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLEL 142 (231)
T ss_dssp CSBCCGGGEEE------TTTTEECSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEECSSSCEEEECCSCEEE
T ss_pred CcEehHHHhCc------CCCcccccccccCCCEEEECHHHHHHHHHHhCCCCCCCceEEEEeccCCCCCcceEEEecceE
Confidence 99999999987 23578999999999999999999999999999 8899999999886 34667999999999
Q ss_pred EEEecCCC-CceEEEeChhchHHHHHHHHHHHhCCCCc-eeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe-
Q 007395 166 KLIDSRDN-SQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ- 242 (605)
Q Consensus 166 ~i~~~~~~-~~~~i~vS~~~tv~~l~~~l~~~~~v~~~-~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~- 242 (605)
+++.++++ ...++.+|+.+|+.+|++++|++|+++.+ ++|||+++..++. .+|.+.+.||++++|.+||.|++|++
T Consensus 143 ~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 143 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 99998775 45678899999999999999999999976 7999999988888 88988899999999999999999999
Q ss_pred ecCccc
Q 007395 243 VDNGIS 248 (605)
Q Consensus 243 ~~g~~~ 248 (605)
+||+|+
T Consensus 222 ~dg~WP 227 (231)
T 3jyu_A 222 EDGTWP 227 (231)
T ss_dssp TTSCCC
T ss_pred CCCCCC
Confidence 999995
No 2
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=100.00 E-value=1.2e-42 Score=340.75 Aligned_cols=207 Identities=29% Similarity=0.584 Sum_probs=182.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccc
Q 007395 19 PCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDII 98 (605)
Q Consensus 19 ~~~~~~q~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll 98 (605)
.|+.++||++|++|+ +.++++|++|||||++||++|++||+++...... .+.....||||||++|+
T Consensus 3 ~p~l~~Q~~~i~~l~---~~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~-----------~~~~~~~pGpIdNs~L~ 68 (217)
T 4a3p_A 3 AADLDTQRSDIATLL---KTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQ-----------MGDQNVYPGPIDNSGLL 68 (217)
T ss_dssp CCCHHHHHHHHHHHT---TCCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCTT-----------TTCGGGCCCSBCCGGGB
T ss_pred CCCHHHHHHHHHHHH---hcCCCCCCEEEEEchHHHHHHHHHhccccccccc-----------ccccCCCCCcEehHHhh
Confidence 699999999999999 5699999999999999999999999886543211 22345689999999999
Q ss_pred cCCCCCCCCCcccccccccCCCcEEEeCHHHHHHHHHHhc---CCCCcceeeeeecCCCceeeeeccceEEEEecCCC-C
Q 007395 99 QNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN-S 174 (605)
Q Consensus 99 ~~~~~~~~~~~~~Lk~~L~e~~Df~iVp~~vW~~L~~wYG---ggp~I~R~vi~~~~~~~~~vElyp~~l~i~~~~~~-~ 174 (605)
++ .++..||++|.++.||++||+++|++|.+||| |||+|.|.|+..+. ...||+||+.|+++.++++ .
T Consensus 69 ~~------~~~~~Lk~~l~e~~Dy~~vp~~vW~~l~~wYG~~~ggp~I~R~vi~~~~--~~~vEvyP~~l~l~~~~~~~~ 140 (217)
T 4a3p_A 69 KD------GDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGM--FCKVEVYLTELKLCENGNMNN 140 (217)
T ss_dssp CC------C---CBCSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEETT--EEEECCSCEEEEEEETTEEEE
T ss_pred CC------CCCcccCcCcccCCCEEEECHHHHHHHHHHhCCCCCCCCcceeEEecCC--eeEEEEeccEEEEEecCCCCc
Confidence 86 34689999999999999999999999999999 99999999999864 3899999999999998876 5
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCc-eeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe-ecCccc
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ-VDNGIS 248 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~-~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~-~~g~~~ 248 (605)
..++.+|+.+|+.+|++++|++|+++.+ ++|||+++..++. ++|.+++.||++++|.+||.|+||++ +||+|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~-~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~WP 215 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTF-EPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 215 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEE-EECCCTTSBHHHHTCCTTCEEEEEECCCC-CCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-eecCCCCCCHHHhCCCCCCEEEEEEecCCCCCC
Confidence 6789999999999999999999999976 7999999888888 88988889999999999999999999 999994
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=344.80 Aligned_cols=191 Identities=66% Similarity=1.153 Sum_probs=177.7
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f 392 (605)
...+|++||.|+||||||||+||||+|+|+|+++|+ ..+...++..+|.+..+.++.+|+.|++.||.+...+++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 357899999999999999999999999999999999 6677777788888888999999999999999988899999999
Q ss_pred HHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEE
Q 007395 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (605)
Q Consensus 393 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~ 472 (605)
+.++++..|+|.+++||||||||.+|||.||+++++..++++.+.++.++.++.+.+.+.|..+..++.|+|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EeEEecCCCCCeeeeeccceeEeecCCCCCce
Q 007395 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504 (605)
Q Consensus 473 ~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~ 504 (605)
+++++|..|++.|.++|+|++|+|+||.....
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~ 194 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDR 194 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC----
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCC
Confidence 99999999999999999999999999976543
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2e-37 Score=332.33 Aligned_cols=189 Identities=48% Similarity=0.845 Sum_probs=167.5
Q ss_pred CCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHH
Q 007395 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (605)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~ 393 (605)
..+|++||.|+||||||||+||||+|+|+|++||+ ..+..+++..++++..+.++.+|+.|++.||.+...+++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 46899999999999999999999999999999999 66666777777877788999999999999999988899999999
Q ss_pred HHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEE
Q 007395 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (605)
Q Consensus 394 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~ 473 (605)
.++++.+++|.+++||||||||.+|||.||+++++..+++..+..+.++.++...+.+.|..+...+.++|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99999999999999999999999999999999988766666655566677788889999999999999999999999999
Q ss_pred eEEecCCCCCeeeeeccceeEeecCCCCCc
Q 007395 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVT 503 (605)
Q Consensus 474 s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~ 503 (605)
++++|..|++.|.++|+|++|+|+||....
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~ 247 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSK 247 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSSE
T ss_pred EEEEeCCCCceecccccceeeeeccccccc
Confidence 999999999999999999999999997643
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=7.8e-35 Score=306.09 Aligned_cols=187 Identities=44% Similarity=0.787 Sum_probs=165.3
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHh-cCCCcccchHH
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRA 391 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~v~P~~ 391 (605)
++.+|++||.|+||||||||+||||+|+|+|+++++ ..+....+.. .....+++.+|+.|++.|| .+....++|..
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG--SNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS--CCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC--CCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 457799999999999999999999999999999998 5555444332 2346789999999999999 56678999999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceE
Q 007395 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (605)
Q Consensus 392 f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~ 471 (605)
|+.+++...|.|.+++||||||||.+|||.||+++++...++.....+.+..++.+.+...|..+..++.++|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 99999999999999999999999999999999999988776666656666777888899999999999999999999999
Q ss_pred EEeEEecCCCCCeeeeeccceeEeecCCCCC
Q 007395 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 472 ~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
++++++|..|++.|.++|+|++|+|+||...
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~ 192 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG 192 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSC
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcc
Confidence 9999999999999999999999999999754
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.4e-33 Score=297.31 Aligned_cols=182 Identities=41% Similarity=0.729 Sum_probs=147.0
Q ss_pred CCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCC-cccchHHHHH
Q 007395 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGR-AAVAPRAFKG 394 (605)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-~~v~P~~f~~ 394 (605)
.|++||.|+||||||||+||||+|+|+|+++++ ..+....+.. +...+++.+|+.|+..||.+.. .+++|..|+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~ 77 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVIGALWHPDSCEAVNPTRFRA 77 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCC---CchhHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 378999999999999999999999999999998 4443333221 2245899999999999998754 7899999999
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccc---------------cCCCCCChhhhhhHhhhccccC
Q 007395 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEM---------------KDSGGRPDEEVANECWKNHKAR 459 (605)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~---------------~~~~~~~~~~~a~~~w~~~~~~ 459 (605)
++++..+.|.+++||||||||.+|||.||+++++..++..... .......+...+...|..+..+
T Consensus 78 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T 3i3t_A 78 VFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER 157 (355)
T ss_dssp HHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999987654322111 1112234556778899999999
Q ss_pred CCcccccccceEEEeEEecCCCCCeeeeeccceeEeecCCCC
Q 007395 460 NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 460 ~~s~I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
+.|+|.++|+|+++++++|..|++.|.++|+|++|+|+||..
T Consensus 158 ~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~ 199 (355)
T 3i3t_A 158 EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKK 199 (355)
T ss_dssp CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-
T ss_pred cCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCcc
Confidence 999999999999999999999999999999999999999975
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.97 E-value=8e-32 Score=289.46 Aligned_cols=175 Identities=21% Similarity=0.361 Sum_probs=133.3
Q ss_pred CCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHH
Q 007395 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (605)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~ 394 (605)
...+++||.|+||||||||+||||+|+|+|+++|+. +........+.+...+++++|+.||..||.+. .+++|..|+.
T Consensus 10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~ 87 (404)
T 2ayn_A 10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKR-YAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQ 87 (404)
T ss_dssp -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHT-CCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHH
T ss_pred ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHh-cccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHH
Confidence 456899999999999999999999999999999983 22211111222346789999999999999875 8999999999
Q ss_pred HHhhhcCCCC------CCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCccccccc
Q 007395 395 KLARFAPQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVF 468 (605)
Q Consensus 395 ~l~~~~~~F~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF 468 (605)
++++..|+|. +++||||||||.+|||.||++++.....+. .+..+...|..+...+.++|.++|
T Consensus 88 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~----------~e~~~~~~~~~~~~~~~s~i~~~F 157 (404)
T 2ayn_A 88 FLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV----------KETDSSSASAATPSKKKSLIDQFF 157 (404)
T ss_dssp HHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHT
T ss_pred HHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc----------cccchhhhhhhhccccCchhhhhc
Confidence 9999999998 589999999999999999999854321110 011234567777788889999999
Q ss_pred ceEEEeEEecCCCCCee--eeeccceeEeecCCCC
Q 007395 469 QGQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPST 501 (605)
Q Consensus 469 ~G~~~s~l~C~~C~~~S--~~~e~F~~LsL~ip~~ 501 (605)
+|+++++++|..|++.| .++|+|++|+|+||..
T Consensus 158 ~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~ 192 (404)
T 2ayn_A 158 GVEFETTMKCTESEEEEVTKGKENQLQLSCFINQE 192 (404)
T ss_dssp CEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS
T ss_pred cEEEEEEEEecCCCCccCceeeccCceEEeecCCC
Confidence 99999999999999995 7999999999999974
No 8
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.96 E-value=1.6e-29 Score=266.85 Aligned_cols=150 Identities=24% Similarity=0.362 Sum_probs=126.7
Q ss_pred CCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHH
Q 007395 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (605)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~ 394 (605)
..+|++||.|+||||||||+||||+|+|+|+++++..... . . ....++..+|+.||..|+.+. .+++|..|+.
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~-~--~---~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 74 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-G--D---DSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT-T--S---CTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC-C--C---cccccHHHHHHHHHHHHhhcC-CCCCCHHHHh
Confidence 3578999999999999999999999999999998722111 0 0 112468899999999999865 6789999998
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEe
Q 007395 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (605)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s 474 (605)
+++. +.|.+++||||||||.+|||.||++++.. ...++|.++|+|++++
T Consensus 75 ~~~~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------------------~~~s~i~~~F~g~~~~ 123 (353)
T 1nb8_A 75 SFGW--ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 123 (353)
T ss_dssp HHTC--CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred hcCC--CCCCcccchhHHHHHHHHHHHHHHHhcCC-----------------------------CccchhhhhceeEEEE
Confidence 8753 78999999999999999999999987321 1246899999999999
Q ss_pred EEecCCCCCeeeeeccceeEeecCCCCC
Q 007395 475 TLVCPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 475 ~l~C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
+++|..|++.|.++|+|++|+|+||...
T Consensus 124 ~i~C~~C~~~s~~~e~f~~LsL~i~~~~ 151 (353)
T 1nb8_A 124 YIQCKEVDYRSDRREDYYDIQLSIKGKK 151 (353)
T ss_dssp EEEESSSCCEEEEEEEESCEEECCTTCS
T ss_pred EEEeccCCCeeceeeeeEEEEEEECCCc
Confidence 9999999999999999999999999754
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.96 E-value=3.7e-29 Score=269.86 Aligned_cols=153 Identities=23% Similarity=0.331 Sum_probs=132.0
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCC----ChHHHHHHHHHHHHHHhcCCCcccch
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLG----MHGELALAFGDLLRKLWSSGRAAVAP 389 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~----~~~~l~~~l~~L~~~l~~~~~~~v~P 389 (605)
....+++||.|+||||||||+||||+|+|+|+++|+. +....+..++.+ ...+++.+|+.||..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~-~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILN-YNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHT-CCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHh-cccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 4567899999999999999999999999999999983 222222222211 25689999999999999988799999
Q ss_pred HHHHHHHhhhcCCCC-------CCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCc
Q 007395 390 RAFKGKLARFAPQFS-------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 462 (605)
Q Consensus 390 ~~f~~~l~~~~~~F~-------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s 462 (605)
..|+.+++...|.|. +++||||||||.+|||.||+++.. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------------------------c
Confidence 999999999999998 899999999999999999999732 5
Q ss_pred ccccccceEEEeEEecCCCCCee--eeeccceeEeecCCCC
Q 007395 463 LIVDVFQGQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPST 501 (605)
Q Consensus 463 ~I~~lF~G~~~s~l~C~~C~~~S--~~~e~F~~LsL~ip~~ 501 (605)
+|.++|+ +++++++|..|++.+ .++|+|++|+|+||..
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~ 184 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT 184 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT
T ss_pred hHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc
Confidence 7899999 999999999999997 5999999999999975
No 10
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.96 E-value=7.7e-29 Score=272.06 Aligned_cols=170 Identities=27% Similarity=0.545 Sum_probs=133.5
Q ss_pred CCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCC--------
Q 007395 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGR-------- 384 (605)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-------- 384 (605)
...+|++||.|+||||||||+||||+|+|+|+++++ ..+.......++ ..++.++|..++..||....
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~---~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 212 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSP---DKCFSCALDKIVHELYGALNTKQASSSS 212 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCT---TTCHHHHHHHHHHHHHSCCCC-------
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCc---ccchHHHHHHHHHHHhhccccccccccc
Confidence 357899999999999999999999999999999998 444333333232 34689999999999997432
Q ss_pred -cccchHHHHHHH---hhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCC
Q 007395 385 -AAVAPRAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARN 460 (605)
Q Consensus 385 -~~v~P~~f~~~l---~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~ 460 (605)
..+.|..++..+ ++.++.|.+++||||||||.+|||.||+++.....+. .+.+.......
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~ 276 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQC 276 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSC
T ss_pred ccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccc----------------ccccccccccC
Confidence 256676666555 4889999999999999999999999999987654321 11122233456
Q ss_pred CcccccccceEEEeEEecCCCCCee-eeeccceeEeecCCCCC
Q 007395 461 DSLIVDVFQGQYKSTLVCPVCSKVS-ITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 461 ~s~I~~lF~G~~~s~l~C~~C~~~S-~~~e~F~~LsL~ip~~~ 502 (605)
.++|.++|+|+++++++|..|++.| .++|+|++|+|+||...
T Consensus 277 ~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~ 319 (476)
T 3mhs_A 277 ECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK 319 (476)
T ss_dssp CSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCC
T ss_pred CCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhhh
Confidence 7899999999999999999999997 55999999999998653
No 11
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=284.86 Aligned_cols=156 Identities=26% Similarity=0.429 Sum_probs=133.7
Q ss_pred cCCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCC---------
Q 007395 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------- 383 (605)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------- 383 (605)
+...+|++||.|+||||||||+||||+|+|+|+++|+.... .....++....+++..+|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLE-KIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHH-HHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhh-hhhccccCCccccHHHHHHHHHHHHhcccccccccccc
Confidence 34688999999999999999999999999999999972211 11112333456789999999999999753
Q ss_pred -----------CcccchHHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHh
Q 007395 384 -----------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANEC 452 (605)
Q Consensus 384 -----------~~~v~P~~f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~ 452 (605)
...++|..|+.++++.++.|.+++||||||||.+|||.||++++
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~------------------------- 471 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR------------------------- 471 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-------------------------
T ss_pred ccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc-------------------------
Confidence 34899999999999999999999999999999999999999862
Q ss_pred hhccccCCCcccccccceEEEeEEecCCCCCeeeeeccceeEeecCCCC
Q 007395 453 WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 501 (605)
Q Consensus 453 w~~~~~~~~s~I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~ 501 (605)
..++|.++|+|+++++++|..|++++.++++|++|+|+||..
T Consensus 472 -------~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 472 -------SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp -------TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred -------ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCcc
Confidence 135689999999999999999999999999999999999963
No 12
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.95 E-value=2.6e-27 Score=215.16 Aligned_cols=111 Identities=31% Similarity=0.729 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccc
Q 007395 19 PCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDII 98 (605)
Q Consensus 19 ~~~~~~q~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll 98 (605)
.|++++|+++|+.|+ +.++++|++|||||++||++|++||+++...... ......+||||||++|+
T Consensus 27 ~p~~e~Qr~~I~~l~---~~~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~-----------~~~~~~~pGpIDNs~Ll 92 (141)
T 1w6v_A 27 AADLDTQRSDIATLL---KTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQ-----------MGDQNVYPGPIDNSGLL 92 (141)
T ss_dssp SCCHHHHHHHHHHHH---SSCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSS-----------TTCSTTCCCSBCCTTTB
T ss_pred CCCHHHHHHHHHHHH---HcCCCCCCEEEEECHHHHHHHHHHhcCCcccccc-----------ccccCCCCCCCcCHHHh
Confidence 589999999999999 5689999999999999999999999886433111 12235689999999999
Q ss_pred cCCCCCCCCCcccccccccCCCcEEEeCHHHHHHHHHHhc---CCCCcceeeee
Q 007395 99 QNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMIS 149 (605)
Q Consensus 99 ~~~~~~~~~~~~~Lk~~L~e~~Df~iVp~~vW~~L~~wYG---ggp~I~R~vi~ 149 (605)
+. .....||++|.++.||++||+++|++|.+||| |||+|.|+||.
T Consensus 93 ~~------~~~~~Lk~~L~e~~Dy~lVp~~vW~~L~~wYG~~~ggp~I~R~vi~ 140 (141)
T 1w6v_A 93 KD------GDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVE 140 (141)
T ss_dssp CS------SCTTCBCSSCCTTTTEEEECHHHHHHHHHHSCBCTTCCCCEEECCC
T ss_pred Cc------CccccccccccCCCCEEEECHHHHHHHHHHHCCCCCCCceeEeeec
Confidence 87 23578999999999999999999999999999 89999999985
No 13
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.94 E-value=1.9e-27 Score=263.72 Aligned_cols=150 Identities=24% Similarity=0.366 Sum_probs=124.7
Q ss_pred CCCCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHH
Q 007395 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (605)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~ 394 (605)
..+|++||.|+||||||||+||||+|+|+||++++...... . ....++..+|+.||..|+.+. .+++|..|+.
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~---~---~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 243 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG---D---DSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 243 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS---S---CTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHH
T ss_pred ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC---C---cccchHHHHHHHHHHHHhcCC-CccCcHHHHh
Confidence 46789999999999999999999999999999987221110 0 112468899999999999865 6889999988
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCChhhhhhHhhhccccCCCcccccccceEEEe
Q 007395 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (605)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~~~s 474 (605)
+++ .+.|.+++||||||||.+|||.||++++.. ...++|.++|+|++++
T Consensus 244 ~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~s 292 (522)
T 2f1z_A 244 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 292 (522)
T ss_dssp HTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred hcC--CccCCCcccccHHHHHHHHHHHHHhhccCC-----------------------------ccccchhhheeEEEEE
Confidence 775 378999999999999999999999987421 1246799999999999
Q ss_pred EEecCCCCCeeeeeccceeEeecCCCCC
Q 007395 475 TLVCPVCSKVSITFDPFMYLTLPLPSTV 502 (605)
Q Consensus 475 ~l~C~~C~~~S~~~e~F~~LsL~ip~~~ 502 (605)
+++|..|++.|.++|+|++|+|+||...
T Consensus 293 ~i~C~~C~~~s~~~e~f~~LsL~i~~~~ 320 (522)
T 2f1z_A 293 YIQCKEVDYRSDRREDYYDIQLSIKGKK 320 (522)
T ss_dssp EECCSSSCCCCCEEEEESCEEECCTTCC
T ss_pred EEEcCCCCceeeeeeeeEEEEEEeCCcc
Confidence 9999999999999999999999999754
No 14
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.60 E-value=3e-16 Score=161.28 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHH-HHHHHHHhcCCCcccchHHHHHH
Q 007395 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAF-GDLLRKLWSSGRAAVAPRAFKGK 395 (605)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~L~~~l~~~~~~~v~P~~f~~~ 395 (605)
..++||.|+||||||||+||||+.+|++.+.++ .|....+. ......+..++ +.++..|-. ..+.|..|...
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll-~~~~~~~~---~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~ 79 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVL-LRPKEKND---VEYYSETQELLRTEIVNPLRI---YGYVCATKIMK 79 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHH-HCCCCTTS---CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHH-hCCCCCCc---chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHH
Confidence 358999999999999999999999999999997 33322221 22334788899 899999975 78999999999
Q ss_pred HhhhcCCCC-----CCCCccHHHHHHHHHHHHHH
Q 007395 396 LARFAPQFS-----GYNQHDSQELLAFLLDGLHE 424 (605)
Q Consensus 396 l~~~~~~F~-----~~~QqDA~Efl~~LLd~L~e 424 (605)
|++..|+|+ +++||||+||++.||..|..
T Consensus 80 LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~ 113 (374)
T 2vhf_A 80 LRKILEKVEAASGFTSEEKDPEEFLNILFHHILR 113 (374)
T ss_dssp HHHHHHHHC--------CCCHHHHHHHHHTTTTC
T ss_pred HHHHhHHHhcccCCCccccCHHHHHHHHHHHHhh
Confidence 999999887 38999999999999998864
No 15
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=99.04 E-value=2.7e-09 Score=117.36 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=107.0
Q ss_pred CCcccccccceEEEeEEecCCCCCeeeeeccceeEeecCCCC---CceeeEEEEEecCCCCCceeEEEEecCCCcHhHHH
Q 007395 460 NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST---VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLI 536 (605)
Q Consensus 460 ~~s~I~~lF~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~ 536 (605)
.++.+.++|. ...|+ +.++|+...|+||.. ....+.+++. +...++..+.+.+||.+++.+|.
T Consensus 303 ~~~~L~d~l~--------~~~~~----~~~~l~YevL~ipl~ElE~~r~~kv~w~--~~~~~~~~~~l~vpK~gtV~Dll 368 (530)
T 2ylm_A 303 YEGTLRDLLQ--------FFKPR----QPKKLYYQQLKMKITDFENRRSFKCIWL--NSQFREEEITLYPDKHGCVRDLL 368 (530)
T ss_dssp CCSCHHHHST--------TSCSS----SCCEEEEEECSSCHHHHHSBCCEEEEEE--CTTSCEEEEEECCBTTCBHHHHH
T ss_pred CCCcHHHHhh--------cccCC----CCCeEEEEECCCCHHHHhhCceEEEEEE--CCCCceEEEEEEcCCCCCHHHHH
Confidence 3456778872 23454 468999999999977 6677777766 44445778999999999999999
Q ss_pred HHHHHHcCCCC--CCcEEEEEEECCceeEecccCcccccCcCC--CCeEEEEEecCC-----CCCceEEEEeeeccc
Q 007395 537 LALSTACCLKI--DEGLLLAEVYNHQIFRFFENPAELISSIKD--DEHIVAYRFDRK-----QGGKIKLEIVNRWQE 604 (605)
Q Consensus 537 ~~l~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~--~d~~~~~e~~~~-----~~~~~~~~~~~~~~~ 604 (605)
+.+.+..+++. ..++.+.++++++|++.|. ++.+++.|.+ .+.++|+|+|.. .++...|||+|..+|
T Consensus 369 ~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~ 444 (530)
T 2ylm_A 369 EECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKE 444 (530)
T ss_dssp HHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSS
T ss_pred HHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccC
Confidence 99999999863 6788899999999999999 6889999988 899999999975 566899999998765
No 16
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=97.58 E-value=0.00024 Score=58.24 Aligned_cols=66 Identities=11% Similarity=-0.034 Sum_probs=54.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.++..+|+.+||+++...+|+|++++||..+.....+.+.+.+++.+|.++++.+|..|-|
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 456899999999999999999999999999999987554433244455589999999999999855
No 17
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=97.42 E-value=0.00069 Score=54.20 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+...+.+.++..+|+.+||+++...+++|++++||.. .+ ..|.| +.+|.++++.+|..|.+-++
T Consensus 13 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-----~G-~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-----EG-KPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE-----CC-EECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 3456788999999999999999999999999999986 23 45665 78999999999999888544
No 18
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=97.41 E-value=0.0006 Score=56.22 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=57.4
Q ss_pred eccceEEEEec-CCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEE
Q 007395 160 VFXLCLKLIDS-RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (605)
Q Consensus 160 lyp~~l~i~~~-~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~ll 238 (605)
-.|..++|... ..+....+.+.+.+||.+||+++....|+|++++||+. .+ ..|+| +.||++++|.+|..|-
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-----~G-k~LkD-~~TL~dY~I~dgstLh 89 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-----GG-SVLKD-HISLEDYEVHDQTNLE 89 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TSBTGGGTCCTTCEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-----CC-EEccC-cCCHHHcCCCCCCEEE
Confidence 34555665544 34467889999999999999999999999999999987 22 45666 7899999999999876
Q ss_pred E
Q 007395 239 L 239 (605)
Q Consensus 239 l 239 (605)
|
T Consensus 90 L 90 (93)
T 3plu_A 90 L 90 (93)
T ss_dssp E
T ss_pred E
Confidence 5
No 19
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.40 E-value=0.00064 Score=56.65 Aligned_cols=62 Identities=10% Similarity=0.177 Sum_probs=53.4
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.+.+.++..+|+.+||+++...+++|++++||... + ..|.|.+.+|.++++.+|..|.|.++
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-----G-k~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS-----G-IELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET-----T-EEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC-----C-EECCCCcccHHHCCCCCCCEEEEEEe
Confidence 67889999999999999999999999999999862 3 45666338999999999999888665
No 20
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.40 E-value=0.00087 Score=56.14 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=53.7
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...++.+.+.+|+.+||+++...+|+|++++||.......+....|.+++.+|.++++.+|..|.|
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 368899999999999999999999999999999986532111023445578999999999999877
No 21
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.36 E-value=0.00036 Score=58.41 Aligned_cols=58 Identities=10% Similarity=0.256 Sum_probs=50.5
Q ss_pred Cce-EEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQT-VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~-~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+ .+.++..+|+.+|++++...+|++++++||.. .+ ..|.| + +|.+++|..|..|+|
T Consensus 17 ~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~-----~G-k~L~D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV-----KG-GTLKD-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE-----TT-EECCS-S-CCCSCCCCSSCEEEC
T ss_pred EEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-----CC-cCCCC-C-CHHHCCCCCCCEEEE
Confidence 456 58899999999999999999999999999985 33 46765 5 999999999999999
No 22
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=97.36 E-value=0.00057 Score=57.06 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=52.5
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..++.+...+|+.+||+++...+|+|++++||......... ..|.+++.+|.++++.+|..|.|
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~-~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCV-STMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEE-EECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCccc-ceeCCCCCCHhHCCcCCCCEEEE
Confidence 57889999999999999999999999999999976421111 13444578999999999999877
No 23
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.35 E-value=0.00044 Score=58.54 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=53.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+||+++...++++++++||+.. + ..|.|++.+|.++++.+|..|.|..+
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-----g-k~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM-----E-QLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET-----T-EEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC-----C-EECCCCcccHHHCCCCCCCEEEEEEC
Confidence 456789999999999999999999999999999862 2 45766557999999999999988544
No 24
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=97.35 E-value=0.00051 Score=56.43 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=53.3
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++.+.+++|++++||... + ..|.| +.+|.++++.+|..|.+.++
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-----G-k~L~D-~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET-----T-EECCT-TSBSGGGTCCTTCEEEEEC-
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC-----C-EECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 567889999999999999999999999999999862 3 45665 78999999999999988666
No 25
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=97.35 E-value=0.0005 Score=56.48 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=55.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEee
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~ 243 (605)
...+.+.++..+|+.+|++++...+++|++++||.. .+ ..|.| +.+|.++++.+|..|.|-++.
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-----~G-k~L~D-~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-----SG-KQMND-EKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TT-EECCT-TSBTTTTTCCTTCEEEEECBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE-----CC-eECCC-CCcHHHcCCCCCCEEEEEEEC
Confidence 356788999999999999999999999999999986 23 45665 789999999999999997663
No 26
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.34 E-value=0.00057 Score=56.45 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=53.1
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
++..+.+.++..+|+.+||+++.+.+|++++++||.. .+ ..|.| +.+|.++++.+|.+|.+-
T Consensus 26 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-----~G-k~L~D-~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 26 TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TT-EECCT-TCBTGGGTCCTTCEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-----CC-eECCC-cCcHHHCCCCCCCEEEEE
Confidence 3356788999999999999999999999999999986 23 45665 689999999999998874
No 27
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.34 E-value=0.00074 Score=54.99 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=52.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccc-cCCCCCChhhhccCCCCeEEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~-l~~~~~tl~d~~l~~~~~llle~ 241 (605)
..+.+.++..+|+.+|++++....|+|++++||... + .. |+| +.+|.++++.+|..|.|-+
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-----G-k~lL~D-~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD-----G-IVILRE-DLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET-----T-EECCCS-SSBHHHHTCCTTSCEEEEE
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC-----C-EEecCC-cCCHHHcCCCCCCEEEEEE
Confidence 567889999999999999999999999999999862 3 44 655 7899999999999888743
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.32 E-value=0.00058 Score=55.35 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=53.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++++.+++|++++||+. .. ..|.| +.+|.++++.+|..|.+-++
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-----~g-~~L~d-~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-----TB-EECCT-TCBTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-----CC-eECCC-CCCHHHCCCCCCCEEEEEEe
Confidence 45788999999999999999999999999999997 22 45665 67999999999999998766
No 29
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.29 E-value=0.001 Score=52.43 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=53.3
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
....+.++..+|+.+|++++.+.++++++++||... + ..|.| +.+|.++++.+|..|.+.++
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~-----g-~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC-----C-eECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 457788999999999999999999999999999862 3 45655 78999999999999888655
No 30
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.29 E-value=0.0011 Score=52.30 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=53.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
....+.++..+|+.+|++++.+.+++|++++||... + ..|.| +.+|.++++.+|..|.+.++
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~-----g-~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS-----G-KQMND-EKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC-----C-EECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 457788999999999999999999999999999862 3 45654 68999999999999888655
No 31
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.28 E-value=0.00093 Score=54.49 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=53.3
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++.+.++++++++||... + ..|.| +.+|.++++.+|..|.+.++
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~-----G-k~L~d-~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ-----G-QVLQD-WLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET-----T-EECCS-SSBHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC-----C-EEccC-CCCHHHCCCCCCCEEEEEEe
Confidence 456788999999999999999999999999999862 2 45654 68999999999999888766
No 32
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.28 E-value=0.00076 Score=55.81 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=51.6
Q ss_pred CceEEEeChh-----chHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKK-----ASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~-----~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+.++.. .|+.+|++++...++++++++||... + ..|.|++.+|.++++.+|..|+|
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~-----G-k~L~D~~~~L~~~~i~~g~~i~l 81 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK-----G-KSLKEMETPLSALGIQDGCRVML 81 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET-----T-EEECCSSSBHHHHTCCSSEEEEE
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC-----C-eecCCCcccHHHCCCCCCCEEEE
Confidence 4567888885 99999999999999999999999862 3 56777677899999999999888
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=97.27 E-value=0.001 Score=55.40 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=55.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeec
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~ 244 (605)
...+.+.++..+|+.+|++++.+.++++++++||+. .+ ..|.| +.+|.++++.+|..|.|-++..
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~-----~G-~~L~d-~~tL~~~~i~~~~~i~l~~r~~ 75 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLVLRLR 75 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-----TT-EECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE-----CC-EECCC-CCcHHHcCCCCCCEEEEEEEcC
Confidence 356788999999999999999999999999999986 23 45665 6799999999999999977733
No 34
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.26 E-value=0.0009 Score=54.14 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=53.6
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++.+.+++|++++||+. .. ..|.| +.+|.++++.+|..|.+-++
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~-----~g-~~L~d-~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TT-EECCT-TSBTGGGTCCTTCEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE-----CC-EECCC-CCCHHHcCCCCCCEEEEEEE
Confidence 56788999999999999999999999999999986 22 45665 68999999999999988655
No 35
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=97.26 E-value=0.00034 Score=71.74 Aligned_cols=86 Identities=9% Similarity=0.181 Sum_probs=57.8
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCcccccc
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDS 251 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~~~~~ 251 (605)
.+..+++.++..+|+.+|++++.+.+|||++++||..... ++ ..|+| +.+|.+++|++|.+|+| +|+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~--~G-k~l~D-~~~L~~~~ik~g~~l~L---------~gs 79 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKY--KG-KTAAD-NVKISALELKPNFKLMM---------VGS 79 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBS--SS-SBCCT-TSBTTSSCCC--CEEEE---------ECC
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeeccc--CC-cccCc-cccHHHcCCCCCCEEEE---------Ecc
Confidence 3456889999999999999999999999999999983110 22 45665 68999999999999999 777
Q ss_pred CCCCCccccCCCCCccccc
Q 007395 252 TGNDLALVPIEPSRSSLTI 270 (605)
Q Consensus 252 ~~~~~~~~~~~p~~~~~~~ 270 (605)
++.+....+.+|.+...|+
T Consensus 80 ~~~~i~~~~~~p~~~~~~~ 98 (320)
T 3shq_A 80 TEADIEDACSLPDNIGEVV 98 (320)
T ss_dssp CC----------CCCSCCC
T ss_pred chhhhcccccCCCcCCccc
Confidence 6654322223454444443
No 36
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=97.25 E-value=0.0008 Score=55.21 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=53.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++....++|++++||... + ..|.| +.+|.++++.+|..|.|.++
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-----G-k~L~D-~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE-----G-KPLED-QLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS-----S-SCCCT-TSBHHHHHCSTTCEEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC-----C-EECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 467788999999999999999999999999999852 2 45654 78999999999999988665
No 37
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.25 E-value=0.00073 Score=55.13 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=50.9
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+.++..+|+.+|++++...+++|++++||.. .+ ..|.| +.+|.++++.+|..|.|
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-----~G-k~L~D-~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF-----KG-KVLVE-TSTLKQSDVGSGAKLML 80 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE-----TT-EECCT-TCBTTTTTCCTTEEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE-----CC-eECCC-cCCHHHCCCCCCCEEEE
Confidence 45678899999999999999999999999999985 23 45654 68999999999998887
No 38
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.25 E-value=0.00076 Score=57.11 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=49.3
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhcc-CCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l-~~~~~lll 239 (605)
...++.+.+.+|+.+||+++.+.+|+|++.+| |.+.. .++. ++.||.++++ .+|..+.|
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~gg-----kll~-D~~TL~~ygI~~~G~t~hL 96 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQ-----RLAR-DQETLHSHGVRQNGDSAYL 96 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETT-----EEEC-TTCBTGGGTCCSTTCEEEE
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccC-----eEcc-CcCcHHHcCCCCCCCEEEE
Confidence 46788999999999999999999999999999 76542 3344 4789999999 59987666
No 39
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.22 E-value=0.0011 Score=52.49 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=52.5
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
....+.+.++...|+.+|++++...+|++++++||... + ..|.| +.+|.++++.+|..|.+.
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~-----g-k~L~d-~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS-----G-KILKD-DQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TSBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC-----C-eEcCC-CCCHHHcCCCCCCEEEEE
Confidence 33567889999999999999999999999999999862 3 45665 689999999999988873
No 40
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=97.20 E-value=0.00075 Score=58.19 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=56.9
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCC-------CCeEEEEEeecCcc
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM-------DQDILLEVQVDNGI 247 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~-------~~~llle~~~~g~~ 247 (605)
...+.+...+||.+||+++....|+|++++||+. .+ ..|+| +.||.+++|.. +.+|-|-++.+|.|
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~-----~G-k~LeD-~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~~f 85 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK-----DD-QLLDD-GKTLGECGFTSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE-----TT-EECCT-TSBTTTTTCCGGGSBTTBCEEEEEEECCSSCC
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe-----CC-eECCC-cCCHHHcCCCcCcccCCCCCEEEEEEecCCCc
Confidence 5667888999999999999999999999999996 22 45655 78999999999 88888888888877
No 41
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.18 E-value=0.0007 Score=56.52 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=50.5
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...+.+.++..+|+.+|++++...++++++++||.. +. ..| + +.+|.+++|.+|..|+|
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~-----~G-k~L-d-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-----KG-LVP-E-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS-----SS-BCC-S-SSBHHHHCCCTTEEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-----CC-eeC-C-cCcHHHCCCCCCCEEEE
Confidence 346788999999999999999999999999999984 23 445 4 45999999999999988
No 42
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00086 Score=56.26 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=54.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+...+.+.++..+|+.+||+++...+++|++++||.. .+ ..|.| +.+|.+++|.+|..|.|-++
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-----~G-k~L~D-~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TT-EECCT-TCBSGGGTCCTTEEEEEECB
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-----CC-EECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 3356789999999999999999999999999999986 23 45654 78999999999998888544
No 43
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.18 E-value=0.00081 Score=54.89 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...+.+.++..+|+.+|+++++..+++|++++||.. .+ ..|.| +.+|.++++.+|..|.+-++
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-----~G-~~L~d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-----SG-KQMND-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-----TT-EECCT-TSBGGGGTCCTTCEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-----CC-eECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 356788999999999999999999999999999986 23 45665 78999999999999888433
No 44
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.17 E-value=0.00095 Score=55.43 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=52.8
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++.+..++|++++||... + ..|.| +.+|.++++.+|..|.|-++
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-----G-k~L~D-~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA-----G-APLED-EATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET-----T-EECCT-TSBHHHHTCCSSCEEEEECC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC-----C-EECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 467788999999999999999999999999999862 3 45654 78999999999999888544
No 45
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.16 E-value=0.0011 Score=55.63 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=51.7
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+.+...+|+.+|++++.+.+|+|++++||.. .+ ..|+| +.||.+++|.+|..||+
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~-----~G-KiL~D-~~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVI-----NK-KQLQL-GKTLEEQGVAHNVKAMV 88 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE-----TT-EECCT-TSBHHHHTCCSSEEEEE
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe-----CC-eECCC-CCcHHHcCCCCCCEEEE
Confidence 57889999999999999999999999999999975 23 45665 68999999999999876
No 46
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=97.14 E-value=0.00058 Score=56.40 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=50.7
Q ss_pred CceEE-EeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i-~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+ .++..+|+.+|++++.+.++++++++||..... .+ ..|.| +.+|.+++|.+|..|+|
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~--~G-k~L~D-~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV--KG-KPAEN-DVKLGALKLKPNTKIMM 79 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE--TT-EECCT-TSBHHHHTCCTTEEEEE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc--CC-cCcCC-CCCHHHcCCCCCCEEEE
Confidence 45667 889999999999999999999999999982100 22 45655 68999999999999988
No 47
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=97.13 E-value=0.0011 Score=57.36 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=56.2
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccC-------CCCeEEEEEeecCcc
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ-------MDQDILLEVQVDNGI 247 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~-------~~~~llle~~~~g~~ 247 (605)
...+.+...+|+.+||+++....|+|++++||+. .+ ..|+| +.||.+++|. .+.+|-|-++.+|.|
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~-----~G-k~LeD-~~TLsdy~I~~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK-----DD-QLLDD-GKTLGECGFTSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE-----TT-EECCT-TSBHHHHTCCTTTSBTTBCEEEEEEEBSSSCB
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE-----CC-eECCC-CCCHHHcCcccccccCCCCCEEEEEecCCCce
Confidence 4678899999999999999999999999999995 22 45655 7899999999 688888888877776
No 48
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.11 E-value=0.0016 Score=53.19 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
+...+.+.++..+|+.+||+++...+++|++++||.. .+ ..|.| +.+|.++++ +|.+|.+-
T Consensus 26 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-----~G-k~L~D-~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 26 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-----QG-RVLQD-DKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TSBGGGGTC-TTEEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CC-EECCC-CCcHHHcCC-CCcEEEEE
Confidence 3456788999999999999999999999999999986 23 45665 789999999 78887764
No 49
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=97.11 E-value=0.0017 Score=53.37 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=52.0
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...+.+.++..+|+.+||+++...++++++++||.. .+ ..|.| +.+|.++++ +|..|.|-++
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-----~G-k~L~d-~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-----QG-RVLQD-DKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TSBGGGGTC-TTEEEEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CC-eECCC-CCCHHHcCC-CCcEEEEEec
Confidence 356788999999999999999999999999999986 23 45665 789999999 8888877444
No 50
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.10 E-value=0.0024 Score=50.75 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=50.5
Q ss_pred eEEE-eChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 176 TVIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 176 ~~i~-vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
..+. ++..+|+.+|++++....++|++++||... + ..|.| +.+|.++++.+|..|.+-+
T Consensus 16 ~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~-----g-~~L~d-~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR-----G-KQMED-GHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TCBTTTTTCCTTCEEEEEE
T ss_pred EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC-----C-EECCC-CCCHHHcCCCCCCEEEEEE
Confidence 3788 999999999999999999999999999862 2 45654 6899999999999888754
No 51
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.08 E-value=0.0022 Score=54.01 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=51.6
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+.+.++..+|+.+|++++...++++++++||... + ..|.| +.+|.++++.+|..|.|-++
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-----G-k~L~D-~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA-----G-KILKD-PDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET-----T-EECCT-TSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-----C-EECCC-cCcHHHCCCCCCCEEEEEEc
Confidence 5788999999999999999999999999999862 3 45655 68999999999999888544
No 52
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.07 E-value=0.0021 Score=54.27 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=51.8
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+.++..+|+.+|++++...++++++++||... + ..|.| +.+|.++++.+|..|.|.
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-----G-k~L~D-~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA-----G-KILKD-QDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET-----T-EEECT-TCCTGGGTCCTTCEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC-----C-EECCC-cCcHHHcCCCCCCEEEEE
Confidence 457889999999999999999999999999999762 3 45654 689999999999998884
No 53
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.06 E-value=0.0034 Score=51.36 Aligned_cols=62 Identities=27% Similarity=0.305 Sum_probs=52.9
Q ss_pred CceEE-EeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i-~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+ .++...|+.+|++++...++++++++||... + ..|.| +.+|.++++.+|..|.|-++
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~-----g-k~L~d-~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR-----G-KQLEN-GYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET-----T-EECCS-SSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC-----C-eECCC-CCCHHHCCCCCCCEEEEEEe
Confidence 35778 4999999999999999999999999999862 2 45654 78999999999999888665
No 54
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.05 E-value=0.0021 Score=53.68 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=55.8
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCc-cccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQR-STSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~-~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
....+.+....|+.+||.++...||+|+.++||..+..... ....|.+++.+|..+++.+|+.|.|+
T Consensus 23 ~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 23 QILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp CCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 56778899999999999999999999999999998643222 11346677899999999999999984
No 55
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=97.03 E-value=0.003 Score=51.09 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=52.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHH---hCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~---~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~ 241 (605)
...+.+.++..+|+.+|++++... .+++++++||... + ..|.| +.+|.++++.+|..|.+..
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~-----G-k~L~D-~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA-----G-KILSD-DVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET-----T-EECCT-TSBGGGGCCCTTSEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC-----C-EECcC-CCCHHHcCCCCCCEEEEEE
Confidence 356788999999999999999998 7899999999862 3 45665 6899999999999988853
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.03 E-value=0.0024 Score=53.39 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=53.8
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++...|+.+|++++.+.++++++++||..- + ..|.| +.+|.++++.+|..|.+..+
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~-----G-k~L~D-~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET-----T-EECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-----C-EECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 457789999999999999999999999999999862 3 45655 78999999999999998776
No 57
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=97.02 E-value=0.0022 Score=55.13 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=54.4
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+...+.+.++..+|+.+||++++..+++|++++||+. .+ ..|.| +.+|.++++..|..|.|-++
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-----TT-EECCT-TSBTTTTTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE-----CC-EECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 3356788999999999999999999999999999986 23 45665 67999999999999888655
No 58
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0012 Score=56.27 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=53.8
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+..+.+.++..+|+.+||+++...+|++++++||.. .+ ..|.| +.+|.+++|.+|..|.|.++
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY-----SG-KVLQD-SKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE-----TT-EECCT-TSBTTTTTCCTTCEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-----CC-EECCC-cCCHHHcCCCCCCEEEEEEc
Confidence 356788899999999999999999999999999986 23 45665 78999999999999988533
No 59
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=97.00 E-value=0.002 Score=51.48 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.....+.+++.+|+.+|++++++..++|++++||.. .+ ..|.| +.||.++++.+|..|-+-++
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-----~G-~~L~d-~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-----EG-QRIAD-NHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TCCHHHHTCCTTEEEEEEEC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-----CC-EEeCC-CCCHHHcCCCCCCEEEEEEe
Confidence 356778999999999999999999999999999976 23 45665 68999999999998877544
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00066 Score=57.36 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.+.++..+|+.+|++++...+|++++++||.. .+ ..|.| +.+|.++++.+|..|.|
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY-----SG-KILKD-DQTVESYHIQDGHSVHL 96 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-----TT-EECCT-TSBTTTTTCCTTEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-----CC-EECCC-cCcHHHCCCCCCCEEEE
Confidence 3456778899999999999999999999999999986 23 45665 78999999999999888
No 61
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.003 Score=54.21 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=62.6
Q ss_pred ccceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 161 FXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 161 yp~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
....++|...+....+++.++...|+.+|++.+...+++|.+++||-. .+ ..|+| +.||.++++++|..|=|+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-----~G-KiLKD-~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-----SG-KILKN-NETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-----TT-EEECS-SCCHHHHSCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-----CC-eEcCC-cchHHHcCCCCCCEEEEE
Confidence 345566655555567899999999999999999999999999999886 33 56776 679999999999999888
Q ss_pred Ee
Q 007395 241 VQ 242 (605)
Q Consensus 241 ~~ 242 (605)
.+
T Consensus 87 i~ 88 (118)
T 2daf_A 87 IF 88 (118)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 62
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.99 E-value=0.0029 Score=53.75 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=52.1
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+.+.++..+|+.+||+++...++++++++||... + ..|.| +.+|.+++|.+|..|.|.++
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-----G-k~L~D-~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA-----G-KILKD-PDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET-----T-EECCT-TSCHHHHTCCTTEEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-----C-EECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 6788999999999999999999999999999762 3 45655 78999999999999888665
No 63
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0018 Score=51.83 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=51.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+.++..+|+.+|++++.+.++++++++||... + ..|.| +.+|.++++.+|..|.+-
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~-----g-k~L~d-~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK-----G-KALAD-GKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET-----T-EECCT-TSBGGGGTCCSSBCCEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC-----C-eECCC-CCcHHHcCCCCCCEEEEE
Confidence 456788999999999999999999999999999862 3 45655 689999999999988773
No 64
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.96 E-value=0.0032 Score=52.39 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=52.1
Q ss_pred CceEEEeChhchHHHHHHHHHHH---hCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~---~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++... .|++++++||.. .+ ..|.| +.+|.++++.+|..|.|.++
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~-----~G-k~L~D-~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY-----AG-KILND-DTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE-----TT-EECCT-TSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE-----CC-EECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 45778999999999999999999 689999999986 23 45665 68999999999999888533
No 65
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.95 E-value=0.0029 Score=55.61 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=54.2
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...+.+.++...|+.+||+++...++++++++||... + ..|.| +.+|.+++|.+|.+|.|..+
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-----G-k~L~D-~~tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA-----G-KILKD-QDTLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET-----T-EEEST-TSCGGGTTCSSSEEEEEEEC
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC-----C-EEcCC-CCCHHHcCCCCCCEEEEEec
Confidence 4467889999999999999999999999999999862 3 45654 68999999999999888666
No 66
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0028 Score=54.66 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=55.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecC
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g 245 (605)
....+.++..+|+.+|++++...+++|++++||..- + ..|.| +.+|.++++.+|..|.|.++.-|
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-----G-k~L~D-~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 20 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA-----G-KQLED-GRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TCBTTTTTCCSSCEEEEEECCCS
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC-----C-EECCC-CCcHHHCCCCCCCEEEEEEEcCC
Confidence 567889999999999999999999999999999862 2 45654 78999999999999999777444
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.92 E-value=0.0028 Score=54.42 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=52.8
Q ss_pred CceEEEeCh-hchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSK-KASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~-~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++. .+|+.+|++++...+++|++++||... + ..|.| +.+|.++++.+|..|.|.++
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~-----G-k~L~D-~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK-----A-GFLKD-NMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS-----S-SBCCT-TSBTTTTTCSSSCEEEEECS
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC-----C-EECCC-CCcHHHCCCCCCCEEEEEEE
Confidence 456788997 999999999999999999999999862 2 45655 78999999999999988655
No 68
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.91 E-value=0.0027 Score=52.83 Aligned_cols=65 Identities=17% Similarity=0.088 Sum_probs=52.3
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..++.+...+|+.+||+++...+|+|++++||.......+....|.+++.+|.++++.+|..|.|
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 57889999999999999999999999999999985421111012434578999999999998887
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.88 E-value=0.0031 Score=54.53 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=52.6
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.+.+.++..+|+.+|++++...++++++++||... + ..|.| +.+|.++++.+|..|.|-++
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~-----G-k~L~D-~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 47 GLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE-----G-IFIKD-SNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp EEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET-----T-EEECT-TSBHHHHTCCSSCEEEEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC-----C-EECCC-CCCHHHCCCCCCCEEEEEEE
Confidence 46788899999999999999999999999999862 3 45655 68999999999999888666
No 70
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.0022 Score=53.94 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=50.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+.+.+...+|+.+|+++++..+|||++++||..+.. +.++| +.+|.+++|..|.+|+|
T Consensus 19 k~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~-----gkL~D-~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 19 RNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKT-----GDVED-STVLKSLHLPKNNSLYV 78 (100)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSS-----SCCCT-TSBHHHHCCCSEEEEEE
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCC-----CCCCC-cCCHHHcCCCCCCEEEE
Confidence 46778899999999999999999999999999864322 23554 78999999999988877
No 71
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.84 E-value=0.0028 Score=53.16 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
.....+.+...+||.+||+++....|+|++++||..- + ..|+| +.||.+++|.+|..|-|
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~-----G-k~L~D-~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW-----Y-TIFKD-HVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET-----T-EECCS-SCBHHHHTCCTTEEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC-----C-EECCC-CCCHHHcCCCCCCEEEE
Confidence 3567899999999999999999999999999999862 3 55665 78999999999988766
No 72
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.83 E-value=0.002 Score=53.59 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=52.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
...+.+.++...|+.+|++++...++++++++||... + ..|.| +.+|.++++.+|..|.|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-----G-k~L~D-~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT-----G-KILRD-QDILSQRGILDGSTVHVV 86 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET-----T-EECCT-TSCHHHHTCCTTEEEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC-----C-EECCC-cCCHHHCCCCCCCEEEEE
Confidence 4567889999999999999999999999999999862 3 45654 689999999999988773
No 73
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.80 E-value=0.0049 Score=52.84 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=53.4
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++...|+.+|++++.+.++++++++||... + ..|.| +.+|.++++.+|..|.|.++
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-----G-k~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET-----T-EECCS-SCBTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC-----C-EECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 567788999999999999999999999999999862 3 45655 78999999999999888655
No 74
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.78 E-value=0.0046 Score=51.66 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=54.1
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
....+.+.+++.+|+.+|+++++...|++++++||.. .+ ..|.| +.||.++++..|..|-+-++
T Consensus 30 ~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-----~G-k~L~d-~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 30 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-----EG-QRIAD-NHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TCCHHHHTCCTTCEEEEEES
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-----CC-eEcCC-CCCHHHCCCCCCCEEEEEEe
Confidence 3356789999999999999999999999999999987 23 45665 68999999999998887544
No 75
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0019 Score=52.87 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=47.8
Q ss_pred EEeChhchHHHHHHHH-HHHhCCCCceeEEEEecCCCccccccCCCCCChhhhcc-CCCCeEEEEE
Q 007395 178 IRLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLEV 241 (605)
Q Consensus 178 i~vS~~~tv~~l~~~l-~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l-~~~~~llle~ 241 (605)
+.++..+|+.+||+++ ....|+|++++||+. .+ ..|.| +.+|.++++ .+|..|.|-.
T Consensus 18 v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~~y~I~~~~stl~v~~ 76 (87)
T 2lxa_A 18 HDFSPSDTILQIKQHLISEEKASHISEIKLLL-----KG-KVLHD-NLFLSDLKVTPANSTITVMI 76 (87)
T ss_dssp EECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE-----TT-EECCT-TCBHHHHCCCGGGCEEEEEE
T ss_pred EcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE-----CC-EECcC-cCCHHHcCCCCCCCEEEEEc
Confidence 3456999999999999 888999999999997 33 56765 689999999 6899988843
No 76
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=96.74 E-value=0.0054 Score=53.56 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=52.7
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..++.+....|+.+|+.++...+|+|++++||............|.+++.+|.++++.+|..|.|
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 57889999999999999999999999999999986532111013444578999999999998887
No 77
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=96.72 E-value=0.0023 Score=53.60 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=48.8
Q ss_pred eEEEeChhchHHHHHHHH-HHHhCCCCceeEEEEecCCCccccccCCCCCChhhhcc-CCCCeEEEE
Q 007395 176 TVIRLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLE 240 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l-~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l-~~~~~llle 240 (605)
..+.++..+|+.+||+++ ....|++++++||.. .+ ..|.| +.+|.++++ .+|..|++-
T Consensus 34 i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 34 IEHDFSPSDTILQIKQHLISEEKASHISEIKLLL-----KG-KVLHD-NLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE-----TT-EEECT-TCBGGGSCCBTTBCEEEEE
T ss_pred EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE-----CC-EECcC-cCCHHHcCcCCCCCEEEEE
Confidence 344677999999999999 778899999999987 33 56765 689999999 999998884
No 78
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.66 E-value=0.0033 Score=51.98 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=51.0
Q ss_pred ceEEEeChhchHHHHHHHHHHHh--CCCCceeEEEEecCCCccccccCCCCCChhhh--ccCCCCeEEEEEe
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLR--GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILLEVQ 242 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~--~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~--~l~~~~~llle~~ 242 (605)
...+.+...+|+.+||+++...+ +++++++||.. .+ ..|+| +.+|.++ ++.+|..|.|-++
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~-----~G-k~L~D-~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY-----SG-KLLLD-HQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE-----TT-EECCS-SSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE-----CC-EECcC-cCCHHHHhcCCCCCCEEEEEeC
Confidence 45667779999999999999999 99999999986 23 56665 6899999 9999998888543
No 79
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.63 E-value=0.0034 Score=53.39 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=52.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+.++...|+.+||+++....|++++++||+.. + ..|.| +.+|.++++..|..|.|.
T Consensus 34 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-----G-k~L~D-~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS-----G-RPLTD-KMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET-----T-EECCT-TSHHHHCCCSSSCEEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC-----C-EECCC-CCcHHHcCCCCCCEEEEE
Confidence 457789999999999999999999999999999862 3 45654 789999999999998884
No 80
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=96.57 E-value=0.0073 Score=55.91 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+..+.+.++..+|+.+|++++...+++|++++||.. .+ ..|.| +.+|.++++.+|..|.|-++
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE-----TT-EECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE-----CC-ccccC-cCcHHHcCCCCCCEEEEEEE
Confidence 356788999999999999999999999999999986 23 45665 78999999999999999877
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.41 E-value=0.01 Score=54.90 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEee
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~ 243 (605)
+...+.+.++..+|+.+||+++...++++++++||+.. + ..|+| +.+|.+++|..|..|.|.++.
T Consensus 29 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~-----g-~~L~d-~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 29 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TCBTGGGTCCTTCEEEEEECC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC-----C-ccccc-cCCHhHcCCcccceeeeeecc
Confidence 33567899999999999999999999999999999862 2 45665 789999999999999987773
No 82
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.41 E-value=0.011 Score=54.04 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=54.7
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...+.+.++..+|+.+|++++....|+|++++||.. .+ ..|.| +.+|.++++.+|..|.+-++
T Consensus 91 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-----~G-~~L~d-~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-----EG-KPLED-QLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE-----CC-eecCC-CCCHHHcCCCCCCEEEEEEe
Confidence 356788999999999999999999999999999986 23 45665 78999999999999988766
No 83
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=96.28 E-value=0.013 Score=55.05 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=55.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+...+.+.++..+|+.+||+++...+++|++++||.. .+ ..|.| +.+|.++++.+|.+|.|-++
T Consensus 114 ~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~-----~G-k~L~D-~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 114 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-----TT-EECCT-TCBGGGGTCCTTCEEEECCC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE-----CC-EECCC-CCCHHHCCCCCCCEEEEEEE
Confidence 3456889999999999999999999999999999986 23 45665 78999999999999998555
No 84
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.13 E-value=0.018 Score=51.70 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=53.3
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|+++++...++|++++||... + ..|.| +.+|.++++.+|..|.+.++
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~-----g-~~L~d-~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC-----C-EECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 467889999999999999999999999999999862 2 45654 78999999999999888655
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.08 E-value=0.019 Score=52.24 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...+.+.++..+|+.+|++++...+|+|++++||..+.. + ..|.| +.+|.++++.+|..|.+-++
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~---g-~~L~d-~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPS---G-VALQD-RVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETT---C-CBCCT-TSCGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCC---C-CCCCC-CCCHHHcCCCCCCEEEEEcc
Confidence 356788999999999999999999999999999984311 2 34654 78999999999999988666
No 86
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.06 E-value=0.019 Score=48.75 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=48.6
Q ss_pred CceEEEeC--------h-hchHHHHHHHHHHHh--CCCCce-eEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLS--------K-KASTRQLYEKVCKLR--GIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS--------~-~~tv~~l~~~l~~~~--~v~~~~-~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+.+. . .+|+.+||+++...+ ++++++ +||.. .+ ..|.| +.+|.++++.+|..|.|-
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~-----~G-k~L~D-~~tL~~y~i~~g~~i~lv 97 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY-----CG-RKLKD-DQTLDFYGIQPGSTVHVL 97 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE-----TT-EECCT-TCBHHHHTCCTTCEEEEE
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE-----CC-eECCC-CCcHHHcCCCCCCEEEEE
Confidence 35566644 4 499999999999999 999999 99975 23 45665 689999999999998884
No 87
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.01 E-value=0.021 Score=51.28 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=53.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++...+++|++++||... + ..|.| +.+|.++++.+|..|.+..+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~-----g-~~L~d-~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-EECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC-----C-eECcC-cccHHHhccCCCCeeEEEee
Confidence 467889999999999999999999999999999862 2 45654 78999999999999888766
No 88
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.97 E-value=0.0012 Score=52.37 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=51.1
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++.+.+++|++++||... + ..|.| +.+|.++++.+|..|.+-++
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~-----g-k~L~d-~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA-----G-KELPN-HLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 346678889999999999999999999999999752 2 45654 68999999999998877443
No 89
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=95.76 E-value=0.0016 Score=57.43 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++...+++|++++||+. .+ ..|+| +.||.+++|.+|.+|.|-++
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE-----CC-EECCC-CCchhhhccCCCCEEEEEEE
Confidence 45678899999999999999999999999999985 22 45655 78999999999999888777
No 90
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.72 E-value=0.011 Score=50.11 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=51.2
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCc---------------eeEEEEecCCCccccccCCCCCChhhhccCCCCeE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQE---------------KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~---------------~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~l 237 (605)
...+.+.+...+||.+||+++...+++++. .+||.. .+ ..|.+++.||.+++|.+|..|
T Consensus 17 g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~-----~G-k~L~dD~~tL~dygI~~g~~l 90 (105)
T 1v2y_A 17 GEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS-----AG-EKLTEDRKKLRDYGIRNRDEV 90 (105)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES-----SS-CEECCSSSBHHHHTCCSSEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe-----CC-cCccCCcCCHHHcCCCCCCEE
Confidence 356788999999999999999999998753 457763 22 456666789999999999998
Q ss_pred EEEEe
Q 007395 238 LLEVQ 242 (605)
Q Consensus 238 lle~~ 242 (605)
.+-.+
T Consensus 91 ~lv~~ 95 (105)
T 1v2y_A 91 SFIKK 95 (105)
T ss_dssp EEEEC
T ss_pred EEEeh
Confidence 88544
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=95.72 E-value=0.014 Score=47.48 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=48.5
Q ss_pred EEE-eChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 177 VIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 177 ~i~-vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
.+. ++..+|+.+|++++.+.++++++++||.. ....+. -.+.+++.+|.+++|..|..|.|.
T Consensus 13 ~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~-~~p~k~-l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 13 LLQGLSSRTRLRELQGQIAAITGIAPGSQRILV-GYPPEC-LDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE-SSCCCC-CCCCCSSCBTTTSSCCTTCEEECC
T ss_pred EeeecCCCCCHHHHHHHHHHHhCCCccceEEEe-CCCCcc-cccCCCCCCHHHcCCCCCCEEEEE
Confidence 466 88899999999999999999999999875 222111 112445789999999999998883
No 92
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.65 E-value=0.018 Score=53.31 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=53.1
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
...+.+.++..+|+.+|++++....|+|++++||... + ..|.| +.+|.++++.+|..|.|-++
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~-----g-~~L~D-~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET-----T-EECCT-TSBSGGGTCCTTCEEEECC-
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC-----C-ccCCC-CCcHHHhCCCCCCEEEEEEe
Confidence 3567889999999999999999999999999998862 2 45665 78999999999999888443
No 93
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.42 E-value=0.025 Score=48.09 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=49.9
Q ss_pred eEEEeC-hhchHHHHHHHHHHHhCCCCceeEEEEecCC----Cccc-ccc---CCCCCChhhhccCCCCeEEEE
Q 007395 176 TVIRLS-KKASTRQLYEKVCKLRGIEQEKARIWDYFNK----QRST-SPL---DVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 176 ~~i~vS-~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~----~~~~-~~l---~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+. ..+|+.+|++++...++++++++||...... .... ..| .+++.+|.+++|..|..|.|.
T Consensus 19 ~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~ 92 (107)
T 1wf9_A 19 ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA 92 (107)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEE
Confidence 367888 8999999999999999999999998754321 0000 022 345789999999999998883
No 94
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.33 E-value=0.037 Score=46.30 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=46.9
Q ss_pred ceEEEeChhchHHHHHHHHHHHh-CCC-CceeEEEEecCCCccccccCCCCCChhhh--ccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLR-GIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~-~v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~--~l~~~~~lll 239 (605)
..++.++..+|+.+||+++...+ +.+ ++++||.. .+ ..|+| +.+|.++ ++..|..|-|
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy-----~G-k~L~D-~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY-----SG-RLLPD-HLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE-----TT-EEECT-TSBTHHHHTTTCSEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE-----CC-EECCC-CCCHHHHhcCCCCCCEEEe
Confidence 45788899999999999999864 666 59999986 23 56665 6899999 9999887655
No 95
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=95.27 E-value=0.0031 Score=57.34 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+.+.++..+|+.+|++++...+++|++++||.. .+ ..|.| +.+|.+++|.+|..|.|-++
T Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~G-k~L~D-~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-----AG-KQLED-GRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CC-EEccc-cCcHHHcCCCCCCEEEEEee
Confidence 35678889999999999999999999999999985 22 45665 68999999999999888777
No 96
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=95.22 E-value=0.076 Score=43.62 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=53.6
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+.....+.+.+..++..|++..|+..|+++..+|++. .+ ..|.+ +.|++++++.+|+.|=+-++
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-----dG-~~l~~-~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-----DG-QPINE-TDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-----TT-EECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-----CC-EEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 3456889999999999999999999999999999987 23 45554 68999999999998766554
No 97
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=95.20 E-value=0.041 Score=55.58 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=52.5
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
.....+.++..+|+.+|++++....+++++++||... + ..|.| +.+|.++++.+|..|.|-
T Consensus 243 Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~-----G-k~L~D-~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 243 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-KQLED-GRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET-----T-EECCT-TSBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC-----C-eecCC-CCCHHHcCCCCCCEEEEE
Confidence 3567899999999999999999999999999999862 3 45655 789999999999988874
No 98
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.07 E-value=0.095 Score=43.32 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=53.5
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+.....+.+.+..++..|+++.|+..+++++.+|++. .+ ..|.+ +.|++++++++|+.|-+-++
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F-----dG-~~l~~-~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-----DG-QPINE-TDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-----TT-EECCT-TCCTTTTTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE-----CC-EEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 3356788999999999999999999999999999987 23 45654 68999999999998776555
No 99
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=95.05 E-value=0.12 Score=41.15 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=50.1
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...+.+.+..++..|++..|+..|++++.+|++.- + ..|.+ +.|.+++++.+|+.|-+
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd-----G-~~l~~-~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD-----G-TKLSG-KELPADLGLESGDLIEV 77 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET-----T-EECCS-CCCHHHHTCCTTCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC-----C-EEcCC-CCCHHHcCCCCCCEEEE
Confidence 67899999999999999999999999999999972 3 45554 68999999999998754
No 100
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.93 E-value=0.027 Score=46.51 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=48.2
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
..+.+.++..+|+.+||+++.... ++++||.. .+ ..|.|++.+|.++++.+|..|.|-
T Consensus 18 ~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~-----~G-k~L~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 18 TEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY-----QG-RLLQDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp EEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE-----TT-EECCCSSCBTTTTTCCTTEEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE-----CC-EEccCCcCCHHHcCCCCCCEEEEE
Confidence 456788999999999999999887 88999876 23 567764489999999999988884
No 101
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.88 E-value=0.03 Score=45.80 Aligned_cols=59 Identities=7% Similarity=0.083 Sum_probs=48.1
Q ss_pred eEE-EeChhchHHHHHHHHHHH-hCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 176 TVI-RLSKKASTRQLYEKVCKL-RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 176 ~~i-~vS~~~tv~~l~~~l~~~-~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
..+ .+...+|+.+|++++.+. .+++++++||-... .+ ..|+| +.||.++++.+|..|.+
T Consensus 25 ~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~---~G-k~L~D-~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 25 CFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP---KG-KSLKD-EDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST---TS-CCCCT-TCBTTTSSCCSEEEEEE
T ss_pred eEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC---CC-cCcCC-CCCHHHcCCCCCCEEEE
Confidence 457 899999999999999995 79999999986422 23 45655 68999999999988776
No 102
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=94.61 E-value=0.12 Score=40.38 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=51.3
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
++....+.+.+..++..|+++.|+..|+++..+|++. .+ ..|.+ +.|.+++++++|+.|-+
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-----dG-~~l~~-~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-----DG-QPINE-TDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-----TT-EECCT-TCCTTTTTCCTTEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE-----CC-EEcCC-CCCHHHcCCCCCCEEEE
Confidence 3456789999999999999999999999999999987 23 45554 68999999999987654
No 103
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.98 E-value=0.2 Score=43.05 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=47.1
Q ss_pred CceEEEeChhchHHHHHHHHHH------HhCC--CCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCK------LRGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~------~~~v--~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...++.+...+||.+|++++.. .-++ +++++||.. .+ ..|+| +.||.+++|..+...+|
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy-----~G-K~LeD-~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY-----QG-RFLHG-NVTLGALKLPFGKTTVM 93 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE-----TT-EEECS-SCBTTTTTCCSSCEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE-----CC-cCCCC-CCcHHHcCCCCCCceEE
Confidence 5788999999999999999999 3454 589999987 23 56765 68999999988865444
No 104
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=93.91 E-value=0.23 Score=40.81 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=52.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
+.....+.+.+..++..|++..|+..+++++.+|++.- + ..|.+ +.|+.++++.+|+.|-+-
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd-----G-~~l~~-~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD-----G-QPINE-TDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET-----T-EECCT-TCCTTTTTCCTTEEEEEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC-----C-EEcCC-CCCHHHcCCCCCCEEEEE
Confidence 33567899999999999999999999999999999872 3 45554 689999999999987664
No 105
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.74 E-value=0.092 Score=54.52 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=50.1
Q ss_pred CceEEEeChhchHHHHHHHHHH---HhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeE-EEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCK---LRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI-LLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~---~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~l-lle~~ 242 (605)
..+.+.++..+||.+||++|.. ..+++.+++||.. .+ ..|+| +.+|.+++|..|..| +|-.+
T Consensus 18 k~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy-----~G-K~L~D-~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 18 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY-----AG-KILSD-DVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp EEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES-----SS-SEECS-SSBTTTTCCCTTSCEEEEEEC
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE-----CC-eecCC-cCCHHHcCCCCCCEEEEEEec
Confidence 4567889999999999999999 4569999999985 23 45665 689999999999988 44334
No 106
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=93.70 E-value=0.14 Score=44.65 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=47.4
Q ss_pred CceEEEeChhchHHHHHHHHHH------HhCCC--CceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 174 SQTVIRLSKKASTRQLYEKVCK------LRGIE--QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~------~~~v~--~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...++.++..+||.+|++++.. .-++| ++++||.. .+ ..|+| +.||.+++|..|..++|
T Consensus 28 ~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy-----~G-K~LeD-~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 28 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY-----QG-RFLHG-NVTLGALKLPFGKTTVM 94 (125)
T ss_dssp CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES-----SS-SEEES-SCBTGGGCCCTTSEEEE
T ss_pred CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE-----CC-cCCCC-CCcHHHcCCCCCCceEE
Confidence 6788999999999999999998 45664 88999876 23 45665 68999999998875433
No 107
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=93.68 E-value=0.18 Score=42.59 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=55.0
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 164 ~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
.|+|.. +.....+.+.+..++..|++..|+..|+++..+|++.- + ..|.+ +.|..++++.+|+.|-+-
T Consensus 33 ~IkV~~--~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd-----G-~rl~~-~~Tp~dl~medgD~Idv~ 100 (106)
T 2eke_C 33 NLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD-----G-IRIQA-DQTPEDLDMEDNDIIEAH 100 (106)
T ss_dssp EEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET-----T-EECCT-TCCTTTTTCCTTEEEEEE
T ss_pred EEEEec--CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC-----C-eEcCC-CCCHHHcCCCCCCEEEEE
Confidence 344443 44678899999999999999999999999999999972 3 45554 689999999999987663
No 108
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.15 E-value=0.24 Score=41.63 Aligned_cols=61 Identities=15% Similarity=0.296 Sum_probs=51.9
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
+.....+.|.+..++..|++..|+..+++++.+|++.- + ..|.+ +.|+.++++.+|+.|-+
T Consensus 33 ~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd-----G-~~l~~-~~Tp~dl~medgD~Idv 93 (104)
T 1wz0_A 33 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD-----G-QPINE-TDTPAQLEMEDEDTIDV 93 (104)
T ss_dssp SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS-----S-SBCCT-TSCTTTTTCCTTEEEEE
T ss_pred CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC-----C-EEcCC-CCCHHHcCCCCCCEEEE
Confidence 34567899999999999999999999999999999862 2 45554 68999999999998777
No 109
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=93.09 E-value=0.06 Score=43.11 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=47.3
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
...+.++..+|+.+|++++.+.++++.+.+.+..-... .. .+....+.++.+++|..|+.|.++
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p-~~-~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK-TG-EITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG-GG-GSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC-CC-cccCCCCCCHHHcCCCCCCEEEEe
Confidence 35566889999999999999999999777666532221 12 332336789999999999999884
No 110
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=92.94 E-value=0.46 Score=40.64 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=55.6
Q ss_pred ceEEEEecC-CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 163 LCLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 163 ~~l~i~~~~-~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
.+|+|.... +.....+.+.+..++..|++..|+..|++...+|++.- + ..|.+ +.|..++++.+|+.|-+-
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD-----G-~rI~~-~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE-----G-QRIAD-NHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET-----T-EECCT-TCCTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEEC-----C-eECCC-CCCHHHcCCCCCCEEEEE
Confidence 344443332 33557889999999999999999999999999999972 3 45554 689999999999987663
No 111
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=92.51 E-value=0.28 Score=41.72 Aligned_cols=70 Identities=20% Similarity=0.410 Sum_probs=55.4
Q ss_pred ceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 163 ~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
+.|+|.. .+.....+.+.+..++..|++..|+..+++++.+|++.- + ..|.+ +.|+.++++.+|+.|-+-
T Consensus 27 I~IkVk~-~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd-----G-~~L~~-~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 27 VAVKVVN-ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD-----G-TPIDE-TKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp EEEEEEE-TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS-----S-CBCCS-SSHHHHHHCSSEEEEEEE
T ss_pred EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC-----C-EEcCC-CCCHHHcCCCCCCEEEEE
Confidence 3444433 234568899999999999999999999999999999862 2 45554 689999999999987663
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=91.77 E-value=0.7 Score=37.01 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=51.4
Q ss_pred cCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCcccccc--CCCCCChhhhccCCCCeEEEEEe
Q 007395 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL--DVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 170 ~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l--~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.+++......+...+|+.+|...+.. .+.+...++|+--... ..+ .|.++||.|++|.++..|+||.+
T Consensus 14 lpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPr----k~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 14 TPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPR----RDVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSC----CBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCC----CCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 45555677888899999999999987 5666778888742221 223 36689999999999999999854
No 113
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.76 E-value=0.5 Score=41.11 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=41.6
Q ss_pred EEEeChhchHHHHHHHHHHH-----hCCCC--ceeEEEEecCCCccccccCCCCCChhhhccCCCC
Q 007395 177 VIRLSKKASTRQLYEKVCKL-----RGIEQ--EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQ 235 (605)
Q Consensus 177 ~i~vS~~~tv~~l~~~l~~~-----~~v~~--~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~ 235 (605)
.+.++..+|+.+|++++... -++|+ +++||-. .+ ..|+| +.||.+++|..|.
T Consensus 31 ~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy-----~G-K~LeD-~~TLsdy~I~~~~ 89 (126)
T 1se9_A 31 PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS-----AG-KVLEN-SKTVKDYRSPVSN 89 (126)
T ss_dssp EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE-----TT-EECCT-TSBGGGGSCCTTS
T ss_pred eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE-----CC-eECcC-CCcHHHcCCCcCC
Confidence 68899999999999999653 46775 7899876 23 45665 7899999999884
No 114
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=90.63 E-value=1.1 Score=37.06 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=49.4
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
...+.+.+..++..|.+..|+..+++...+|++.- + ..|. ++.|.+++++++|+.|-+
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD-----G-~rI~-~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD-----G-TKLS-GRELPADLGMESGDLIEV 95 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET-----T-EECC-SCSCHHHHTCCTTEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC-----C-EEcC-CCCCHHHcCCCCCCEEEE
Confidence 57899999999999999999999999999999872 2 4454 478999999999988754
No 115
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=90.09 E-value=1.6 Score=34.26 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=51.4
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCCCc-eeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~-~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
.++......+.+....++.++.+.-|+..+++.+ .+|+-. .+ ..|. ++.++.|+.+.+|+.|=+
T Consensus 15 ~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF-----DG-dRLd-p~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 15 RSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF-----EG-EWLD-PNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE-----TT-EECC-TTSBGGGSSCCTTCEEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE-----cC-cccC-ccCChhhhCCcCCceeee
Confidence 3444456889999999999999999999999977 898776 23 4554 478999999999987644
No 116
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=89.48 E-value=2.1 Score=35.01 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=51.9
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
-+.+++-...|.+ ..+.+....++.+|++.|+...|++ ++...+ ++.. +.+. |+.++. .|.+++.|.
T Consensus 21 mIqI~Vk~~~Gkk----~~v~v~p~DTI~~LK~~I~~k~Gip-~~qQrL--if~G---k~Lk-D~~TL~dY~I~dgstLh 89 (93)
T 3plu_A 21 MIEVVVNDRLGKK----VRVKCLGEDSVGDFKKVLSLQIGTQ-PNKIVL--QKGG---SVLK-DHISLEDYEVHDQTNLE 89 (93)
T ss_dssp EEEEEEECTTSCE----EEEEEETTSBHHHHHHHHHHHHTCC-GGGEEE--EETT---EECC-TTSBTGGGTCCTTCEEE
T ss_pred eEEEEEECCCCCE----EEEEECCcCHHHHHHHHHHHHhCCC-HHHEEE--EeCC---EEcc-CcCCHHHcCCCCCCEEE
Confidence 3455555555653 6788889999999999999999999 666555 3444 4466 566775 788999998
Q ss_pred EEEe
Q 007395 583 AYRF 586 (605)
Q Consensus 583 ~~e~ 586 (605)
.|-+
T Consensus 90 L~~~ 93 (93)
T 3plu_A 90 LYYL 93 (93)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8853
No 117
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=88.85 E-value=1.2 Score=42.03 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=57.2
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 164 ~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.|+|. .+.....+.+.+..++..|++..|+..|++...+|++. .+ ..|.+ +.|.+++++.+|+.|-+-++
T Consensus 31 ~LkV~--~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F-----dG-~rI~~-~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 31 NLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-----DG-IRIQA-DQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp EEEEE--CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE-----TT-EECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEe--cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE-----CC-EEcCC-CCCHHHcCCCCCCEEEEEec
Confidence 44553 35567889999999999999999999999999999997 23 45554 68999999999998777554
No 118
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=87.48 E-value=1 Score=41.85 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=55.8
Q ss_pred ceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 163 ~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
+.|+|. .+.....+.|.+..++..|++..|+..|+++..+|++. .+ ..|.+ +.|..++++.+|+.|=+
T Consensus 58 InLKVk--~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-----DG-qRI~~-ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 58 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-----DG-IEIQA-DQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp EEEEEE--CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-----TT-EECCS-SCCTTTTTCCTTEEEEE
T ss_pred EEEEEe--cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-----CC-eecCC-CCCHHHcCCCCCCEEEE
Confidence 344552 35567889999999999999999999999999999987 23 44554 78999999999998777
No 119
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=86.79 E-value=2.9 Score=35.24 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=52.5
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccC--CCCCChhhhccCCCCeEEEE
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD--VSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~--~~~~tl~d~~l~~~~~llle 240 (605)
..+++......+...+|+.+|.+.+....+.+...+.|.--... ..+. |.++||+|++|.+...|+++
T Consensus 19 RlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPr----k~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 19 RLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPR----REFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp ECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSC----CBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCC----cCCcccccCCCHHHCCCCCceEEEEE
Confidence 34556677889999999999999999988777677777753222 2333 56899999999999888885
No 120
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=85.72 E-value=5 Score=32.20 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=50.6
Q ss_pred CceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCC
Q 007395 502 VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDE 579 (605)
Q Consensus 502 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d 579 (605)
....+.+++...+|.. +.+.+....++.+|++.|.+..|++ +++.-+ ++.. +.+. |+.++. .|.+++
T Consensus 14 ~~~~m~i~Vk~~~g~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL--~~~G---k~L~-D~~tL~~~gi~~g~ 82 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTH----ITLEVEPSDTIENVKAKIQDKEGIP-PDQQRL--IFAG---KQLE-DGRTLSDYNIQKES 82 (91)
T ss_dssp CCCSEEEEEECTTSCE----EEEEECTTCBHHHHHHHHHHHHCCC-GGGCEE--EETT---EECC-TTCBTGGGTCCTTC
T ss_pred CCCeEEEEEEeCCCCE----EEEEECCCCCHHHHHHHHHhhhCCC-hhhEEE--EECC---eECC-CcCcHHHCCCCCCC
Confidence 3456777777777753 6788889999999999999999998 444333 2333 3455 456675 577777
Q ss_pred eEEEE
Q 007395 580 HIVAY 584 (605)
Q Consensus 580 ~~~~~ 584 (605)
.|++.
T Consensus 83 ~i~l~ 87 (91)
T 3v6c_B 83 TLHLV 87 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
No 121
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=85.37 E-value=4.4 Score=31.68 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=47.4
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+++...++. .+.+.+....++.+|++.|++..+++ +++..+. ++. +.+. |+.++. .|.+++.|++
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~qrL~--~~g---~~L~-d~~tL~~~~i~~~~~l~l 72 (85)
T 3mtn_B 4 MQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKWSTLFL 72 (85)
T ss_dssp EEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCC-GGGCEEE--ETT---EECC-TTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcC-hHHEEEE--ECC---EECC-CCCCHHHcCCCCCCEEEE
Confidence 45566666654 26788889999999999999999998 5554443 343 3455 456675 5777777765
Q ss_pred E
Q 007395 584 Y 584 (605)
Q Consensus 584 ~ 584 (605)
.
T Consensus 73 ~ 73 (85)
T 3mtn_B 73 L 73 (85)
T ss_dssp E
T ss_pred E
Confidence 4
No 122
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=85.24 E-value=3.2 Score=34.00 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=49.2
Q ss_pred CCCceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCC
Q 007395 500 STVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKD 577 (605)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~ 577 (605)
......+.+++...+|.. +.+.+....++.+|++.|.+..+++ +++..+. ++. +.+. |+.+|. .|.+
T Consensus 17 ~~~~~~m~I~Vk~~~g~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi--~~G---k~L~-D~~tL~~~~i~~ 85 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKT----ITLEVESSDTIDNVKSKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQK 85 (98)
T ss_dssp -----CCEEEEEETTCCE----EEEECCTTCBHHHHHHHHHHHHCCC-GGGCEEE--ETT---EECC-TTCBSGGGTCCT
T ss_pred CCCCCeEEEEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHhCCC-hhHEEEE--ECC---EECC-CCCcHHHCCCCC
Confidence 334456777777777753 6788889999999999999999998 5444332 344 3455 566675 4667
Q ss_pred CCeEEEE
Q 007395 578 DEHIVAY 584 (605)
Q Consensus 578 ~d~~~~~ 584 (605)
++.|++.
T Consensus 86 g~~i~l~ 92 (98)
T 4hcn_B 86 ESTLHLV 92 (98)
T ss_dssp TEEEEEE
T ss_pred CCEEEEE
Confidence 7766543
No 123
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.50 E-value=4.5 Score=31.34 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=47.5
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+++...+|. .+.+.+....++.+|++.|++..|++ +++.-+ ++.. +.+. |+.++. .|.+++.|
T Consensus 6 ~~m~i~vk~~~g~----~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL--~~~g---k~L~-d~~tL~~~~i~~g~~i 74 (81)
T 2dzi_A 6 SGMQLTVKALQGR----ECSLQVPEDELVSTLKQLVSEKLNVP-VRQQRL--LFKG---KALA-DGKRLSDYSIGPNSKL 74 (81)
T ss_dssp SSEEEEEEETTSC----EEEEEECSSCBHHHHHHHHHHHTCCC-TTTCEE--EETT---EECC-TTSBGGGGTCCSSBCC
T ss_pred CcEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCcC-HHHEEE--EECC---eECC-CCCcHHHcCCCCCCEE
Confidence 3466666666664 25678889999999999999999998 444433 2343 3455 466775 56677666
Q ss_pred EEE
Q 007395 582 VAY 584 (605)
Q Consensus 582 ~~~ 584 (605)
++.
T Consensus 75 ~l~ 77 (81)
T 2dzi_A 75 NLV 77 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 124
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=84.43 E-value=1 Score=39.37 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=35.3
Q ss_pred ceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCcc
Q 007395 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRS 215 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~ 215 (605)
...+.|-+.+++.+|+..+.+.||++++++|||.+...++.
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~ 97 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNG 97 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTT
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCC
Confidence 34678889999999999999999999999999987655443
No 125
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=83.59 E-value=5.9 Score=31.97 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=48.6
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+++...+|.. +.+.+....++.+|++.|++..+++ +++.-+. ++. +.+. |+.++. .|.+++.|++
T Consensus 2 m~i~vk~~~g~~----~~~~v~~~~TV~~LK~~i~~~~gip-~~~qrL~--~~G---~~L~-d~~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 2 MQIFVKTLTGKT----ITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKESTLHL 70 (96)
T ss_dssp CEEEEEETTCCE----EEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEE--ETT---EECC-TTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEeCCCCE----EEEEECCCCCHHHHHHHHHhhhCCC-hhHEEEE--ECC---EECC-CCCcHHHcCCCCCCEEEE
Confidence 345566666643 6788889999999999999999998 6665443 444 3455 456775 5778888876
Q ss_pred E
Q 007395 584 Y 584 (605)
Q Consensus 584 ~ 584 (605)
.
T Consensus 71 ~ 71 (96)
T 3k9o_B 71 V 71 (96)
T ss_dssp E
T ss_pred E
Confidence 5
No 126
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=83.41 E-value=7.2 Score=32.58 Aligned_cols=76 Identities=8% Similarity=0.022 Sum_probs=50.2
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--Cc-CCCCeE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SI-KDDEHI 581 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i-~~~d~~ 581 (605)
.+.+.++..|-......+.+.+....++.+|++.+....|++ ++..-+ ++..+ ... |+.++. .| .+++.+
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip-p~~QRl--i~ggk---ll~-D~~TL~~ygI~~~G~t~ 94 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP-PVLQQW--VIGQR---LAR-DQETLHSHGVRQNGDSA 94 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEE--EETTE---EEC-TTCBTGGGTCCSTTCEE
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC-HHHEEE--eccCe---Ecc-CcCcHHHcCCCCCCCEE
Confidence 444444444332223568899999999999999999999998 443322 23333 334 567775 67 478888
Q ss_pred EEEEec
Q 007395 582 VAYRFD 587 (605)
Q Consensus 582 ~~~e~~ 587 (605)
+.|=+.
T Consensus 95 hL~l~~ 100 (105)
T 4dbg_A 95 YLYLLS 100 (105)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 888654
No 127
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=83.32 E-value=5.5 Score=31.89 Aligned_cols=67 Identities=7% Similarity=-0.129 Sum_probs=46.5
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEE-EEECCceeEecccCccccc--CcCCCCeEEEEEecC
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA-EVYNHQIFRFFENPAELIS--SIKDDEHIVAYRFDR 588 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~~ 588 (605)
..+.+++...++.+|++.|...+|++ ++..-+. .-....|.--..+|+.+|+ .|.++..|++-+..|
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip-~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATP-PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCC-GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCC-HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 46788999999999999999999999 5444432 2222234333333677775 688888888766554
No 128
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.19 E-value=4.1 Score=33.26 Aligned_cols=67 Identities=15% Similarity=0.022 Sum_probs=46.1
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEE-CCceeEecccCccccc--CcCCCCeEEEEEecC
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY-NHQIFRFFENPAELIS--SIKDDEHIVAYRFDR 588 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~~ 588 (605)
.+.+++...++.+|+..|++.+|+++....+...-- ......-+.||+.+|. .|.+++.|++-...+
T Consensus 25 ~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p 94 (97)
T 1wjn_A 25 LEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGP 94 (97)
T ss_dssp EEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCC
Confidence 667889999999999999999999954443332211 1113333566777775 688889988765443
No 129
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=82.13 E-value=9.1 Score=29.51 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=47.9
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++...+|.. +.+.+....++.+|++.++...|++ ++..-+ ++.. +.+. |+.+++ .|.+++.|+
T Consensus 4 ~m~i~Vk~~~g~~----~~~~v~~~~tV~~lK~~i~~~~gip-~~~qrL--~~~G---~~L~-d~~tL~~~~i~~~~~l~ 72 (79)
T 3phx_B 4 PLSILVRNNKGRS----STYEVRLTQTVAHLKQQVSGLEGVQ-DDLFWL--TFEG---KPLE-DQLPLGEYGLKPLSTVF 72 (79)
T ss_dssp CEEEEEECTTSCE----EEEEECTTSBHHHHHHHHHHHHTCC-GGGEEE--EETT---EECC-TTSBGGGGTCCTTCEEE
T ss_pred CEEEEEEeCCCCE----EEEEECCcChHHHHHHHHHhhcCCC-HHHEEE--EECC---EECC-CCCcHHHCCCCCCCEEE
Confidence 3556666666653 6678889999999999999999998 555444 2333 3455 466675 577777776
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
+.
T Consensus 73 l~ 74 (79)
T 3phx_B 73 MN 74 (79)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 130
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=81.99 E-value=3.9 Score=35.28 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=51.8
Q ss_pred ecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCcccccc--CCCCCChhhhccCCCCeEEEEEe
Q 007395 169 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL--DVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 169 ~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l--~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+++......+...+|+.+|...|... +.+...+.|+--... ..| .|.++||.+++|.+...|+|+..
T Consensus 49 RlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPr----k~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 49 RYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPR----RKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp ECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSC----CEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCC----cCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 3455566778888999999999999876 667777887752221 234 46689999999999888888643
No 131
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.92 E-value=7.1 Score=32.16 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=49.2
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+++....+...-..+.+.+....++.+|++.|+..++++ +++.-+. +.. +.+.|++.+|. .|.+++.|++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip-~~~qrL~--~~g---k~L~D~~~tL~~ygI~~g~~l~l 81 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP-AEEAQIV--YME---QLLTDDHCSLGSYGLKDGDMVVL 81 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC-GGGBCEE--ETT---EEECCSSSBHHHHTCCTTEEEEE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC-hHHeEEE--ECC---EECCCCcccHHHCCCCCCCEEEE
Confidence 45555554332111246788999999999999999999998 5544442 343 45664445675 6788888766
Q ss_pred EEe
Q 007395 584 YRF 586 (605)
Q Consensus 584 ~e~ 586 (605)
..-
T Consensus 82 ~~~ 84 (102)
T 1v5o_A 82 LQK 84 (102)
T ss_dssp CBC
T ss_pred EEC
Confidence 543
No 132
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=81.33 E-value=7.1 Score=30.76 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=48.2
Q ss_pred ceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCe
Q 007395 503 TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEH 580 (605)
Q Consensus 503 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~ 580 (605)
...+.+++...+|.. +.+.+....++.+|++.|+...+++ ++..-+ +++. +.+. |+.++. .|.+++.
T Consensus 10 ~~~m~i~vk~~~g~~----~~~~v~~~~tV~~lK~~i~~~~gip-~~~qrL--~~~G---~~L~-d~~tL~~~~i~~~~~ 78 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIP-PQQQRL--IYSG---KQMN-DEKTAADYKILGGSV 78 (88)
T ss_dssp CCCEEEEEECTTSCE----EEEEECTTCBHHHHHHHHHHHHCCC-GGGCCE--EETT---EECC-TTSBGGGGTCCTTCE
T ss_pred CCcEEEEEEcCCCCE----EEEEECCCCCHHHHHHHHHHHHCcC-HHHEEE--EECC---eECC-CCCcHHHcCCCCCCE
Confidence 345667777676653 6788889999999999999999998 444333 1333 3455 466675 5677777
Q ss_pred EEE
Q 007395 581 IVA 583 (605)
Q Consensus 581 ~~~ 583 (605)
|++
T Consensus 79 i~l 81 (88)
T 3dbh_I 79 LHL 81 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 133
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=81.13 E-value=9.6 Score=29.96 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=48.8
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++...++. .+.+.+....++.+|++.|++..+++ +++..+. +.. +.+. |+.+++ .|.+++.|+
T Consensus 7 ~m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~qrL~--~~G---k~L~-d~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 7 GIQVFVKNPDGG----SYAYAINPNSFILGLKQQIEDQQGLP-KKQQQLE--FQG---QVLQ-DWLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SEEEEEEETTTE----EEEEEECSSSBHHHHHHHHHHHTCCC-TTTEEEE--ETT---EECC-SSSBHHHHTCCTTEEEE
T ss_pred CEEEEEEcCCCC----EEEEEeCCCChHHHHHHHHHHHhCCC-hHHEEEE--ECC---EEcc-CCCCHHHCCCCCCCEEE
Confidence 466666666654 25678889999999999999999998 5555542 443 3455 466775 577777776
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
+.
T Consensus 76 l~ 77 (87)
T 1wh3_A 76 LS 77 (87)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 134
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.48 E-value=15 Score=29.53 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=48.5
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHH---cCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTA---CCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
+++...+|. .+.+.+....++.+|++.|+.. .|++ +++.-+ ++.. +.+. |+.+|+ .|.+++.|+
T Consensus 3 I~Vk~~~g~----~~~~~v~~~~TV~~LK~~I~~~~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~ygI~~g~~i~ 71 (95)
T 1uel_A 3 VTLKTLQQQ----TFKIDIDPEETVKALKEKIESEKGKDAFP-VAGQKL--IYAG---KILN-DDTALKEYKIDEKNFVV 71 (95)
T ss_dssp EEEEETTCC----EEEEECCTTSBHHHHHHHHHHHHCTTTCC-TTTEEE--EETT---EECC-TTSBGGGGTCCSSSEEE
T ss_pred EEEEeCCCC----EEEEEECCCCHHHHHHHHHHhhcccCCCC-hhhEEE--EECC---EECC-CcCcHHHCCCCCCCEEE
Confidence 445555554 2677888999999999999998 7888 555544 2443 4566 466775 678888887
Q ss_pred EEEecC
Q 007395 583 AYRFDR 588 (605)
Q Consensus 583 ~~e~~~ 588 (605)
+.-..+
T Consensus 72 l~~~~~ 77 (95)
T 1uel_A 72 VMVTKP 77 (95)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 765443
No 135
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=80.44 E-value=10 Score=31.77 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=49.3
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+++...+|.. +.+.+....++.+|++.|++..+++ +++.-+. ++. +.+. |+.+|. .|.+++.|
T Consensus 34 ~~m~I~Vk~~~G~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi--~~G---k~L~-D~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 34 LAMQIFVKTLTGKT----ITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKESTL 102 (111)
T ss_dssp GCEEEEEECSSSCE----EEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEE--ETT---EECC-TTSBTTTTTCCTTCEE
T ss_pred ccEEEEEEeCCCCE----EEEEeCCCCCHHHHHHHHHHHhCCC-hHHEEEE--ECC---EECC-CCCcHHHCCCCCCCEE
Confidence 35666776666643 6788889999999999999999998 5555443 444 3455 456775 56777777
Q ss_pred EEE
Q 007395 582 VAY 584 (605)
Q Consensus 582 ~~~ 584 (605)
++.
T Consensus 103 ~l~ 105 (111)
T 3vdz_A 103 HLV 105 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 136
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=79.70 E-value=16 Score=29.64 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=42.6
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
.+++.++...++.+|++.|...+|+++ +..-+.-....++.+.+.+|+.+|+ .|.+++.|++
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~-~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCA-GTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCT-TTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCH-HHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 477888899999999999999999994 4433321112344334433677775 6778887765
No 137
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=79.47 E-value=8.1 Score=32.39 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=53.1
Q ss_pred EecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccC-CCCCChhhhccCCCCeEEEEEeecC
Q 007395 168 IDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDILLEVQVDN 245 (605)
Q Consensus 168 ~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~-~~~~tl~d~~l~~~~~llle~~~~g 245 (605)
+..+++......+....|+.+|...+... +..+..++|..-... ..+. +.++||.+++|.....|+||..++.
T Consensus 28 iRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPr----k~l~~d~~~TL~e~gL~p~a~L~Ve~~~~~ 101 (109)
T 2cr5_A 28 LRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPR----RALEVEGGSSLEDIGITVDTVLNVEEKEQS 101 (109)
T ss_dssp EECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSC----CBCCCCSSCBHHHHTCSSCEEEEEEECCCC
T ss_pred EECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCC----cCCCCCCCCCHHHcCCCCCeEEEEEeCCCC
Confidence 34556666788888999999999999854 445667777752221 2233 5789999999999999999765433
No 138
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.38 E-value=5 Score=33.26 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=50.2
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++..+.|.. +.+.+....++.++++.|+...|++ +++..++ +. .+.+. |+.+++ .|.+++.|.
T Consensus 28 mm~I~VKtl~Gk~----i~lev~p~dTV~~lK~~Ia~k~Gip-~~qQrLi--~~---Gk~L~-D~~TL~dygI~~gstlh 96 (100)
T 1uh6_A 28 MIEVVCNDRLGKK----VRVKCNTDDTIGDLKKLIAAQTGTR-WNKIVLK--KW---YTIFK-DHVSLGDYEIHDGMNLE 96 (100)
T ss_dssp EEEEEEECSSSSC----EEEEEETTSBHHHHHHHHHHHHCCC-GGGCEEE--ET---TEECC-SSCBHHHHTCCTTEEEE
T ss_pred eEEEEEECCCCCE----EEEEeCCCCcHHHHHHHHHHHhCCC-HHHEEEE--EC---CEECC-CCCCHHHcCCCCCCEEE
Confidence 3667777776643 6688889999999999999999998 6665553 33 35666 567776 677777765
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
.+
T Consensus 97 L~ 98 (100)
T 1uh6_A 97 LY 98 (100)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 139
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=79.35 E-value=2.7 Score=34.44 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=37.2
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEE
Q 007395 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208 (605)
Q Consensus 164 ~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~ 208 (605)
.+.|+........++.+...+|+..|++++.+.+||++.++||..
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~ 58 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY 58 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 344555555566778999999999999999999999999998876
No 140
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=79.17 E-value=12 Score=28.48 Aligned_cols=67 Identities=10% Similarity=0.187 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+++.. +|. .+.+.++...++.+|++.++...|++ +++.-+. +.. +.+. |+.+++ .|.+++.|++
T Consensus 5 m~i~vk~-~g~----~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~--~~g---k~L~-d~~tL~~~~i~~g~~i~l 72 (77)
T 2bwf_A 5 LNIHIKS-GQD----KWEVNVAPESTVLQFKEAINKANGIP-VANQRLI--YSG---KILK-DDQTVESYHIQDGHSVHL 72 (77)
T ss_dssp EEEEEEE-TTE----EEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEE--ETT---EECC-TTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEE-CCE----EEEEEECCCCcHHHHHHHHHHHhCCC-HHHEEEE--ECC---eEcC-CCCCHHHcCCCCCCEEEE
Confidence 4444444 443 36788889999999999999999998 6655553 444 3455 456775 5777887766
Q ss_pred E
Q 007395 584 Y 584 (605)
Q Consensus 584 ~ 584 (605)
.
T Consensus 73 ~ 73 (77)
T 2bwf_A 73 V 73 (77)
T ss_dssp E
T ss_pred E
Confidence 4
No 141
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=79.05 E-value=7.7 Score=29.94 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=47.6
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+++...+|.. +.+.+....++.++++++++..|++ ++..-+ +|.. +.+. |+.+++ .|.+++.|++
T Consensus 4 m~i~vk~~~g~~----~~~~v~~~~tv~~lk~~i~~~~gi~-~~~qrL--~~~G---~~L~-d~~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 4 IKLKVIGQDSSE----IHFKVKMTTHLKKLKESYCQRQGVP-MNSLRF--LFEG---QRIA-DNHTPKELGMEEEDVIEV 72 (79)
T ss_dssp EEEEEECTTCCE----EEEEEETTSCTHHHHHHHHHHHTCC-GGGEEE--EETT---EECC-TTCCHHHHTCCTTEEEEE
T ss_pred EEEEEECCCCCE----EEEEECCCChHHHHHHHHHHHHCCC-cccEEE--EECC---EEeC-CCCCHHHcCCCCCCEEEE
Confidence 455666666642 5677888999999999999999998 555544 3443 3455 456665 6778888766
Q ss_pred E
Q 007395 584 Y 584 (605)
Q Consensus 584 ~ 584 (605)
+
T Consensus 73 ~ 73 (79)
T 2uyz_B 73 Y 73 (79)
T ss_dssp E
T ss_pred E
Confidence 5
No 142
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=78.94 E-value=6.3 Score=29.90 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=45.4
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+++...+|. .+.+.++...++.+|++.+++..+++ +++..+. ++. +.+. |+.+++ .|.+++.|++.
T Consensus 3 i~vk~~~g~----~~~i~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~--~~g---~~L~-d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 3 IFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEETTSC----EEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEE--ETT---EECC-TTCBTGGGTCCTTCEEEEE
T ss_pred EEEEcCCCC----EEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEE--ECC---eECC-CCCcHHHcCCCCCCEEEEE
Confidence 444455554 25678888999999999999999998 5555442 343 3455 466675 56777777654
No 143
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=78.93 E-value=6.9 Score=31.97 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=54.3
Q ss_pred ceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 163 ~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
+.|+|. .+.....+.+-+...++.|.+..|+..|+++..+|+.. .+ ..+. .+.|..++++.+|+.|=+
T Consensus 22 IniKV~--~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf-----DG-~rI~-~~~TP~~L~meD~DiID~ 89 (95)
T 2l76_A 22 FPLKIR--CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF-----GE-TELS-PTATPRTLKLGVADIIDC 89 (95)
T ss_dssp EEEEEE--CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE-----TT-EECC-TTSCHHHHTCCSSCEEEE
T ss_pred EEEEEE--cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE-----CC-cCCC-CCCCHhHcCCCCCCEEEE
Confidence 455555 24467788899999999999999999999999999886 22 4454 367999999999997644
No 144
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=78.59 E-value=0.41 Score=44.65 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
..+++.++..+||.+|+.+|....++|++++||.. .+ ..|.| +.||. .+.+|-|-++
T Consensus 11 ktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf-----~G-K~LeD-~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 11 ETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN-----NG-FIAPN-TELVT-----DDVTYYLSLK 67 (189)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe-----cC-eECCC-CCccc-----CCCEEEEEEe
Confidence 45678899999999999999999999999999986 23 45665 56776 6666666555
No 145
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=78.51 E-value=7.6 Score=30.29 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=47.0
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+++...++.. +.+.+....++.+|++.|++..+++ +++..+. ++. +.+. |+.++. .|.+++.|++
T Consensus 4 m~i~vk~~~g~~----~~~~v~~~~tV~~lK~~i~~~~~ip-~~~qrL~--~~g---~~L~-d~~tL~~~~i~~~~~i~l 72 (85)
T 3n3k_B 4 MRIVVKTLMGRT----IILEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIHNHSALYL 72 (85)
T ss_dssp CEEEEECGGGCE----EEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEE--ETB---EECC-TTCBTTTTTCCTTCEEEE
T ss_pred EEEEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHHCCC-HHHEEEE--ECC---eECC-CCCCHHHCCCCCCCEEEE
Confidence 445555555542 6778889999999999999999998 6555442 333 3455 456775 4777887765
Q ss_pred E
Q 007395 584 Y 584 (605)
Q Consensus 584 ~ 584 (605)
.
T Consensus 73 ~ 73 (85)
T 3n3k_B 73 L 73 (85)
T ss_dssp E
T ss_pred E
Confidence 4
No 146
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.45 E-value=12 Score=30.89 Aligned_cols=70 Identities=11% Similarity=0.179 Sum_probs=49.0
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+++....+. +.+.+....++.+|++.|....+++ +++.-+ +|.. +.+. |+.+|. .|.+++.|
T Consensus 16 ~~m~I~Vk~~~g~-----~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-----EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVL--IFAG---KILK-DPDSLAQCGVRDGLTV 83 (106)
T ss_dssp SEEEEEEECSSCE-----EEEEEETTCCHHHHHHHHHHHHTCC-TTTEEE--EETT---EECC-TTSCHHHHTCCTTEEE
T ss_pred ceEEEEEEeCCCc-----EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEE--EECC---EECC-CcCcHHHcCCCCCCEE
Confidence 4456666555542 5778888999999999999999998 555555 3444 4455 466775 57777777
Q ss_pred EEEE
Q 007395 582 VAYR 585 (605)
Q Consensus 582 ~~~e 585 (605)
++.-
T Consensus 84 ~l~~ 87 (106)
T 1wx7_A 84 HLVI 87 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 147
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=78.40 E-value=10 Score=30.13 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=46.1
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
.+++...+|.. +.+.+....++.+|++.|+...+++ +++.-+ +++. +.+. |+.+++ .|.+++.|++.
T Consensus 2 ~I~Vk~~~g~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIP-PQQQRL--IYSG---KQMN-DEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCE----EEEECCTTCBHHHHHHHHHHHHCCC-GGGCEE--EETT---EECC-TTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCE----EEEEECCCCCHHHHHHHHHHHHCcC-hhHEEE--EECC---eECC-CCCcHHHcCCCCCCEEEEE
Confidence 34555566643 6778889999999999999999998 444333 2333 4455 466775 57778877654
No 148
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=78.15 E-value=14 Score=30.77 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=48.1
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++...+|. .+.+.+....++.+|++.|++..+++ +++..+ ++.. +.+. |+.+++ .|.+++.|+
T Consensus 35 ~m~I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 35 AMQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIP-PDQQRL--IFAG---KQLE-DGRTLSDYNIQKESTLH 103 (111)
T ss_dssp CEEEEEECSSSC----EEEEEECTTCBHHHHHHHHHHHHCCC-TTTEEE--EETT---EECC-SSCBTTTTTCCTTCEEE
T ss_pred eEEEEEEcCCCC----EEEEEeCCCCCHHHHHHHHHHHHCcC-cccEEE--EECC---EECC-CCCcHHHcCCCCCCEEE
Confidence 466666666654 25678888999999999999999998 555544 2343 3455 466775 567777776
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
+.
T Consensus 104 l~ 105 (111)
T 2ojr_A 104 LV 105 (111)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 149
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=77.94 E-value=6.3 Score=29.88 Aligned_cols=66 Identities=8% Similarity=0.066 Sum_probs=45.4
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+++...+|. .+.+.+....++.+|++.+++..+++ ++..-+. ++. +.+. |+.+++ .|.+++.|++.
T Consensus 3 i~vk~~~g~----~~~~~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~--~~g---~~L~-d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 3 IKVKTLTGK----EIEIDIEPTDKVERIKERVEEKEGIP-PQQQRLI--YSG---KQMN-DEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEECTTSC----EEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEE--ETT---EECC-TTSBGGGGTCCTTCEEEEE
T ss_pred EEEECCCCC----EEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEE--ECC---EECC-CCCcHHHcCCCCCCEEEEE
Confidence 344444554 25678888999999999999999998 6555542 443 3455 466775 57777777654
No 150
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=77.85 E-value=18 Score=29.63 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=51.0
Q ss_pred CCceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCC
Q 007395 501 TVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDD 578 (605)
Q Consensus 501 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~ 578 (605)
.....+.+++....+. +.+.+....++.+|++.|++..+++ +++.-+ ++.. +.+. |+.+|. .|.++
T Consensus 18 ~~~~~m~I~Vk~~~g~-----~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrL--i~~G---k~L~-D~~tL~~ygI~~g 85 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-----EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVL--IFAG---KILK-DPDSLAQCGVRDG 85 (100)
T ss_dssp CCTTEEEEEEECSSCE-----EEEEEETTCBHHHHHHHHHHHHTCC-GGGEEE--EETT---EECC-TTSBHHHHTCCTT
T ss_pred CCCCeEEEEEEcCCCc-----EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEE--EECC---EECC-CcCcHHHCCCCCC
Confidence 3345567777666652 5678888999999999999999998 555555 2443 4455 566775 67788
Q ss_pred CeEEEE
Q 007395 579 EHIVAY 584 (605)
Q Consensus 579 d~~~~~ 584 (605)
+.|++.
T Consensus 86 stI~l~ 91 (100)
T 1yqb_A 86 LTVHLV 91 (100)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 887665
No 151
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=77.46 E-value=19 Score=28.02 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=48.8
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHH---cCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCC
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTA---CCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDE 579 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d 579 (605)
.+.+++...+|.. +.+.+....++.+|++.|+.. .|++ +++.-+ ++.. +.+. |+.+++ .|.+++
T Consensus 5 ~m~i~vk~~~g~~----~~~~v~~~~TV~~lK~~i~~~~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~~~i~~g~ 73 (85)
T 2wyq_A 5 AVTITLKTLQQQT----FKIRMEPDETVKVLKEKIEAEKGRDAFP-VAGQKL--IYAG---KILS-DDVPIRDYRIDEKN 73 (85)
T ss_dssp CEEEEEEETTSCE----EEEEECTTSBHHHHHHHHHHHHCTTTCC-GGGEEE--EETT---EECC-TTSBGGGGCCCTTS
T ss_pred eEEEEEEECCCCE----EEEEECCCCCHHHHHHHHHhhccccCCC-HHHeEE--EECC---EECc-CCCCHHHcCCCCCC
Confidence 4566666666642 567888999999999999997 7887 555544 2443 3455 466775 577788
Q ss_pred eEEEEE
Q 007395 580 HIVAYR 585 (605)
Q Consensus 580 ~~~~~e 585 (605)
.|++..
T Consensus 74 ~i~l~~ 79 (85)
T 2wyq_A 74 FVVVMV 79 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877654
No 152
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=77.28 E-value=21 Score=27.15 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=47.3
Q ss_pred eEEEEEecCCCCCceeEEEE-ecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 506 MTVTVFYANGSGLPMPFTVT-LMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
+.+++...+|... +.+. +....++.+|++.++...|++ +++.-+. +.. +.+. |+.+++ .|.+++.|+
T Consensus 3 m~i~Vk~~~g~~~---~~l~~v~~~~tv~~lK~~i~~~~gip-~~~qrL~--~~g---~~L~-d~~tL~~~~i~~g~~i~ 72 (78)
T 2faz_A 3 MWIQVRTMDGRQT---HTVDSLSRLTKVEELRRKIQELFHVE-PGLQRLF--YRG---KQME-DGHTLFDYEVRLNDTIQ 72 (78)
T ss_dssp EEEEEEETTSSCE---EEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEE--ETT---EECC-TTCBTTTTTCCTTCEEE
T ss_pred EEEEEEECCCCEE---EEEeccCCCCCHHHHHHHHHHHHCcC-hhhEEEE--ECC---EECC-CCCCHHHcCCCCCCEEE
Confidence 4566666666531 3577 888999999999999999998 5555442 333 3455 566775 567777776
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
+.
T Consensus 73 l~ 74 (78)
T 2faz_A 73 LL 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 153
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=76.91 E-value=2 Score=34.21 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeE-EEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKAR-IWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~R-Lw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
....+.+.++..-|++.|++.+.+.++++..+.. .|. .-.|+. ..|. .+..|.|+++..|+.|.+
T Consensus 15 ~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~i-rv~NK~-~~L~-~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 15 NGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWI-RVVNKD-KVFS-GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEE-EEGGGT-EEEE-TTSBTGGGTCCTTCEEEE
T ss_pred CCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEE-EEecCC-EEEc-CCCEEeeCCcCCCCEEEE
Confidence 3367899999999999999999999999833222 332 222344 4454 467999999999998765
No 154
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.64 E-value=23 Score=27.84 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=50.1
Q ss_pred eeeEEEEEecCCCCCceeEEE-EecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCe
Q 007395 504 RTMTVTVFYANGSGLPMPFTV-TLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEH 580 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~ 580 (605)
..+.+++...+|. ..+.+ .+....++.+|++.|+...+++ +++.-+. +.. +.+. |+.++. .|.+++.
T Consensus 6 ~~m~i~Vk~~~g~---~~~~l~~v~~~~tV~~lK~~i~~~~gip-~~~qrL~--~~g---k~L~-d~~tL~~~~i~~g~~ 75 (89)
T 1wy8_A 6 SGMWIQVRTIDGS---KTCTIEDVSRKATIEELRERVWALFDVR-PECQRLF--YRG---KQLE-NGYTLFDYDVGLNDI 75 (89)
T ss_dssp SCEEEEEEETTCS---CEEEEEEECTTCBHHHHHHHHHHHSCCC-TTTEEEE--ETT---EECC-SSSBHHHHTCCTTCE
T ss_pred CcEEEEEEECCCC---ceEEEEecCCCCCHHHHHHHHHHHHCcC-hhhEEEE--ECC---eECC-CCCCHHHCCCCCCCE
Confidence 4567777777762 12678 4889999999999999999998 5555442 333 4455 566775 6778888
Q ss_pred EEEE
Q 007395 581 IVAY 584 (605)
Q Consensus 581 ~~~~ 584 (605)
|++.
T Consensus 76 i~l~ 79 (89)
T 1wy8_A 76 IQLL 79 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 155
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=76.58 E-value=12 Score=30.55 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=44.0
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEE-CCceeEecccCccccc--CcCCCCeEEEEEe
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY-NHQIFRFFENPAELIS--SIKDDEHIVAYRF 586 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~ 586 (605)
.++++++...++.+|++.|...+|++ ++..-+.-.- +.+....+.+|+.+|+ .|.+++.|++-..
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip-~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTS-VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCC-TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcC-HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 47889999999999999999999999 5444442211 1122222333567775 6788888876543
No 156
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=76.48 E-value=8.1 Score=30.77 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=48.9
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+.+...+|.. +.+.++...++.+|++.|++..+++ +++.-+. +.. +.+. |+.+++ .|.+++.|+
T Consensus 9 ~~~i~v~~~~G~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL~--~~G---k~L~-D~~tL~~~gi~~g~~i~ 77 (88)
T 1sif_A 9 GLQLFIKTLTGKT----FTVEMEPSDTIENLKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKESTLH 77 (88)
T ss_dssp -CEEEEEETTSCE----EEEECCTTSBHHHHHHHHHHHHCCC-GGGCEEE--ETT---EECC-TTSBSGGGTCCTTCEEE
T ss_pred ceEEEEEeCCCCE----EEEEECCCChHHHHHHHHHHHHCcC-hhhEEEE--ECC---EECC-CCCcHHHcCCCCCCEEE
Confidence 4567777777753 6788889999999999999999998 5544442 343 3455 466775 577787776
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
+.
T Consensus 78 l~ 79 (88)
T 1sif_A 78 LV 79 (88)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 157
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.29 E-value=4 Score=34.18 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=48.7
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCC--------------CcEEEEEEECCceeEecccCc
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKID--------------EGLLLAEVYNHQIFRFFENPA 569 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------------~~~~~~e~~~~~~~~~~~~~~ 569 (605)
..+.+++..++|.. +.+.+...+++.+|+++|....++++. ..+-++ |..+ .+.||+
T Consensus 6 ~~M~I~Vk~l~g~~----~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk---~L~dD~ 76 (105)
T 1v2y_A 6 SGMTVRVCKMDGEV----MPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT--SAGE---KLTEDR 76 (105)
T ss_dssp CSEEEEEECSSSCE----EEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSC---EECCSS
T ss_pred CcEEEEEEecCCCE----EEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE--eCCc---CccCCc
Confidence 34777787788764 678899999999999999999887621 122222 4443 444466
Q ss_pred cccc--CcCCCCeEE
Q 007395 570 ELIS--SIKDDEHIV 582 (605)
Q Consensus 570 ~~~~--~i~~~d~~~ 582 (605)
.+|+ .|.+++.|+
T Consensus 77 ~tL~dygI~~g~~l~ 91 (105)
T 1v2y_A 77 KKLRDYGIRNRDEVS 91 (105)
T ss_dssp SBHHHHTCCSSEEEE
T ss_pred CCHHHcCCCCCCEEE
Confidence 7886 688887764
No 158
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=75.91 E-value=15 Score=28.91 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=46.1
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+++...+|.. +.+.+....++.+|++.|+...|++ +++.-+ ++.. +.+. |+.+++ .| +++.|
T Consensus 16 ~~m~i~Vk~~~g~~----~~~~v~~~~tV~~lK~~i~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~~~i-~g~~i 83 (88)
T 4eew_A 16 DSLEVLVKTLDSQT----RTFIVGAQMNVKEFKEHIAASVSIP-SEKQRL--IYQG---RVLQ-DDKKLQEYNV-GGKVI 83 (88)
T ss_dssp CEEEEEEEETTSCE----EEEEEETTCBHHHHHHHHHHHHTCC-GGGEEE--EETT---EECC-TTSBGGGGTC-TTEEE
T ss_pred CeEEEEEEcCCCCE----EEEEECCCCCHHHHHHHHHHHhCCC-HHHEEE--EECC---EECC-CCCcHHHcCC-CCcEE
Confidence 35667777777753 5678889999999999999999998 555444 2333 4455 466665 45 45555
Q ss_pred EE
Q 007395 582 VA 583 (605)
Q Consensus 582 ~~ 583 (605)
+.
T Consensus 84 ~l 85 (88)
T 4eew_A 84 HL 85 (88)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 159
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=75.68 E-value=15 Score=29.67 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=46.9
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYR 585 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e 585 (605)
+++...+|. .+.+.+....++.+|++.|++..|++ ++...+. ++. +.+. |+.+++ .|.+++.|++.-
T Consensus 3 I~Vk~~~g~----~~~~~v~~~~TV~~LK~~I~~~~gi~-~~~qrL~--~~G---k~L~-D~~tL~~~gi~~g~~i~l~~ 71 (98)
T 1yx5_B 3 IFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKESTLHLVL 71 (98)
T ss_dssp EEEEETTSC----EEEEECCTTCBHHHHHHHHHHHTCCC-GGGEEEE--ETT---EECC-TTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEE--ECC---EECC-CCCCHHHcCCCCCCEEEEEE
Confidence 445555554 25678888999999999999999998 5555542 443 3455 466775 577888876553
No 160
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=75.01 E-value=22 Score=28.69 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=48.0
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++....+ .+.+.+....++.+|++.|+...|++ +++.-+. +.. +.+.|++.+|+ .|.+++.|+
T Consensus 15 ~~~I~Vk~~~~-----~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi--~~G---k~L~D~~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 15 KIHVTVKFPSK-----QFTVEVDRTETVSSLKDKIHIVENTP-IKRMQLY--YSG---IELADDYRNLNEYGITEFSEIV 83 (94)
T ss_dssp CEEEEEECSSC-----EEEEEECTTCBHHHHHHHHHHHSSSC-TTTEEEE--ETT---EEECCTTSBHHHHTCCTTEEEE
T ss_pred CEEEEEEcCCc-----EEEEEECCCCcHHHHHHHHHHHHCcC-HHHEEEE--ECC---EECCCCcccHHHCCCCCCCEEE
Confidence 34444444433 36788889999999999999999998 6665552 444 45563326775 677887776
Q ss_pred EEE
Q 007395 583 AYR 585 (605)
Q Consensus 583 ~~e 585 (605)
+.-
T Consensus 84 lv~ 86 (94)
T 2kan_A 84 VFL 86 (94)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 161
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=74.26 E-value=8.5 Score=30.61 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=49.8
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++...+|.. +.+.+....++.+|++.|+...|++ +++.-+. +.. +.+. |+.+++ .|.+++.|+
T Consensus 4 ~m~I~Vk~~~g~~----~~~~v~~~~TV~~LK~~I~~~~gip-~~~qrL~--~~G---k~L~-D~~tL~~~~I~~g~~i~ 72 (88)
T 2hj8_A 4 PLSILVRNNKGRS----STYEVRLTQTVAHLKQQVSGLEGVQ-DDLFWLT--FEG---KPLE-DQLPLGEYGLKPLSTVF 72 (88)
T ss_dssp EEEEEEEETTSCE----EEEEEESSSBHHHHHHHHHHHTCSC-TTTEEEE--SSS---SCCC-TTSBHHHHHCSTTCEEE
T ss_pred cEEEEEECCCCCE----EEEEECCCCcHHHHHHHHHHHhCCC-hhHEEEE--ECC---EECC-CCCcHHHcCCCCCCEEE
Confidence 3566666666642 5677888999999999999999998 5554442 333 3345 566775 578888887
Q ss_pred EEEec
Q 007395 583 AYRFD 587 (605)
Q Consensus 583 ~~e~~ 587 (605)
+.--.
T Consensus 73 l~~~~ 77 (88)
T 2hj8_A 73 MNLRL 77 (88)
T ss_dssp EEEC-
T ss_pred EEEEc
Confidence 66443
No 162
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.07 E-value=22 Score=29.27 Aligned_cols=66 Identities=8% Similarity=0.145 Sum_probs=48.1
Q ss_pred ceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEEecCCCC
Q 007395 519 PMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYRFDRKQG 591 (605)
Q Consensus 519 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~~~~~ 591 (605)
-.++.+.+....++.+|++.|+...|++ ++..-++ |.. |.+. |+.+|+ .|.++..|.+-.+...+.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip-~~qQrLI--~~G---KiL~-D~~TL~~y~I~~gsti~vl~lrg~~~ 96 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQ-ENYIKIV--INK---KQLQ-LGKTLEEQGVAHNVKAMVLELKQSSG 96 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCC-STTCEEE--ETT---EECC-TTSBHHHHTCCSSEEEEEECCCCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcC-HHHeEEE--eCC---eECC-CCCcHHHcCCCCCCEEEEEEECCCCc
Confidence 3457888889999999999999999998 5555543 554 4556 567775 678888886665554443
No 163
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.05 E-value=22 Score=28.68 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=43.4
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEEec
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYRFD 587 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~ 587 (605)
.+++.++...++.+|++.|...+|+++....++..-...+....+.+|+.+|. .|.+++.|++-.+.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECC
Confidence 47889999999999999999999999433333221111222222323566775 57788887766544
No 164
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=72.57 E-value=37 Score=28.79 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=47.1
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEE-CCceeEecccCccccc--CcCCCCeEEEEEecCC
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY-NHQIFRFFENPAELIS--SIKDDEHIVAYRFDRK 589 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~~~ 589 (605)
.+.+.++...++.+|++.|...+|++ +++.-+.-.- ..++...+.+|+.+|. .|.++..|++-.+.+.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip-~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~ 89 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTT-VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGG 89 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCC-TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTC
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCC-HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCC
Confidence 47788999999999999999999999 5555553322 2233222323566775 5778888887776654
No 165
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=72.15 E-value=13 Score=30.14 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=49.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
+....++.+.+..++.++++.+|+.||+++++..|-.-. ..+ |.+..+.=.+|-.|.+|-|.
T Consensus 18 n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~------k~l-DLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 18 NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQR------TVL-DLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp TSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETT------EEE-SSSCBHHHHCCCSSCEEEEE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCC------Eec-cccceeEecCCCCCCEEEEE
Confidence 334678899999999999999999999998887766411 223 55677888899999988873
No 166
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=71.72 E-value=28 Score=28.39 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=47.8
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++... |. .+.+.+....++.+|++.|+...|++ ++..-+ ++.. +.+. |+.+|. .|.+++.|+
T Consensus 25 ~m~I~Vk~~-g~----~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~~gI~~g~~I~ 92 (101)
T 2klc_A 25 IMKVTVKTP-KE----KEEFAVPENSSVQQFKEEISKRFKSH-TDQLVL--IFAG---KILK-DQDTLSQHGIHDGLTVH 92 (101)
T ss_dssp CEEEEEECS-SC----EEEEEECSCCCHHHHHHHHHHHHTCC-GGGEEE--EETT---EEEC-TTCCTGGGTCCTTCEEE
T ss_pred eEEEEEEeC-Cc----EEEEEECCCCCHHHHHHHHHHHHCcC-hhhEEE--EECC---EECC-CcCcHHHcCCCCCCEEE
Confidence 455555555 42 26788889999999999999999998 655555 3444 3455 566775 567777776
Q ss_pred EEE
Q 007395 583 AYR 585 (605)
Q Consensus 583 ~~e 585 (605)
+.-
T Consensus 93 l~~ 95 (101)
T 2klc_A 93 LVI 95 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 167
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=71.57 E-value=22 Score=28.05 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=47.7
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++..++|.. +.+.+....++.+|++.|....+++ ++..-+ +++. +.+. |+.+|. .| +++.|+
T Consensus 5 ~m~i~Vk~~~g~~----~~~~v~~~~tV~~lK~~i~~~~gip-~~~qrL--i~~G---k~L~-d~~tL~~~~i-~g~~i~ 72 (90)
T 4dwf_A 5 SLEVLVKTLDSQT----RTFIVGAQMNVKEFKEHIAASVSIP-SEKQRL--IYQG---RVLQ-DDKKLQEYNV-GGKVIH 72 (90)
T ss_dssp EEEEEEEETTCCE----EEEEEETTCBHHHHHHHHHHHHTCC-GGGEEE--EETT---EECC-TTSBGGGGTC-TTEEEE
T ss_pred EEEEEEEcCCCCE----EEEEECCCCCHHHHHHHHHHHhCCC-HHHEEE--EECC---eECC-CCCCHHHcCC-CCcEEE
Confidence 4667777777753 5678888999999999999999998 555444 2343 3455 466675 46 566665
Q ss_pred EEE
Q 007395 583 AYR 585 (605)
Q Consensus 583 ~~e 585 (605)
+.-
T Consensus 73 l~~ 75 (90)
T 4dwf_A 73 LVE 75 (90)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 168
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=68.60 E-value=1 Score=42.45 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 171 ~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
.+.....+.+.+..++..|++..|+..|++++.+|+..- + ..+.+ +.|.+++++++|+.|=+
T Consensus 28 qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFD-----G-qRI~d-ddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 28 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD-----G-IRIQA-DQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEEC-----C-EecCC-CCCHHHcCCCCCCEEEE
Confidence 344677889999999999999999999999999998762 2 44544 67999999999998655
No 169
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=67.45 E-value=13 Score=30.22 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=48.5
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++...+|.. +.+.+....++.+|+++++...|++ ++..-+ +|.. +.+. |+.+++ .|.+++.|+
T Consensus 21 ~m~I~Vk~~~g~~----~~l~v~~~~tv~~lK~~i~~~~gip-~~~qrL--if~G---k~L~-d~~tl~dy~i~~g~~I~ 89 (97)
T 1wyw_B 21 YIKLKVIGQDSSE----IHFKVKMTTHLKKLKESYCQRQGVP-MNSLRF--LFEG---QRIA-DNHTPKELGMEEEDVIE 89 (97)
T ss_dssp EEEEEEECTTCCE----EEEEEETTSCTHHHHHHHHHHHTCC-GGGEEE--EETT---EECC-TTCCHHHHTCCTTCEEE
T ss_pred cEEEEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHHCCC-hhhEEE--EECC---eEcC-CCCCHHHCCCCCCCEEE
Confidence 4566666666653 5677888999999999999999998 554443 3333 3455 456665 688888887
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
++
T Consensus 90 l~ 91 (97)
T 1wyw_B 90 VY 91 (97)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 170
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=67.12 E-value=18 Score=28.50 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=48.9
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEe-cccCccccc--CcCCCCeE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRF-FENPAELIS--SIKDDEHI 581 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~--~i~~~d~~ 581 (605)
.+.+++..+.|.. +.+.+....++.+|++.|+...|++ +++.-+. +.. +. +. |+.+++ .|.+++.|
T Consensus 10 ~~~i~vk~l~g~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi--~~G---k~lL~-D~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 10 HMKFLVENLNGSS----FELEVDYRDTLLVVKQKIERSQHIP-VSKQTLI--VDG---IVILR-EDLTVEQCQIVPTSDI 78 (84)
T ss_dssp CEEEEEEETTSCE----EEEEECTTSBHHHHHHHHHHHHTCC-GGGEEEE--ETT---EECCC-SSSBHHHHTCCTTSCE
T ss_pred ceEEEEEecCCcE----EEEEECCCChHHHHHHHHHHHHCcC-hHHEEEE--ECC---EEecC-CcCCHHHcCCCCCCEE
Confidence 4667777777753 6788999999999999999999998 5554442 343 34 55 566775 57777776
Q ss_pred EE
Q 007395 582 VA 583 (605)
Q Consensus 582 ~~ 583 (605)
++
T Consensus 79 ~l 80 (84)
T 2kk8_A 79 QL 80 (84)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 171
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=66.66 E-value=9 Score=31.52 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=38.1
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+.+....++.+|++.|++..|++.....++ +.. +.+. |+.+|+ .|.+++.|++
T Consensus 40 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~G---k~L~-D~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 40 WEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSG---KILK-DDQTVESYHIQDGHSVHL 96 (101)
T ss_dssp CCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE---ETT---EECC-TTSBTTTTTCCTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE---ECC---EECC-CcCcHHHCCCCCCCEEEE
Confidence 45677889999999999999999984333332 333 4556 466775 4667776654
No 172
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.29 E-value=39 Score=28.83 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=48.5
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++... +. .+.+.+....++.+|++.|....+++ +++.-+ +|.. +.+. |+.+|. .|.+++.|+
T Consensus 32 ~m~I~Vk~~-g~----~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrL--i~~G---k~L~-D~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 32 IIKVTVKTP-KE----KEEFAVPENSSVQQFKEAISKRFKSQ-TDQLVL--IFAG---KILK-DQDTLIQHGIHDGLTVH 99 (125)
T ss_dssp CEEEEEECS-SC----EEEEEECTTCCHHHHHHHHHHHHCSC-SSSEEE--EETT---EEES-TTSCGGGTTCSSSEEEE
T ss_pred cEEEEEEeC-Ce----EEEEEECCCCcHHHHHHHHHHHHCcC-cceEEE--EECC---EEcC-CCCCHHHcCCCCCCEEE
Confidence 455555555 43 26778888999999999999999998 555544 2444 3455 566775 577777777
Q ss_pred EEEec
Q 007395 583 AYRFD 587 (605)
Q Consensus 583 ~~e~~ 587 (605)
+..-.
T Consensus 100 lv~~~ 104 (125)
T 1j8c_A 100 LVIKR 104 (125)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 65443
No 173
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.18 E-value=21 Score=28.14 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=39.9
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+.+....++.+|++.|+...|++ +++.-+. +.. +.+. |+.+|+ .|.+++.|++
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL~--~~G---k~L~-D~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPITNVL-PRGQKLI--FKG---KVLV-ETSTLKQSDVGSGAKLML 80 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCCC-TTTCEEE--ETT---EECC-TTCBTTTTTCCTTEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcC-hHHEEEE--ECC---eECC-CcCCHHHCCCCCCCEEEE
Confidence 6788889999999999999999998 5544442 444 3455 567776 4667766654
No 174
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.13 E-value=11 Score=30.01 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=44.5
Q ss_pred CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCC
Q 007395 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM 233 (605)
Q Consensus 174 ~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~ 233 (605)
....+.+|+..++.+|+-.+|..-.++++.+-|..-. +.. +.| |.+++|.|++|..
T Consensus 21 QKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~--~~~-e~L-dLskSLndlgirE 76 (91)
T 2daj_A 21 QKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDY--QSQ-EPL-DLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCS--SCC-CBC-CTTSCHHHHTCSE
T ss_pred ceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCC--CCC-ccc-chhcchhhhhhhh
Confidence 3567899999999999999999999999998776522 222 444 4588999999875
No 175
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.75 E-value=19 Score=29.72 Aligned_cols=74 Identities=8% Similarity=0.023 Sum_probs=51.7
Q ss_pred ceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCe
Q 007395 503 TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEH 580 (605)
Q Consensus 503 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~ 580 (605)
...+.+++...+|.. +.+.+....++.+|++.|....|++ +++.-+. +.. +.+. |+.+|. .|.+++.
T Consensus 21 ~~~m~I~Vk~~~g~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi--~~G---k~L~-D~~tL~~ygI~~g~t 89 (106)
T 1ttn_A 21 GYECQLRLRLSTGKD----LKLVVRSTDTVFHMKRRLHAAEGVE-PGSQRWF--FSG---RPLT-DKMKFEELKIPKDYV 89 (106)
T ss_dssp CCSEEEEEEETTTEE----EEEEECTTSHHHHHHHHHHHTTCCC-STTCEEE--ETT---EECC-TTSHHHHCCCSSSCE
T ss_pred CCeEEEEEEcCCCCE----EEEEeCCCCcHHHHHHHHHHHHCcC-cccEEEE--ECC---EECC-CCCcHHHcCCCCCCE
Confidence 345677777777642 6688889999999999999999998 4443332 333 4455 566675 6788888
Q ss_pred EEEEEec
Q 007395 581 IVAYRFD 587 (605)
Q Consensus 581 ~~~~e~~ 587 (605)
|++.--.
T Consensus 90 i~lv~~~ 96 (106)
T 1ttn_A 90 VQVIVSQ 96 (106)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 8776443
No 176
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=63.57 E-value=32 Score=28.77 Aligned_cols=69 Identities=9% Similarity=0.131 Sum_probs=49.2
Q ss_pred eEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
..+++..++|.. +.+.+....++.+|++.|+...|++ +++.-+ ++.. +.+. |+.+|+ .|.+++.|++
T Consensus 10 ~~i~vk~l~G~~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrL--i~~G---k~L~-D~~tL~~ygI~~gstI~l 78 (114)
T 2kdi_A 10 FQIFAKTLTGKT----ITLEVESSDTIDNVKSKIQDKEGIP-PDQQRL--IWAG---KQLE-DGRTLSDYNIQRESTLHL 78 (114)
T ss_dssp CEEEEEETTCCE----EEEECCTTCBHHHHHHHHHHHHCCC-GGGEEE--EETT---EECC-TTCBTTTTTCCSSCEEEE
T ss_pred EEEEEEeCCCcE----EEEEECCCCcHHHHHHHHHHHHCcC-hHHEEE--EECC---EECC-CCCcHHHCCCCCCCEEEE
Confidence 345566677643 6678888999999999999999998 555554 2443 3455 567775 5778888876
Q ss_pred EE
Q 007395 584 YR 585 (605)
Q Consensus 584 ~e 585 (605)
.-
T Consensus 79 ~~ 80 (114)
T 2kdi_A 79 VL 80 (114)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 177
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.38 E-value=25 Score=27.90 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=40.1
Q ss_pred EEEEecCC-----CcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEE
Q 007395 522 FTVTLMKH-----GCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYR 585 (605)
Q Consensus 522 ~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e 585 (605)
+.+.+... .++.+|++.|+..+|++ +++.-+. +.. +.+.|++.+|+ .|.+++.|++--
T Consensus 19 ~~i~v~~~~~~~~~TV~~LK~~i~~~~gip-~~~qrL~--~~G---k~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 19 HDLHVTSQQGSSEPVVQDLAQVVEEVIGVP-QSFQKLI--FKG---KSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEECCCSSSSSCBHHHHHHHHHHHTCCC-TTTCEEE--ETT---EEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEECCCcCcccCcHHHHHHHHHHHHCcC-HHHEEEE--ECC---eecCCCcccHHHCCCCCCCEEEEEe
Confidence 56777774 89999999999999999 5444442 443 44564455675 567777776543
No 178
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=62.71 E-value=4.4 Score=32.82 Aligned_cols=70 Identities=7% Similarity=0.152 Sum_probs=45.5
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCcccccCcCCCCeEEEEEecCCCCC-ceEEEEee
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG-KIKLEIVN 600 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~~d~~~~~e~~~~~~~-~~~~~~~~ 600 (605)
..+.++...++.+|.+.+...|++...+.+.+ +|.+++.++++-..+.|.-.|+++-....+ .+.++||.
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~l---------ky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihvf~ 88 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTM---------KWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFP 88 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEE---------EECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE---------EEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEEcc
Confidence 57788889999999999999999984555655 565544555543334333345544444444 56666664
No 179
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=62.60 E-value=12 Score=30.91 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=46.2
Q ss_pred EEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEE
Q 007395 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYR 585 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e 585 (605)
+++..++|. .+.+.+....++.+|++.|....|++ +++.-+ ++.. +.+. |+.+|+ .|.+++.|++.-
T Consensus 4 I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrL--i~~G---k~L~-D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 4 LTFKNFKKE----KVPLDLEPSNTILETKTKLAQSISCE-ESQIKL--IYSG---KVLQ-DSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp EEEECTTCC----EEEECCCTTSBHHHHHHHHHHTTTSC-GGGCEE--EETT---EECC-TTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCCC-hhhEEE--EECC---EECC-CcCCHHHcCCCCCCEEEEEE
Confidence 444445554 26778888999999999999999998 444333 2343 3456 466775 578888887654
No 180
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=62.36 E-value=17 Score=30.20 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=52.7
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCcccc-cCcCCCCeEEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI-SSIKDDEHIVAYR 585 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~e 585 (605)
++++++-.++..++..+++...+.. .+.++++++..++=...|..++..+ +.+.-+..||++.
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~-~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 22 VSVKAKVSSIAQEILKVVAEKIQYA-EEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp EEECCCTTCBSHHHHHHHHHHHTSC-GGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred EEEEEeccchHHHHHHHHHHHhcCC-ccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 5677888889999999999998876 5689999999999888888666666 5788899999874
No 181
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=62.12 E-value=19 Score=28.68 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=43.7
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhh
Q 007395 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA 229 (605)
Q Consensus 164 ~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~ 229 (605)
.+++... ....+.+.+..++.+|.+++++.++++.+.+.|........... + ..+..++++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i-~~d~dl~~a 67 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-P-LSEDSMKDA 67 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-E-CCTTTHHHH
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee-c-cChHHHHHH
Confidence 4444443 35778899999999999999999999989999987664322213 2 234567776
No 182
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.16 E-value=24 Score=28.13 Aligned_cols=72 Identities=6% Similarity=-0.000 Sum_probs=46.7
Q ss_pred eeEEEEEecCCCCCceeEEE-EecCCCcHhHHHHHHHHH-cCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCe
Q 007395 505 TMTVTVFYANGSGLPMPFTV-TLMKHGCCKDLILALSTA-CCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEH 580 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~ 580 (605)
.+.+++..+.|.... +.+ .+....++.++++.|++. .+++ +++.-++-.+.. +.+. |+.+++ .|.++..
T Consensus 10 ~M~I~Vk~~~g~~~~--~~l~~v~~~~TV~~lK~~I~~~~~~i~-~~~QrL~~~~~G---k~L~-D~~tL~~y~i~~~st 82 (88)
T 2dzj_A 10 HYEVEILDAKTREKL--CFLDKVEPHATIAEIKNLFTKTHPQWY-PARQSLRLDPKG---KSLK-DEDVLQKLPVGTTAT 82 (88)
T ss_dssp CEEEEEEESSSCCCC--EEEEEECSSCBHHHHHHHHHHHCSSSC-TTTCCEESSTTS---CCCC-TTCBTTTSSCCSEEE
T ss_pred EEEEEEECCCCCEEe--eEEeEcCCCCcHHHHHHHHHHHhcCCC-hHHeEEEecCCC---cCcC-CCCCHHHcCCCCCCE
Confidence 467777777776432 667 889999999999999995 7887 444333211222 3555 566776 4556655
Q ss_pred EEE
Q 007395 581 IVA 583 (605)
Q Consensus 581 ~~~ 583 (605)
||+
T Consensus 83 l~~ 85 (88)
T 2dzj_A 83 LYF 85 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 183
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=57.84 E-value=26 Score=30.12 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=46.3
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHh-CCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 171 RDNSQTVIRLSKKASTRQLYEKVCKLR-GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 171 ~~~~~~~i~vS~~~tv~~l~~~l~~~~-~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
.++......+...+|+.+|.+.+.... +.....+.|+--... ..+.+.++||.|++|... .+++
T Consensus 60 pdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPr----k~l~d~~~TL~eagL~ps-avl~ 124 (127)
T 1s3s_G 60 ADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPN----KELADENQTLKEANLLNA-VIVQ 124 (127)
T ss_dssp TTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTT----EECCSTTCBHHHHTCSSC-EEEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCC----CCCCCCCCcHHHCCCcCc-eEEE
Confidence 455567888999999999999998874 344667777752221 345567899999999985 4444
No 184
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=57.20 E-value=52 Score=26.80 Aligned_cols=72 Identities=8% Similarity=0.076 Sum_probs=47.8
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHH-HHHcCCCCCCcEEEEEEECCceeEecccCccccc--Cc-CCCC
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL-STACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SI-KDDE 579 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i-~~~d 579 (605)
..+.+++..+.|. ...+.+.+....++.++++.| +...|++ +++.-+. +.. +.+. |+.+|+ .| .+++
T Consensus 18 ~~m~I~VKtl~g~--~~~i~v~v~~~~TV~~lK~~I~~~~~gip-~~~QrLi--~~G---k~L~-D~~tL~dy~I~~~g~ 88 (98)
T 4a20_A 18 AAVHLTLKKIQAP--KFSIEHDFSPSDTILQIKQHLISEEKASH-ISEIKLL--LKG---KVLH-DNLFLSDLKVTPANS 88 (98)
T ss_dssp CCEEEEEEECSSS--CEEEEEEECTTCBHHHHHHHHHHTTSCSC-GGGEEEE--ETT---EEEC-TTCBGGGSCCBTTBC
T ss_pred CCEEEEEEcCCCC--EEEEEEecCCCChHHHHHHHHHHHhcCCC-hhhEEEE--ECC---EECc-CcCCHHHcCcCCCCC
Confidence 3466777777775 223555677999999999999 8888887 5544432 343 4556 566776 45 6677
Q ss_pred eEEEE
Q 007395 580 HIVAY 584 (605)
Q Consensus 580 ~~~~~ 584 (605)
.|++.
T Consensus 89 ti~lm 93 (98)
T 4a20_A 89 TITVM 93 (98)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
No 185
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=56.66 E-value=8.3 Score=41.87 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=45.4
Q ss_pred eEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCcccc--ccCC----CCCChhhhccCC-CCeEEEEEe
Q 007395 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTS--PLDV----SDQTLDDAMLQM-DQDILLEVQ 242 (605)
Q Consensus 176 ~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~--~l~~----~~~tl~d~~l~~-~~~llle~~ 242 (605)
..+.+-+.+|+.+|++.+.+.+|++++++|||.+...+..+. .+.+ ...++.++.... .-.|-||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~ 111 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETV 111 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEec
Confidence 467888999999999999999999999999998765543311 1211 223455543322 235777765
No 186
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=56.12 E-value=27 Score=30.14 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=47.6
Q ss_pred CCCCceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecCCC--------------------cc---c---------c
Q 007395 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQ--------------------RS---T---------S 217 (605)
Q Consensus 171 ~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~~~--------------------~~---~---------~ 217 (605)
.+....++.|+...++.+++..||+.+||. .+.+-|-.-.... +. . .
T Consensus 19 lDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~ 98 (128)
T 2kc2_A 19 LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELN 98 (128)
T ss_dssp TTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEE
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCC
Confidence 455778999999999999999999999998 3333332211000 00 0 1
Q ss_pred ccCCCCCChhhhccCCCCeEEE
Q 007395 218 PLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 218 ~l~~~~~tl~d~~l~~~~~lll 239 (605)
.| |.+.||.+.|+.++++|+|
T Consensus 99 WL-D~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 99 WL-DHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp EE-CSSSCHHHHTCCTTSEEEE
T ss_pred cc-cCCCcHHHcCCCCCCEEEE
Confidence 22 4578999999999999888
No 187
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.60 E-value=45 Score=26.45 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=44.2
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHc--CCCCCCcEEEEEEECCceeEecccCccccc----CcCCC
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC--CLKIDEGLLLAEVYNHQIFRFFENPAELIS----SIKDD 578 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~----~i~~~ 578 (605)
.+.+++...++. ...+.+.+....++.+|++.|+... +++ +++.-++ |.. +.+. |+.+++ .|.++
T Consensus 7 ~m~i~Vk~~~~~--~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~-~~~QrLi--~~G---k~L~-D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 7 GVTLLVKSPNQR--HRDLELSGDRGWSVGHLKAHLSRVYPERPR-PEDQRLI--YSG---KLLL-DHQCLRDLLPKQEKR 77 (93)
T ss_dssp CCEEEEECSSSS--CCCEEEECCTTSCHHHHHHHHHHHSTTCCC-TTTCEEE--ETT---EECC-SSSCHHHHSCSSSCS
T ss_pred EEEEEEEeCCCC--eEEEEEecCCCCcHHHHHHHHHHHhcCCCC-hHHeEEE--ECC---EECc-CcCCHHHHhcCCCCC
Confidence 355666655554 2236677778999999999999998 888 4443332 333 5566 456675 44555
Q ss_pred CeEE
Q 007395 579 EHIV 582 (605)
Q Consensus 579 d~~~ 582 (605)
..|+
T Consensus 78 ~~i~ 81 (93)
T 1wgd_A 78 HVLH 81 (93)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 5554
No 188
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=53.58 E-value=26 Score=32.84 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=51.7
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEee
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~ 243 (605)
+.....+.+.+..++..|++..|+..|++.+.+|+..-. ..+. .+.|..++.+.+++.|-+-.+.
T Consensus 29 ~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG------~~i~-~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 29 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG------IRIQ-ADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT------EECC-TTCCTTTTTCCTTEEEEEECSC
T ss_pred CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC------Eecc-CCCChHHhhhcccccchhhccc
Confidence 445678899999999999999999999999999987632 3333 3678899999999887665443
No 189
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.20 E-value=24 Score=28.48 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=39.6
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEE
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYR 585 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e 585 (605)
.+.+.++...++.+|++.|...++++ +++.-+. +..+ .+ |+. +|. .|.+++.|++..
T Consensus 28 ~~~i~v~~~~TV~~LK~~I~~~tgip-~~~QrL~--~~Gk---~L-dd~-tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 28 KHDVKVPLDSTGSELKQKIHSITGLP-PAMQKVM--YKGL---VP-EDK-TLREIKVTSGAKIMVVG 86 (95)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCSC-STTCCCB--SSSB---CC-SSS-BHHHHCCCTTEEEEECC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEE--ECCe---eC-CcC-cHHHCCCCCCCEEEEEe
Confidence 36788999999999999999999998 4443332 3333 23 333 665 577777776543
No 190
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=53.16 E-value=54 Score=27.04 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=39.6
Q ss_pred EEEEecC-CCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMK-HGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+.+.. ..++.+|++.|....|+++....++ +.. +.+. |+.+|+ .|.+++.|++.
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~---~~G---k~L~-D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQKLS---GKA---GFLK-DNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE---CSS---SBCC-TTSBTTTTTCSSSCEEEEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE---ECC---EECC-CCCcHHHCCCCCCCEEEEE
Confidence 5678886 8999999999999999984443333 232 3455 466775 57777777654
No 191
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=52.60 E-value=38 Score=26.93 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=48.1
Q ss_pred ccceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 161 FXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 161 yp~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
-+..++++... .-+.+.+...-++.+|+.+++..+.+. ...+..+.....+ +.+.+ |..|..+ |....+|+|
T Consensus 11 ~~~KVK~yy~D--DIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde~~g-~~i~s-D~dl~~a-iqrn~KL~l 82 (85)
T 1ip9_A 11 KTTKIKFYYKD--DIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSG-EEIKT-DSQVSNI-IQAKLKISV 82 (85)
T ss_dssp CCEEEEECBTT--CCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCC-SCCCS-HHHHHHH-HHTTCCEEE
T ss_pred CceEEEEEecC--cEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCCCCC-CcccC-HHHHHHH-HHhcCeeEE
Confidence 34466666654 378899999999999999999999984 5555555554455 34432 3344433 556666665
No 192
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=52.37 E-value=73 Score=28.63 Aligned_cols=67 Identities=10% Similarity=0.163 Sum_probs=46.4
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
.+++...+|.. +.+.+....++.+|++.|....|++ +++.-+ ++.. +.+. |+.++. .|.+++.|++.
T Consensus 2 qI~Vk~~~Gk~----~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrL--i~~G---k~L~-D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKT----ITLEVESSDTIDNVKSKIQDKEGIP-PDQQRL--IFAG---KQLE-DGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp EEEEEETTSCE----EEEECCTTCBHHHHHHHHHHHHCCC-TTTEEE--EETT---EECC-TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCE----EEEEeCCCCCHHHHHHHHHHHHCcC-HHHEEE--EECC---cccc-CcCcHHHcCCCCCCEEEEE
Confidence 34555566642 6688889999999999999999998 554433 2344 3355 466775 57778877654
No 193
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.13 E-value=47 Score=26.76 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=39.2
Q ss_pred E-EEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 F-TVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+ .+.+....++.+|++.|...+|++.....++ +.. +.+.| + +++ .|.+++.|+.-
T Consensus 19 ~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi---~~G---k~L~D-~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 19 FEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKG---GTLKD-D-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE---ETT---EECCS-S-CCCSCCCCSSCEEECC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECC---cCCCC-C-CHHHCCCCCCCEEEEE
Confidence 6 4788889999999999999999994333333 344 34553 4 775 56788877653
No 194
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.78 E-value=27 Score=27.94 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=44.9
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+++... +. .+.+.+....++.+|++.|+...+++ +++.-+ ++.. +.+. |+.+|. .|.+++.|
T Consensus 16 ~~m~i~Vk~~-g~----~~~~~v~~~~TV~~LK~~I~~~~gip-~~~qrL--~~~G---k~L~-D~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP-QD----CHEFFLAENSNVRRFKKQISKYLHCN-ADRLVL--IFTG---KILR-DQDILSQRGILDGSTV 83 (96)
T ss_dssp CEEEEEEECS-SS----EEEEEEETTCCHHHHHHHHHHHTCSC-TTTBCC--EETT---EECC-TTSCHHHHTCCTTEEE
T ss_pred CcEEEEEEEC-Ce----EEEEEECCCCCHHHHHHHHHHHhCCC-HHHEEE--EECC---EECC-CcCCHHHCCCCCCCEE
Confidence 3455555554 33 25677888999999999999999998 444333 2333 3455 466675 56777766
Q ss_pred EEE
Q 007395 582 VAY 584 (605)
Q Consensus 582 ~~~ 584 (605)
++.
T Consensus 84 ~l~ 86 (96)
T 1wx8_A 84 HVV 86 (96)
T ss_dssp ECC
T ss_pred EEE
Confidence 543
No 195
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=50.43 E-value=47 Score=30.66 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=47.1
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+++..++|.. +.+.+....++.+|++.|....+++ ++..-+. +.. +.+. |+.+|+ .|.+++.|+
T Consensus 105 eMqI~VKtl~Gkt----~~l~V~~s~TV~~LK~kI~~~~gIp-~~~QrLi--~~G---k~L~-D~~tL~dygI~~gstI~ 173 (189)
T 3q3f_A 105 GGQIFVKTLTGKT----ITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKESTLH 173 (189)
T ss_dssp CEEEEEECTTSCE----EEEEECTTCBHHHHHHHHHHHHCCC-GGGCCEE--ETT---EECC-TTCBGGGGTCCTTCEEE
T ss_pred ceeeeeecCCCCE----EEEEeCCCCcHHHHHHHHHhccCCC-HHHEEEE--ECC---EECC-CCCCHHHCCCCCCCEEE
Confidence 3556666666653 6678889999999999999999998 4333332 333 4456 466775 577777776
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
+.
T Consensus 174 Lv 175 (189)
T 3q3f_A 174 LV 175 (189)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 196
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=50.38 E-value=6.7 Score=34.27 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.4
Q ss_pred CCCccccCCCCcchhHHHHHHh
Q 007395 318 GLAGLQNLGNTCFMNSALQCLV 339 (605)
Q Consensus 318 g~~GL~NlGNTCYmNSvLQ~L~ 339 (605)
.+.|+-|..++|.+|++||...
T Consensus 12 ~fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHH
Confidence 4788999999999999999763
No 197
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.82 E-value=1e+02 Score=24.87 Aligned_cols=73 Identities=10% Similarity=0.003 Sum_probs=45.3
Q ss_pred eEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEee
Q 007395 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (605)
Q Consensus 164 ~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~ 243 (605)
.++|..+.....+-+.. .++++|+.++|..|+++....+|....+. ..+++++ -...-+.++++|-+..
T Consensus 11 pfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDG----T~VddEe----yF~tLp~nT~lmvL~~ 79 (91)
T 2eel_A 11 PFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDG----TVVDTEE----FFQTLGDNTHFMILEK 79 (91)
T ss_dssp EEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTC----CBCCCHH----HHTTSCSSEEEEEEET
T ss_pred CEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCC----cEEechh----hhhhCCCCCEEEEEcC
Confidence 34555333323344444 57999999999999998777888875432 3343321 1233445566666777
Q ss_pred cCcc
Q 007395 244 DNGI 247 (605)
Q Consensus 244 ~g~~ 247 (605)
+..|
T Consensus 80 ge~W 83 (91)
T 2eel_A 80 GQKW 83 (91)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 7889
No 198
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.56 E-value=53 Score=27.84 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=42.5
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
++.+.+....++.+|++.++...+++ ++++.+ +|..+ .+. |+++|. .|.++..|+
T Consensus 28 k~tv~v~~d~TV~dLKe~ls~~~~iP-~e~qrL--Iy~GK---iLK-D~eTL~~~gIk~g~TIh 84 (118)
T 2daf_A 28 EIVIPFKVDTILKYLKDHFSHLLGIP-HSVLQI--RYSGK---ILK-NNETLVQHGVKPQEIVQ 84 (118)
T ss_dssp EEEEEECSSSCSHHHHHHHHHHHTCC-TTTEEE--EETTE---EEC-SSCCHHHHSCCSSCEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHhhhCCC-hHHEEE--EECCe---EcC-CcchHHHcCCCCCCEEE
Confidence 47888989999999999999999998 776664 45654 455 567775 678877664
No 199
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.33 E-value=40 Score=26.87 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=45.8
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+++...+|. .+.+.+....++.+|++.|.... ...-+|++ .. +.+.|++.+|. .|.+++.|
T Consensus 6 ~~m~i~Vk~~~g~----~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~----~G---k~L~D~~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 6 SGINVRLKFLNDT----EELAVARPEDTVGTLKSKYFPGQ--ESQMKLIY----QG---RLLQDPARTLSSLNITNNCVI 72 (95)
T ss_dssp CSEEEEEEETTTE----EEEEEECSSSBHHHHHHHHSSST--TTTCEEEE----TT---EECCCSSCBTTTTTCCTTEEE
T ss_pred CeEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHhhC--cCcEEEEE----CC---EEccCCcCCHHHcCCCCCCEE
Confidence 3456666666654 26788889999999999998877 32444433 32 46664437776 56777777
Q ss_pred EEEE
Q 007395 582 VAYR 585 (605)
Q Consensus 582 ~~~e 585 (605)
++.-
T Consensus 73 ~l~~ 76 (95)
T 1wia_A 73 HCHR 76 (95)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6653
No 200
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=45.59 E-value=28 Score=27.63 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=40.4
Q ss_pred EEE-EecCCCcHhHHHHHHHHHcCCCCCCcEEEEEE-ECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTV-TLMKHGCCKDLILALSTACCLKIDEGLLLAEV-YNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+ .+....++.+|++.|....|++ +++.-+.-. +.. +.+. |+.+++ .|.+++.|+.-
T Consensus 19 ~~i~~v~~~~TV~~lK~~I~~~~gip-~~~QkLi~~k~~G---k~L~-D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 19 YSVTTLSEDDTVLDLKQFLKTLTGVL-PERQKLLGLKVKG---KPAE-NDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp EEECSCCSSSBHHHHHHHHHHHTCCC-TTTCEEESCEETT---EECC-TTSBHHHHTCCTTEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCcC-HHHeEEEeeccCC---cCcC-CCCCHHHcCCCCCCEEEEE
Confidence 567 7888999999999999999998 555444311 333 3455 456675 56777777654
No 201
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=45.37 E-value=1.1e+02 Score=24.45 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=47.4
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+.+...+|. .+.+.+.+..++..|.++.++..|++ ++.+-+ ++..+ -+. ++.+.. .+.++|.|
T Consensus 6 ~~i~ikVk~~~g~----~i~~~v~~~t~l~kl~~~y~~~~gi~-~~~~rf--~FdG~---~l~-~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 6 DHINLKVAGQDGS----VVQFKIKRHTPLSKLMKAYCERQGLS-MRQIRF--RFDGQ---PIN-ETDTPAQLEMEDEDTI 74 (94)
T ss_dssp CEEEEEEECTTSC----EEEEEEETTSCTHHHHHHHHHHHTCC-GGGEEE--EETTE---ECC-TTCCTTTTTCCTTCEE
T ss_pred CeEEEEEECCCCC----EEEEEECCCCHHHHHHHHHHHHhCCC-cccEEE--EECCE---EcC-CCCCHHHcCCCCCCEE
Confidence 3455666666664 25677889999999999999999998 555444 23322 123 334443 67889999
Q ss_pred EEEE
Q 007395 582 VAYR 585 (605)
Q Consensus 582 ~~~e 585 (605)
.++.
T Consensus 75 dv~~ 78 (94)
T 2io1_B 75 DVFQ 78 (94)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 202
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=45.32 E-value=35 Score=27.27 Aligned_cols=56 Identities=5% Similarity=0.035 Sum_probs=40.2
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+.+....++.+|++.|++..+++ +++..+. +.. +.+. |+.++. .|.+++.|++.
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi--~~G---k~L~-D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIA-PEDQVVL--LAG---APLE-DEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCC-GGGCEEE--ETT---EECC-TTSBHHHHTCCSSCEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcC-hhHEEEE--ECC---EECC-CCCcHHHCCCCCCCEEEEE
Confidence 5678888999999999999999998 5544442 343 3455 566775 57777777653
No 203
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=44.23 E-value=23 Score=27.89 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=41.6
Q ss_pred EEEEecCCCCCceeEEEE-ecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCce-eEec--ccCccccc--CcCCCCeE
Q 007395 508 VTVFYANGSGLPMPFTVT-LMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQI-FRFF--ENPAELIS--SIKDDEHI 581 (605)
Q Consensus 508 ~~~~~~d~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~-~~~~--~~~~~~~~--~i~~~d~~ 581 (605)
+.+...+|. ..+. ++...++.+|+++|++..|++ +++.-+. +. + .+-+ .|++.+++ .|.+++.|
T Consensus 3 i~vr~~~G~-----~~v~~l~~~~Tv~~Lk~~I~~~~gi~-~~~qrL~--~~--~p~k~l~l~~~~~tL~~~gl~~g~~l 72 (86)
T 2kzr_A 3 VRCKAKGGT-----HLLQGLSSRTRLRELQGQIAAITGIA-PGSQRIL--VG--YPPECLDLSDRDITLGDLPIQSGDML 72 (86)
T ss_dssp EEEEETTEE-----EEECSCCTTCBHHHHHHHHHHHTCCC-TTTCCCE--ES--SCCCCCCCCCSSCBTTTSSCCTTCEE
T ss_pred EEEEcCCCC-----EEeeecCCCCCHHHHHHHHHHHhCCC-ccceEEE--eC--CCCcccccCCCCCCHHHcCCCCCCEE
Confidence 344455553 2355 778899999999999999997 3333221 11 2 1333 23566776 46778877
Q ss_pred EEE
Q 007395 582 VAY 584 (605)
Q Consensus 582 ~~~ 584 (605)
++-
T Consensus 73 ~v~ 75 (86)
T 2kzr_A 73 IVE 75 (86)
T ss_dssp ECC
T ss_pred EEE
Confidence 654
No 204
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=43.23 E-value=45 Score=28.37 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=51.8
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCC-----CCcEEEEEEECCceeEecccCcccc-cCcCCCCeEEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKI-----DEGLLLAEVYNHQIFRFFENPAELI-SSIKDDEHIVAYR 585 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~e~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~e 585 (605)
++++++-.++..++..+++...+... .+.++++++..++=...|..++..+ +.+.-+..||++.
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~ 91 (120)
T 2dhz_A 22 VTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACT 91 (120)
T ss_dssp CCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEEC
T ss_pred EEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 55788888999999999999888752 2379999999999888898666666 4678888998873
No 205
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=40.02 E-value=1.2e+02 Score=22.82 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
.+.+...+|. .+.+.+.+..++..|.++.++..|++ ++.+-+ ++... + +. ++++.. .+.++|.|.+|
T Consensus 3 ~lkV~~~~g~----~v~~~v~~~t~l~kl~~~y~~~~gi~-~~~~rf--~fdG~--~-l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 3 NLKVAGQDGS----VVQFKIKRHTPLSKLMKAYCERQGLS-MRQIRF--RFDGQ--P-IN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEECTTSC----EEEEEECTTSCTHHHHHHHHHHHTCC-TTTCEE--EETTE--E-CC-TTCCTTTTTCCTTEEEEEE
T ss_pred EEEEECCCCC----EEEEEECCCChHHHHHHHHHHHhCCC-cceEEE--EECCE--E-cC-CCCCHHHcCCCCCCEEEEE
Confidence 3444445554 26788889999999999999999998 444333 12221 1 23 233333 56788888776
No 206
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=39.05 E-value=1.3e+02 Score=23.94 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=46.0
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+.+...+|. .+.+.+.+..++..|.++.++..|++ ++.+-+ ++... + +. ++++.. .+.++|.|.
T Consensus 5 ~i~ikVk~~~g~----~v~~~vk~~t~l~kl~~~y~~~~gi~-~~~~rf--~FdG~--~-l~-~~~Tp~dl~medgD~Id 73 (91)
T 2io0_B 5 HINLKVAGQDGS----VVQFKIKRHTPLSKLMKAYCERQGLS-MRQIRF--RFDGQ--P-IN-ETDTPAQLEMEDEDTID 73 (91)
T ss_dssp EEEEEEECTTSC----EEEEEEETTSCTHHHHHHHHHHTTCC-STTEEE--EETTE--E-CC-TTCCTTTTTCCTTEEEE
T ss_pred eEEEEEECCCCC----EEEEEECCCChHHHHHHHHHHHhCCC-cccEEE--EECCE--E-cC-CCCCHHHcCCCCCCEEE
Confidence 355555556664 26678889999999999999999998 554433 22222 1 23 233443 678899998
Q ss_pred EEE
Q 007395 583 AYR 585 (605)
Q Consensus 583 ~~e 585 (605)
++.
T Consensus 74 v~~ 76 (91)
T 2io0_B 74 VFQ 76 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 207
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=38.67 E-value=98 Score=25.76 Aligned_cols=71 Identities=7% Similarity=-0.060 Sum_probs=50.3
Q ss_pred EecCCCCceEEEeChhchHHHHHHHHHHHhC--------CCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEE
Q 007395 168 IDSRDNSQTVIRLSKKASTRQLYEKVCKLRG--------IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 168 ~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~--------v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~lll 239 (605)
+..+++.-..+.+++..|+.++|..+.+..+ .++..+.+.-+...... +.+.|+++-|.|+.+..+-.-++
T Consensus 24 ~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~-Eel~DEsrrL~dv~pf~piLklv 102 (108)
T 2v1y_A 24 CLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAER-EEFFDETRRLCDLRLFQPFLKVI 102 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCE-EEECCTTSBGGGSCBSSSEEEEE
T ss_pred EEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceE-EEeEcCceEEEeccccceEEEEE
Confidence 4456666678889999999999999988732 23666666665553344 66778888899998876633333
No 208
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.99 E-value=1.7e+02 Score=23.78 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=45.6
Q ss_pred eEEEEEecCCCCCceeEEEEecC---------CCcHhHHHHHHHHHc--CCCCCCc-EEEEEEECCceeEecccCccccc
Q 007395 506 MTVTVFYANGSGLPMPFTVTLMK---------HGCCKDLILALSTAC--CLKIDEG-LLLAEVYNHQIFRFFENPAELIS 573 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~--~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~ 573 (605)
+.+++....+. ....+.+.++. ..++.+|++.|.... +++ +++ .-+ +|.. +.+. |+.+|+
T Consensus 13 ~~i~Vk~~~~~-~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip-~~~~qrL--i~~G---k~L~-D~~tL~ 84 (107)
T 1x1m_A 13 WHLAVKLADQP-LAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP-DPELIDL--IYCG---RKLK-DDQTLD 84 (107)
T ss_dssp CCEEEEETTCT-TSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC-CSSSEEE--EETT---EECC-TTCBHH
T ss_pred eEEEEEeCCCC-CccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC-hhhcEEE--EECC---eECC-CCCcHH
Confidence 44555555541 11235666544 489999999999999 998 555 443 3444 3455 566775
Q ss_pred --CcCCCCeEEEEE
Q 007395 574 --SIKDDEHIVAYR 585 (605)
Q Consensus 574 --~i~~~d~~~~~e 585 (605)
.|.+++.|++.-
T Consensus 85 ~y~i~~g~~i~lv~ 98 (107)
T 1x1m_A 85 FYGIQPGSTVHVLR 98 (107)
T ss_dssp HHTCCTTCEEEEEE
T ss_pred HcCCCCCCEEEEEe
Confidence 677888776643
No 209
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=36.91 E-value=7.2 Score=39.94 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 173 ~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
.....+.+.+..++..|++..|+..|++.+.+|+..- + ..+.+ +.|.+++++++|+.|-+-.+
T Consensus 30 g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFd-----G-~rI~~-~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 30 SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD-----G-IRIQA-DQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEEC-----C-eECCC-CCChHHcCCCccchhhhhhc
Confidence 3567788999999999999999999999999998862 2 44543 68999999999998666444
No 210
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=35.84 E-value=1.5e+02 Score=22.77 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=45.8
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEE
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~ 582 (605)
.+.+.+...+|.. .+.+.+.+..++..|.++.++..|++ ++.+-+ ++... -+. ++++.. .+.++|.|.
T Consensus 7 ~i~ikV~~~~g~~---~i~~~i~~~t~l~kl~~~y~~~~gi~-~~~~rf--~fdG~---~l~-~~~Tp~~l~medgD~Id 76 (79)
T 3a4r_A 7 ELRLRVQGKEKHQ---MLEISLSPDSPLKVLMSHYEEAMGLS-GHKLSF--FFDGT---KLS-GKELPADLGLESGDLIE 76 (79)
T ss_dssp CEEEEEECSSTTC---EEEEEECTTSCHHHHHHHHHHHHTCT-TCCCEE--EETTE---ECC-SCCCHHHHTCCTTCEEE
T ss_pred EEEEEEEeCCCCE---EEEEEECCCChHHHHHHHHHHHhCCC-cccEEE--EECCE---EcC-CCCCHHHcCCCCCCEEE
Confidence 4566666666641 26688889999999999999999998 444333 12222 123 233332 678889887
Q ss_pred EE
Q 007395 583 AY 584 (605)
Q Consensus 583 ~~ 584 (605)
||
T Consensus 77 v~ 78 (79)
T 3a4r_A 77 VW 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 211
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.45 E-value=8.3 Score=33.20 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+.+....++.+|++.|....|++ ++...+. +.. +.+. |+.+|+ .|.+++.|+++
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi--~~G---k~L~-D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 13 ITLEVESSDTIDNVKSKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCcC-hHHEEEE--ECC---EECC-CCCchhhhccCCCCEEEEE
Confidence 5567778899999999999999998 4443332 232 3345 466665 46667766544
No 212
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=33.45 E-value=46 Score=31.26 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=41.3
Q ss_pred CCCCccccCCCCcchhHHHHHHhCChhHHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHHHH
Q 007395 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKL 396 (605)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~~l 396 (605)
.|.+=|.=.-|.||+||++=.|=++... + .++..++..+ .|..|...+
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----~-----------------------~~aw~~f~~G-----d~~~fV~~~ 58 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF----N-----------------------NEAWEKFKKG-----DVMDFVNLC 58 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC----C-----------------------CHHHHHHTTT-----CCHHHHHHH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh----H-----------------------HHHHHHHhCC-----ChHHHHHHH
Confidence 4556666678999999998777655543 1 1111111121 244444333
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHH
Q 007395 397 ARFAPQFSGYNQHDSQELLAFLLD 420 (605)
Q Consensus 397 ~~~~~~F~~~~QqDA~Efl~~LLd 420 (605)
-... .+.-++--||+++|..||.
T Consensus 59 Ya~~-~~~~G~~gDa~~~L~~Ll~ 81 (211)
T 3mp2_A 59 YAAT-TLARGHSGDAEYLLELMLN 81 (211)
T ss_dssp HHHH-TCCTTSCCCHHHHHHHHHT
T ss_pred HHHc-CCCCCCCcCHHHHHHHHHH
Confidence 2221 3445677899999999983
No 213
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=33.00 E-value=90 Score=31.08 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=38.8
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 583 (605)
+.+.+....++.+|++.|+...|++ +++.-+. +.. +.+. |+.+|+ .|.+++.|++
T Consensus 246 ~~leV~~s~TV~dLK~kI~~~~GIp-~~~QRLi--~~G---k~L~-D~~TLsdygI~~gstL~L 302 (307)
T 3ai5_A 246 ITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLI--FAG---KQLE-DGRTLSDYNIQKESTLHL 302 (307)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCC-GGGCEEE--ETT---EECC-TTSBTGGGTCCTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcC-hHHEEEE--eCC---eecC-CCCCHHHcCCCCCCEEEE
Confidence 5678888999999999999999998 4444332 333 3455 566775 5667776654
No 214
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.82 E-value=63 Score=26.53 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=45.4
Q ss_pred eEEEEEecCCCCCceeEEEEec-CCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCce-----eE---ec---ccCccccc
Q 007395 506 MTVTVFYANGSGLPMPFTVTLM-KHGCCKDLILALSTACCLKIDEGLLLAEVYNHQI-----FR---FF---ENPAELIS 573 (605)
Q Consensus 506 ~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~-----~~---~~---~~~~~~~~ 573 (605)
+.+++...+|. ..+.+. ...++.+|++.|...+++++....+. +..+. .. .+ .+|+.+|.
T Consensus 8 M~irvrs~~G~-----~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~---~~~~~~~~k~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 8 TMLRVRSRDGL-----ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLS---TNRNLLLAKSPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEEECSSCE-----EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCB---SSGGGGTCCSHHHHTTCCSSCCTTCBGG
T ss_pred EEEEEECCCCC-----EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEE---ECCccccccCccccccccccCCCCCCHH
Confidence 55666666663 467788 88999999999999999984332221 11110 00 11 23567776
Q ss_pred --CcCCCCeEEEE
Q 007395 574 --SIKDDEHIVAY 584 (605)
Q Consensus 574 --~i~~~d~~~~~ 584 (605)
.|.+++.||+-
T Consensus 80 ~~gi~~G~~L~l~ 92 (107)
T 1wf9_A 80 SLNLAHGSMVYLA 92 (107)
T ss_dssp GTCCCTTCEEECC
T ss_pred HCCCCCCCEEEEE
Confidence 57788888654
No 215
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.64 E-value=1.5e+02 Score=24.30 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=53.5
Q ss_pred ceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECC-ceeEecccCcccc
Q 007395 503 TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH-QIFRFFENPAELI 572 (605)
Q Consensus 503 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~~~ 572 (605)
...+.+.++..||.. -.+.+....+.+++.+.|+....+......-++|..-. ++-|+|.|....+
T Consensus 7 ~~k~vvkvf~~Dgss----ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vv 73 (100)
T 1wgr_A 7 GRPHVVKVYSEDGAC----RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVV 73 (100)
T ss_dssp CSCEEEEEEETTSCE----EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHH
T ss_pred CCCEEEEEEecCCCE----EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHH
Confidence 345678888899875 46888999999999999999888888888888988877 7889999544333
No 216
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=32.50 E-value=88 Score=25.90 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=40.0
Q ss_pred EEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEE
Q 007395 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 584 (605)
Q Consensus 522 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 584 (605)
+.+.+....++.+|++.|....|++ +++.-+. +.. +.+. |+.+|. .|.+++.|++.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrL~--~~G---k~L~-D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMP-AGKQKLQ--YEG---IFIK-DSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCC-TTTEEEE--ETT---EEEC-TTSBHHHHTCCSSCEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCC-hHHEEEE--ECC---EECC-CCCCHHHCCCCCCCEEEEE
Confidence 6677888899999999999999998 5554442 333 3455 466775 57777776553
No 217
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=32.23 E-value=1e+02 Score=31.37 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=54.1
Q ss_pred ceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCC----CCceeEEEEecCCC-ccccccCCCCCChhhhccCCCCeE
Q 007395 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGI----EQEKARIWDYFNKQ-RSTSPLDVSDQTLDDAMLQMDQDI 237 (605)
Q Consensus 163 ~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v----~~~~~RLw~~~~~~-~~~~~l~~~~~tl~d~~l~~~~~l 237 (605)
+.|+|... ....++.+++..|+.+....+++.+.- +.++.-||...... +. .-|.. +.||+.+++.+|..+
T Consensus 4 ~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~-~Wl~~-~~~l~~y~~~~~~~l 79 (371)
T 3ivf_A 4 LSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKG-IWLEA-GKALDYYMLRNGDTM 79 (371)
T ss_dssp EEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGC-EECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcC-EeccC-CCCHHHhCCCCCcee
Confidence 34555554 457899999999999999999998753 47888999865532 22 33554 569999999999855
Q ss_pred EE
Q 007395 238 LL 239 (605)
Q Consensus 238 ll 239 (605)
..
T Consensus 80 ~~ 81 (371)
T 3ivf_A 80 EY 81 (371)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 218
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=31.51 E-value=1.9e+02 Score=27.01 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=50.2
Q ss_pred eeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEEecCCCC
Q 007395 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYRFDRKQG 591 (605)
Q Consensus 520 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~~~~~ 591 (605)
..+.+.+.+..++.++.+.+++..+++....+=+=.++..+-+..+.+++.+|. .|.+++. ++.|+-..++
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~-illE~r~~dg 212 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV-LVIEQKNEDG 212 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCE-EEEEECCCC-
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCE-EEEEEecCCC
Confidence 346788899999999999999999998433566666666666666665566774 4555544 4577765443
No 219
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=31.06 E-value=1.7e+02 Score=28.31 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=47.1
Q ss_pred cceEEEEecCCCCceEEEeChhchHHHHHHHHHHHhCCC-CceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEE
Q 007395 162 XLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (605)
Q Consensus 162 p~~l~i~~~~~~~~~~i~vS~~~tv~~l~~~l~~~~~v~-~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle 240 (605)
|+.++|..... ...+.++...|+.++.+.+|+.+|+. .+-.-|+.....+.. ..| +.++.+.+.....+..+.+.
T Consensus 1 ~i~~~V~l~d~--~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~-~wL-d~~~~l~~q~~~~~~~~~l~ 76 (294)
T 1ef1_A 1 TISVRVTTMDA--ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFS-TWL-KLNKKVTAQDVRKESPLLFK 76 (294)
T ss_dssp CEEEEEEETTE--EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCE-EEC-CSSSBGGGSCBCCCSSEEEE
T ss_pred CEEEEEEECCc--eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCce-eec-ccccCHHhhccCCCCCEEEE
Confidence 34556666543 46799999999999999999999998 444566654322211 123 23556665444444444443
Q ss_pred Ee
Q 007395 241 VQ 242 (605)
Q Consensus 241 ~~ 242 (605)
++
T Consensus 77 fr 78 (294)
T 1ef1_A 77 FR 78 (294)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 220
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=30.63 E-value=1.9e+02 Score=23.01 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=45.5
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+.+...+|. .+.+.+.+..++..|.++.++..|++ ++.+-| +|... ++ . ++.+.. .+.++|.|
T Consensus 16 ~~i~ikV~~~~g~----~i~~~v~~~t~l~kl~~~y~~~~gi~-~~~~rf--~fdG~--~l-~-~~~Tp~dl~medgD~I 84 (93)
T 2d07_B 16 DHINLKVAGQDGS----VVQFKIKRHTPLSKLMKAYCERQGLS-MRQIRF--RFDGQ--PI-N-ETDTPAQLEMEDEDTI 84 (93)
T ss_dssp CEEEEEEECTTSC----EEEEEEETTSCHHHHHHHHHHHHTCC-GGGEEE--EETTE--EC-C-TTCCTTTTTCCTTEEE
T ss_pred CeEEEEEECCCCC----EEEEEEccCCHHHHHHHHHHHHhCCC-ccceEE--EECCE--Ec-C-CCCCHHHcCCCCCCEE
Confidence 3455555555654 25677888999999999999999998 554433 22222 22 2 233333 57788888
Q ss_pred EEEE
Q 007395 582 VAYR 585 (605)
Q Consensus 582 ~~~e 585 (605)
.++.
T Consensus 85 dv~~ 88 (93)
T 2d07_B 85 DVFQ 88 (93)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7763
No 221
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=30.04 E-value=2.4e+02 Score=24.50 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=49.5
Q ss_pred eeeeccceEEEEecCC-----CCceEEEeChhchHHHHHHHHHHHhC--CC------CceeEE-EEecCCCccccccCCC
Q 007395 157 RVEVFXLCLKLIDSRD-----NSQTVIRLSKKASTRQLYEKVCKLRG--IE------QEKARI-WDYFNKQRSTSPLDVS 222 (605)
Q Consensus 157 ~vElyp~~l~i~~~~~-----~~~~~i~vS~~~tv~~l~~~l~~~~~--v~------~~~~RL-w~~~~~~~~~~~l~~~ 222 (605)
.||.-|+.+.+..... .....+.+-.-+||.++|+++...+- +| .+++.| |+.+.... -.|.|.
T Consensus 19 ~vey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~--liL~D~ 96 (138)
T 2r2o_A 19 DVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGH--LILSDE 96 (138)
T ss_dssp ---CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCE--EEECSS
T ss_pred cceeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCc--eEeecc
Confidence 6788888888765321 24566777777999999999999863 43 344554 65332221 123332
Q ss_pred C------------CChhhhccCCCCeEEE
Q 007395 223 D------------QTLDDAMLQMDQDILL 239 (605)
Q Consensus 223 ~------------~tl~d~~l~~~~~lll 239 (605)
| .||..+++.+|..+.+
T Consensus 97 D~tS~~~~~wkrLNTL~HY~V~Dga~l~l 125 (138)
T 2r2o_A 97 DVTSEVQGLWRRLNTLQHYKVPDGATVAL 125 (138)
T ss_dssp STTCCEETTEEECCBHHHHTCCTTCEEEE
T ss_pred CCcccccCCceeecchhccCCCCCCEEEE
Confidence 2 3788888888887776
No 222
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=29.81 E-value=11 Score=39.05 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCCceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe
Q 007395 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (605)
Q Consensus 172 ~~~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~ 242 (605)
+.....+.+.+..+++.|++..|+..|++...+|+..-+ ..|. ++.|.+++++++|+.|-+-.+
T Consensus 38 ~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G------~~i~-~~~Tp~~l~med~d~i~~~~~ 101 (389)
T 4da1_A 38 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG------IRIQ-ADQAPEDLDMEDNDIIEAHRE 101 (389)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECC------EEcC-CCCCHHHcCCCCCCEeeeeec
Confidence 335667899999999999999999999999999987632 3444 368999999999998776544
No 223
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.39 E-value=1.7e+02 Score=23.97 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=45.1
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+.+...+|. .+.+.+.+..++..|.++.++..|++ ++.+-| +|... + +. ++.+.. .+.++|.|
T Consensus 23 ~~I~IkVk~~~g~----~i~~kVk~~t~l~kL~~~y~ek~gi~-~~~~rf--~FdG~--~-l~-~~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 23 DHINLKVAGQDGS----VVQFKIKRHTPLSKLMKAYCERQGLS-MRQIRF--RFDGQ--P-IN-ETDTPAQLEMEDEDTI 91 (104)
T ss_dssp CCEEEEEECSSSC----EEEEEECTTSCHHHHHHHHHHHHTCC-TTTSCE--ESSSS--B-CC-TTSCTTTTTCCTTEEE
T ss_pred CeEEEEEECCCCC----EEEEEEcCCChHHHHHHHHHHHhCCC-cceEEE--EECCE--E-cC-CCCCHHHcCCCCCCEE
Confidence 4566666666664 26788889999999999999999998 443322 11111 1 12 233333 57788888
Q ss_pred EEE
Q 007395 582 VAY 584 (605)
Q Consensus 582 ~~~ 584 (605)
.++
T Consensus 92 dv~ 94 (104)
T 1wz0_A 92 DVF 94 (104)
T ss_dssp EEC
T ss_pred EEE
Confidence 776
No 224
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=28.46 E-value=75 Score=31.77 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=43.1
Q ss_pred CCCCCccccCCCCcchhHHHHHHhCChh-HHHHHHhcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHHHHH
Q 007395 316 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (605)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~-f~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~f~~ 394 (605)
..|.+=|.=.-|.||+||++=.|=++.. |+.. .+ +++..++..+ .|..|..
T Consensus 99 ~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~~-------------------~l----~~aw~~f~~G-----d~~~FVa 150 (315)
T 2fe8_A 99 VGGLTSIKWADNNCYLSSVLLALQQLEVKFNAP-------------------AL----QEAYYRARAG-----DAANFCA 150 (315)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCCCBSSH-------------------HH----HHHHHHHHHT-----CCHHHHH
T ss_pred ECCEEEEeecCCccHHHHHHHHHHhcCCccCCH-------------------HH----HHHHHHHhCC-----ChHHHHH
Confidence 3456666777899999999766644322 1211 12 2222222233 3555655
Q ss_pred HHhhhcCCCCCCCCccHHHHHHHHHH
Q 007395 395 KLARFAPQFSGYNQHDSQELLAFLLD 420 (605)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd 420 (605)
.+-... ...-++--||+++|..||.
T Consensus 151 ~~Ya~~-~~~~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 151 LILAYS-NKTVGELGDVRETMTHLLQ 175 (315)
T ss_dssp HHHHHT-TCCTTSCCCHHHHHHHHHT
T ss_pred HHHHhc-CCCCCCCccHHHHHHHHHh
Confidence 553332 2345677899999999954
No 225
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=27.97 E-value=1.6e+02 Score=25.24 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=38.4
Q ss_pred eEEEeCh----hchHHHHHHHHHHHhCCCCceeEEEEecCCCcccccc------CCCCCChhhhccCCCCeEEE
Q 007395 176 TVIRLSK----KASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL------DVSDQTLDDAMLQMDQDILL 239 (605)
Q Consensus 176 ~~i~vS~----~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l------~~~~~tl~d~~l~~~~~lll 239 (605)
..+.++. ..|+.+|.+.+...+|... .+-+.+.... .+| ...+++|.+++++.|..|++
T Consensus 8 gvl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~----rLLyD~DfDDnl~k~L~dLgv~~gsfLtv 76 (127)
T 3onh_A 8 GVIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQ----RLLFDYDFEDLNDRTLSEINLGNGSIILF 76 (127)
T ss_dssp EEEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTT----EEEEETTBCTTTTSBTTTTTCCTTCEEEE
T ss_pred EEEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCC----CeEeCCCccccccCcHHHcCcCCCcEEEE
Confidence 3455654 4699999999988898763 3333321100 111 22468999999999988777
No 226
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=27.66 E-value=2.2e+02 Score=22.30 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=44.3
Q ss_pred EEEEEecCCCCCceeEEEEecCCCcHhHHHHHH-HHHcCCCCCCcEEEEEEECCceeEecccCccccc--Cc-CCCCeEE
Q 007395 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL-STACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SI-KDDEHIV 582 (605)
Q Consensus 507 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i-~~~d~~~ 582 (605)
.+++....|.. ..+.+.+....++.++++.| +...|++ +++.-+. |.. +.+. |+.+++ .| .++..|.
T Consensus 3 qI~VKtl~g~~--~~i~v~v~~~~TV~~lK~~I~~~~~gip-~~~QrLi--~~G---k~L~-D~~tL~~y~I~~~~stl~ 73 (87)
T 2lxa_A 3 HLTLKKIQAPK--FSIEHDFSPSDTILQIKQHLISEEKASH-ISEIKLL--LKG---KVLH-DNLFLSDLKVTPANSTIT 73 (87)
T ss_dssp EEEEEECSSSC--EECCEECCTTCBHHHHHHHHHHTTSCSS-STTEEEE--ETT---EECC-TTCBHHHHCCCGGGCEEE
T ss_pred EEEEEcCCCCE--EEEEEcCCCCCcHHHHHHHHHHHhcCCC-hHHEEEE--ECC---EECc-CcCCHHHcCCCCCCCEEE
Confidence 45555666643 22344556899999999999 9999998 5544432 333 5556 566675 45 3455555
Q ss_pred EEEec
Q 007395 583 AYRFD 587 (605)
Q Consensus 583 ~~e~~ 587 (605)
+---|
T Consensus 74 v~~~~ 78 (87)
T 2lxa_A 74 VMIKP 78 (87)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 44433
No 227
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=25.23 E-value=2.3e+02 Score=22.79 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=40.7
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHH-cCCCCCCcEEEEEEECCceeEecccCccccc----CcCCCC
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTA-CCLKIDEGLLLAEVYNHQIFRFFENPAELIS----SIKDDE 579 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~----~i~~~d 579 (605)
.+.+++...++.. ..+.+.+....++.+|++.|... .|..+++..-+ +|.. |.+. |+.+|+ .|.++.
T Consensus 23 ~m~I~VK~~~g~~--~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~G---k~L~-D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 23 PVTLIIKAPNQKY--SDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSG---RLLP-DHLQLKDILRKQDEYH 94 (99)
T ss_dssp CEEEEEECTTSSS--CCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETT---EEEC-TTSBTHHHHTTTCSEE
T ss_pred eEEEEEEcCCCCE--EEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECC---EECC-CCCCHHHHhcCCCCCC
Confidence 3556666555542 22567778999999999999975 45542233222 2333 4556 566775 455544
Q ss_pred eE
Q 007395 580 HI 581 (605)
Q Consensus 580 ~~ 581 (605)
.|
T Consensus 95 ti 96 (99)
T 2kdb_A 95 MV 96 (99)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 228
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=25.15 E-value=3.4e+02 Score=25.44 Aligned_cols=70 Identities=7% Similarity=0.121 Sum_probs=50.3
Q ss_pred eEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeEEEEEecCCCC
Q 007395 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYRFDRKQG 591 (605)
Q Consensus 521 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~e~~~~~~ 591 (605)
.+.+.+.+..++.++.+.+++..+++....+-+=.++..+-+..+.|.+.+|. .+. .+.....|+-..++
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~-~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLY-QGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCC-TTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCC-CCCEEEEEEecCCC
Confidence 35677899999999999999999998434677777776655566665667775 333 34566778775544
No 229
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=24.61 E-value=54 Score=26.82 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=40.6
Q ss_pred ceEEEeChhchHHHHHHHHHHH--hCCCCc---------eeEEEEecCCCcccccc-----CCCCCChhhhccCCCCeEE
Q 007395 175 QTVIRLSKKASTRQLYEKVCKL--RGIEQE---------KARIWDYFNKQRSTSPL-----DVSDQTLDDAMLQMDQDIL 238 (605)
Q Consensus 175 ~~~i~vS~~~tv~~l~~~l~~~--~~v~~~---------~~RLw~~~~~~~~~~~l-----~~~~~tl~d~~l~~~~~ll 238 (605)
...+.+++..|+++|.+.+++. +.+..- .-.||... . ..| .+.++++.++++.+|+.|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~---p--p~Lee~Tr~NL~k~l~eLgl~~g~ei~ 80 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQS---V--TSIEERTRPNLSKTLKELGLVDGQELA 80 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSS---C--HHHHHHHHHHHHSBSGGGTCCTTCEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeC---c--HHHHHHhHhhhhCCHHHhCCCCCCEEE
Confidence 4568899999999999999994 444311 23344211 0 011 2245679999999999988
Q ss_pred E
Q 007395 239 L 239 (605)
Q Consensus 239 l 239 (605)
|
T Consensus 81 V 81 (98)
T 1y8x_B 81 V 81 (98)
T ss_dssp E
T ss_pred E
Confidence 8
No 230
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=24.29 E-value=2.8e+02 Score=22.72 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=44.3
Q ss_pred eeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCCeE
Q 007395 504 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHI 581 (605)
Q Consensus 504 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~~ 581 (605)
..+.+.+.. +|. . ..+.+.+..++..|.++.++..|++ +..+-| +|... ++ . ++.+.. .+.++|.|
T Consensus 30 ~~I~IkV~~-~g~--~--i~fkIk~tt~l~kL~~ay~ek~gi~-~~~~rF--~FdG~--rl-~-~~~Tp~dl~medgD~I 97 (106)
T 2eke_C 30 THINLKVSD-GSS--E--IFFKIKKTTPLRRLMEAFAKRQGKE-MDSLRF--LYDGI--RI-Q-ADQTPEDLDMEDNDII 97 (106)
T ss_dssp SEEEEEEEC-SSC--E--EEEEEETTSCTHHHHHHHHHHHTCC-GGGEEE--EETTE--EC-C-TTCCTTTTTCCTTEEE
T ss_pred CeEEEEEec-CCc--E--EEEEeCCCCHHHHHHHHHHHHhCCC-cccEEE--EECCe--Ec-C-CCCCHHHcCCCCCCEE
Confidence 345555555 554 2 5677888999999999999999998 544433 12221 22 2 233332 56788888
Q ss_pred EEEE
Q 007395 582 VAYR 585 (605)
Q Consensus 582 ~~~e 585 (605)
.+|.
T Consensus 98 dv~~ 101 (106)
T 2eke_C 98 EAHR 101 (106)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 231
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=24.07 E-value=1.8e+02 Score=23.80 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHhCCCC--ceeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEeecCcc
Q 007395 184 ASTRQLYEKVCKLRGIEQ--EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI 247 (605)
Q Consensus 184 ~tv~~l~~~l~~~~~v~~--~~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~~~g~~ 247 (605)
.++++|+.++|..|+++. ..++|....++ ..+.+++ -+ ..-+.+++++-+..+.+|
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDG----T~VddEe-YF---~tLp~nT~lmvL~~ge~W 94 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDG----TIVDDDD-YF---LCLPSNTKFVALACNEKW 94 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSC----CBCCSSS-SS---SSSCSCCEEEEECSSSCC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCC----cEEechh-Hh---hcCCCCCEEEEEcCCCcc
Confidence 689999999999999974 45787765433 3444322 22 222344555556677778
No 232
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=21.44 E-value=1.7e+02 Score=29.93 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=48.6
Q ss_pred eeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHH---HcCCCCCCcEEEEEEECCceeEecccCccccc--CcCCCC
Q 007395 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALST---ACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDE 579 (605)
Q Consensus 505 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~i~~~d 579 (605)
.+.+++..+.|. .+.+.+....++.+|++.|.. ..|++ .++.-+ +|.. |.+. |+.+|+ .|.+++
T Consensus 7 ~M~I~VKtl~Gk----~~~leV~~~~TV~~LK~~I~~~~~~~gip-~~~QrL--iy~G---K~L~-D~~tL~dygI~~gs 75 (368)
T 1oqy_A 7 AVTITLKTLQQQ----TFKIRMEPDETVKVLKEKIEAEKGRDAFP-VAGQKL--IYAG---KILS-DDVPIRDYRIDEKN 75 (368)
T ss_dssp CCCEEEEETTTE----EEEECCCTTCBHHHHHHHHHHHTCSSSCC-STEEEE--ESSS---SEEC-SSSBTTTTCCCTTS
T ss_pred eEEEEEEeCCCC----EEEEEeCCCChHHHHHHHHHHHhCcCCCC-hhheEE--EECC---eecC-CcCCHHHcCCCCCC
Confidence 355666666664 266788889999999999998 46677 555555 3444 3455 466775 577787
Q ss_pred eEEEEEecC
Q 007395 580 HIVAYRFDR 588 (605)
Q Consensus 580 ~~~~~e~~~ 588 (605)
.|+..-+..
T Consensus 76 tIv~lv~k~ 84 (368)
T 1oqy_A 76 FVVVMVTKT 84 (368)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEecC
Confidence 774444433
Done!