Query 007396
Match_columns 605
No_of_seqs 711 out of 4475
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 23:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2E-119 5E-124 983.7 63.9 575 27-605 119-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-114 5E-119 967.0 62.3 572 25-603 282-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 5.5E-71 1.2E-75 617.4 44.1 536 27-580 82-653 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-61 2.7E-66 531.9 47.4 511 42-584 384-912 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.6E-61 7.8E-66 528.3 50.5 437 29-472 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-60 4E-65 520.4 42.3 487 93-598 84-581 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 3E-31 6.5E-36 214.4 7.6 106 472-595 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.8E-25 1.3E-29 250.9 45.1 412 42-467 445-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-24 2.8E-29 248.1 46.6 419 33-464 470-899 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 1.2E-19 2.7E-24 177.8 28.4 355 97-464 117-484 (966)
11 KOG4626 O-linked N-acetylgluco 99.9 6.6E-20 1.4E-24 179.7 25.8 383 65-462 118-516 (966)
12 PRK11447 cellulose synthase su 99.9 1.7E-17 3.6E-22 191.2 45.5 411 41-468 282-744 (1157)
13 PRK11788 tetratricopeptide rep 99.9 7.7E-19 1.7E-23 180.2 30.5 288 142-472 46-354 (389)
14 PRK11788 tetratricopeptide rep 99.8 2.2E-18 4.8E-23 176.8 32.8 295 102-432 41-348 (389)
15 PRK11447 cellulose synthase su 99.8 5.8E-17 1.3E-21 186.8 46.0 413 37-464 121-665 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.8 3.4E-17 7.3E-22 177.2 40.5 358 100-465 131-571 (615)
17 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.5E-21 172.5 41.1 350 77-436 17-386 (656)
18 TIGR00990 3a0801s09 mitochondr 99.8 3.8E-16 8.3E-21 169.0 38.6 350 74-434 135-574 (615)
19 PRK10049 pgaA outer membrane p 99.8 4.1E-16 8.9E-21 171.9 38.2 188 279-466 248-457 (765)
20 PRK15174 Vi polysaccharide exp 99.8 7.6E-16 1.7E-20 166.2 38.9 327 131-466 42-382 (656)
21 PRK10049 pgaA outer membrane p 99.8 2.8E-15 6E-20 165.3 43.4 396 32-438 19-463 (765)
22 PRK09782 bacteriophage N4 rece 99.8 8.9E-15 1.9E-19 161.6 45.9 188 274-466 515-707 (987)
23 PRK14574 hmsH outer membrane p 99.8 1.5E-14 3.3E-19 156.5 42.0 416 42-466 48-514 (822)
24 KOG4422 Uncharacterized conser 99.7 5.9E-13 1.3E-17 126.0 35.7 292 31-330 119-464 (625)
25 PRK14574 hmsH outer membrane p 99.7 7.2E-13 1.6E-17 143.7 39.7 397 33-438 73-520 (822)
26 PRK09782 bacteriophage N4 rece 99.7 7.2E-13 1.6E-17 146.6 39.5 379 74-468 321-743 (987)
27 KOG2003 TPR repeat-containing 99.6 8.5E-13 1.8E-17 125.6 29.8 419 25-452 195-710 (840)
28 KOG2076 RNA polymerase III tra 99.5 3.1E-11 6.7E-16 125.0 32.8 326 145-475 153-522 (895)
29 KOG2002 TPR-containing nuclear 99.5 2.4E-11 5.1E-16 126.6 31.7 411 45-466 253-746 (1018)
30 PF13429 TPR_15: Tetratricopep 99.5 5.4E-14 1.2E-18 136.8 11.3 255 204-464 15-276 (280)
31 PRK10747 putative protoheme IX 99.5 2.7E-11 5.9E-16 123.4 29.7 287 109-431 97-390 (398)
32 KOG2002 TPR-containing nuclear 99.5 3.9E-11 8.5E-16 125.0 29.5 278 161-445 447-759 (1018)
33 KOG4422 Uncharacterized conser 99.5 9.2E-10 2E-14 104.8 35.8 396 64-468 117-593 (625)
34 KOG0495 HAT repeat protein [RN 99.5 1E-09 2.3E-14 109.7 37.8 391 77-476 418-855 (913)
35 PF13429 TPR_15: Tetratricopep 99.5 5.4E-13 1.2E-17 129.8 12.5 255 103-361 15-275 (280)
36 TIGR00540 hemY_coli hemY prote 99.5 3.2E-10 6.9E-15 116.3 33.1 290 108-430 96-398 (409)
37 TIGR00540 hemY_coli hemY prote 99.4 1.4E-10 3E-15 118.9 30.4 281 77-396 96-396 (409)
38 KOG0547 Translocase of outer m 99.4 3.1E-10 6.8E-15 109.7 29.8 214 245-464 338-565 (606)
39 KOG1126 DNA-binding cell divis 99.4 2.3E-11 5E-16 122.1 22.9 274 146-466 334-621 (638)
40 KOG0495 HAT repeat protein [RN 99.4 7.1E-09 1.5E-13 103.8 39.7 408 48-476 366-791 (913)
41 PRK10747 putative protoheme IX 99.4 5.2E-10 1.1E-14 114.0 31.8 275 179-464 97-389 (398)
42 KOG1126 DNA-binding cell divis 99.4 2.7E-11 5.9E-16 121.6 20.4 245 212-465 334-586 (638)
43 KOG1915 Cell cycle control pro 99.4 6.8E-09 1.5E-13 100.2 35.5 393 77-475 85-510 (677)
44 KOG1155 Anaphase-promoting com 99.4 9.6E-09 2.1E-13 99.1 33.4 314 140-464 173-494 (559)
45 KOG2076 RNA polymerase III tra 99.3 4.3E-09 9.3E-14 109.4 32.9 315 77-396 151-509 (895)
46 COG2956 Predicted N-acetylgluc 99.3 2.2E-09 4.7E-14 98.8 26.9 267 109-411 48-324 (389)
47 COG3071 HemY Uncharacterized e 99.3 7.7E-09 1.7E-13 98.3 30.2 293 102-430 88-389 (400)
48 KOG2003 TPR repeat-containing 99.3 4.3E-09 9.4E-14 100.8 28.4 386 74-465 209-689 (840)
49 PF13041 PPR_2: PPR repeat fam 99.3 3.3E-12 7.1E-17 87.5 5.3 50 94-143 1-50 (50)
50 KOG1915 Cell cycle control pro 99.3 3.1E-08 6.8E-13 95.7 33.9 416 44-477 89-545 (677)
51 TIGR02521 type_IV_pilW type IV 99.3 7.5E-10 1.6E-14 104.4 23.4 198 266-464 29-231 (234)
52 KOG4318 Bicoid mRNA stability 99.3 8.5E-11 1.8E-15 121.1 17.4 267 218-525 11-278 (1088)
53 KOG1173 Anaphase-promoting com 99.3 1E-08 2.2E-13 101.4 31.1 422 30-464 15-517 (611)
54 KOG1155 Anaphase-promoting com 99.3 9.2E-09 2E-13 99.2 27.9 340 77-432 176-537 (559)
55 COG2956 Predicted N-acetylgluc 99.2 1.1E-08 2.3E-13 94.4 25.9 300 145-486 49-368 (389)
56 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 83.3 6.6 50 195-245 1-50 (50)
57 COG3071 HemY Uncharacterized e 99.2 7.6E-09 1.7E-13 98.3 25.6 248 211-464 98-356 (400)
58 KOG4318 Bicoid mRNA stability 99.2 3.1E-09 6.8E-14 109.9 22.8 393 49-464 11-556 (1088)
59 PRK12370 invasion protein regu 99.2 4.3E-09 9.3E-14 112.2 24.6 260 196-466 255-536 (553)
60 KOG1840 Kinesin light chain [C 99.2 8.4E-09 1.8E-13 105.0 24.7 231 233-463 199-477 (508)
61 KOG0547 Translocase of outer m 99.2 7.1E-08 1.5E-12 93.8 29.4 228 207-446 336-577 (606)
62 KOG1174 Anaphase-promoting com 99.1 1.7E-07 3.7E-12 89.2 28.4 302 129-437 192-506 (564)
63 TIGR02521 type_IV_pilW type IV 99.1 2.1E-08 4.5E-13 94.5 22.6 192 97-293 32-228 (234)
64 KOG1129 TPR repeat-containing 99.1 1.1E-08 2.4E-13 94.2 17.2 230 201-466 227-459 (478)
65 PRK11189 lipoprotein NlpI; Pro 99.0 3.9E-08 8.4E-13 96.0 21.9 211 248-467 41-267 (296)
66 KOG1173 Anaphase-promoting com 99.0 3.3E-07 7.2E-12 91.0 27.7 279 162-445 240-532 (611)
67 PRK12370 invasion protein regu 99.0 1E-07 2.2E-12 101.7 26.6 240 146-396 276-532 (553)
68 KOG4162 Predicted calmodulin-b 99.0 7.2E-07 1.6E-11 91.8 30.3 399 58-466 318-784 (799)
69 KOG1840 Kinesin light chain [C 99.0 1.3E-07 2.8E-12 96.5 21.8 231 200-430 202-478 (508)
70 KOG2047 mRNA splicing factor [ 98.9 2E-05 4.3E-10 79.7 36.2 393 63-463 138-613 (835)
71 KOG2376 Signal recognition par 98.9 1.1E-05 2.3E-10 80.9 33.7 394 44-460 28-515 (652)
72 PRK11189 lipoprotein NlpI; Pro 98.9 4.5E-07 9.8E-12 88.5 23.9 218 212-437 41-271 (296)
73 KOG1174 Anaphase-promoting com 98.9 3.4E-05 7.5E-10 74.0 33.0 295 162-465 190-500 (564)
74 COG3063 PilF Tfp pilus assembl 98.8 3.7E-07 7.9E-12 80.8 17.9 159 304-467 40-204 (250)
75 KOG1156 N-terminal acetyltrans 98.8 8.4E-05 1.8E-09 75.5 36.6 381 76-467 52-470 (700)
76 KOG2047 mRNA splicing factor [ 98.8 7.3E-05 1.6E-09 75.8 35.9 362 81-459 91-534 (835)
77 KOG1129 TPR repeat-containing 98.8 1.8E-07 4E-12 86.4 15.8 220 136-361 228-456 (478)
78 PF12569 NARP1: NMDA receptor- 98.8 2.9E-06 6.3E-11 87.7 26.1 256 174-468 12-294 (517)
79 cd05804 StaR_like StaR_like; a 98.8 1.1E-05 2.4E-10 81.6 30.1 198 269-466 115-337 (355)
80 PF04733 Coatomer_E: Coatomer 98.8 8.7E-07 1.9E-11 85.3 20.0 163 267-436 101-270 (290)
81 KOG3785 Uncharacterized conser 98.8 2.2E-05 4.7E-10 73.8 27.2 375 77-469 69-494 (557)
82 COG3063 PilF Tfp pilus assembl 98.7 4.6E-06 9.9E-11 74.0 21.5 166 267-434 68-239 (250)
83 cd05804 StaR_like StaR_like; a 98.7 4.5E-05 9.7E-10 77.1 31.0 195 98-295 8-213 (355)
84 PRK04841 transcriptional regul 98.7 3E-05 6.5E-10 89.0 31.5 323 143-466 386-761 (903)
85 PF12569 NARP1: NMDA receptor- 98.7 3.4E-05 7.4E-10 80.0 28.5 299 138-463 11-332 (517)
86 KOG4162 Predicted calmodulin-b 98.7 0.00018 4E-09 74.6 33.0 305 161-466 318-750 (799)
87 KOG1070 rRNA processing protei 98.7 2.3E-06 5.1E-11 93.2 20.4 201 265-469 1455-1667(1710)
88 PRK04841 transcriptional regul 98.6 6.5E-05 1.4E-09 86.2 33.9 357 77-434 353-763 (903)
89 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.5E-13 60.1 4.3 33 161-193 2-34 (34)
90 KOG1125 TPR repeat-containing 98.6 9.8E-07 2.1E-11 88.1 15.8 218 244-464 296-526 (579)
91 KOG1156 N-terminal acetyltrans 98.6 0.0004 8.7E-09 70.8 34.0 410 37-463 50-509 (700)
92 PF04733 Coatomer_E: Coatomer 98.6 1.1E-06 2.4E-11 84.6 15.7 149 308-465 111-265 (290)
93 KOG3785 Uncharacterized conser 98.6 2.7E-05 5.8E-10 73.2 22.9 370 77-462 34-454 (557)
94 KOG4340 Uncharacterized conser 98.6 1.4E-05 3E-10 73.3 20.4 373 77-464 22-442 (459)
95 KOG0624 dsRNA-activated protei 98.6 7.4E-05 1.6E-09 70.1 25.2 165 267-436 188-375 (504)
96 KOG3616 Selective LIM binding 98.6 2.6E-05 5.6E-10 79.8 23.9 193 239-460 738-932 (1636)
97 KOG0548 Molecular co-chaperone 98.6 7.7E-05 1.7E-09 74.3 26.7 370 77-466 14-456 (539)
98 KOG4340 Uncharacterized conser 98.5 2.5E-05 5.3E-10 71.7 20.4 289 131-461 10-335 (459)
99 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.9E-12 58.0 4.0 33 263-295 2-34 (34)
100 KOG0985 Vesicle coat protein c 98.5 0.00043 9.3E-09 73.8 31.3 256 180-464 1089-1369(1666)
101 TIGR03302 OM_YfiO outer membra 98.4 2.3E-05 4.9E-10 74.1 18.9 180 266-465 31-232 (235)
102 KOG3616 Selective LIM binding 98.4 0.00014 3.1E-09 74.5 24.4 254 179-466 745-1025(1636)
103 PRK10370 formate-dependent nit 98.4 2.1E-05 4.6E-10 71.5 17.2 118 347-466 52-174 (198)
104 KOG0985 Vesicle coat protein c 98.4 0.00086 1.9E-08 71.6 29.1 248 107-383 1059-1326(1666)
105 KOG2376 Signal recognition par 98.4 0.0014 3.1E-08 66.2 29.4 335 103-460 19-400 (652)
106 TIGR03302 OM_YfiO outer membra 98.3 5E-05 1.1E-09 71.8 18.9 182 231-433 31-234 (235)
107 PRK15359 type III secretion sy 98.3 1.7E-05 3.7E-10 68.2 14.0 121 320-446 14-136 (144)
108 KOG1070 rRNA processing protei 98.3 0.00012 2.6E-09 80.4 23.2 228 231-462 1456-1697(1710)
109 PRK15359 type III secretion sy 98.3 1.6E-05 3.4E-10 68.4 13.5 95 372-466 26-122 (144)
110 KOG3617 WD40 and TPR repeat-co 98.3 0.0017 3.6E-08 68.0 29.7 148 63-223 726-884 (1416)
111 KOG1128 Uncharacterized conser 98.3 5.8E-05 1.2E-09 77.8 19.0 219 263-505 393-613 (777)
112 KOG0624 dsRNA-activated protei 98.3 0.0018 3.9E-08 61.0 26.8 300 77-401 50-373 (504)
113 KOG0548 Molecular co-chaperone 98.3 0.00028 6.1E-09 70.4 22.7 345 104-466 10-422 (539)
114 KOG1128 Uncharacterized conser 98.3 0.00013 2.7E-09 75.3 20.7 216 162-396 394-613 (777)
115 PLN02789 farnesyltranstransfer 98.3 0.00037 8.1E-09 68.2 23.2 177 284-463 88-300 (320)
116 KOG1127 TPR repeat-containing 98.3 0.00018 3.9E-09 76.5 21.8 371 74-461 500-909 (1238)
117 KOG1125 TPR repeat-containing 98.2 8.2E-05 1.8E-09 74.7 18.2 223 206-434 294-530 (579)
118 TIGR00756 PPR pentatricopeptid 98.2 1.9E-06 4E-11 53.7 4.4 35 97-131 1-35 (35)
119 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.2E-11 52.6 4.7 34 300-333 1-34 (35)
120 PRK15179 Vi polysaccharide bio 98.2 0.00014 3E-09 78.5 19.6 139 298-440 85-226 (694)
121 PRK15363 pathogenicity island 98.2 6.1E-05 1.3E-09 63.8 13.4 95 370-464 35-131 (157)
122 PRK10370 formate-dependent nit 98.2 0.00026 5.7E-09 64.3 18.6 154 274-439 22-181 (198)
123 PRK14720 transcript cleavage f 98.2 0.00054 1.2E-08 74.8 23.8 234 133-413 33-268 (906)
124 PLN02789 farnesyltranstransfer 98.1 0.0014 3.1E-08 64.1 23.4 221 207-434 47-305 (320)
125 COG5010 TadD Flp pilus assembl 98.1 0.00038 8.3E-09 63.4 17.5 134 331-466 63-198 (257)
126 PF13812 PPR_3: Pentatricopept 98.1 5.1E-06 1.1E-10 51.3 4.0 33 97-129 2-34 (34)
127 KOG2053 Mitochondrial inherita 98.1 0.028 6E-07 60.1 35.0 379 77-470 55-507 (932)
128 COG5010 TadD Flp pilus assembl 98.1 0.00041 9E-09 63.2 17.1 152 305-459 72-225 (257)
129 TIGR02552 LcrH_SycD type III s 98.0 7.1E-05 1.5E-09 63.7 11.8 97 370-466 17-115 (135)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00035 7.5E-09 69.8 17.2 123 336-463 171-295 (395)
131 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 49.8 4.2 33 300-332 2-34 (34)
132 COG4783 Putative Zn-dependent 98.0 0.00072 1.6E-08 67.0 18.6 118 344-463 316-435 (484)
133 COG4783 Putative Zn-dependent 98.0 0.005 1.1E-07 61.2 24.3 167 77-249 249-424 (484)
134 KOG3617 WD40 and TPR repeat-co 98.0 0.0091 2E-07 62.8 26.5 116 62-193 756-885 (1416)
135 PRK15179 Vi polysaccharide bio 97.9 0.0018 3.9E-08 70.0 21.9 141 196-341 85-229 (694)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00034 7.4E-09 69.8 15.2 125 168-295 171-295 (395)
137 KOG1127 TPR repeat-containing 97.8 0.0034 7.4E-08 67.3 21.6 78 388-466 801-880 (1238)
138 KOG3081 Vesicle coat complex C 97.8 0.015 3.2E-07 53.3 22.5 175 255-436 95-276 (299)
139 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 4.9E-10 47.1 3.4 31 97-127 1-31 (31)
140 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 6.9E-10 46.5 3.6 31 300-330 1-31 (31)
141 cd00189 TPR Tetratricopeptide 97.7 0.0005 1.1E-08 53.6 10.8 93 373-465 3-97 (100)
142 KOG3081 Vesicle coat complex C 97.7 0.004 8.6E-08 56.9 17.1 244 204-464 15-270 (299)
143 TIGR02552 LcrH_SycD type III s 97.7 0.0019 4.1E-08 54.9 14.4 113 321-437 5-120 (135)
144 PF09976 TPR_21: Tetratricopep 97.7 0.0017 3.7E-08 55.9 14.2 114 347-461 24-143 (145)
145 KOG3060 Uncharacterized conser 97.7 0.008 1.7E-07 54.6 18.1 163 271-436 55-225 (289)
146 PF12895 Apc3: Anaphase-promot 97.6 8E-05 1.7E-09 57.3 4.8 78 383-461 2-83 (84)
147 KOG1914 mRNA cleavage and poly 97.6 0.1 2.2E-06 52.9 29.2 337 128-469 17-468 (656)
148 PF09976 TPR_21: Tetratricopep 97.6 0.0035 7.5E-08 54.0 15.0 123 98-223 14-144 (145)
149 PRK14720 transcript cleavage f 97.6 0.0042 9.2E-08 68.0 18.8 211 63-310 31-268 (906)
150 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0012 2.6E-08 54.4 11.9 91 375-465 7-105 (119)
151 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0018 4E-08 53.4 12.8 104 336-439 4-113 (119)
152 KOG1914 mRNA cleavage and poly 97.6 0.11 2.4E-06 52.6 34.3 394 60-462 17-536 (656)
153 PF13414 TPR_11: TPR repeat; P 97.5 0.00033 7.2E-09 51.4 6.7 65 401-465 2-67 (69)
154 PLN03088 SGT1, suppressor of 97.5 0.0017 3.8E-08 65.0 13.4 95 343-439 11-107 (356)
155 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.6E-06 50.6 25.6 84 302-396 180-263 (319)
156 KOG3060 Uncharacterized conser 97.4 0.019 4E-07 52.3 17.3 183 281-467 25-222 (289)
157 PF04840 Vps16_C: Vps16, C-ter 97.4 0.11 2.3E-06 50.9 23.7 108 335-459 178-285 (319)
158 PF13432 TPR_16: Tetratricopep 97.4 0.00055 1.2E-08 49.6 5.9 57 409-465 4-60 (65)
159 PRK02603 photosystem I assembl 97.4 0.0031 6.7E-08 56.1 11.9 93 372-464 37-148 (172)
160 KOG0550 Molecular chaperone (D 97.3 0.0066 1.4E-07 58.9 14.1 156 307-468 177-353 (486)
161 PRK02603 photosystem I assembl 97.3 0.0069 1.5E-07 53.9 13.8 128 300-451 36-166 (172)
162 PF08579 RPM2: Mitochondrial r 97.3 0.0031 6.8E-08 49.7 9.8 79 100-178 29-116 (120)
163 KOG1538 Uncharacterized conser 97.3 0.041 9E-07 56.5 20.0 233 133-431 600-846 (1081)
164 CHL00033 ycf3 photosystem I as 97.3 0.0033 7.2E-08 55.7 11.4 93 370-462 35-139 (168)
165 PF05843 Suf: Suppressor of fo 97.3 0.0098 2.1E-07 57.4 15.2 132 301-435 3-140 (280)
166 PLN03088 SGT1, suppressor of 97.3 0.0053 1.1E-07 61.6 13.6 103 305-412 8-113 (356)
167 PF13432 TPR_16: Tetratricopep 97.2 0.0015 3.3E-08 47.2 7.1 61 376-436 3-65 (65)
168 PRK10153 DNA-binding transcrip 97.2 0.012 2.6E-07 61.7 16.3 63 403-466 421-483 (517)
169 KOG2041 WD40 repeat protein [G 97.2 0.28 6.2E-06 51.1 25.0 124 7-152 643-781 (1189)
170 cd00189 TPR Tetratricopeptide 97.2 0.005 1.1E-07 47.7 10.7 58 303-361 4-61 (100)
171 COG3898 Uncharacterized membra 97.2 0.25 5.3E-06 48.1 26.8 275 179-466 97-393 (531)
172 PF14938 SNAP: Soluble NSF att 97.2 0.023 5E-07 55.1 16.9 114 306-434 101-228 (282)
173 COG4235 Cytochrome c biogenesi 97.2 0.0035 7.7E-08 58.8 10.2 102 367-468 153-259 (287)
174 PF08579 RPM2: Mitochondrial r 97.2 0.0079 1.7E-07 47.5 10.4 79 303-382 29-116 (120)
175 PRK10866 outer membrane biogen 97.2 0.07 1.5E-06 50.2 19.2 173 274-463 38-239 (243)
176 PF14559 TPR_19: Tetratricopep 97.1 0.00079 1.7E-08 49.2 4.8 54 413-466 2-55 (68)
177 KOG0553 TPR repeat-containing 97.1 0.002 4.4E-08 60.0 7.9 113 317-444 76-191 (304)
178 PF13371 TPR_9: Tetratricopept 97.1 0.002 4.4E-08 47.8 6.6 57 410-466 3-59 (73)
179 KOG0553 TPR repeat-containing 97.1 0.0066 1.4E-07 56.7 11.0 99 307-410 89-190 (304)
180 PF06239 ECSIT: Evolutionarily 97.1 0.0035 7.6E-08 55.9 8.6 98 84-181 33-153 (228)
181 COG4700 Uncharacterized protei 97.0 0.16 3.5E-06 44.1 17.7 131 330-463 85-220 (251)
182 PF12895 Apc3: Anaphase-promot 97.0 0.0023 5E-08 49.1 6.4 80 312-395 2-83 (84)
183 PF10037 MRP-S27: Mitochondria 97.0 0.012 2.5E-07 59.4 12.7 115 130-245 65-185 (429)
184 COG4700 Uncharacterized protei 97.0 0.025 5.5E-07 48.9 12.7 109 358-466 77-190 (251)
185 PF10037 MRP-S27: Mitochondria 97.0 0.0059 1.3E-07 61.4 10.4 80 100-179 107-186 (429)
186 PRK15363 pathogenicity island 96.9 0.038 8.3E-07 47.1 13.6 92 200-294 38-129 (157)
187 PRK15331 chaperone protein Sic 96.9 0.0076 1.6E-07 51.5 9.1 86 379-464 46-133 (165)
188 PF05843 Suf: Suppressor of fo 96.9 0.012 2.6E-07 56.8 11.7 129 335-465 2-136 (280)
189 KOG2041 WD40 repeat protein [G 96.8 0.065 1.4E-06 55.6 16.6 28 164-191 690-717 (1189)
190 PF13414 TPR_11: TPR repeat; P 96.8 0.0044 9.6E-08 45.3 6.2 65 369-433 2-69 (69)
191 PRK10153 DNA-binding transcrip 96.8 0.056 1.2E-06 56.8 16.5 141 296-438 334-489 (517)
192 PF06239 ECSIT: Evolutionarily 96.7 0.011 2.3E-07 52.9 9.0 89 296-385 44-153 (228)
193 PF14938 SNAP: Soluble NSF att 96.7 0.11 2.4E-06 50.3 16.8 133 80-225 30-183 (282)
194 PF14559 TPR_19: Tetratricopep 96.7 0.0029 6.3E-08 46.2 4.4 55 347-403 4-59 (68)
195 KOG2280 Vacuolar assembly/sort 96.6 1.2 2.6E-05 47.3 26.1 306 136-459 442-793 (829)
196 PRK10803 tol-pal system protei 96.6 0.019 4.2E-07 54.4 10.9 95 371-465 144-246 (263)
197 PF12688 TPR_5: Tetratrico pep 96.6 0.034 7.3E-07 45.6 10.7 83 379-461 10-100 (120)
198 KOG0550 Molecular chaperone (D 96.6 0.64 1.4E-05 45.7 20.7 85 309-396 259-347 (486)
199 PF13431 TPR_17: Tetratricopep 96.6 0.0018 4E-08 39.5 2.5 32 425-456 2-33 (34)
200 CHL00033 ycf3 photosystem I as 96.6 0.041 8.8E-07 48.7 12.3 81 96-177 35-117 (168)
201 KOG2796 Uncharacterized conser 96.6 0.12 2.7E-06 47.3 14.8 167 169-338 139-323 (366)
202 PF12688 TPR_5: Tetratrico pep 96.5 0.071 1.5E-06 43.7 11.6 104 104-207 9-116 (120)
203 KOG1538 Uncharacterized conser 96.4 0.17 3.6E-06 52.3 16.0 225 74-319 564-824 (1081)
204 PF13371 TPR_9: Tetratricopept 96.3 0.018 3.9E-07 42.6 6.6 62 378-439 3-66 (73)
205 KOG1130 Predicted G-alpha GTPa 96.2 0.029 6.3E-07 54.5 9.1 130 335-464 196-343 (639)
206 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.026 5.6E-07 56.5 9.1 62 370-431 75-141 (453)
207 PRK10866 outer membrane biogen 96.2 1.2 2.6E-05 42.0 20.8 23 203-225 38-60 (243)
208 COG3898 Uncharacterized membra 96.1 1.6 3.5E-05 42.8 27.8 288 98-396 84-389 (531)
209 PF13281 DUF4071: Domain of un 96.0 0.56 1.2E-05 46.5 17.3 72 273-344 146-227 (374)
210 PF13428 TPR_14: Tetratricopep 96.0 0.016 3.4E-07 37.9 4.7 41 404-444 3-43 (44)
211 KOG2280 Vacuolar assembly/sort 96.0 2.8 6.2E-05 44.6 23.5 119 74-193 445-573 (829)
212 KOG2796 Uncharacterized conser 95.9 0.58 1.3E-05 43.1 15.5 231 197-434 69-318 (366)
213 PRK10803 tol-pal system protei 95.9 0.17 3.7E-06 48.1 13.0 101 336-436 145-251 (263)
214 KOG1130 Predicted G-alpha GTPa 95.9 0.057 1.2E-06 52.6 9.4 257 104-361 25-342 (639)
215 PF03704 BTAD: Bacterial trans 95.8 0.055 1.2E-06 46.5 8.4 66 404-469 64-134 (146)
216 PF09205 DUF1955: Domain of un 95.8 0.9 1.9E-05 37.2 14.7 140 310-468 13-152 (161)
217 PF13424 TPR_12: Tetratricopep 95.7 0.014 3.1E-07 43.8 4.0 61 404-464 7-74 (78)
218 PF12921 ATP13: Mitochondrial 95.7 0.12 2.5E-06 42.9 9.5 45 366-410 48-96 (126)
219 PF12921 ATP13: Mitochondrial 95.5 0.14 3E-06 42.5 9.4 98 268-381 2-99 (126)
220 PF13424 TPR_12: Tetratricopep 95.2 0.043 9.2E-07 41.2 5.0 60 372-431 7-75 (78)
221 PF04184 ST7: ST7 protein; In 95.1 0.76 1.6E-05 46.6 14.6 150 311-475 180-334 (539)
222 COG5107 RNA14 Pre-mRNA 3'-end 95.1 4.1 9E-05 40.8 23.6 370 49-434 30-534 (660)
223 KOG1585 Protein required for f 95.0 2.8 6.1E-05 38.4 16.7 84 375-459 155-250 (308)
224 PF13525 YfiO: Outer membrane 95.0 0.94 2E-05 41.4 14.3 48 409-456 148-198 (203)
225 KOG3941 Intermediate in Toll s 94.9 0.13 2.8E-06 47.7 8.0 99 83-181 52-173 (406)
226 PF10300 DUF3808: Protein of u 94.9 5.7 0.00012 41.6 21.4 158 99-260 191-374 (468)
227 COG4235 Cytochrome c biogenesi 94.9 0.38 8.1E-06 45.5 11.3 30 298-327 155-184 (287)
228 PF13525 YfiO: Outer membrane 94.8 3.2 6.9E-05 37.9 18.5 47 341-387 148-195 (203)
229 KOG0543 FKBP-type peptidyl-pro 94.8 0.52 1.1E-05 46.4 12.1 65 402-466 257-321 (397)
230 KOG1920 IkappaB kinase complex 94.7 5.4 0.00012 45.0 20.6 92 275-396 959-1052(1265)
231 COG0457 NrfG FOG: TPR repeat [ 94.5 3.7 8E-05 37.5 26.1 193 269-465 60-265 (291)
232 PF03704 BTAD: Bacterial trans 94.5 0.38 8.3E-06 41.2 9.8 68 304-372 67-138 (146)
233 KOG4555 TPR repeat-containing 94.4 0.56 1.2E-05 38.3 9.4 89 379-467 52-146 (175)
234 PF13281 DUF4071: Domain of un 94.3 3.3 7.2E-05 41.2 16.8 72 171-243 146-227 (374)
235 PRK11619 lytic murein transgly 94.3 9.6 0.00021 41.5 29.9 76 170-248 103-178 (644)
236 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.31 6.7E-06 49.0 9.8 61 333-396 74-138 (453)
237 smart00299 CLH Clathrin heavy 94.2 1.6 3.5E-05 37.0 13.1 86 134-223 10-95 (140)
238 KOG3941 Intermediate in Toll s 94.2 0.31 6.8E-06 45.2 8.7 109 287-396 53-185 (406)
239 KOG2610 Uncharacterized conser 94.2 1.3 2.8E-05 42.4 12.8 112 313-427 117-234 (491)
240 COG1729 Uncharacterized protei 94.1 0.45 9.8E-06 44.4 9.8 91 372-465 144-244 (262)
241 COG3118 Thioredoxin domain-con 94.1 3.3 7.2E-05 39.2 15.3 121 343-466 143-266 (304)
242 PF13512 TPR_18: Tetratricopep 93.9 1.9 4E-05 36.3 12.1 57 381-437 21-82 (142)
243 PRK11906 transcriptional regul 93.8 5.4 0.00012 40.6 17.3 156 300-459 252-430 (458)
244 KOG0543 FKBP-type peptidyl-pro 93.8 1.2 2.6E-05 44.0 12.4 138 306-465 215-355 (397)
245 PRK11906 transcriptional regul 93.8 1.5 3.3E-05 44.3 13.3 118 349-466 273-402 (458)
246 PF07079 DUF1347: Protein of u 93.7 8.6 0.00019 38.7 34.1 406 42-463 20-522 (549)
247 KOG2053 Mitochondrial inherita 93.5 14 0.00031 40.5 37.7 174 45-227 60-256 (932)
248 PF04053 Coatomer_WDAD: Coatom 93.5 2.1 4.6E-05 44.1 14.4 156 104-292 269-426 (443)
249 KOG2114 Vacuolar assembly/sort 93.5 14 0.0003 40.3 23.2 110 105-222 377-488 (933)
250 PF09205 DUF1955: Domain of un 93.5 3 6.5E-05 34.3 12.0 64 200-265 89-152 (161)
251 KOG1920 IkappaB kinase complex 93.4 17 0.00036 41.3 21.2 26 200-225 793-820 (1265)
252 PF04184 ST7: ST7 protein; In 93.2 11 0.00023 38.7 18.0 56 305-360 265-321 (539)
253 COG5107 RNA14 Pre-mRNA 3'-end 93.0 11 0.00024 37.9 29.1 129 335-465 398-531 (660)
254 COG3118 Thioredoxin domain-con 92.7 9.5 0.00021 36.3 15.9 153 307-461 142-298 (304)
255 PF13512 TPR_18: Tetratricopep 92.6 4.9 0.00011 33.8 12.6 51 346-396 22-73 (142)
256 PRK15331 chaperone protein Sic 92.5 1.3 2.8E-05 38.2 9.2 19 207-225 47-65 (165)
257 PF04053 Coatomer_WDAD: Coatom 92.4 2.9 6.2E-05 43.2 13.6 133 308-466 270-403 (443)
258 COG4105 ComL DNA uptake lipopr 92.4 9.4 0.0002 35.6 17.1 135 307-465 42-196 (254)
259 PF00515 TPR_1: Tetratricopept 92.3 0.34 7.3E-06 29.2 4.3 32 403-434 2-33 (34)
260 COG4785 NlpI Lipoprotein NlpI, 92.2 1.3 2.7E-05 39.8 9.1 154 308-467 74-268 (297)
261 PF07719 TPR_2: Tetratricopept 92.2 0.49 1.1E-05 28.4 4.9 32 404-435 3-34 (34)
262 PF07079 DUF1347: Protein of u 92.0 15 0.00033 37.1 26.0 68 76-143 90-179 (549)
263 PF07035 Mic1: Colon cancer-as 91.8 8.1 0.00017 33.7 13.5 133 116-261 14-148 (167)
264 smart00299 CLH Clathrin heavy 91.8 7.2 0.00016 32.9 15.5 115 95-222 6-121 (140)
265 KOG0890 Protein kinase of the 91.7 41 0.00088 41.5 26.0 314 136-467 1388-1733(2382)
266 COG1729 Uncharacterized protei 91.7 2.4 5.1E-05 39.7 10.7 92 302-396 145-241 (262)
267 PF10300 DUF3808: Protein of u 91.6 2.6 5.7E-05 44.0 12.4 130 336-465 190-334 (468)
268 COG0457 NrfG FOG: TPR repeat [ 91.5 11 0.00023 34.3 26.5 197 234-434 60-268 (291)
269 KOG1941 Acetylcholine receptor 91.3 3.2 6.9E-05 40.3 11.3 152 207-358 16-186 (518)
270 KOG4555 TPR repeat-containing 91.0 3.8 8.2E-05 33.6 9.8 89 343-434 52-147 (175)
271 COG4649 Uncharacterized protei 90.8 3.1 6.8E-05 36.0 9.6 119 177-296 69-195 (221)
272 PF02259 FAT: FAT domain; Int 90.4 20 0.00044 35.7 17.6 67 401-467 145-215 (352)
273 KOG2610 Uncharacterized conser 90.2 3.4 7.3E-05 39.7 10.3 115 346-462 115-235 (491)
274 KOG1258 mRNA processing protei 90.2 27 0.00058 36.7 31.8 378 65-451 47-490 (577)
275 KOG2066 Vacuolar assembly/sort 90.1 31 0.00068 37.4 22.4 48 77-124 368-420 (846)
276 COG3629 DnrI DNA-binding trans 90.0 1.7 3.7E-05 41.3 8.4 61 404-464 155-215 (280)
277 PF09613 HrpB1_HrpK: Bacterial 89.9 2.6 5.6E-05 36.2 8.5 49 415-463 23-71 (160)
278 PF13176 TPR_7: Tetratricopept 89.7 0.72 1.6E-05 28.4 3.9 26 438-463 1-26 (36)
279 TIGR02508 type_III_yscG type I 89.5 5.2 0.00011 31.1 8.9 88 146-238 20-107 (115)
280 KOG4234 TPR repeat-containing 89.3 1.5 3.3E-05 38.7 6.9 87 380-466 105-198 (271)
281 PF02259 FAT: FAT domain; Int 89.1 26 0.00056 35.0 18.6 146 299-447 146-303 (352)
282 TIGR02561 HrpB1_HrpK type III 88.7 3.5 7.7E-05 34.8 8.3 52 415-466 23-74 (153)
283 KOG2114 Vacuolar assembly/sort 88.6 42 0.00091 36.8 22.0 140 74-223 376-516 (933)
284 COG3629 DnrI DNA-binding trans 88.6 3.3 7.3E-05 39.4 9.2 76 166-242 153-236 (280)
285 PF13170 DUF4003: Protein of u 88.5 13 0.00027 36.2 13.4 64 112-175 78-150 (297)
286 PRK09687 putative lyase; Provi 88.3 25 0.00055 33.9 26.8 181 163-349 34-221 (280)
287 PF08631 SPO22: Meiosis protei 87.8 27 0.00059 33.6 25.1 17 412-428 256-272 (278)
288 PF13428 TPR_14: Tetratricopep 87.1 2.5 5.4E-05 27.3 5.4 26 99-124 4-29 (44)
289 PF13170 DUF4003: Protein of u 87.0 31 0.00067 33.5 15.2 118 315-434 78-214 (297)
290 PF13176 TPR_7: Tetratricopept 86.7 1.7 3.6E-05 26.7 4.2 28 404-431 1-28 (36)
291 PF13181 TPR_8: Tetratricopept 86.6 1.5 3.2E-05 26.2 4.0 30 404-433 3-32 (34)
292 COG4105 ComL DNA uptake lipopr 86.4 28 0.00062 32.5 19.5 179 266-465 33-233 (254)
293 PF10602 RPN7: 26S proteasome 86.2 6 0.00013 35.1 9.1 63 98-160 38-102 (177)
294 KOG4570 Uncharacterized conser 86.0 3.4 7.5E-05 39.3 7.5 99 58-161 59-165 (418)
295 KOG3364 Membrane protein invol 85.9 5.3 0.00011 33.0 7.6 76 414-515 47-124 (149)
296 PF10602 RPN7: 26S proteasome 85.8 9.5 0.00021 33.8 10.2 57 270-326 38-100 (177)
297 PF09613 HrpB1_HrpK: Bacterial 85.6 23 0.00049 30.6 13.2 89 342-433 18-108 (160)
298 COG3947 Response regulator con 84.9 37 0.00079 32.4 15.9 58 407-464 284-341 (361)
299 PF02284 COX5A: Cytochrome c o 84.4 8.9 0.00019 30.0 7.8 62 316-379 27-88 (108)
300 PF13431 TPR_17: Tetratricopep 84.1 1.9 4.1E-05 26.1 3.4 31 155-186 3-33 (34)
301 PF00637 Clathrin: Region in C 84.0 0.89 1.9E-05 38.8 2.8 84 239-325 13-96 (143)
302 PF00515 TPR_1: Tetratricopept 83.6 2.8 6E-05 25.1 4.2 28 198-225 2-29 (34)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 83.2 12 0.00026 29.0 7.9 63 314-378 22-84 (103)
304 PRK09687 putative lyase; Provi 83.1 46 0.00099 32.1 27.0 234 91-344 32-277 (280)
305 PF00637 Clathrin: Region in C 82.7 0.54 1.2E-05 40.1 0.8 85 137-224 13-97 (143)
306 KOG0276 Vesicle coat complex C 82.5 23 0.0005 37.2 12.1 148 280-461 598-746 (794)
307 TIGR02561 HrpB1_HrpK type III 82.4 17 0.00038 30.8 9.5 46 346-396 22-70 (153)
308 PF14853 Fis1_TPR_C: Fis1 C-te 82.1 9.9 0.00021 25.9 6.6 50 439-514 4-53 (53)
309 PF07721 TPR_4: Tetratricopept 82.1 2.2 4.7E-05 23.9 2.9 24 437-460 2-25 (26)
310 COG1747 Uncharacterized N-term 81.5 70 0.0015 33.1 20.5 158 196-361 65-232 (711)
311 PF07035 Mic1: Colon cancer-as 81.1 37 0.0008 29.7 15.3 39 152-190 15-53 (167)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 80.5 12 0.00026 29.0 7.1 58 114-173 25-83 (103)
313 PF09477 Type_III_YscG: Bacter 80.5 27 0.00058 27.7 9.1 88 145-237 20-107 (116)
314 PF13374 TPR_10: Tetratricopep 80.4 3.4 7.4E-05 25.9 3.9 28 437-464 3-30 (42)
315 KOG4648 Uncharacterized conser 79.3 4.6 0.0001 38.9 5.7 109 342-457 105-216 (536)
316 PF07719 TPR_2: Tetratricopept 78.8 3.7 8E-05 24.4 3.5 29 437-465 2-30 (34)
317 COG4649 Uncharacterized protei 78.7 45 0.00097 29.2 14.0 121 309-430 68-195 (221)
318 PRK15180 Vi polysaccharide bio 78.5 37 0.00081 34.6 11.8 87 380-466 333-421 (831)
319 PF02284 COX5A: Cytochrome c o 78.1 17 0.00036 28.6 7.3 48 396-443 39-86 (108)
320 KOG1586 Protein required for f 77.4 60 0.0013 30.0 13.6 21 414-434 166-186 (288)
321 PF13929 mRNA_stabil: mRNA sta 76.1 35 0.00075 32.6 10.5 64 356-419 188-255 (292)
322 PF11207 DUF2989: Protein of u 76.0 15 0.00032 33.0 7.6 73 214-288 123-198 (203)
323 COG4455 ImpE Protein of avirul 75.8 12 0.00027 33.8 7.0 63 373-435 4-68 (273)
324 PF13181 TPR_8: Tetratricopept 75.0 7.2 0.00016 23.1 4.0 28 437-464 2-29 (34)
325 KOG4648 Uncharacterized conser 74.3 13 0.00027 36.1 7.1 86 306-402 104-198 (536)
326 PRK10941 hypothetical protein; 74.3 30 0.00065 33.0 9.8 63 404-466 183-245 (269)
327 PF04097 Nic96: Nup93/Nic96; 74.3 1.4E+02 0.003 32.7 20.0 56 77-132 123-188 (613)
328 KOG1550 Extracellular protein 73.9 1.3E+02 0.0029 32.3 16.4 50 212-263 308-358 (552)
329 PF13174 TPR_6: Tetratricopept 73.9 7.2 0.00016 22.8 3.8 23 411-433 9-31 (33)
330 PF13174 TPR_6: Tetratricopept 73.6 5.3 0.00011 23.4 3.2 28 438-465 2-29 (33)
331 PHA02875 ankyrin repeat protei 73.6 1.1E+02 0.0025 31.3 17.1 197 120-334 19-230 (413)
332 PF11207 DUF2989: Protein of u 73.4 37 0.00081 30.5 9.5 66 150-216 125-197 (203)
333 KOG4570 Uncharacterized conser 73.0 37 0.0008 32.7 9.7 102 160-263 58-165 (418)
334 PF13374 TPR_10: Tetratricopep 72.8 9.7 0.00021 23.7 4.5 29 403-431 3-31 (42)
335 KOG0403 Neoplastic transformat 72.1 1.2E+02 0.0026 30.9 17.4 60 373-432 512-573 (645)
336 COG4785 NlpI Lipoprotein NlpI, 71.9 80 0.0017 28.8 14.6 62 166-227 99-163 (297)
337 TIGR02508 type_III_yscG type I 71.1 43 0.00094 26.2 8.0 53 275-329 46-98 (115)
338 PF04097 Nic96: Nup93/Nic96; 70.9 51 0.0011 35.9 11.9 61 166-227 112-182 (613)
339 KOG1550 Extracellular protein 70.1 1.6E+02 0.0035 31.7 22.4 224 235-465 290-538 (552)
340 PF13929 mRNA_stabil: mRNA sta 70.1 73 0.0016 30.5 11.1 119 99-220 134-261 (292)
341 smart00028 TPR Tetratricopepti 69.4 10 0.00023 21.1 3.9 29 405-433 4-32 (34)
342 PF14853 Fis1_TPR_C: Fis1 C-te 69.1 9.8 0.00021 25.9 3.9 32 407-438 6-37 (53)
343 PRK13342 recombination factor 67.7 1.3E+02 0.0029 30.9 13.8 47 199-246 229-278 (413)
344 KOG0276 Vesicle coat complex C 66.9 50 0.0011 34.8 9.9 99 77-192 649-747 (794)
345 PF04910 Tcf25: Transcriptiona 66.8 1.4E+02 0.0031 30.0 13.3 64 401-464 99-167 (360)
346 KOG1585 Protein required for f 66.5 1.1E+02 0.0025 28.5 14.5 25 134-158 34-58 (308)
347 KOG1308 Hsp70-interacting prot 66.1 4.4 9.5E-05 39.2 2.3 87 383-469 127-215 (377)
348 KOG1941 Acetylcholine receptor 65.6 1.5E+02 0.0032 29.4 20.8 125 237-361 126-273 (518)
349 PRK15180 Vi polysaccharide bio 65.1 56 0.0012 33.4 9.6 50 345-396 334-383 (831)
350 TIGR03504 FimV_Cterm FimV C-te 64.1 13 0.00028 24.2 3.5 27 440-466 3-29 (44)
351 PF08631 SPO22: Meiosis protei 63.5 1.4E+02 0.0031 28.6 24.5 20 444-463 254-273 (278)
352 PF07163 Pex26: Pex26 protein; 62.9 58 0.0013 30.9 8.8 85 103-189 90-181 (309)
353 PF14561 TPR_20: Tetratricopep 62.0 34 0.00073 26.4 6.2 45 422-466 8-52 (90)
354 PF06552 TOM20_plant: Plant sp 61.8 45 0.00097 29.4 7.4 45 418-462 51-99 (186)
355 cd08819 CARD_MDA5_2 Caspase ac 61.3 64 0.0014 24.6 7.1 65 150-216 21-85 (88)
356 COG1747 Uncharacterized N-term 60.5 2.2E+02 0.0048 29.7 21.5 161 271-438 69-241 (711)
357 PHA02875 ankyrin repeat protei 58.0 1.8E+02 0.0039 29.8 12.9 210 141-370 9-230 (413)
358 KOG0376 Serine-threonine phosp 57.4 23 0.0005 36.1 5.6 84 380-463 14-99 (476)
359 PF11663 Toxin_YhaV: Toxin wit 57.2 15 0.00032 30.5 3.5 32 108-141 107-138 (140)
360 PF06552 TOM20_plant: Plant sp 57.1 55 0.0012 28.9 7.2 45 418-469 96-140 (186)
361 PF10579 Rapsyn_N: Rapsyn N-te 57.1 34 0.00073 25.5 5.0 46 346-391 18-64 (80)
362 KOG1498 26S proteasome regulat 56.9 2.2E+02 0.0048 28.6 15.6 102 375-480 136-256 (439)
363 KOG4077 Cytochrome c oxidase, 56.7 85 0.0019 25.8 7.6 71 317-398 67-137 (149)
364 PF07163 Pex26: Pex26 protein; 56.7 1E+02 0.0023 29.3 9.3 86 204-291 90-181 (309)
365 PF10579 Rapsyn_N: Rapsyn N-te 56.6 36 0.00077 25.4 5.1 47 311-357 18-66 (80)
366 PRK12798 chemotaxis protein; R 56.5 2.3E+02 0.005 28.8 22.1 180 281-463 125-322 (421)
367 KOG4234 TPR repeat-containing 56.3 66 0.0014 28.9 7.5 21 206-226 104-124 (271)
368 COG4455 ImpE Protein of avirul 56.2 65 0.0014 29.4 7.6 76 301-378 3-80 (273)
369 KOG1464 COP9 signalosome, subu 55.7 1.9E+02 0.004 27.4 15.0 268 57-335 20-338 (440)
370 PF06957 COPI_C: Coatomer (COP 55.2 63 0.0014 33.0 8.4 40 396-435 292-333 (422)
371 PF11768 DUF3312: Protein of u 55.0 93 0.002 32.7 9.6 23 273-295 413-435 (545)
372 PF09670 Cas_Cas02710: CRISPR- 54.7 2.5E+02 0.0054 28.5 13.0 53 309-362 141-197 (379)
373 PF11846 DUF3366: Domain of un 54.6 50 0.0011 29.7 7.1 35 399-433 141-175 (193)
374 COG2976 Uncharacterized protei 54.6 1.6E+02 0.0035 26.4 13.9 89 341-434 96-191 (207)
375 KOG0991 Replication factor C, 54.4 1.8E+02 0.0039 27.0 10.1 136 273-434 135-270 (333)
376 TIGR03504 FimV_Cterm FimV C-te 54.4 31 0.00067 22.4 4.0 24 305-328 5-28 (44)
377 smart00386 HAT HAT (Half-A-TPR 54.4 26 0.00057 20.0 3.7 29 416-444 1-29 (33)
378 PF14669 Asp_Glu_race_2: Putat 52.6 1.7E+02 0.0038 26.1 14.3 56 238-293 137-206 (233)
379 PF10366 Vps39_1: Vacuolar sor 52.3 1.2E+02 0.0026 24.3 8.0 40 181-225 28-67 (108)
380 PF13762 MNE1: Mitochondrial s 51.9 1.5E+02 0.0033 25.2 11.6 79 169-248 42-130 (145)
381 PF09986 DUF2225: Uncharacteri 51.2 1E+02 0.0022 28.3 8.5 60 407-466 123-195 (214)
382 COG3947 Response regulator con 51.1 2.4E+02 0.0051 27.2 15.0 58 200-259 282-339 (361)
383 KOG4642 Chaperone-dependent E3 50.9 51 0.0011 30.5 6.2 51 412-462 54-104 (284)
384 KOG0890 Protein kinase of the 50.8 6.3E+02 0.014 32.1 26.9 355 74-443 1391-1796(2382)
385 KOG1464 COP9 signalosome, subu 50.7 2.2E+02 0.0049 26.9 15.1 207 201-415 69-317 (440)
386 PRK11619 lytic murein transgly 50.1 3.9E+02 0.0084 29.5 33.9 94 377-470 414-510 (644)
387 KOG0545 Aryl-hydrocarbon recep 49.8 1.3E+02 0.0028 28.1 8.6 57 410-466 238-294 (329)
388 PF09477 Type_III_YscG: Bacter 49.2 1.3E+02 0.0028 24.0 7.3 76 249-327 22-97 (116)
389 cd08819 CARD_MDA5_2 Caspase ac 48.8 45 0.00097 25.4 4.6 65 47-116 21-86 (88)
390 COG2909 MalT ATP-dependent tra 47.1 4.7E+02 0.01 29.5 22.6 215 244-461 426-684 (894)
391 KOG2066 Vacuolar assembly/sort 47.1 4.4E+02 0.0095 29.2 23.5 127 166-299 392-536 (846)
392 PF11846 DUF3366: Domain of un 46.7 85 0.0019 28.2 7.3 51 346-396 120-170 (193)
393 KOG0292 Vesicle coat complex C 46.3 27 0.00059 38.4 4.4 77 340-432 626-702 (1202)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 46.1 1.5E+02 0.0033 24.4 8.1 42 420-461 81-124 (126)
395 PF11848 DUF3368: Domain of un 45.9 84 0.0018 20.8 5.2 33 310-342 13-45 (48)
396 PF10366 Vps39_1: Vacuolar sor 45.2 1.2E+02 0.0026 24.3 7.0 27 301-327 41-67 (108)
397 KOG3807 Predicted membrane pro 45.0 2.1E+02 0.0046 27.9 9.5 49 308-358 284-335 (556)
398 KOG0687 26S proteasome regulat 44.6 3.2E+02 0.0068 26.8 12.9 24 337-360 107-130 (393)
399 PF14863 Alkyl_sulf_dimr: Alky 44.6 1.3E+02 0.0028 25.5 7.4 64 386-452 57-120 (141)
400 KOG4507 Uncharacterized conser 44.6 1.2E+02 0.0026 32.1 8.4 133 331-466 568-706 (886)
401 PF11848 DUF3368: Domain of un 44.3 63 0.0014 21.4 4.4 29 145-173 16-44 (48)
402 PRK10564 maltose regulon perip 44.2 45 0.00098 32.1 5.1 41 301-341 259-299 (303)
403 TIGR01503 MthylAspMut_E methyl 44.0 1.8E+02 0.0038 30.0 9.3 278 182-509 12-315 (480)
404 PF12862 Apc5: Anaphase-promot 43.4 91 0.002 24.1 6.1 52 413-464 9-69 (94)
405 PRK10564 maltose regulon perip 43.1 43 0.00094 32.2 4.8 38 199-237 259-296 (303)
406 KOG4077 Cytochrome c oxidase, 42.2 1.4E+02 0.003 24.6 6.7 39 396-434 78-116 (149)
407 KOG4507 Uncharacterized conser 40.9 93 0.002 32.8 7.0 99 346-447 619-721 (886)
408 COG2976 Uncharacterized protei 40.6 2.8E+02 0.006 25.0 14.1 124 99-227 57-189 (207)
409 KOG4279 Serine/threonine prote 40.3 2.7E+02 0.0059 30.6 10.3 181 199-434 203-398 (1226)
410 PRK10941 hypothetical protein; 39.7 2.4E+02 0.0051 27.0 9.3 65 374-438 185-251 (269)
411 KOG1586 Protein required for f 39.6 3.2E+02 0.007 25.5 18.0 54 381-434 165-227 (288)
412 COG5159 RPN6 26S proteasome re 39.1 3.6E+02 0.0078 25.9 15.4 49 307-355 11-66 (421)
413 KOG2422 Uncharacterized conser 38.8 2.7E+02 0.0058 29.6 9.8 149 59-207 277-460 (665)
414 PF07575 Nucleopor_Nup85: Nup8 37.9 3E+02 0.0064 29.8 10.9 91 199-294 374-464 (566)
415 PF11663 Toxin_YhaV: Toxin wit 37.4 42 0.00091 27.9 3.3 32 209-243 107-138 (140)
416 PF04190 DUF410: Protein of un 36.8 3.8E+02 0.0082 25.5 17.2 80 266-362 88-169 (260)
417 smart00777 Mad3_BUB1_I Mad3/BU 36.8 1.6E+02 0.0035 24.3 6.6 67 388-460 51-123 (125)
418 COG5159 RPN6 26S proteasome re 36.4 3.6E+02 0.0079 25.9 9.5 132 103-235 10-166 (421)
419 COG5108 RPO41 Mitochondrial DN 36.2 2.4E+02 0.0053 30.4 9.2 47 304-350 33-81 (1117)
420 PRK13800 putative oxidoreducta 36.2 7.4E+02 0.016 28.7 25.6 252 128-404 632-886 (897)
421 KOG0292 Vesicle coat complex C 36.1 5.2E+02 0.011 29.2 11.7 155 47-226 623-782 (1202)
422 PF08967 DUF1884: Domain of un 36.0 30 0.00065 25.6 2.0 30 493-522 5-34 (85)
423 PF14689 SPOB_a: Sensor_kinase 35.5 62 0.0013 22.8 3.6 24 304-327 28-51 (62)
424 cd00280 TRFH Telomeric Repeat 35.3 2.3E+02 0.0049 25.3 7.5 60 350-409 85-150 (200)
425 KOG3824 Huntingtin interacting 35.1 78 0.0017 30.4 5.0 47 413-459 127-173 (472)
426 PF04910 Tcf25: Transcriptiona 34.8 4.9E+02 0.011 26.2 18.0 53 341-396 110-165 (360)
427 PF14561 TPR_20: Tetratricopep 34.7 2.1E+02 0.0046 21.9 8.0 62 401-462 21-85 (90)
428 PF10345 Cohesin_load: Cohesin 34.5 6.5E+02 0.014 27.5 27.8 149 40-192 72-251 (608)
429 KOG0551 Hsp90 co-chaperone CNS 34.3 2.1E+02 0.0046 28.1 7.8 86 377-462 88-179 (390)
430 KOG2300 Uncharacterized conser 34.1 5.7E+02 0.012 26.7 20.5 213 183-395 299-552 (629)
431 PF10255 Paf67: RNA polymerase 33.9 2.2E+02 0.0048 29.0 8.4 58 167-224 123-191 (404)
432 PRK11639 zinc uptake transcrip 33.9 1.9E+02 0.004 25.4 7.1 35 147-181 41-75 (169)
433 PRK13342 recombination factor 33.6 5.5E+02 0.012 26.4 15.3 44 302-345 230-276 (413)
434 PF13762 MNE1: Mitochondrial s 33.4 3E+02 0.0066 23.4 10.9 47 335-382 80-127 (145)
435 PF12862 Apc5: Anaphase-promot 33.3 1.9E+02 0.004 22.3 6.4 25 408-432 47-71 (94)
436 PF11768 DUF3312: Protein of u 33.3 3.7E+02 0.0079 28.5 9.9 23 171-193 413-435 (545)
437 PF14689 SPOB_a: Sensor_kinase 33.2 64 0.0014 22.7 3.3 44 182-225 6-51 (62)
438 smart00804 TAP_C C-terminal do 32.8 38 0.00082 24.0 2.1 25 210-234 38-62 (63)
439 PHA03100 ankyrin repeat protei 32.4 6E+02 0.013 26.5 13.8 20 276-295 255-274 (480)
440 PF07720 TPR_3: Tetratricopept 31.6 1.3E+02 0.0028 18.5 4.4 28 406-433 5-34 (36)
441 COG0735 Fur Fe2+/Zn2+ uptake r 31.5 2.2E+02 0.0049 24.2 7.0 61 120-181 10-70 (145)
442 KOG4814 Uncharacterized conser 31.4 4.2E+02 0.0091 28.7 9.9 83 382-464 366-456 (872)
443 COG5108 RPO41 Mitochondrial DN 30.2 3.3E+02 0.0071 29.5 8.9 73 136-208 33-114 (1117)
444 PF04190 DUF410: Protein of un 29.9 4.9E+02 0.011 24.7 17.3 109 78-197 3-121 (260)
445 PF07064 RIC1: RIC1; InterPro 29.7 4.9E+02 0.011 24.7 15.6 157 97-262 83-249 (258)
446 PF10255 Paf67: RNA polymerase 29.5 1.1E+02 0.0024 31.2 5.4 29 435-463 163-191 (404)
447 PHA03100 ankyrin repeat protei 29.3 6.7E+02 0.015 26.1 15.1 13 455-467 367-379 (480)
448 KOG4642 Chaperone-dependent E3 29.1 4.9E+02 0.011 24.4 9.8 81 278-360 20-104 (284)
449 PF13934 ELYS: Nuclear pore co 29.0 4.7E+02 0.01 24.2 12.9 118 302-426 79-197 (226)
450 COG4976 Predicted methyltransf 28.9 1.2E+02 0.0027 27.9 5.0 57 380-436 5-63 (287)
451 KOG1524 WD40 repeat-containing 28.2 3E+02 0.0065 28.8 8.1 89 369-460 572-668 (737)
452 PF14044 NETI: NETI protein 28.0 43 0.00094 22.9 1.6 17 502-518 10-26 (57)
453 cd08332 CARD_CASP2 Caspase act 27.5 1.6E+02 0.0035 22.6 4.9 58 48-111 23-80 (90)
454 PF10475 DUF2450: Protein of u 27.4 3.1E+02 0.0066 26.6 8.1 54 170-225 102-155 (291)
455 COG5187 RPN7 26S proteasome re 27.2 5.8E+02 0.012 24.7 12.0 27 335-361 116-142 (412)
456 COG4976 Predicted methyltransf 26.9 1E+02 0.0022 28.5 4.2 55 344-401 5-61 (287)
457 PF08311 Mad3_BUB1_I: Mad3/BUB 26.7 3.6E+02 0.0079 22.2 8.3 42 149-190 81-123 (126)
458 KOG4279 Serine/threonine prote 26.5 3.5E+02 0.0076 29.8 8.5 111 301-414 203-335 (1226)
459 COG2178 Predicted RNA-binding 25.9 4E+02 0.0087 24.0 7.5 52 275-326 36-96 (204)
460 cd08326 CARD_CASP9 Caspase act 25.8 1.9E+02 0.0042 21.9 5.0 38 280-317 42-79 (84)
461 KOG4567 GTPase-activating prot 25.7 6.3E+02 0.014 24.7 10.3 72 319-396 263-344 (370)
462 TIGR02270 conserved hypothetic 25.7 7.5E+02 0.016 25.4 26.0 99 103-209 45-143 (410)
463 PF04762 IKI3: IKI3 family; I 25.4 1.1E+03 0.024 27.4 13.6 120 313-462 792-927 (928)
464 PRK13800 putative oxidoreducta 25.2 1.1E+03 0.024 27.3 25.4 256 186-464 624-880 (897)
465 PF07064 RIC1: RIC1; InterPro 25.1 6E+02 0.013 24.2 14.6 155 301-466 84-250 (258)
466 PF11838 ERAP1_C: ERAP1-like C 25.1 6.4E+02 0.014 24.5 18.9 96 350-445 146-245 (324)
467 cd08326 CARD_CASP9 Caspase act 25.0 3.1E+02 0.0067 20.8 6.2 62 151-216 19-80 (84)
468 TIGR02710 CRISPR-associated pr 24.8 7.4E+02 0.016 25.1 13.0 29 308-336 139-167 (380)
469 COG5191 Uncharacterized conser 24.8 1.7E+02 0.0037 28.4 5.4 75 367-441 104-181 (435)
470 KOG0991 Replication factor C, 24.7 5.8E+02 0.013 23.9 10.3 48 287-335 227-274 (333)
471 PF04090 RNA_pol_I_TF: RNA pol 24.4 3.9E+02 0.0084 24.2 7.4 60 404-463 43-103 (199)
472 PF10155 DUF2363: Uncharacteri 24.4 4.1E+02 0.0089 22.0 11.6 112 80-193 4-125 (126)
473 PRK13341 recombination factor 24.2 1E+03 0.023 26.6 16.2 57 208-265 269-330 (725)
474 PF03943 TAP_C: TAP C-terminal 24.1 34 0.00074 23.0 0.6 24 210-233 26-49 (51)
475 cd07153 Fur_like Ferric uptake 24.0 1.8E+02 0.0038 23.4 5.0 46 101-146 5-50 (116)
476 PF04090 RNA_pol_I_TF: RNA pol 23.9 5.5E+02 0.012 23.3 10.4 28 301-328 43-70 (199)
477 KOG0376 Serine-threonine phosp 23.9 1.3E+02 0.0029 30.9 4.9 56 411-466 13-68 (476)
478 KOG1258 mRNA processing protei 23.6 9.3E+02 0.02 25.8 26.2 177 234-416 298-489 (577)
479 PF11525 CopK: Copper resistan 23.6 21 0.00046 25.4 -0.5 23 581-603 8-30 (73)
480 PF15161 Neuropep_like: Neurop 23.3 38 0.00083 22.9 0.7 17 562-579 13-29 (65)
481 COG3867 Arabinogalactan endo-1 23.2 4.8E+02 0.01 25.2 7.9 138 382-527 61-225 (403)
482 PF08424 NRDE-2: NRDE-2, neces 22.2 7.6E+02 0.016 24.3 13.1 138 367-515 16-170 (321)
483 PF15469 Sec5: Exocyst complex 21.9 5.6E+02 0.012 22.6 10.8 22 340-361 92-113 (182)
484 cd04440 DEP_2_P-Rex DEP (Dishe 21.6 45 0.00098 25.8 0.9 39 558-598 47-85 (93)
485 PF07575 Nucleopor_Nup85: Nup8 21.5 4.1E+02 0.0089 28.7 8.5 94 95-192 371-464 (566)
486 TIGR02270 conserved hypothetic 21.5 9E+02 0.019 24.9 25.4 235 138-397 45-279 (410)
487 PF11817 Foie-gras_1: Foie gra 21.3 3.5E+02 0.0075 25.5 7.1 14 409-422 225-238 (247)
488 PRK14956 DNA polymerase III su 21.3 7.6E+02 0.016 26.0 9.8 38 130-167 247-284 (484)
489 KOG2063 Vacuolar assembly/sort 21.2 1.3E+03 0.028 26.5 18.2 206 200-446 507-742 (877)
490 PF06135 DUF965: Bacterial pro 21.0 97 0.0021 23.0 2.4 38 457-502 23-64 (79)
491 PF11838 ERAP1_C: ERAP1-like C 20.9 7.7E+02 0.017 23.9 16.9 80 147-226 146-230 (324)
492 COG0735 Fur Fe2+/Zn2+ uptake r 20.9 5.2E+02 0.011 21.9 7.5 26 202-227 25-50 (145)
493 cd00280 TRFH Telomeric Repeat 20.8 3.1E+02 0.0067 24.5 5.8 29 408-437 117-145 (200)
494 PF09454 Vps23_core: Vps23 cor 20.8 1.9E+02 0.0041 20.7 3.9 45 195-241 6-50 (65)
495 COG2909 MalT ATP-dependent tra 20.8 1.3E+03 0.027 26.3 27.0 307 113-427 298-684 (894)
496 COG2178 Predicted RNA-binding 20.8 6.3E+02 0.014 22.8 9.2 18 447-464 132-149 (204)
497 KOG4521 Nuclear pore complex, 20.6 1.4E+03 0.031 26.9 15.0 18 277-294 929-946 (1480)
498 PRK11639 zinc uptake transcrip 20.5 4.7E+02 0.01 22.9 7.2 44 203-247 31-74 (169)
499 PF12926 MOZART2: Mitotic-spin 20.5 4E+02 0.0086 20.4 6.9 63 230-294 7-69 (88)
500 PF09670 Cas_Cas02710: CRISPR- 20.4 9.1E+02 0.02 24.5 11.8 60 99-160 135-198 (379)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-119 Score=983.71 Aligned_cols=575 Identities=34% Similarity=0.621 Sum_probs=566.9
Q ss_pred cccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHH
Q 007396 27 LRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTL 102 (605)
Q Consensus 27 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~l 102 (605)
..|+..+|..++.+|.+ .+.+.++|..|.+.|+.||+.++|.|+ .+| ++|++++|.++|++|++||.++||++
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li---~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL---LMHVKCGMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH---HHHhcCCCHHHHHHHHhcCCCCCeeeHHHH
Confidence 34678899999999975 678899999999999999999999999 999 99999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.||..+||+||++|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 183 EFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 183 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.| +.||..||++++.+|++.|+++.|.++|..|.+.
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++|+..+|++|+.+|+.+|+++.|+
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999997889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHH
Q 007396 423 IAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMI 502 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 502 (605)
.+++++.+++|++..+|+.|+++|++.|+|++|.++++.|+++|+.+.||+||+++++.+|.|++||..||+.+++++.+
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l 594 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcccCCccccccCchhhhhhhccccchHHHHHHhhhcCCCCCcEEEeecccccCCcchhhHHhhhhhcee
Q 007396 503 HQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYERE 582 (605)
Q Consensus 503 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 582 (605)
+++..+|++.||.||+..+++++++++|+..+.+||||||+|||||++|||.||||+||||+|+|||+++|+||++++|+
T Consensus 595 ~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~ 674 (697)
T PLN03081 595 DELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKRE 674 (697)
T ss_pred HHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCccccCCCCC
Q 007396 583 IIVRDRKRFHRFKDGTCSCRDYW 605 (605)
Q Consensus 583 i~~rd~~~~h~~~~g~csc~~~~ 605 (605)
|||||.+|||||+||+|||+|||
T Consensus 675 i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 675 IVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-114 Score=967.00 Aligned_cols=572 Identities=35% Similarity=0.647 Sum_probs=561.2
Q ss_pred cccccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHH
Q 007396 25 LNLRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFN 100 (605)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~ 100 (605)
.++.|+..+|..++.+|.. .+.++++|..+.+.|+.||..+||.|+ .+| ++|++++|.++|++|..||.++||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li---~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI---QMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH---HHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 3567889999999999975 688999999999999999999999999 999 999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 007396 101 TLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180 (605)
Q Consensus 101 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (605)
+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..+||+||++|+++|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 007396 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLI 260 (605)
Q Consensus 181 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 260 (605)
++++|.++|++|.++|+++||++|.+|+++|+.++|+.+|++|.. + ++||..||+++|.+|++.|+++.++++|..+.
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 5 89999999999999999999999999999999
Q ss_pred HhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007396 261 RNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGV 340 (605)
Q Consensus 261 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (605)
+.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999978999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYE 500 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (605)
|+.+.+++.+++|+++..|+.|+++|++.|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++|++
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCcccCCccccccCchhhhhhhccccchHHHHHHhhhcCCCCCcEEEeecccccCCcchhhHHhhhhhc
Q 007396 501 MIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYE 580 (605)
Q Consensus 501 ~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 580 (605)
.++++..+|++.||.||+..++ +.++++|+..+++||||||+|||||+||+|.||||+||||+|+|||+++|+||++++
T Consensus 756 ~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~ 834 (857)
T PLN03077 756 VLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVR 834 (857)
T ss_pred HHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhC
Confidence 9999999999999999999888 457889999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCccccccCccccCCC
Q 007396 581 REIIVRDRKRFHRFKDGTCSCRD 603 (605)
Q Consensus 581 ~~i~~rd~~~~h~~~~g~csc~~ 603 (605)
|+|||||.+|||||+||+|||+|
T Consensus 835 r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 835 REISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-71 Score=617.36 Aligned_cols=536 Identities=23% Similarity=0.373 Sum_probs=480.2
Q ss_pred cccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHH
Q 007396 27 LRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTL 102 (605)
Q Consensus 27 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~l 102 (605)
++|+..++..++++|.. +..+.++|..+++.|..++..++|+|+ .+| ++|+++.|.++|++|++||+++||+|
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li---~~~~~~g~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML---SMFVRFGELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH---HHHHhCCChHHHHHHHhcCCCCCeeEHHHH
Confidence 45777888999999864 688999999999999999999999999 999 99999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.++|..+++.|+.||..++|+||++|+++|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 183 EFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 183 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
++|.++|++|+++|+++||+||.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|+++.|.++|..+.+.
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+|++.|++++|.++++.+. +.|+.|+..+|+.||++|++.|++++|.++|++|+ +||..+|++++.+|.++|+.++|.
T Consensus 398 a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAE-RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHhccchHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999 57999999999999999999999999999999996 578999999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCc-----------------------------c
Q 007396 423 IAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPG-----------------------------F 473 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------------------------~ 473 (605)
.+|++|.+.-++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.. .
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 99999986555567777766666666666666655555555555543321 1
Q ss_pred ceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcccCCccccccCchhhhhhhc---cccchHHHHHHhhhcC
Q 007396 474 SLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERL---KGHSQKLAIAFALIHL 550 (605)
Q Consensus 474 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~hse~la~~~~~~~~ 550 (605)
+|. .++.|+..|++.+++.+.+ ++|.+.|+.||..++...+..+.+.+.+ ....+.+...+|+.++
T Consensus 556 s~n-------~lI~~~~~~G~~~~A~~lf----~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 556 SWN-------ILLTGYVAHGKGSMAVELF----NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hHH-------HHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 232 3456778899999998766 5688899999999988777666554443 1223334445666655
Q ss_pred CCCCcEEEeecccccCCcchhhHHhhhhhc
Q 007396 551 SQGSPIRIARNLRMCNDCHTYTKLISVIYE 580 (605)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 580 (605)
..... ++++.+..+|+..+|.++|.+|+.
T Consensus 625 ~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~ 653 (857)
T PLN03077 625 LKHYA-CVVDLLGRAGKLTEAYNFINKMPI 653 (857)
T ss_pred hHHHH-HHHHHHHhCCCHHHHHHHHHHCCC
Confidence 54444 689999999999999999999863
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-61 Score=531.94 Aligned_cols=511 Identities=15% Similarity=0.200 Sum_probs=392.5
Q ss_pred cChHHHHHHHHHHHHhCC-CCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHH
Q 007396 42 KNLEEFKKVHAHVLKWGF-FWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLY 119 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 119 (605)
++++.+.+++..|.+.|+ .++...++.++ ..| +.|.+++|.++|+.|+.||..+||.+|.+|++.|++++|.++|
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li---~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFF---KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHH---HHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 677888888888888885 45666777777 888 8888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CC
Q 007396 120 NEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD----QK 195 (605)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~ 195 (605)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .|
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888885 47
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHh--CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNN--EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETS 273 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (605)
|.++||++|.+|++.|++++|.++|++|.. .| +.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|++
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 888888888888888888888888888875 56 788888888888888888888888888888888888888888888
Q ss_pred HHhHHHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL 349 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 349 (605)
+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 8888888888888888888886 457788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007396 350 VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQNDVVWRSLLSASKVHHNLEIGEIAAK 426 (605)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 426 (605)
+++|.++|+.|. +.|+.|+..+|+.||.+|++.|++++|.++|++| ++.||..+|++++.+|.+.|+++.|.++++
T Consensus 700 ~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 700 WKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887 4688888888888888888888888888888887 678888888888888888888888888888
Q ss_pred HHHhhCC-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHH
Q 007396 427 NLFQINS-HHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQM 505 (605)
Q Consensus 427 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 505 (605)
++.+.+. +|..+|..|+.+|. ++++++.++.+.+..-+. +.. +.......+++. +
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----g~~--------------~~~n~w~~~Al~----l 834 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----GRP--------------QIENKWTSWALM----V 834 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----ccc--------------ccccchHHHHHH----H
Confidence 8887763 35677888776643 245555444433332110 000 000112234444 5
Q ss_pred HHHHHHCCcccCCccccccCchhhhhhhccccchHHHHHHhhhcCCCCCcE--EEeecccccCCcchhhHHhhhhhceeE
Q 007396 506 EWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPI--RIARNLRMCNDCHTYTKLISVIYEREI 583 (605)
Q Consensus 506 ~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i 583 (605)
+++|.+.|+.||..++...+....+.+. ....+.+-..+++.+.+++... .+++.+ |..-.+|..++..+..+.|
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHHHHHcCC
Confidence 5778899999998887665522112111 1122334444555555554332 244433 1112478888888887755
Q ss_pred E
Q 007396 584 I 584 (605)
Q Consensus 584 ~ 584 (605)
+
T Consensus 912 ~ 912 (1060)
T PLN03218 912 V 912 (1060)
T ss_pred C
Confidence 4
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-61 Score=528.35 Aligned_cols=437 Identities=19% Similarity=0.268 Sum_probs=407.3
Q ss_pred cChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcC----CCCcccHH
Q 007396 29 LKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQID----EPGAFDFN 100 (605)
Q Consensus 29 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~----~~~~~~~~ 100 (605)
|+..+|..++.+|.+ .+.|.++|..|.+.|+.||..+||.|| ..| ++|++++|.++|++|. .||..+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI---~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI---STCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 677899999999864 789999999999999999999999999 999 9999999999999998 48999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHc
Q 007396 101 TLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFK--VGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 101 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~ 178 (605)
+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 6789999999999999999
Q ss_pred CCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHH
Q 007396 179 CEKVEFASAIFKQMDQ----KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKC 254 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~ 254 (605)
+|++++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.|.+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999985 567899999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999995 68999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----hcC-------------------CHH
Q 007396 331 EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG----RAG-------------------MLG 387 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~ 387 (605)
.||..||+.++.+|++.|++++|.++|+.|. +.|+.||..+|++++.++. +++ ..+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999998 5799999999999997743 222 246
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-CCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 388 EALELIQSM---PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQI-NSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 388 ~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+|..+|++| ++.||..+|+.++.++...+..+.+..+++.+... .+++..+|+.|++.+.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999 89999999999998888888888888888876543 355788999999988432 368999999999
Q ss_pred hCCCCCCCc
Q 007396 464 SKGLNQSPG 472 (605)
Q Consensus 464 ~~~~~~~~~ 472 (605)
+.|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999998653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-60 Score=520.36 Aligned_cols=487 Identities=20% Similarity=0.288 Sum_probs=431.0
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 007396 93 EPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNS 171 (605)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (605)
.++..+|+++|.++.+.|++++|+++|++|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3678899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL 251 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~ 251 (605)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 252 GKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007396 332 PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSA 411 (605)
Q Consensus 332 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a 411 (605)
||..||+.++.+|++.|++++|.+++..|. +.|+.|+..+|+.||++|+++|++++|.++|++|. +||..+|++|+.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 999999999999999999999999999999 57999999999999999999999999999999996 6899999999999
Q ss_pred HHhcCChHHHHHHHHHHHhhC-CCCCchHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCCccceEEECCEEEEEEecC
Q 007396 412 SKVHHNLEIGEIAAKNLFQIN-SHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS-KGLNQSPGFSLVEVARKVYKFVSQD 489 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~ 489 (605)
|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+..... .++.+.
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~~l 472 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIELL 472 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHHHH
Confidence 999999999999999999877 34788999999999999999999999999986 58877543211 234556
Q ss_pred CCCcchHHHHHHHHHHHHHHHHCCcccCCccccccCchhhhhhhccccchHH-HHHHhhhcCCCCCcEEEeecccccCCc
Q 007396 490 RSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKL-AIAFALIHLSQGSPIRIARNLRMCNDC 568 (605)
Q Consensus 490 ~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (605)
...+..+++++.++ +.++.||..++...+..+.+.+.+.. .++. ...+++-+...+..+.+++.+..+|+-
T Consensus 473 ~r~G~~~eA~~~~~-------~~~~~p~~~~~~~Ll~a~~~~g~~~~-a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 473 GREGLLDEAYAMIR-------RAPFKPTVNMWAALLTACRIHKNLEL-GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HhcCCHHHHHHHHH-------HCCCCCCHHHHHHHHHHHHHcCCcHH-HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 67888899887654 45888998776655555544333211 1111 112344443344555677888999999
Q ss_pred chhhHHhhhhhceeEEE-------ecCCccccccCcc
Q 007396 569 HTYTKLISVIYEREIIV-------RDRKRFHRFKDGT 598 (605)
Q Consensus 569 ~~~~~~~s~~~~~~i~~-------rd~~~~h~~~~g~ 598 (605)
.+|.+++..|.++.+-. --.+..|.|--|-
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 99999999999986532 2234556776553
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=3e-31 Score=214.45 Aligned_cols=106 Identities=58% Similarity=0.888 Sum_probs=95.8
Q ss_pred ccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcccCCccccccCchhhh--------hhhccccchHHHH
Q 007396 472 GFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEK--------RERLKGHSQKLAI 543 (605)
Q Consensus 472 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~hse~la~ 543 (605)
|+||+++ |.|++|+.+||+. ++..++...||.|++..+.++++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899877 9999999999998 344566778999999999988877655 5678999999999
Q ss_pred HHhhhcCCCCCcEEEeecc-cccCCcchhhHHhhhhhceeEEEecCCcccccc
Q 007396 544 AFALIHLSQGSPIRIARNL-RMCNDCHTYTKLISVIYEREIIVRDRKRFHRFK 595 (605)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~ 595 (605)
|||++++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.8e-25 Score=250.91 Aligned_cols=412 Identities=11% Similarity=0.030 Sum_probs=288.7
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHH
Q 007396 42 KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALF 117 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 117 (605)
++.+.+..++..+.+. .+.++.+++.+. ..| ..|++++|.+.|+++.+ .+...+..+...+...|++++|.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLG---AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHH---HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344455555544432 223444555555 566 66666666666666533 233445556666666666666666
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---
Q 007396 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--- 194 (605)
Q Consensus 118 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 194 (605)
.|+++.+.+ +.+..++..+...+.+.|+.++|...+..+.+.+. .+...+..++..|.+.|++++|..+++.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 666666543 22445566666666666777777777776666543 2455666677777777777777777776652
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHH
Q 007396 195 KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
.+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++.+.|+++.|..++..+.+.. +.+...+..+
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 345677777777777777777777777776643 3455566667777777777777777777777654 3356677777
Q ss_pred HhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 351 (605)
+..+.+.|++++|.++++.+.+. +...|..+...+...|++++|...|+++... .|+..++..+..++...|+.+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 77777777777777777776532 3456777777788888888888888888774 355566777788888888888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 352 EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQ-QNDVVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 352 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
+|.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|+++ ... ++..++..+...+...|+ .+|+..++++.
T Consensus 754 ~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 88888888874 33456778888888888889999999888887 333 356688888888888888 77999999988
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888888889999999999999999999988664
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.3e-24 Score=248.07 Aligned_cols=419 Identities=12% Similarity=0.006 Sum_probs=361.4
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHh
Q 007396 33 ECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVK 108 (605)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 108 (605)
.+..++...++.+.+.+.+..+++... .+...+..+. .+| ..|++++|.+.|+++.. .+..+++.+...+.+
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLA---RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 344455556778999999999887642 3344555666 888 99999999999999854 456788999999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAI 188 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (605)
.|++++|...|+++.+.+ +.+...+..+...+...|++++|..+++.+.+.. +.+..+|..+...|.+.|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 3456678888999999999999999999998765 44788999999999999999999999
Q ss_pred HHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 007396 189 FKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265 (605)
Q Consensus 189 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 265 (605)
|+++.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..+++.+.+.. +
T Consensus 624 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 998753 356789999999999999999999999998854 5568889999999999999999999999999876 4
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
.+...+..+...|.+.|++++|.+.|+.+. .++..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 567788889999999999999999999876 3445677888999999999999999999998853 4466788888899
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a 421 (605)
|...|+.++|..+|+++.+ ..+++...+..+...+.+.|+ .+|.+.++++ ...|+ ..++..+...+...|++++|
T Consensus 780 ~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999984 335678889999999999999 8899999987 44454 45788888899999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
...++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 857 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 857 LPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999863
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-19 Score=177.76 Aligned_cols=355 Identities=14% Similarity=0.165 Sum_probs=181.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-HHHHHHH
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP-DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLF-VQNSLIN 174 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~ 174 (605)
.+|..+...+-..|++++|+.+|+.|.+. +| ....|..+..++...|+.+.|.+.|...++.. |+.. ..+.+-+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 34555555555555555555555555553 23 23345555555555555555555555555442 2222 2222333
Q ss_pred HHHcCCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChh
Q 007396 175 MYGKCEKVEFASAIFKQMDQ--KS-VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALD 250 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~ 250 (605)
..-..|++.+|...+.+..+ |. .+.|+.|...+-..|+...|+..|++... +.|+ ...|..+...+...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcch
Confidence 34445555555555544432 21 23555555555555555555555555544 2333 345555555555555555
Q ss_pred hHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 251 LGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
.|...+....... +....++..+...|-..|.++-|+..+++..+.+ ...||.|..++-..|+..+|...+.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 5555555554433 2234444455555555555555555555544222 24555555555555555555555555554
Q ss_pred cCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-
Q 007396 328 EGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV- 403 (605)
Q Consensus 328 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 403 (605)
..|+. ...+.|...+...|.+++|..+|.... .+.|. ....+-|...|-+.|++++|...+++. .++|+-.
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 23332 344455555555555555555555444 22333 234455555555555555555555554 4555433
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.++.+...|...|+...|.+.+.+++..+|.-...+..|+.+|-.+|+..+|..-++...+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 5555555555555555555555555555555555555555555555555555555555544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=6.6e-20 Score=179.66 Aligned_cols=383 Identities=14% Similarity=0.137 Sum_probs=325.8
Q ss_pred hccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH-HHH
Q 007396 65 CASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA-LFK 139 (605)
Q Consensus 65 ~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~ 139 (605)
.|+.+. +.+ ..|++++|..++..+.+ ..+..|..+..++...|+.+.|...|.+.++. .|+.+...+ +..
T Consensus 118 ~ysn~a---N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 118 AYSNLA---NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHH---HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 445555 888 89999999999998875 35678999999999999999999999998874 566554333 233
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCChhHH
Q 007396 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A 216 (605)
.....|++++|...+.+.++.... -...|+.|...+-..|++..|...|++...-| ..+|-.|...|-..+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 334569999999999999887532 45778999999999999999999999987644 35888899999999999999
Q ss_pred HHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 217 LKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 217 ~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
+..|.+.... .|+ ...+..+...|-..|.+|.|...+++.++.. +--...|+.|.+++-..|++.+|.+.+++..
T Consensus 272 vs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 272 VSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999998874 554 6788888888899999999999999999876 3357789999999999999999999999876
Q ss_pred C--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-h
Q 007396 296 D--K-CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-V 370 (605)
Q Consensus 296 ~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 370 (605)
. + -..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|...|++.. .+.|+ .
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHH
Confidence 3 2 356788999999999999999999999987 66765 578999999999999999999999987 67887 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
..|+-+...|-..|+.+.|.+.+.+. .+.|.-. ..+.|.+.+...|++.+|+..++..+++.|+-+..|..++..+.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 78999999999999999999999887 7788654 899999999999999999999999999999999999999888877
Q ss_pred cCChhHHHHHHHHH
Q 007396 449 AQRWYDVAKIRTEM 462 (605)
Q Consensus 449 ~g~~~~a~~~~~~m 462 (605)
-.+|.+-.+.+++.
T Consensus 503 vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 503 VCDWTDYDKRMKKL 516 (966)
T ss_pred HhcccchHHHHHHH
Confidence 77777755444444
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=1.7e-17 Score=191.25 Aligned_cols=411 Identities=10% Similarity=0.031 Sum_probs=298.5
Q ss_pred ccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCc---ccHHHH------------
Q 007396 41 CKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGA---FDFNTL------------ 102 (605)
Q Consensus 41 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~---~~~~~l------------ 102 (605)
-++.+.|...+..+++.. +.+...+..+- ..| +.|++++|+..|++..+ |+. ..|..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg---~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALG---QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 345677777777776653 22445555555 677 78888888888877654 321 123222
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++++.... +...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCH
Confidence 234567788888888888887753 223445666677777778888888888888776532 4555666666664 3567
Q ss_pred HHHHHHHHhcCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChh
Q 007396 183 EFASAIFKQMDQKS------------VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALD 250 (605)
Q Consensus 183 ~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~ 250 (605)
++|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 88887777665321 1234456677888999999999999998853 334566778888899999999
Q ss_pred hHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC----e---------eeHHHHHHHHHhcCCHHH
Q 007396 251 LGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC----Q---------LTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~----~---------~~~~~li~~~~~~g~~~~ 317 (605)
+|...++.+.+... .+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 99999999987653 344555556666788999999999999876431 1 012245667889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-
Q 007396 318 ALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM- 396 (605)
Q Consensus 318 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 396 (605)
|..+++. ..++...+..+...+.+.|+.++|...|+...+. -+.+...+..++..|...|++++|++.++..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2344556677888899999999999999999842 2345788899999999999999999999987
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC------chHHHHHHHHHHcCChhHHHHHHHHHHh-CCCC
Q 007396 397 PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP------SDYVLLSNMYARAQRWYDVAKIRTEMAS-KGLN 468 (605)
Q Consensus 397 ~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~ 468 (605)
...|+ ...+..+..++...|+.++|..+++++.+..|+++ ..+..++.++...|++++|.+.+++... .|+.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 44554 44677788889999999999999999998876544 3556678999999999999999998864 3443
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=7.7e-19 Score=180.21 Aligned_cols=288 Identities=11% Similarity=0.095 Sum_probs=184.1
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHCCChh
Q 007396 142 AKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS-------VASWSAIIAAHASNGLWS 214 (605)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~ 214 (605)
...|++++|...+.++++.+. .+..++..+...|.+.|++++|..+++.+.... ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344556666666666655532 234455555555555555555555555544211 123445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 215 ECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 215 ~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
+|+.+|+++.+.. ++ +..+++.++..|.+.|++++|.+.|+.+
T Consensus 125 ~A~~~~~~~l~~~--~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 125 RAEELFLQLVDEG--DF-----------------------------------AEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHcCC--cc-----------------------------------hHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 5555555555432 22 3344445555555555555555555544
Q ss_pred CCCCe--------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 295 ADKCQ--------LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 295 ~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
.+.+. ..|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 32211 123445666677778888888888777642 123446666777778888888888888887732
Q ss_pred CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 367 VPT--VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 367 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
.|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|..+++++.+..|++. .+..++
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 233 356777888888888888888888887 4567766677888888899999999999999888888754 455555
Q ss_pred HHHHH---cCChhHHHHHHHHHHhCCCCCCCc
Q 007396 444 NMYAR---AQRWYDVAKIRTEMASKGLNQSPG 472 (605)
Q Consensus 444 ~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 472 (605)
..+.. .|+.+++..+++.|.++++.++|.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55553 558999999999999988888885
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.2e-18 Score=176.84 Aligned_cols=295 Identities=13% Similarity=0.080 Sum_probs=231.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHc
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECD---LFVQNSLINMYGK 178 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~ 178 (605)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667899999999999999864 23445788888999999999999999999988643322 3568889999999
Q ss_pred CCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHH
Q 007396 179 CEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCT 255 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 255 (605)
.|++++|.++|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+ ..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVE-------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHH--------------------
Confidence 9999999999999975 467789999999999999999999999998754 2221100
Q ss_pred HHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007396 256 HGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP 332 (605)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (605)
....+..+...+.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|.++|+++.+.+...
T Consensus 179 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 179 -----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred -----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 1122345666677777777777777776532 34466777888889999999999999988753222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSA 411 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a 411 (605)
...++..+..+|...|++++|...++.+.. ..|+...+..++..+.+.|++++|..+++++ ...|+...++.++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 245678888899999999999999999874 2577777788999999999999999999876 667999999988887
Q ss_pred HHh---cCChHHHHHHHHHHHhhC
Q 007396 412 SKV---HHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 412 ~~~---~g~~~~a~~~~~~~~~~~ 432 (605)
+.. +|+.+++..+++++.+..
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHH
Confidence 664 568889999888888643
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=5.8e-17 Score=186.78 Aligned_cols=413 Identities=11% Similarity=0.043 Sum_probs=244.8
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhc-cccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCC
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCA-SNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVE 111 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 111 (605)
++..-++.+.|.+.+..+++... ++.... .... .+. ..|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~---~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAP-PELDLAVEYWR---LVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHH---HHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 45556778888888888876542 222211 1111 223 45889999999998875 3 34567788888888999
Q ss_pred chHHHHHHHHHHHCCC------------------C--------------CCcchHH---------------------HHH
Q 007396 112 FEEALFLYNEMFERGV------------------E--------------PDNFTFP---------------------ALF 138 (605)
Q Consensus 112 ~~~A~~l~~~m~~~g~------------------~--------------p~~~t~~---------------------~ll 138 (605)
+++|+..|+++..... . |+...+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999988754321 0 1110000 112
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CC---hhHHHHH----------
Q 007396 139 KACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KS---VASWSAI---------- 203 (605)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~l---------- 203 (605)
.++...|++++|...++++++..+. +..++..|...|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3345668899999999988887543 678888888999999999999999888753 22 1123222
Q ss_pred --HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 204 --IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 204 --i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
...+.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.++.+.+... .+...+..+...|. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-h
Confidence 345678899999999999988754 44566677788888889999999999998887653 23444444444443 2
Q ss_pred CCHHHHHHHHhccCCCC------------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 007396 282 GCLEKGLCLFRMMADKC------------QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAG 348 (605)
Q Consensus 282 g~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 348 (605)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34444544444332110 011223333444455555555555555442 232 223334444455555
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHH--------------------------------------------HHHHHHHHhcC
Q 007396 349 LVNEGLLCFDRMKLEYRIVPTVQHY--------------------------------------------GCVVDLMGRAG 384 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~~~~~--------------------------------------------~~li~~~~~~g 384 (605)
+.++|...|+.+.+... .+...+ ..+...+...|
T Consensus 510 ~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555554442111 011111 12233344455
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 385 MLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 385 ~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.++|.++++.-| ++...+..+...+...|+.++|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 588 ~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 588 KEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555555555322 22334455555666666666666666666666666666666666666666666666666665554
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.4e-17 Score=177.18 Aligned_cols=358 Identities=12% Similarity=0.050 Sum_probs=264.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 007396 100 NTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC 179 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (605)
......+.+.|++++|+..|++.++ +.|+...|..+..++...|++++|...+..+++.... +...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 3445566667777777777777665 3456666666666777777777777777777666432 455666667777777
Q ss_pred CCHHHHHHHHHhcC---------------------------------CCChhHHHHHHH---------------------
Q 007396 180 EKVEFASAIFKQMD---------------------------------QKSVASWSAIIA--------------------- 205 (605)
Q Consensus 180 g~~~~A~~~~~~m~---------------------------------~~~~~~~~~li~--------------------- 205 (605)
|++++|..-|.... ..+..++..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 77777765443211 001111111100
Q ss_pred -----HH----------HHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHH
Q 007396 206 -----AH----------ASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 206 -----~~----------~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 269 (605)
++ ...+++++|++.|++....+...|+ ...+..+...+...|+++.|...++..++.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00 1235788999999999876423443 4567777777889999999999999999875 33466
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHh
Q 007396 270 VETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACS 345 (605)
Q Consensus 270 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 345 (605)
.|..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 788899999999999999999997753 35678999999999999999999999999874 454 456777888899
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-------H-HHHHHHHHHHhcC
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-------V-VWRSLLSASKVHH 416 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~a~~~~g 416 (605)
+.|++++|...|+...+ ..+.+...|..+...+...|++++|.+.|++. .+.|+. . .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999884 23345788999999999999999999999986 444431 1 1222222344469
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 417 NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
++++|+.+++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998889999999999999999999999998764
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.2e-16 Score=172.50 Aligned_cols=350 Identities=10% Similarity=0.011 Sum_probs=276.2
Q ss_pred CCCChHHHHHHHhhcCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 77 HWGSMDYACSIFRQIDE------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
+..+++.-.-.|...++ -+....-.++..+.+.|++++|+.+++........+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 66677776667776665 123334556778889999999999999998874333 33455555666778999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
.+.++.+++..+. +...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 9999999988644 677888899999999999999999998864 356688899999999999999999999887643
Q ss_pred CCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHH
Q 007396 228 CWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSV 304 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~ 304 (605)
+.+...+.. +..+...|++++|...+..+.+....++......+...+.+.|++++|...|++.... +...+..
T Consensus 175 --P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 --PPRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred --CCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 223333333 3447788999999999999887754445555566778899999999999999987633 4567888
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 007396 305 MISGLAMHGQGKE----ALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVD 378 (605)
Q Consensus 305 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 378 (605)
+...|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++... ..| +...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 8999999999986 89999999874 455 45788888899999999999999999884 234 4566777889
Q ss_pred HHHhcCCHHHHHHHHHHC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 379 LMGRAGMLGEALELIQSM-PIQQNDVVW-RSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
.|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++.+..|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999987 456765543 3456678999999999999999999998753
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=3.8e-16 Score=168.99 Aligned_cols=350 Identities=11% Similarity=0.012 Sum_probs=259.7
Q ss_pred Ccc-CCCChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPD-NFTFPALFKACAKLQALKE 149 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 149 (605)
..| +.|+++.|...|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...|..+..++...|++++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 455 77777777777777543 66666777777777777777777777777764 333 3466667777777777777
Q ss_pred HHHHHHHHHHhCC----------------------------CC-chhHHHH-----------------------------
Q 007396 150 GMQIHGHVFKVGF----------------------------EC-DLFVQNS----------------------------- 171 (605)
Q Consensus 150 a~~~~~~~~~~g~----------------------------~~-~~~~~~~----------------------------- 171 (605)
|...+..+...+. .| +...+..
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 7654433322110 00 0000000
Q ss_pred -HHHHH------HcCCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHH
Q 007396 172 -LINMY------GKCEKVEFASAIFKQMDQK------SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESILV 237 (605)
Q Consensus 172 -li~~y------~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~ 237 (605)
++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|+ ...|.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~ 369 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYI 369 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHH
Confidence 01111 1235788999999887632 3457888888999999999999999999874 454 56788
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCC
Q 007396 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQ 314 (605)
Q Consensus 238 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~ 314 (605)
.+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|..+...+.+.|+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 88888999999999999999998875 446788999999999999999999999987643 45667788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--------HHHHHHHHHHHhcCC
Q 007396 315 GKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV--------QHYGCVVDLMGRAGM 385 (605)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~ 385 (605)
+++|+..|++..+. .|+ ...+..+...+...|++++|...|+.... +.|+. ..++.....+...|+
T Consensus 449 ~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 449 IASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999874 444 56788888999999999999999999873 22321 112222334445799
Q ss_pred HHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 386 LGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+++|.+++++. .+.|+. ..+..+...+...|++++|...++++.++.+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99999999986 556654 47888999999999999999999999998765
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=4.1e-16 Score=171.85 Aligned_cols=188 Identities=11% Similarity=0.019 Sum_probs=115.7
Q ss_pred HhcCCHHHHHHHHhccCCCCe--ee--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQ--LT--YSVMISGLAMHGQGKEALSIFSEMLREGLEP---DDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~--~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~ 351 (605)
...|++++|++.|+.+.+.+. .. -..+...|...|++++|+..|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 345666666666666654321 11 1113456666677777777776665432110 1223444455566667777
Q ss_pred HHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 007396 352 EGLLCFDRMKLEYR----------IVPT---VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHH 416 (605)
Q Consensus 352 ~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g 416 (605)
+|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 77777666653210 0122 123455666777777788887777776 3334 3446777777777777
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 417 NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.++|+..++++++++|+++..+..++..+.+.|+|++|.++++.+.+..
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888888888887777777777777777777788888887777776643
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=7.6e-16 Score=166.17 Aligned_cols=327 Identities=9% Similarity=-0.009 Sum_probs=266.2
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 207 (605)
..-...++..+.+.|+++.|..+++..+...+.+ ......++......|++++|...|+++.+ .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3345667778889999999999999999887664 44444555667789999999999999874 3566888899999
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHH
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 287 (605)
.+.|++++|+..|++..... +.+...+..+..++...|+.+.|...+..+......+.. .+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHH
Confidence 99999999999999998843 345667788889999999999999999988877644333 33333 347889999999
Q ss_pred HHHHhccCCCC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHH
Q 007396 288 LCLFRMMADKC----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNE----GLLCFDR 359 (605)
Q Consensus 288 ~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~ 359 (605)
...++.+.+.+ ...+..+...+...|++++|+..++++.+.. ..+...+..+...+...|+.++ |...|+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 99999876442 2334455678899999999999999999753 2245677778889999999986 8999999
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 360 MKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 360 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
... ..| +...+..+...+.+.|++++|...+++. ...|+. ..+..+..++...|++++|...++++.+.+|.++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 883 334 5678899999999999999999999987 455654 4777888899999999999999999999999887
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+..++.++...|++++|.+.+++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 767777889999999999999999987754
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=2.8e-15 Score=165.33 Aligned_cols=396 Identities=8% Similarity=-0.022 Sum_probs=298.6
Q ss_pred hHHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHH
Q 007396 32 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFV 107 (605)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 107 (605)
..++.+..-.++.+.+.+++....... ..+...+..+. ..+ +.|++++|..+|++..+ .+...+..+...+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA---~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVA---VAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567777777888899998988887633 23343456666 788 99999999999999543 34566788889999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHH
Q 007396 108 KEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASA 187 (605)
Q Consensus 108 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 187 (605)
..|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++++..+. +...+..+...+.+.|..+.|.+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999998862 23444 777888888999999999999999998755 66666778888999999999999
Q ss_pred HHHhcCCCChh--------HHHHHHHHHH-----HCCCh---hHHHHHHHHHHhCCCCCCChh-HHH----HHHHHHhcc
Q 007396 188 IFKQMDQKSVA--------SWSAIIAAHA-----SNGLW---SECLKLFGEMNNEKCWRPEES-ILV----SVLSACTHL 246 (605)
Q Consensus 188 ~~~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~g~~~p~~~-t~~----~ll~a~~~~ 246 (605)
.++.... ++. ....++..+. ..+++ ++|++.++.+...-...|+.. .+. ..+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 9998776 211 1222222222 22234 778999999886410233321 211 113455677
Q ss_pred CChhhHHHHHHHHHHhcCC-chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe-------eeHHHHHHHHHhcCCHHHH
Q 007396 247 GALDLGKCTHGSLIRNISA-LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ-------LTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~~~li~~~~~~g~~~~A 318 (605)
|+.++|...|+.+.+.+.+ |+- ....+...|...|++++|+.+|+++.+.+. ..+..+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999987642 322 222357799999999999999998764332 2345566688999999999
Q ss_pred HHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007396 319 LSIFSEMLREG-----------LEPDD---VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384 (605)
Q Consensus 319 ~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 384 (605)
...++++.... -.|+. ..+..+...+...|+.++|.+.++++.. ..+.+...+..+...+...|
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 99999998742 12332 2345566788899999999999999984 33445788899999999999
Q ss_pred CHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 385 MLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 385 ~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
++++|++.+++. ...|+. ..+..+...+...|++++|+.+++++++..|+++.+
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999998 666764 466677778899999999999999999999998754
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=8.9e-15 Score=161.57 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=147.3
Q ss_pred HHhHHHhcCCHHHHHHHHhccCC--CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMAD--KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLV 350 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 350 (605)
+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 34444577888888888876543 233446666677788888888888888887643 433 2333334445566899
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
++|...+++.. ...|+...|..+...+.+.|+.++|.+.+++. ...|+.. .+..+..++...|+.++|+..++++
T Consensus 593 ~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998887 34577888889999999999999999999887 5667554 7777777899999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 429 FQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998754
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.5e-14 Score=156.50 Aligned_cols=416 Identities=9% Similarity=0.010 Sum_probs=267.0
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHH---HHHHhCCCchHHHH
Q 007396 42 KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLI---RGFVKEVEFEEALF 117 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~ 117 (605)
++...|...+.++++......+.++ .++ .++ ..|+.++|+..+++...|+...+..+. ..+...|++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll---~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWL---QIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHH---HHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456666666666655432222333 555 566 667777777777776665444433333 34555577777777
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C
Q 007396 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--K 195 (605)
Q Consensus 118 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~ 195 (605)
+|+++.+... -|...+..++..+...++.++|++.++.+.+. .|+...+-.++..+...++..+|.+.++++.+ |
T Consensus 124 ly~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 7777766531 12344555556666667777777777666655 23344444444444445555557777766653 2
Q ss_pred -ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHH------HHHHHHHh-----ccCCh---hhHHHHHHHHH
Q 007396 196 -SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESIL------VSVLSACT-----HLGAL---DLGKCTHGSLI 260 (605)
Q Consensus 196 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~------~~ll~a~~-----~~~~~---~~a~~~~~~~~ 260 (605)
+...+..+..+..+.|-...|+++..+-... +.+...-. ...+.--. ...++ +.|..-++.+.
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3445566666667777777776665543221 11111111 01110000 01112 22333333333
Q ss_pred Hh-cC-CchHHH-HhH---HHhHHHhcCCHHHHHHHHhccCCCC--ee--eHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 007396 261 RN-IS-ALNVIV-ETS---LIDMYVKCGCLEKGLCLFRMMADKC--QL--TYSVMISGLAMHGQGKEALSIFSEMLREG- 329 (605)
Q Consensus 261 ~~-~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~f~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 329 (605)
.. +. ++.... ..+ .+-++.+.|++.++++.|+.+.... +. +--.+..+|...+++++|+.+|+++....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 31 11 222111 223 3446678899999999999998543 23 44567889999999999999999997643
Q ss_pred ----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHH
Q 007396 330 ----LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYR----------IVPT---VQHYGCVVDLMGRAGMLGEALEL 392 (605)
Q Consensus 330 ----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 392 (605)
..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122333457788999999999999999999985211 0132 23455677888999999999999
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 393 IQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 393 ~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++++ ...| |...+..+...+...|....|+..++.+..++|++..+...++..+.+.|+|.+|.++.+...+..
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9998 3344 666888999999999999999999999999999999999999999999999999999998887654
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=5.9e-13 Score=126.03 Aligned_cols=292 Identities=16% Similarity=0.181 Sum_probs=212.3
Q ss_pred hhHHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-C--------------------------CCChHH
Q 007396 31 EQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-H--------------------------WGSMDY 83 (605)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~--------------------------~g~~~~ 83 (605)
+..+..++.. +.+.++--++..|...|..-++.+--.|+.+...| . .|.+
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v-- 195 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV-- 195 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH--
Confidence 3444444433 45777788899999888776665544443222333 2 2222
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 007396 84 ACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFE 163 (605)
Q Consensus 84 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 163 (605)
|. ++-+...++..+|..||.|+++-...+.|.++|++-.+...+.+..+||.+|.+.+-. .++.+..+|+...+.
T Consensus 196 Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 22 2223333567889999999999999999999999999888899999999999876543 348899999999999
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHH----HHhcC----CCChhHHHHHHHHHHHCCChhH-HHHHHHHHHhC--CC-CCC
Q 007396 164 CDLFVQNSLINMYGKCEKVEFASAI----FKQMD----QKSVASWSAIIAAHASNGLWSE-CLKLFGEMNNE--KC-WRP 231 (605)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~----~~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g~-~~p 231 (605)
||..|+|+++.+.++.|+++.|++. +.+|+ +|...+|..+|..+.+.++..+ |...+.++... |+ ++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999998877654 45554 5788899999999999888755 44445554432 10 333
Q ss_pred ----ChhHHHHHHHHHhccCChhhHHHHHHHHHHhc----CCch---HHHHhHHHhHHHhcCCHHHHHHHHhccCCC---
Q 007396 232 ----EESILVSVLSACTHLGALDLGKCTHGSLIRNI----SALN---VIVETSLIDMYVKCGCLEKGLCLFRMMADK--- 297 (605)
Q Consensus 232 ----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--- 297 (605)
|...|...++.|.+..+.+.|.+++....... +.++ .+-|..+....+.....+.-..+|+.|...
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 55678899999999999999999988776321 2222 344666777788888888888999888643
Q ss_pred -CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 298 -CQLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 298 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+..+-..++.+....|+++-.-++|..|+..|-
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 444555667777778888888888888877663
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=7.2e-13 Score=143.65 Aligned_cols=397 Identities=10% Similarity=-0.007 Sum_probs=291.6
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHh
Q 007396 33 ECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVK 108 (605)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 108 (605)
.+..++...+..+.|.......+ .|++..+..++..+..| ..|+++.|.++|+++.+ | |...+..++..+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 33444445566777777777665 44444444444333678 88999999999999876 3 35557778888999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAI 188 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (605)
.++.++|++.++++... .|+...+..++..+...++..+|.+.++++++..+. +...+..++....+.|-...|.++
T Consensus 149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999875 566666644444444456666699999999999643 778888899999999999999999
Q ss_pred HHhcCCC---ChhHH--HHHHHHHHH---------CCC---hhHHHHHHHHHHhCCCCCCCh-hHH----HHHHHHHhcc
Q 007396 189 FKQMDQK---SVASW--SAIIAAHAS---------NGL---WSECLKLFGEMNNEKCWRPEE-SIL----VSVLSACTHL 246 (605)
Q Consensus 189 ~~~m~~~---~~~~~--~~li~~~~~---------~g~---~~~A~~~~~~m~~~g~~~p~~-~t~----~~ll~a~~~~ 246 (605)
..+-+.- ....| ...+.-.++ ..+ .+.|+.-++.+...-.-.|.. .-| .--+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 8876521 11111 001111111 112 345666666665421012322 222 2346677889
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---------eeeHHHHHHHHHhcCCHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---------QLTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---------~~~~~~li~~~~~~g~~~~ 317 (605)
++..++...++.+...+.+....+-.++.++|...++.++|+.+|+.+...+ ......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 9999999999999998877677888999999999999999999999875322 2224678899999999999
Q ss_pred HHHHHHHHHHcCC-----------CC--CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007396 318 ALSIFSEMLREGL-----------EP--DDV-VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA 383 (605)
Q Consensus 318 A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 383 (605)
|..+++++.+.-. .| |-. .+..+...+...|++.+|++.++.+.. .-+-|......+.+.+...
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 9999999987311 12 222 334456678889999999999999984 3345788899999999999
Q ss_pred CCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 384 GMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 384 g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
|.+.+|++.++.. ...|+.. +......+....+++++|..+.+.+.+..|+++.+
T Consensus 464 g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 9999999999876 4567544 66777888889999999999999999999998754
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.67 E-value=7.2e-13 Score=146.61 Aligned_cols=379 Identities=9% Similarity=0.019 Sum_probs=282.2
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCCcccHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPGAFDFNTLIR--GFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
..+ +.++++.|.++.+. ...+. . ..+. +....+...++...++.|.+.. +-+......+--.....|+.++|
T Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 321 PVLLKEGQYDAAQKLLAT-LPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHHHhccHHHHHHHHhcC-CCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 777 88888888877542 22222 2 2333 2233466777777788887652 11333333333344577899999
Q ss_pred HHHHHHHHHh-C-CCCchhHHHHHHHHHHcCCC---HHHHHHH-------------------------HHhcCC---C--
Q 007396 151 MQIHGHVFKV-G-FECDLFVQNSLINMYGKCEK---VEFASAI-------------------------FKQMDQ---K-- 195 (605)
Q Consensus 151 ~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-------------------------~~~m~~---~-- 195 (605)
.+++...... + -..+....+.|+..|.+.+. ..++..+ +..... .
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 9999988763 1 12355566688888888876 3333322 111111 2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+...|..+..++.. ++.++|+..|.+... ..|+......+..++...|+++.|...++.+.... |+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHH
Confidence 55677888877776 899999998888876 45776655555666678999999999999886653 3344466778
Q ss_pred hHHHhcCCHHHHHHHHhccCCCCeeeHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMADKCQLTYSVMIS---GLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNE 352 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 352 (605)
..+.+.|+.++|.+.|+...+.++..++.... .....|++++|+..+++..+ ..|+...+..+..++.+.|+.++
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887655444443333 33445999999999999987 56788889999999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 353 GLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
|...|++... ..| +...+..+...+...|++++|.+.+++. ...|+ ...+..+..++...|++++|+..+++++
T Consensus 628 A~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999983 345 5677888888999999999999999987 55664 4589999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
+++|++..+.....+...+..+++.|.+-+++....++.
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999988887765554
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=8.5e-13 Score=125.62 Aligned_cols=419 Identities=12% Similarity=0.091 Sum_probs=272.5
Q ss_pred cccccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhc----CCCC-
Q 007396 25 LNLRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQI----DEPG- 95 (605)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~----~~~~- 95 (605)
+++.++...+..+-+.... ..++...+.-+++....|+.-..-. .+.++| +...+..|.+.+.-. |.-+
T Consensus 195 inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm--nigni~~kkr~fskaikfyrmaldqvpsink 272 (840)
T KOG2003|consen 195 INLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM--NIGNIHFKKREFSKAIKFYRMALDQVPSINK 272 (840)
T ss_pred ccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee--eecceeeehhhHHHHHHHHHHHHhhccccch
Confidence 5555555555444444332 3556666777778777776544322 223778 999999999887543 3212
Q ss_pred ---cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--------
Q 007396 96 ---AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFEC-------- 164 (605)
Q Consensus 96 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------- 164 (605)
....|.+.-.+.+.|++++|+.-|+...+. .||-.+-..++-++...|+-++..+.|..|+.....+
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 223455556788999999999999998875 5776654334444445689999999999998754322
Q ss_pred ----chhHHHHHHH-----HHHcCCC--HHHHH----HHHHhcCCCChh---HHH------------------HHHHHHH
Q 007396 165 ----DLFVQNSLIN-----MYGKCEK--VEFAS----AIFKQMDQKSVA---SWS------------------AIIAAHA 208 (605)
Q Consensus 165 ----~~~~~~~li~-----~y~~~g~--~~~A~----~~~~~m~~~~~~---~~~------------------~li~~~~ 208 (605)
+....|..|. -.-+... .+++. ++..-...+|-. -|- .-..-|.
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 2233332221 1111111 11111 111111222211 010 0123467
Q ss_pred HCCChhHHHHHHHHHHhCCCCCCChhHH--HHHHH----------------------------------HHhccCChhhH
Q 007396 209 SNGLWSECLKLFGEMNNEKCWRPEESIL--VSVLS----------------------------------ACTHLGALDLG 252 (605)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~--~~ll~----------------------------------a~~~~~~~~~a 252 (605)
++|+++.|+++++-..... -+.-...- .+++. .....|+++.|
T Consensus 431 k~~d~~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 8899999988888775543 11111100 01111 11124677777
Q ss_pred HHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007396 253 KCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG 329 (605)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (605)
.+.+.+.+...-......|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 77777777655333333333 3445667788888888886654 345555556667777788888888888766542
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHH
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSL 408 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 408 (605)
++-|...+..|...|-+.|+-.+|.+++-.-- .-++.+.++...|..-|....-+++|...|++. -++|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 34455677788888999999999988765443 145567889899999999999999999999998 578999999999
Q ss_pred HHHH-HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 409 LSAS-KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 409 l~a~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
+..| ++.|++..|..+++.+.+.-|.+....-.|+.++...|..
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9876 7789999999999999999999999999999998887753
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=3.1e-11 Score=124.97 Aligned_cols=326 Identities=13% Similarity=0.098 Sum_probs=227.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhc---CCCChhHHHHHHHHHHHCCChhHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQM---DQKSVASWSAIIAAHASNGLWSECLKLFG 221 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (605)
|++++|..++.++++..+. ....|..|...|-..|+.+++...+--. ...|..-|-.+.....+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7777777777777777543 5666777777777777777777655433 34456677777777777777777777777
Q ss_pred HHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHH----hHHHhHHHhcCCHHHHHHHHhccCC-
Q 007396 222 EMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVE----TSLIDMYVKCGCLEKGLCLFRMMAD- 296 (605)
Q Consensus 222 ~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~y~~~g~~~~A~~~f~~m~~- 296 (605)
+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-. -..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 777754 555555555566667777777777777777766543333222 2334556666666777777776543
Q ss_pred -C---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHHHHh
Q 007396 297 -K---CQLTYSVMISGLAMHGQGKEALSIFSEMLREG---------------------------LEPDDVVYVGVLSACS 345 (605)
Q Consensus 297 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~ 345 (605)
. +...+|.++..|.....++.|......+.... +.++... ..+.-+..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 2 23467778888888888888887777776521 1222222 12222344
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVP--TVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
+....+....+..-.. +..+.| +...|.-+.++|...|++.+|..+|..+ +..-+...|--+..+|...|..++
T Consensus 389 ~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 4444455444444444 345333 5678999999999999999999999998 222356799999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccce
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSL 475 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 475 (605)
|.+.+++++...|.+..+-..|...|...|+.++|.+++..+..-+-...+++.|
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999887433222244444
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.4e-11 Score=126.63 Aligned_cols=411 Identities=14% Similarity=0.147 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCC------cccHHHHHHHHHhCCCchHHHH
Q 007396 45 EEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPG------AFDFNTLIRGFVKEVEFEEALF 117 (605)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 117 (605)
..|.++........ ..||.+.|.|. +.| -.|+++.+..+...+...+ ..+|-.+.++|-..|++++|..
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LA---n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLA---NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHH---HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 33444444444332 34667777777 777 8888888888777665422 3347778888888888888888
Q ss_pred HHHHHHHCCCCCCcc--hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC----CHHHHHHHHHh
Q 007396 118 LYNEMFERGVEPDNF--TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE----KVEFASAIFKQ 191 (605)
Q Consensus 118 l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~ 191 (605)
.|.+.... .||.+ .+..+...+.+.|+++.+...|+.+.+..+ .+..+.-.|...|+..+ ..+.|..++.+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 88776654 34443 344566777888888888888888877742 25566666666676654 44555555555
Q ss_pred cCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHH----HhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh--
Q 007396 192 MDQK---SVASWSAIIAAHASNGLWSECLKLFGEM----NNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN-- 262 (605)
Q Consensus 192 m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-- 262 (605)
..++ |...|-.+...+-+..-+.. +.+|... ...+ -.+.....+.+.......|+++.|...|......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 4432 23334333333332222211 3333221 1222 2233334444444444444444444444433322
Q ss_pred -cCCchH------HHHh---------------------------HHHhHHHhc-------CCHHHHHHHHhccC---CCC
Q 007396 263 -ISALNV------IVET---------------------------SLIDMYVKC-------GCLEKGLCLFRMMA---DKC 298 (605)
Q Consensus 263 -~~~~~~------~~~~---------------------------~li~~y~~~-------g~~~~A~~~f~~m~---~~~ 298 (605)
...++. .+-- ..|++|.+. +...+|..++.... ..+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 001111 0011 122222222 34445555555443 223
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcC
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLRE-GLEPDDVVYVGVLSACSH------------AGLVNEGLLCFDRMKLEYR 365 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~ 365 (605)
+..|+.+...+.....+..|.+-|....+. ...+|..+..+|.+.|.. .+..++|.++|.+..+ .
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~ 641 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--N 641 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--c
Confidence 445555555666666666666555444332 123566666666664432 2345667777776663 2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-C-CCCchHHH
Q 007396 366 IVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN-S-HHPSDYVL 441 (605)
Q Consensus 366 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~ 441 (605)
-+.|...-+.+.-.++..|++.+|..+|.+. .......+|-.+..+|...|++..|+++|+...+.. + +++.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3345666666777777788888888888776 122234577777788888888888888888776553 2 35566677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|+.++.+.|+|.+|.+.........
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 7888888888888877776666543
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=5.4e-14 Score=136.84 Aligned_cols=255 Identities=14% Similarity=0.118 Sum_probs=111.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHH-HHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV-LSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 282 (605)
...+.+.|++++|++++++..... .+|+...|-.+ ...+...++.+.|.+.++.+...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 444555666666666664432221 13443333332 23334456666666666666655432 55566667776 6788
Q ss_pred CHHHHHHHHhccC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007396 283 CLEKGLCLFRMMA--DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG-LEPDDVVYVGVLSACSHAGLVNEGLLCFDR 359 (605)
Q Consensus 283 ~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 359 (605)
++++|.+++...- .++...+..++..+.+.++++++..+++++.... ..++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887664 3456677888888999999999999999987533 345666777888889999999999999999
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 360 MKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 360 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
..+ ..| +......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++..+.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 984 345 4778888999999999999988888776 1234556888999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.....++.++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=2.7e-11 Score=123.42 Aligned_cols=287 Identities=12% Similarity=0.026 Sum_probs=170.9
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAI 188 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (605)
.|++++|.+.+....+.+-.| ...|.....+..+.|+++.+.+.+.++.+....+.....-.....+...|+++.|.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 578888887776655432111 1123333344467788888888888887653322222222335677788888888888
Q ss_pred HHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 007396 189 FKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265 (605)
Q Consensus 189 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 265 (605)
++++.+ .+......+...|.+.|++++|.+++..+.+.+ ..++ ..+..+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~-~~~~~l~------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDE-EHRAMLE------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCH-HHHHHHH-------------------------
Confidence 877764 245667777788888888888888888887766 3221 1111000
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
...|..++....+..+.+...++++.++ ..++.....+..++...|+.++|.+++++..+. .||.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 0111122222222333444445555443 224455566666777777777777777776652 3343211 223
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a 421 (605)
+....++.+++.+..+...++ .+-|+..+.++...+.+.|++++|.+.|++. ...|+...+..|...+...|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333447777777777776642 2234455667777777777777777777776 5667777777777777777777777
Q ss_pred HHHHHHHHhh
Q 007396 422 EIAAKNLFQI 431 (605)
Q Consensus 422 ~~~~~~~~~~ 431 (605)
.+.+++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 7777776654
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=3.9e-11 Score=125.04 Aligned_cols=278 Identities=12% Similarity=0.016 Sum_probs=184.9
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------Chh------HHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 161 GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK-------SVA------SWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+-.+.+.+.|.+...+...|++..|...|+..... |.. +--.+...+-..++.+.|.++|......
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 33345555666666666666666666666554321 110 1111233344455666666666666553
Q ss_pred CCCCChh-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC-----CCCeee
Q 007396 228 CWRPEES-ILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA-----DKCQLT 301 (605)
Q Consensus 228 ~~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~~ 301 (605)
.|.-+ .|.-++......+...+|...+..+.... ..++.+++.+.+.|.+...+..|.+-|.... .+|+.+
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 34432 23333322223455666666666666544 4466677778888999888888888666554 224444
Q ss_pred HHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 007396 302 YSVMISGLAM------------HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT 369 (605)
Q Consensus 302 ~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 369 (605)
.-+|.+.|.+ .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+. ..-.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~ 679 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDF 679 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhC
Confidence 4445554432 356789999999988743 235567777888889999999999999999853 2345
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM----PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
..+|--+...|..+|++..|.+.|+.. ..+.+..+...|..++...|.+.+|.+.+..+....|.++..-..++-.
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 567888899999999999999999875 2234677889999999999999999999999999999988755444433
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=9.2e-10 Score=104.77 Aligned_cols=396 Identities=10% Similarity=0.062 Sum_probs=261.5
Q ss_pred hhccccccccCccCCCChHHHHHHHhhcCCCCccc----HHHHHH--HHHhCCCch-HHHHHHHHHHHCC----------
Q 007396 64 FCASNLVATCALSHWGSMDYACSIFRQIDEPGAFD----FNTLIR--GFVKEVEFE-EALFLYNEMFERG---------- 126 (605)
Q Consensus 64 ~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~~~~----~~~li~--~~~~~g~~~-~A~~l~~~m~~~g---------- 126 (605)
.+-|.|+ .+-..|.+.++.-+++.|.+.++.. --.|.. .|-.+.++- .-.+-|-.|...|
T Consensus 117 ~~E~nL~---kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 117 ETENNLL---KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred cchhHHH---HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 3456677 5557889999999999998643221 111111 111111111 1112222222211
Q ss_pred ---------CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----
Q 007396 127 ---------VEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD---- 193 (605)
Q Consensus 127 ---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---- 193 (605)
.+-...||.++|.+.++....+.|.+++++......+.+..++|.+|.+-+-.-+ .+++.+|.
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 2235568999999999999999999999998888778899999999876443333 45555554
Q ss_pred CCChhHHHHHHHHHHHCCChhH----HHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh-HHHHHHHHHH----hcC
Q 007396 194 QKSVASWSAIIAAHASNGLWSE----CLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL-GKCTHGSLIR----NIS 264 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~----~~~ 264 (605)
.||..|+|+++++.++.|+++. |++++.+|++-| +.|...+|..+|.-..+.++..+ +..+...+.. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 6899999999999999997764 567888999999 99999999999998888777643 3444444432 112
Q ss_pred ----CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC-----------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007396 265 ----ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC-----------QLTYSVMISGLAMHGQGKEALSIFSEMLREG 329 (605)
Q Consensus 265 ----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (605)
+.|...+..-++.+.+..+.+-|.++-.-....+ .+-|..+....++....+.-+..|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 3355666777788888889888888876554221 1235567778888888999999999998877
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CH--------HH-----HHHHHH-
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-ML--------GE-----ALELIQ- 394 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~~- 394 (605)
.-|+..+...++.|....+.++-..+++..++ .+|-.-+...-.-+...+++.. +. .. |..+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998888888887 4664444444444444444433 11 11 111111
Q ss_pred ------HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC---CCCCc--hHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 395 ------SM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN---SHHPS--DYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 395 ------~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+| ...-.....+..+-.+.+.|..++|-+++..+.+.+ |..+. +..-|.+.-........|..+++.|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 112223345555556678889999998888886554 32222 2234555555667778888888888
Q ss_pred HhCCCC
Q 007396 463 ASKGLN 468 (605)
Q Consensus 463 ~~~~~~ 468 (605)
...+..
T Consensus 588 ~~~n~~ 593 (625)
T KOG4422|consen 588 SAFNLP 593 (625)
T ss_pred HHcCch
Confidence 766654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=1e-09 Score=109.65 Aligned_cols=391 Identities=12% Similarity=0.075 Sum_probs=296.6
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCcchHHHHHHHHHccCChHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNE----MFERGVEPDNFTFPALFKACAKLQALKE 149 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 149 (605)
+...++.|.+++++..+ .+...|-+....=-.+|+.+....+.++ +...|+..+...|..=..+|-..|.+-.
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 55567777777776654 4566676666666667777777766654 3445777777777777778888888888
Q ss_pred HHHHHHHHHHhCCCCc--hhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 150 GMQIHGHVFKVGFECD--LFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++..
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8888888887776432 35777777888888888888888877664 355677777776667788888899999888
Q ss_pred hCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC--CCCeeeH
Q 007396 225 NEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DKCQLTY 302 (605)
Q Consensus 225 ~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~ 302 (605)
.. .+-....+.....-.-..|+...|+.++..+.+.... +..+|-+-+..-+....++.|..+|.+.. .+....|
T Consensus 578 ~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~ 654 (913)
T KOG0495|consen 578 EQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVW 654 (913)
T ss_pred Hh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhh
Confidence 75 3445555655566667789999999999999987744 78888889999999999999999998776 4455677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 381 (605)
.--+...--.++.++|++++++.++ .-|+- ..|..+...+-+.++++.|...|..-.+ .++-.+..|-.|...=-
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEE 730 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHH
Confidence 7666666778899999999998887 45665 4677777788888999999988876552 34445678888888888
Q ss_pred hcCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC-----------------------
Q 007396 382 RAGMLGEALELIQSMPI-QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP----------------------- 436 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----------------------- 436 (605)
+.|.+-.|..++++... .| +...|-..+..-.++|+.+.|..+..++++..|.+.
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 99999999999998832 34 567999999999999999999999888887666533
Q ss_pred -------chHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 437 -------SDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 437 -------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
......+.++....+++.|.+.|.+..+.+ |+-|-.|.
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa 855 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWA 855 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHH
Confidence 334566777888888999999998888765 44454553
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=5.4e-13 Score=129.78 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=80.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA-LFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
-..+.+.|++++|+++++.-.....+|+...|-. +...+...++.+.|.+.++.+.+.+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3444555666666666644333221233333322 223333455666666666666555433 44455555555 45666
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 007396 182 VEFASAIFKQMDQ--KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 182 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
+++|.++++..-+ ++...+..++..+.+.++++++.+++++.......+++...|......+.+.|+.+.|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666554422 34445555666666666666666666665543312344555555556666666666666666666
Q ss_pred HHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 260 IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 260 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..+. .+.|...
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-ccccccc
Confidence 6654 2245566666777777777766555554433 345566777777777777777777777777663 1225556
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
...+..++...|+.++|.++..+..
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 6667777777777777777766554
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=3.2e-10 Score=116.27 Aligned_cols=290 Identities=10% Similarity=0.011 Sum_probs=145.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 108 KEVEFEEALFLYNEMFERGVEPDNFT-FPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 108 ~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 346666666666555443 233322 22233444555666666666666655432222223333455555666666666
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 007396 187 AIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNI 263 (605)
Q Consensus 187 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 263 (605)
+.++.+.+ .+...+..+...|.+.|++++|.+++..+.+.+ +. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-LF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CC-CHHHHHHHHH----------------------
Confidence 66666543 234455556666666666666666666666554 22 2111110000
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H-
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV--Y- 337 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~- 337 (605)
..+..++..-......+...+.++..+. .++..+..+...+...|+.++|.+++++..+. .||... +
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111111122333334444432 25556666667777777777777777777663 333321 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH--C-CCCCCHHHHHHHHHHHHh
Q 007396 338 VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQS--M-PIQQNDVVWRSLLSASKV 414 (605)
Q Consensus 338 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~a~~~ 414 (605)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122334556666666666553322222213444566666666666666666662 2 445666666666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 007396 415 HHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~ 430 (605)
.|+.++|.+++++.+.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666543
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.4e-10 Score=118.87 Aligned_cols=281 Identities=10% Similarity=0.015 Sum_probs=187.6
Q ss_pred CCCChHHHHHHHhhcCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHccCChHHHH
Q 007396 77 HWGSMDYACSIFRQIDE--PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF--TFPALFKACAKLQALKEGM 151 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 151 (605)
..|+++.|++.+.+..+ |+... +-.......+.|+++.|.+.|.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 68999999999988765 33222 333346677889999999999998765 35553 3333467778899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHH----HHHHHHCCChhHHHHHHHHHH
Q 007396 152 QIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK---SVASWSAI----IAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~ 224 (605)
+.++.+.+..+. +..+...+...|...|++++|.+.++.+.+. +...+..+ ..+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999744 6788899999999999999999999998754 22223211 111122222222233333333
Q ss_pred hCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC--Ceee-
Q 007396 225 NEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK--CQLT- 301 (605)
Q Consensus 225 ~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~- 301 (605)
... |+ ..+.+...+..+...+...|+.++|.+++++..+. |...
T Consensus 253 ~~~---p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 253 KNQ---PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHC---CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 221 10 00124555666666666777777777776665532 2211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007396 302 --YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV---VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCV 376 (605)
Q Consensus 302 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 376 (605)
+..........++.+.+.+.+++..+. .|+.. ...++...|.+.|++++|.++|+... .....|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHH
Confidence 122222233456777888888877763 45544 44567778888999999999998533 23557888888889
Q ss_pred HHHHHhcCCHHHHHHHHHHC
Q 007396 377 VDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m 396 (605)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999888864
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.1e-10 Score=109.73 Aligned_cols=214 Identities=13% Similarity=0.136 Sum_probs=174.4
Q ss_pred ccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHH
Q 007396 245 HLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSI 321 (605)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 321 (605)
-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++..+.|+... ..|+.+|-.-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3577888888899988877543 3337777888999999999999998776 34667888888888888999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCC
Q 007396 322 FSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQ 399 (605)
Q Consensus 322 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 399 (605)
|++.+. +.|+. ..|..+.-+..+.+.++++...|+..++ .++..+++|+.....+...++++.|.+.|+.. .+.
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999987 55644 5777777777789999999999999986 55666899999999999999999999999886 444
Q ss_pred CC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 400 QN---------DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 400 p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|+ ..+-.+++-.-. .+++..|+.+++++.+++|.....|..|+.+-...|+.++|.++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44 223333333323 38999999999999999999999999999999999999999999987653
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2.3e-11 Score=122.14 Aligned_cols=274 Identities=12% Similarity=0.074 Sum_probs=152.1
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHCCChhHHHHH
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ------KSVASWSAIIAAHASNGLWSECLKL 219 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~ 219 (605)
+..+|...|..+... ..-+..+..-+..+|...+++++|+++|+.+.+ .+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777788774443 333447777788888888899999999888764 255667666543221 122333
Q ss_pred HH-HHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC
Q 007396 220 FG-EMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC 298 (605)
Q Consensus 220 ~~-~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 298 (605)
+. .+.... +-. +.+|-++.+.|+-+++.+.|++.|++..+-|
T Consensus 409 Laq~Li~~~--~~s-----------------------------------PesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 409 LAQDLIDTD--PNS-----------------------------------PESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred HHHHHHhhC--CCC-----------------------------------cHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 32 232222 222 3344444444444555555555554444322
Q ss_pred ---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHH
Q 007396 299 ---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHY 373 (605)
Q Consensus 299 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 373 (605)
..+|+.+..-+.....+|.|...|+..+. +.|.. ..|..+...|.+.+.++.|+-.|+.+. .+.|. ....
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~ 526 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVIL 526 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHH
Confidence 23444444444455555555555555442 23322 234444455556666666666665554 33342 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
.++...+-+.|+.++|++++++. -..| |+..--.....+...++.++|...++++.+.-|++...|..++.+|-+.|+
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 44555556666666666666665 2222 222222233344556667777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHhCC
Q 007396 452 WYDVAKIRTEMASKG 466 (605)
Q Consensus 452 ~~~a~~~~~~m~~~~ 466 (605)
.+.|..-|.-+.+.+
T Consensus 607 ~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 607 TDLALLHFSWALDLD 621 (638)
T ss_pred chHHHHhhHHHhcCC
Confidence 777777776666544
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.44 E-value=7.1e-09 Score=103.84 Aligned_cols=408 Identities=10% Similarity=0.001 Sum_probs=313.8
Q ss_pred HHHHHHHHHhCCCCchhhccccccccCccCCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 48 KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
+.|+...++. ++.++.+|-+.+ .....++|+.++.+..+ | +...|. +|++..-++.|..+++..++
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV------elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV------ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH------hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 344566666666 34466678888877665 3 333444 45556668889999999887
Q ss_pred CCCCCCcchHHHHHHHHHccCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----C
Q 007396 125 RGVEPDNFTFPALFKACAKLQALKEGMQIHGHVF----KVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-----K 195 (605)
Q Consensus 125 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~ 195 (605)
. ++-+...|.+....=-..|+.+....+.++-+ ..|+..+..-|-.=...+-+.|..--+..+...... .
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 5 67778888777776677888888888877654 457777777777777777777887777777766542 1
Q ss_pred -ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHH
Q 007396 196 -SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 196 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
--.+|+.-...|.+.+.++-|..+|....+. ++-+...|......=-..|..+.-..+++.++..- +.....|-..
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ 590 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMY 590 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHH
Confidence 2358999999999999999999999998874 34566677777776677889999999999998765 3455667677
Q ss_pred HhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 351 (605)
..-+-..|++..|..++...-+. +...|-+-+.....+.++++|..+|.+... ..|+...|.--+..--..++++
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHH
Confidence 77788899999999998877533 456788888889999999999999999886 5667776666666556679999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 352 EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 352 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
+|.+++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..- ..-|+. ..|-.|...--+.|++..|..++++..
T Consensus 669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999999998853 3333567888888999999999999988765 444654 488888888888999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
-.+|.+...|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 9999999999999999999999999999888877643 55565664
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=5.2e-10 Score=114.05 Aligned_cols=275 Identities=8% Similarity=0.022 Sum_probs=201.3
Q ss_pred CCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHH--HHHHHHhccCChhhHH
Q 007396 179 CEKVEFASAIFKQMDQK--SVA-SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILV--SVLSACTHLGALDLGK 253 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~--~ll~a~~~~~~~~~a~ 253 (605)
.|+++.|++.+...++. +.. .|-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 68888888877766543 222 332233444778888888888888876 345554333 2345667788888888
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee-----------eHHHHHHHHHhcCCHHHHHHHH
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL-----------TYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~ 322 (605)
..++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.... .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888776 446778888888888999999999888887754322 3334444444455566667777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC
Q 007396 323 SEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN 401 (605)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 401 (605)
+.+-+. .+.+......+..++...|+.++|...++...+ ..|+.... ++.+....|+.+++.+.+++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 766432 345667888899999999999999999998874 34554322 233334569999999999887 55665
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 402 DV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 402 ~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.. .+..+...|...+++++|.+.|+++.+..|+ ...|..|..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55 6778888999999999999999999999997 45678999999999999999999987754
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.7e-11 Score=121.63 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=192.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcC--CchHHHHhHHHhHHHhcCCHHHHHH
Q 007396 212 LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS--ALNVIVETSLIDMYVKCGCLEKGLC 289 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~ 289 (605)
+.++|+..|...... +.-+.....-+..+|...+++++++.+|+.+.+... -.+..+|++.+--+-+.=.+.---+
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 467888888884443 344456666778888888888888888888886542 2256667766654433222211111
Q ss_pred HHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 007396 290 LFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 290 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
-+-.+....+.+|.++.++|..+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 12222344578999999999999999999999999987 667 56788888888888999999999999876 36
Q ss_pred ChHHHHHH---HHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 369 TVQHYGCV---VDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 369 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
++.+|++. .-.|.+.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|+++++++..++|.|+-.-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 77777764 55689999999999999998 78885 456677777889999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 007396 444 NMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
..+...+++++|.+.++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=6.8e-09 Score=100.18 Aligned_cols=393 Identities=10% Similarity=0.018 Sum_probs=291.2
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI 153 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (605)
..+++..|+.+|++... ++...|-.-+..=.++.....|..++++....=...|..=|. -+-.=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHH
Confidence 67788889999999765 677778888888899999999999999988753333433222 22233456999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhC-CCCC
Q 007396 154 HGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD--QKSVASWSAIIAAHASNGLWSECLKLFGEMNNE-KCWR 230 (605)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~ 230 (605)
|+.-.+. .|+...|++.|+.=.+-..++.|+.++++.. .|++.+|--...-=.++|+...|..+|....+. |.-.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9988766 7999999999999999999999999999865 689999988888888999999999999987763 1001
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-hHHHHhHHHhHHHhcCCHHHHHHHH--------hccCCCC---
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL-NVIVETSLIDMYVKCGCLEKGLCLF--------RMMADKC--- 298 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~f--------~~m~~~~--- 298 (605)
-+...|++...-=.+...++.|+-++...++.-+.. ....|..+...--+.|+......+. +.+...|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 122334444333355678899999999988764322 2556666666666777766555443 2333333
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccCCHHHHHHHHHHhHHhcCCCC
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-------VVYVGVLSAC---SHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++|+...+ -++-
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 456666777777789999999999999874 55532 1222221222 256889999999988873 3333
Q ss_pred ChHHHHHHHHHH----HhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 369 TVQHYGCVVDLM----GRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 369 ~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
...|+.-+=-+| .++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|.+-.++.-.+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 455665554444 4678899999999776 77888889999999888999999999999999999999888888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCCccce
Q 007396 444 NMYARAQRWYDVAKIRTEMASKGLNQSPGFSL 475 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 475 (605)
..-...|++|.|..+|+...+...--.|..-|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 88888999999999999888755433343333
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=9.6e-09 Score=99.07 Aligned_cols=314 Identities=11% Similarity=0.080 Sum_probs=217.6
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh-HHHHHHHHHHHCCChhHHHH
Q 007396 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA-SWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~ 218 (605)
..-..|....|...+...+.. -+..|.+-+....-.-+.+.+..+....+..+.. .=--+..+|-.....++++.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777766665533 2234444444433344555555554444432211 11123344555557777877
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcC--CchHHHHhHHHhHHHhcCCHHH-HHHHHhccC
Q 007396 219 LFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS--ALNVIVETSLIDMYVKCGCLEK-GLCLFRMMA 295 (605)
Q Consensus 219 ~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~-A~~~f~~m~ 295 (605)
=.+.....| ++-+...-+-...+.-...++++|..+|+.+.+..+ -.|..+|+.++-.--.+.++.- |..+++ +.
T Consensus 249 k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-id 326 (559)
T KOG1155|consen 249 KKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID 326 (559)
T ss_pred HHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc
Confidence 777777777 444443333333444567788999999999888742 1245666655533322222221 222222 22
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHH
Q 007396 296 DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHY 373 (605)
Q Consensus 296 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 373 (605)
+--+.|...+.+-|...++.++|...|++..+ +.|.. ..|+.+..-|....+...|.+-++... .+.| |-..|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAW 401 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAW 401 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHH
Confidence 22345666677778888999999999999987 45554 567777778999999999999999988 3334 66788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|+..|.++...+..+...|+.|++.|.+.++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 89999999999999999999998 6677 566999999999999999999999999999988788999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 007396 452 WYDVAKIRTEMAS 464 (605)
Q Consensus 452 ~~~a~~~~~~m~~ 464 (605)
.++|.+.+++..+
T Consensus 482 ~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 482 LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.35 E-value=4.3e-09 Score=109.44 Aligned_cols=315 Identities=13% Similarity=0.081 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI 153 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (605)
..|++++|.+++.++.. ++...|.+|...|-+.|+.++++..+-..-..+ +-|...|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34666666666666544 344556666666666666666655543332221 12334555555555566666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh----h----HHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 154 HGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV----A----SWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
|.++++..+. +....-.-+.+|-+.|+...|..-|.++-+.+. . .--.++..|...++.+.|.+.++....
T Consensus 230 y~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6666666533 333333345566666666666665555543221 1 111223344445555555555555544
Q ss_pred CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh---------------------------cCCchHHH-HhHHHhH
Q 007396 226 EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN---------------------------ISALNVIV-ETSLIDM 277 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~li~~ 277 (605)
.+.-..+..+++.++..+.+...++.+.......... +..++..+ ...+--.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2212333344444455555555555544444333331 11112222 1111111
Q ss_pred HHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 353 (605)
..+.+...+++..|-.-. ..++..|.-+..+|.+.|++.+|+.+|..+...-.--+...|..+..+|...|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 122222333332221111 1122344445555555555555555555555433223334555555555555555555
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 354 LLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
.+.|+.... ..| +...--.|...+-+.|+.++|.+.+..+
T Consensus 469 ~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 469 IEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 555555542 122 2233334444555555555555555554
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.2e-09 Score=98.84 Aligned_cols=267 Identities=12% Similarity=0.078 Sum_probs=165.4
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCCCHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECD---LFVQNSLINMYGKCEKVEFA 185 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A 185 (605)
+.++++|+++|-+|.+.. +-...+..++.+.|.+.|..+.|..+|+.+.++.--+. ....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998742 22333566778888899999999999999887632111 23445567778899999999
Q ss_pred HHHHHhcCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 186 SAIFKQMDQKS---VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 186 ~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+ -.+..+- |
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~e----I---------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVE----I---------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhH----H----------------------
Confidence 99999988643 3466778899999999999999999888765 2332211 1
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVG 339 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (605)
...|--|...+....+++.|..++.+..+.| +..=-.+...+...|+++.|.+.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1112223333333445555555555544322 22222344456667777777777777766543333345566
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQ-SMPIQQNDVVWRSLLSA 411 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~a 411 (605)
|..+|.+.|+.+++..++..+.+. .++...-..+.+......-.+.|...+. .+.-+|+...+..|+..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 667777777777777777766632 2333333444444444444455554443 33556666665555544
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=7.7e-09 Score=98.25 Aligned_cols=293 Identities=14% Similarity=0.092 Sum_probs=198.9
Q ss_pred HHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 007396 102 LIRGFVK--EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC 179 (605)
Q Consensus 102 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (605)
+..++.+ .|++.+|..+..+-.+.+-.| ...|.....+.-..||.+.+-+++.++.+....++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444433 589999999998877766443 2346666677778899999999999998886677788888888888899
Q ss_pred CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHH
Q 007396 180 EKVEFASAIFKQMD---QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 180 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
|+++.|+.-++++. .++.........+|.+.|++.....++..|.+.| +--|+..- +
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~l~~~e~~-----------------~-- 226 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-LLSDEEAA-----------------R-- 226 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-CCChHHHH-----------------H--
Confidence 99999988777654 4677888889999999999999999999999888 44443210 0
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD 333 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (605)
....+|+.+++=....+..+.-...+++.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|.
T Consensus 227 ---------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 227 ---------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ---------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 012233334433333333333344455544 23455555666667777788888888777777766665
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSAS 412 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~ 412 (605)
- ..+-.+.+.++.+.-.+..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +.+|+...|+-+..++
T Consensus 298 L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 298 L----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred H----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 2 222345566666666666666655444444 55666777777777777777777765 6667777777777777
Q ss_pred HhcCChHHHHHHHHHHHh
Q 007396 413 KVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~ 430 (605)
.+.|+.++|.+..++.+.
T Consensus 372 ~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 372 DQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 777777777777776653
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=4.3e-09 Score=100.80 Aligned_cols=386 Identities=10% Similarity=0.020 Sum_probs=249.8
Q ss_pred Ccc-CCCChHHHHHHHhhcCC----CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcch----HHHHHHHHHc
Q 007396 74 ALS-HWGSMDYACSIFRQIDE----PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFT----FPALFKACAK 143 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~ 143 (605)
.-| ......+|+..++-+.+ ||.-. --.+...+.+...+.+|+..|+-.+..-...+..+ .+.+.-.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 777 77777888888876654 33222 22344567778889999999987766422222222 3333345678
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC----------------CChhHHHH-----
Q 007396 144 LQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ----------------KSVASWSA----- 202 (605)
Q Consensus 144 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~~~~~~~~----- 202 (605)
.|+++.|...|++..+. .|+..+.-.|+-++.--|+-++..+.|..|.. |+....|.
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 89999999999999877 47777766777788888999999999988752 22222222
Q ss_pred HHHHHHHCC--ChhHHHHHHHHHHhCCCCCCChhH-H------------H--------HHHHHHhccCChhhHHHHHHHH
Q 007396 203 IIAAHASNG--LWSECLKLFGEMNNEKCWRPEESI-L------------V--------SVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 203 li~~~~~~g--~~~~A~~~~~~m~~~g~~~p~~~t-~------------~--------~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
++.-+-+.. +.++++-.-.++..-- +.||-.. + . .-...+.+.|+++.|.+++...
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 222222222 1223332222222222 3333210 0 0 0112356789999999988877
Q ss_pred HHhcCCchHHHHhHHHhHH------------------------------------HhcCCHHHHHHHHhccCCCCeeeHH
Q 007396 260 IRNISALNVIVETSLIDMY------------------------------------VKCGCLEKGLCLFRMMADKCQLTYS 303 (605)
Q Consensus 260 ~~~~~~~~~~~~~~li~~y------------------------------------~~~g~~~~A~~~f~~m~~~~~~~~~ 303 (605)
.+..-..-....|.|--.+ ...|++++|.+.|++....|...-.
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 6553322222222221111 2346778888888877776654433
Q ss_pred HHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007396 304 VMI---SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380 (605)
Q Consensus 304 ~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 380 (605)
+|. -.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|.+++-+... -++.|+...+-|.++|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 332 2466778899999988877642 233555666777888888888999988877652 4455788999999999
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
-+.|+-..|.+..-.- ..-| +..+..-|..-|....-++.++..|++..-+.|+...--..+...+-+.|++..|..+
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998876443 3333 4556666667778888899999999999888886443334445566788999999999
Q ss_pred HHHHHhC
Q 007396 459 RTEMASK 465 (605)
Q Consensus 459 ~~~m~~~ 465 (605)
++....+
T Consensus 683 yk~~hrk 689 (840)
T KOG2003|consen 683 YKDIHRK 689 (840)
T ss_pred HHHHHHh
Confidence 9988654
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=3.3e-12 Score=87.52 Aligned_cols=50 Identities=44% Similarity=0.808 Sum_probs=46.0
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc
Q 007396 94 PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK 143 (605)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (605)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=3.1e-08 Score=95.72 Aligned_cols=416 Identities=7% Similarity=0.019 Sum_probs=304.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCc-ccHHHHHHHHHhCCCchHHHHHH
Q 007396 44 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGA-FDFNTLIRGFVKEVEFEEALFLY 119 (605)
Q Consensus 44 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~ 119 (605)
...|+.|+..++... ..+..+|-.-+ .+= ++..+..|+.+|++... |-+ ..|-.-+..=-..|+...|.++|
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYa---e~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYA---EFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHH---HHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 467888888887765 34555565556 777 89999999999998654 332 23555555555669999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC----
Q 007396 120 NEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK---- 195 (605)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---- 195 (605)
++-.+ ..|+...|.+.++.=.+.+.++.|..+++..+-. .|++..|-.....=.++|.+..|+.+|+...+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 98776 5899999999999999999999999999998765 488999988888888999999999999887631
Q ss_pred --ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHhccCChhhHHHH--------HHHHHHhc
Q 007396 196 --SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE--ESILVSVLSACTHLGALDLGKCT--------HGSLIRNI 263 (605)
Q Consensus 196 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~~~~~~~~~a~~~--------~~~~~~~~ 263 (605)
+...+++...-=.++..++.|.-+|+-..+. ++-+ ...|.....-=-+-|+....... ++.+++.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2234444444445677888999999888774 3433 34444444433445554433322 33444433
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe-----eeHHHHHH--------HHHhcCCHHHHHHHHHHHHHcCC
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ-----LTYSVMIS--------GLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-----~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+.|-.+|--.++.-...|+.+...++|++....-+ ..|.--|- .=....+.+.+.++|+..++. +
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 44566777777888888999999999998753211 12322221 223467899999999999872 3
Q ss_pred CCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHH
Q 007396 331 EPDDVVYVGVLSACS----HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVV 404 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 404 (605)
+-...||.-+--.|+ +..++..|.+++.... |.-|...++...|..=.+.+.++....++++. ...| +..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 444567776655544 5688999999999887 88999999999999999999999999999987 6666 4569
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEE
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQINSHH--PSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVE 477 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 477 (605)
|......-...|+.+.|..+|+-+.+...-+ ...+-..++.-...|.++.|..+++++.++.-.. ..||.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~---kvWis 545 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV---KVWIS 545 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc---hHHHh
Confidence 9998888899999999999999988764222 2234455555568899999999999998865322 16774
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=7.5e-10 Score=104.44 Aligned_cols=198 Identities=11% Similarity=0.009 Sum_probs=162.7
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
.....+..+...|.+.|++++|.+.|++..+. +...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567778889999999999999999876532 45677888889999999999999999998753 234566777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|...|+..............+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998843222234566777888899999999999999887 44444 5578888889999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998888888888899999999999999999887765
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=8.5e-11 Score=121.10 Aligned_cols=267 Identities=12% Similarity=0.114 Sum_probs=193.1
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC
Q 007396 218 KLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297 (605)
Q Consensus 218 ~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 297 (605)
.++-.|...| +.|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. ++
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 4567788889 9999999999999999999999999 9999998888899999999999999999887766 67
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 377 (605)
...+|..+..+|.++|+... ++..++ -...+...++..|....-..++..+.-..+.-||... .+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HH
Confidence 77899999999999999865 333333 1223445566666666666666654433345555543 55
Q ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHH
Q 007396 378 DLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHH-NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (605)
....-.|.++.+.+++..+|...-......++.-+.... .+++-....+...+ .| ++.+|..+...-..+|+.+.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHH
Confidence 566667888899999988864322112222344444332 33333333333333 34 6889999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcccCCccccccC
Q 007396 457 KIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDV 525 (605)
Q Consensus 457 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~ 525 (605)
.++..|+++|+.-.+.+-|. ++.| .+....++.+.+.|++.|+.|++.|+...+
T Consensus 225 ~ll~emke~gfpir~HyFwp--------Ll~g-------~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWP--------LLLG-------INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHHcCCCcccccchh--------hhhc-------CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999877777775 3333 222334555668899999999998875443
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1e-08 Score=101.36 Aligned_cols=422 Identities=11% Similarity=0.008 Sum_probs=286.1
Q ss_pred ChhHHHHHHHhcc---ChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhh--cCCCCcccHHHHH
Q 007396 30 KEQECLTILKTCK---NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQ--IDEPGAFDFNTLI 103 (605)
Q Consensus 30 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~--~~~~~~~~~~~li 103 (605)
+...+..+++-+- +...+.-+-+.+...+..|+..-| +. ++| -.|+++.|..+... +.+.|........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~--~a---q~l~~~~~y~ra~~lit~~~le~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW--LA---QVLYLGRQYERAAHLITTYKLEKRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH--HH---HHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3444555555332 134444455555555555544333 34 566 77788888777654 5668888888888
Q ss_pred HHHHhCCCchHHHHHHH----HHHHC-------C--CCCCcch----HHHHH-------HHHHccCChHHHHHHHHHHHH
Q 007396 104 RGFVKEVEFEEALFLYN----EMFER-------G--VEPDNFT----FPALF-------KACAKLQALKEGMQIHGHVFK 159 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~----~m~~~-------g--~~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~ 159 (605)
..+.+..++++|+.++. .+... + +.+|..- -+.-. ..+....+.++|+..+.+.+.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 89999999999999988 33110 0 1122111 01111 123344567777777777665
Q ss_pred hCCCCchhHHHHHHHHHHc-----------------C-CCHHHHHHHHHhc----C----------------CCChhHHH
Q 007396 160 VGFECDLFVQNSLINMYGK-----------------C-EKVEFASAIFKQM----D----------------QKSVASWS 201 (605)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~-----------------~-g~~~~A~~~~~~m----~----------------~~~~~~~~ 201 (605)
..+. .-..+-.|+....- + .+.+.-+.+|+-. . +.|+...-
T Consensus 170 ~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 170 ADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred cchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 4322 11111112211110 0 0111122222211 0 11333344
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 202 AIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
.-..-+...+++.+.+++++...+.. ++....+..-|.++...|+-..-..+=..+++.- |....+|-++.--|.-.
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 44556778899999999999998864 6666666666777788888777666666777664 55788899999999999
Q ss_pred CCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 282 GCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 282 g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+- ++-..-.+.-+..-|.+.++.+.|.++|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999876544 468999999999999999999999887663 11122233334456788999999999999
Q ss_pred HhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC--CC------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 359 RMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM--PI------QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 359 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~------~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
+.. ++.| |+...+-+.-..-..+.+.+|..+|+.. ++ ++ -..+|+.|..+|++.+..++|+..+++.
T Consensus 405 ~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 887 6666 4666676666667778899999988775 11 11 2346888899999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 429 FQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999988764
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.2e-09 Score=99.19 Aligned_cols=340 Identities=13% Similarity=0.129 Sum_probs=225.7
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchH--HHHHHHHHccCChHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTF--PALFKACAKLQALKEGMQIH 154 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~ 154 (605)
+.|....|+..|-.....-+..|.+-+....-..+.+.+.. ... |...|..-+ -.+..++-...+.+++.+-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888877665555566665543332223332222 221 122222211 12345666667888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHCCChhHHHHHHHH-HHhCC
Q 007396 155 GHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK------SVASWSAIIAAHASNGLWSECLKLFGE-MNNEK 227 (605)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g 227 (605)
......|+.-+...-+-...+.-...|+|.|+.+|+++.+. |..+|..++ |+++.+..-+ .+.+ ..+-+
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs--~LA~~v~~id 326 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLS--YLAQNVSNID 326 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHH--HHHHHHHHhc
Confidence 88888888777666666666667788899999999998754 445666655 3444332222 1111 11111
Q ss_pred CCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHH
Q 007396 228 CWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSV 304 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~ 304 (605)
+--+.|...+.+-|+-.++.+.|...|+..++.+ +....+|+.+.+-|....+...|.+-++... ..|-..|-.
T Consensus 327 --KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYG 403 (559)
T KOG1155|consen 327 --KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYG 403 (559)
T ss_pred --cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhh
Confidence 2334567777777888888888888888888877 4467788888888888888888888888665 445678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA 383 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 383 (605)
+.++|.-.+...-|+-.|++... ++| |...+.+|..+|.+.++.++|...|..... .| ..+...+..|.++|-+.
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEEL 479 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHH
Confidence 88888888888888888888877 455 456788888888888888888888888873 22 33567788888888888
Q ss_pred CCHHHHHHHHHHC-------C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 384 GMLGEALELIQSM-------P-IQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 384 g~~~~A~~~~~~m-------~-~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
++..+|...|++- + +.|... .-.-|..-+.+.+++++|..........+
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 8888888777654 2 233222 22224445567777777777666555543
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.1e-08 Score=94.41 Aligned_cols=300 Identities=10% Similarity=0.087 Sum_probs=198.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-CChh------HHHHHHHHHHHCCChhHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-KSVA------SWSAIIAAHASNGLWSECL 217 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~------~~~~li~~~~~~g~~~~A~ 217 (605)
++.++|...|-+|.+... .+..+.-+|.+.|-..|..|.|.++-+.+.+ ||.. +.-.|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 677788888888877532 2455666777888888888888888777654 3322 3344556677777777777
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC
Q 007396 218 KLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297 (605)
Q Consensus 218 ~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 297 (605)
++|..+.+.+ .- -......|+..|-+..++++|+++-+++.+.
T Consensus 128 ~~f~~L~de~--ef-----------------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 128 DIFNQLVDEG--EF-----------------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHHHHHhcch--hh-----------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 7777776655 11 1223334556666666666666666555433
Q ss_pred Ceee--------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 007396 298 CQLT--------YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVY-VGVLSACSHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 298 ~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
+... |.-+...+....+.+.|..++.+..+. .|+.+-- ..+.......|+++.|.+.++.+.+ .+..-
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~y 247 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEY 247 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHH
Confidence 3222 334555566678899999999999875 3444322 3345678889999999999999984 34344
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
-..+...|..+|...|+.++...++.++ ...+....-..+-.--....-.+.|...+.+.++..|+ ...+..|+....
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l 326 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhh
Confidence 4678888999999999999999999887 44455554445544444445567777777777777786 344455555543
Q ss_pred ---HcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEE
Q 007396 448 ---RAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFV 486 (605)
Q Consensus 448 ---~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 486 (605)
..|++.+...+++.|....++..|.+....-+-..|.|.
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 346788889999999877777666544433333344443
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.3e-11 Score=83.27 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc
Q 007396 195 KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH 245 (605)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~ 245 (605)
||+++||++|.+|++.|++++|+++|++|.+.| ++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999 99999999999999874
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=7.6e-09 Score=98.29 Aligned_cols=248 Identities=12% Similarity=0.066 Sum_probs=114.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
|+|.+|.++..+-.+.+ +-....|.....+.-+.|+.+.+..+..++.+....++..++-+........|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 44455554444444433 2222333334444444455555555555544443344444444445555555555555444
Q ss_pred HhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 291 FRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-------VVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 291 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
.++.. .+++........+|.+.|++.+...++.+|.+.|.--|. .++..++.=+...+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 43322 333444455555555555555555555555555443332 24444554444444444444444444
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 361 KLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 361 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.. ...-++..-.+++.-+.++|+.++|.+++++. +-.-|.. -..+-.+.+-++.+.-++..++..+..|++|..+
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 32 22233334444555555555555555555443 1111111 1112223444455555555555555555555555
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 440 VLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
..|+..|.+.+.|.+|.+.|+...+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555555554433
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.21 E-value=3.1e-09 Score=109.87 Aligned_cols=393 Identities=13% Similarity=0.039 Sum_probs=227.0
Q ss_pred HHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCC----CcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 007396 49 KVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEP----GAFDFNTLIRGFVKEVEFEEALFLYNEMF 123 (605)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 123 (605)
.++..+...|+.|+.++|..++ .-| ..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLi---arYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLI---ARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHH---HHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 3567778889999999999999 889 999999988 88877653 3345777777777777766654
Q ss_pred HCCCCCCcchHHHHHHHHHccCChHH---HHHHHHHHH----HhCC-----------------CCchhHHHHHHHHHHcC
Q 007396 124 ERGVEPDNFTFPALFKACAKLQALKE---GMQIHGHVF----KVGF-----------------ECDLFVQNSLINMYGKC 179 (605)
Q Consensus 124 ~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~y~~~ 179 (605)
.|-..||..++.+|...||+.. .++.+..+. ..|+ -||.. .++....-.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHH
Confidence 5667778888888877777554 222121111 1121 11111 112222223
Q ss_pred CCHHHHHHHHHhcC----------------------------------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 180 EKVEFASAIFKQMD----------------------------------QKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 180 g~~~~A~~~~~~m~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
|-++.+.+++..++ .++..++.+++..-..+|+.+.|..++.+|++
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 33444444433222 24667788888888889999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHH-----------hcc
Q 007396 226 EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLF-----------RMM 294 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f-----------~~m 294 (605)
.| ++.+.+-|-.++-+ .++...+..+...|...|+.|+..++.-.+-...+.|....+.... ..|
T Consensus 233 ~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 233 KG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred cC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 99 88888877777655 7777788888888889999998888877666665544332221111 000
Q ss_pred CCC-----------------------------CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH-HHHHHHHH
Q 007396 295 ADK-----------------------------CQLTYSVMISGLAMHGQGKEALSIFSEMLRE--GLEPDD-VVYVGVLS 342 (605)
Q Consensus 295 ~~~-----------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-~t~~~ll~ 342 (605)
... ....|. ++.-...+|..++..++...|..- ...|+. ..|..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 000 001222 222233357777777777666431 122222 23444443
Q ss_pred HHhccC----------------------CHHHHHHHHHHhHHh---------------cCCCC-------ChHHHHHHHH
Q 007396 343 ACSHAG----------------------LVNEGLLCFDRMKLE---------------YRIVP-------TVQHYGCVVD 378 (605)
Q Consensus 343 a~~~~g----------------------~~~~a~~~~~~~~~~---------------~~~~p-------~~~~~~~li~ 378 (605)
-|.+.- +..+..+......+. ....| -...-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 333211 111111111110000 00000 0011223344
Q ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHcCChhHH
Q 007396 379 LMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH---HPSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a 455 (605)
.+.+.-+..+++..-++..-.-=...|..|+.-+..+...+.|..+.+++...+.. +...+..+.+.+.+.+...++
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 44444444444443333310001146777778788888888888887777665432 445677788888888888888
Q ss_pred HHHHHHHHh
Q 007396 456 AKIRTEMAS 464 (605)
Q Consensus 456 ~~~~~~m~~ 464 (605)
.++++++.+
T Consensus 548 ~tiL~e~ks 556 (1088)
T KOG4318|consen 548 STILYEDKS 556 (1088)
T ss_pred HHHHhhhhH
Confidence 888888876
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=4.3e-09 Score=112.18 Aligned_cols=260 Identities=13% Similarity=0.011 Sum_probs=186.5
Q ss_pred ChhHHHHHHHHHHH-----CCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHh---------ccCChhhHHHHHHHHH
Q 007396 196 SVASWSAIIAAHAS-----NGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACT---------HLGALDLGKCTHGSLI 260 (605)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~---------~~~~~~~a~~~~~~~~ 260 (605)
+...|...+.+-.. .+..++|+.+|++..+. .|+ ...+..+..++. ..++++.|...++.++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 45566666666322 23467999999999874 454 444544444332 2345789999999999
Q ss_pred HhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H
Q 007396 261 RNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV-V 336 (605)
Q Consensus 261 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 336 (605)
+.. +.+...+..+...+...|++++|...|++..+. +...|..+...+...|++++|+..+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 886 446788888999999999999999999987633 3457888889999999999999999999884 55532 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASK 413 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~ 413 (605)
+..++..+...|++++|...++++... ..| ++..+..+...|...|+.++|.+.++++ +..|+.. .++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566789999999999988742 234 3555777888899999999999999987 4556544 4555555666
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..| +.+...++.+.+..-..+..+..+...|+-.|+-+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4788878777765433333333477778888888877776 7776644
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=8.4e-09 Score=104.98 Aligned_cols=231 Identities=15% Similarity=0.095 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHHh-----c-CCchH-HHHhHHHhHHHhcCCHHHHHHHHhccCC-------C-
Q 007396 233 ESILVSVLSACTHLGALDLGKCTHGSLIRN-----I-SALNV-IVETSLIDMYVKCGCLEKGLCLFRMMAD-------K- 297 (605)
Q Consensus 233 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~- 297 (605)
..|+..+...|...|+++.|..++...++. | ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777788888888888888777654 1 12222 2234567788888888888888877641 1
Q ss_pred C---eeeHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 007396 298 C---QLTYSVMISGLAMHGQGKEALSIFSEMLR-----EGLEPD-D-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYR-- 365 (605)
Q Consensus 298 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 365 (605)
+ ..+++.|..+|...|++++|...+++..+ .|..+. . .-++.+...|...+.+++|..++....+-+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 34677788888999998888887776643 222222 2 2466677788999999999999887764333
Q ss_pred CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-------C--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 366 IVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-------P--IQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 366 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~--~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
+.++ ..+|+.|...|...|++++|++++++. . ..+. ...++.|..+|.+.++.+.|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467999999999999999999999887 1 1222 346788888999999999999999886543
Q ss_pred ----CCCC---CchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 432 ----NSHH---PSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 432 ----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+|.. ..+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 3568889999999999999999998876
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=7.1e-08 Score=93.79 Aligned_cols=228 Identities=11% Similarity=0.009 Sum_probs=177.1
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHH
Q 007396 207 HASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEK 286 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 286 (605)
+.-.|+.-.|...|+...... .. +...|.-+..+|.+..+.++..+.|+...+.+ +.|+.+|..-..++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~-~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD-PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC-cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 456789999999999998865 22 23338888888999999999999999999987 4477788888889999999999
Q ss_pred HHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 007396 287 GLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLE 363 (605)
Q Consensus 287 A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 363 (605)
|..=|++...- ++..|--+-.+.-+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999988754 4556666666777888999999999999885 444456788888999999999999999998872
Q ss_pred cCCCCC---------hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 364 YRIVPT---------VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 364 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
+.|. +.+--.++..- -.+++..|.+++++. .+.|.. ..+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 22222222222 348999999999988 666654 488999999999999999999999988763
Q ss_pred CCCCchHHHHHHHH
Q 007396 433 SHHPSDYVLLSNMY 446 (605)
Q Consensus 433 ~~~~~~~~~l~~~~ 446 (605)
.+-.-++.+|
T Consensus 568 ----rt~~E~~~a~ 577 (606)
T KOG0547|consen 568 ----RTESEMVHAY 577 (606)
T ss_pred ----HhHHHHHHHH
Confidence 3333444444
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.7e-07 Score=89.24 Aligned_cols=302 Identities=10% Similarity=-0.029 Sum_probs=210.7
Q ss_pred CCcchHHHHHHHHHc--cCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHH---
Q 007396 129 PDNFTFPALFKACAK--LQALKEGMQIHGHVFKV-GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSA--- 202 (605)
Q Consensus 129 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~--- 202 (605)
|+..+...-+.+++. .++-..+.+.+-.+... -++.|+....++..+|...|+.++|...|++...-|+.+...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333444444555443 34555555555544443 356678888999999999999999999999877555443332
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 282 (605)
..-.+.+.|++++...+...+.... .-+...|..-+...-..++++.|..+-+..++.. +-++..+-.-...+...|
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 2334567888888888877776532 2333333333444455677788887777777665 334555555566777889
Q ss_pred CHHHHHHHHhccC--C-CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-hccCCHHHHHHHH
Q 007396 283 CLEKGLCLFRMMA--D-KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL-SAC-SHAGLVNEGLLCF 357 (605)
Q Consensus 283 ~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~-~~~g~~~~a~~~~ 357 (605)
+.++|.-.|+... . -+..+|.-++..|...|++.+|.-+-+...+. +.-+..+...+. ..| -....-++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999999998654 3 36789999999999999999998877765542 333445554442 222 2334457888888
Q ss_pred HHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 358 DRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 358 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
+... .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...+...+.+.+|...|..+++++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8765 45565 455677788888999999999999886 667899999999999999999999999999999999986
Q ss_pred Cc
Q 007396 436 PS 437 (605)
Q Consensus 436 ~~ 437 (605)
..
T Consensus 505 ~~ 506 (564)
T KOG1174|consen 505 KR 506 (564)
T ss_pred hH
Confidence 44
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=2.1e-08 Score=94.49 Aligned_cols=192 Identities=13% Similarity=0.006 Sum_probs=117.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMY 176 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 176 (605)
..+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++..++.... +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 445666677777777777777777776643 223445666666777777777777777777766533 455666667777
Q ss_pred HcCCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh
Q 007396 177 GKCEKVEFASAIFKQMDQK-----SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL 251 (605)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~ 251 (605)
...|++++|.+.|++.... ....+..+...+...|++++|...|.+..... +.+...+..+...+...|+++.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776431 23355556666777777777777777766543 2234455555555566666666
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 252 GKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
|...++...+. .+.+...+..+...+...|+.++|..+++.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666655554 233344444455555555555555554443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.1e-08 Score=94.23 Aligned_cols=230 Identities=13% Similarity=0.122 Sum_probs=178.8
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh
Q 007396 201 SAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK 280 (605)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 280 (605)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+++.|..++.+-++.- +-|+....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 56788899999999999999888774 4667788888889999999999998888887764 4455555666777778
Q ss_pred cCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007396 281 CGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF 357 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 357 (605)
.++.++|.++++...+. ++.+..++..+|.-.++++-|+..++++.+.|+. +...|..+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888876633 4566666777788888888888888888888865 5567777777777777777777666
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.+... -.-+.++| ..+|-.|.......||+..|.+.|+-.+..++++..
T Consensus 382 ~RAls-------------------tat~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALS-------------------TATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHh-------------------hccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 65542 11112222 225666666667789999999999999999999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.++.|.-.-.+.|+.++|..+++......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887654
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3.9e-08 Score=96.01 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=147.6
Q ss_pred ChhhHHHHHHHHHHhc-CC--chHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHH
Q 007396 248 ALDLGKCTHGSLIRNI-SA--LNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSI 321 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~-~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 321 (605)
..+.+..-+.+++... .. .....|..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455556666666432 12 2245677888889999999999999987753 3467899999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CC
Q 007396 322 FSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PI 398 (605)
Q Consensus 322 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 398 (605)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.|++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999987 4565 46777788888889999999999998874 3454332222233345677899999999664 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 399 QQNDVVWRSLLSASKVHHNLEIGEIAAKNLF-------QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 399 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
.|+...| .......|+...+ ..++.+. ++.|..+..|..++..|.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 1222335555443 2444444 44455667899999999999999999999999987653
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.3e-07 Score=90.95 Aligned_cols=279 Identities=11% Similarity=0.006 Sum_probs=212.8
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHH
Q 007396 162 FECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVS 238 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ 238 (605)
...+..+.....+-+...+++.+..++++.+-+.| ...+..-|..+...|+..+-+.+=.+|.+.- +-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 34456666667777788899999999999987654 4466677888999999998888888888863 667889999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQG 315 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 315 (605)
+.--|-..|...+|++.|....... +.-...|-.+...|+-.|..++|...+....+ ..-..+--+.--|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 9988888899999999999887665 22456788899999999999999887765431 1112222344457889999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCC----ChHHHHHHHHHHHhcCCHHHH
Q 007396 316 KEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEY-RIVP----TVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A 389 (605)
+.|.+.|.+... +-|+. ..++-+.-...+.+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998875 56654 455555555566889999999998876211 1111 234578888999999999999
Q ss_pred HHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 390 LELIQSM-PI-QQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 390 ~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
...+++. .. +.+..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|..+
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999987 33 34677888999899999999999999999999999876655555433
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=1e-07 Score=101.66 Aligned_cols=240 Identities=9% Similarity=0.009 Sum_probs=141.6
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------cCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCCh
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYG---------KCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLW 213 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 213 (605)
++++|.+.+++.++..+. +...|..+..+|. ..+++++|...+++..+ .+..+|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 456677777777666432 3444554444433 22346777777776653 2455666777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 214 SECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 214 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
++|...|++..+.+ +.+...+..+..++...|++++|...++.+.+.... +...+..+...+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777777643 334555666666777777777777777777776533 222233344445567778888877776
Q ss_pred cCC---C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 007396 294 MAD---K-CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVG-VLSACSHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 294 m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
... + +...+..+...|...|+.++|...+.++... .|+..+... +...+...| +++...++.+.+...-.|
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 542 2 2344666667777788888888888776542 444443333 333445555 466666666654333334
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
....+.. ..|.-.|+-+.+..+ +++
T Consensus 508 ~~~~~~~--~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 508 NNPGLLP--LVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred cCchHHH--HHHHHHhhhHHHHHH-HHh
Confidence 3333323 334445555555555 555
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=7.2e-07 Score=91.75 Aligned_cols=399 Identities=13% Similarity=0.048 Sum_probs=244.4
Q ss_pred CCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-
Q 007396 58 GFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF- 132 (605)
Q Consensus 58 g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~- 132 (605)
.+..|+.+|..|. -.. .+|+++.+-+.|++... .....|+.+-..|+-.|.-..|+.+++.-......|+..
T Consensus 318 ~~qnd~ai~d~Lt---~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 318 KFQNDAAIFDHLT---FALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3456777777776 555 89999999999988654 345569999889999999899999988876554335443
Q ss_pred hHHHHHHHHHc-cCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHcC-----------CCHHHHHHHHHhcCCC-
Q 007396 133 TFPALFKACAK-LQALKEGMQIHGHVFKV--GF--ECDLFVQNSLINMYGKC-----------EKVEFASAIFKQMDQK- 195 (605)
Q Consensus 133 t~~~ll~~~~~-~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~~~- 195 (605)
.+...-+.|.+ .+..+++..+-.+++.. |. ......|-.+.-+|... ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 34444445543 47777777777777662 11 11234444444444422 1234455556655322
Q ss_pred --ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhH
Q 007396 196 --SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETS 273 (605)
Q Consensus 196 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (605)
|..+---+.--|+-.++.+.|++..++..+-+ -.-+...+..+.-.++..+++..|..+.+.....- +.|-...-.
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 22222222333566677888888888877764 35566666666666677777777877776665321 011111111
Q ss_pred HHhHHHhcCCHHHHHHHHh--------------------------ccC-----CCCee-eHHHHHHHHHhcCCHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFR--------------------------MMA-----DKCQL-TYSVMISGLAMHGQGKEALSI 321 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~--------------------------~m~-----~~~~~-~~~~li~~~~~~g~~~~A~~~ 321 (605)
-+..-...++.++|..... .+. ..+.. ++..+. +.+. -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccc
Confidence 1111222333333332221 111 00111 111111 1111 000000000
Q ss_pred HHHHHHcCCC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 007396 322 FSEMLREGLE--PDD------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELI 393 (605)
Q Consensus 322 ~~~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 393 (605)
.. |...-+. |+. ..+......+...+..++|...+.+..+ -..-....|......+...|.+++|.+.|
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00 1111122 221 2344455567788888899888777762 22334566777777888899999999988
Q ss_pred HHC-CCCCCHH-HHHHHHHHHHhcCChHHHHH--HHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 394 QSM-PIQQNDV-VWRSLLSASKVHHNLEIGEI--AAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 394 ~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
... .+.|+.+ +..++...+...|+...|.. ++..+.+.+|.++..|..|+.++-+.|+.++|.+.|....+..
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 876 6778765 88899999999999888888 9999999999999999999999999999999999999887654
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=1.3e-07 Score=96.48 Aligned_cols=231 Identities=12% Similarity=0.046 Sum_probs=160.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhC-----CCCCCChhHHH-HHHHHHhccCChhhHHHHHHHHHHh-----c--CCc
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNE-----KCWRPEESILV-SVLSACTHLGALDLGKCTHGSLIRN-----I--SAL 266 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~-----~--~~~ 266 (605)
...+...|...|++++|+.+++...+. |...|...+.. .+...+...+.+++|..+|+.+... | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333666677777777777777665542 11134433332 3555666777777777777776642 1 112
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccCC-------C---Ce-eeHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMAD-------K---CQ-LTYSVMISGLAMHGQGKEALSIFSEMLRE---GLEP 332 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~---~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p 332 (605)
-..+++.|..+|.+.|++++|...+++..+ . .+ ..++.++..+...+++++|..++++..+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 234566677788888888888777765431 1 11 24666777888999999999999876542 2333
Q ss_pred CH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC------
Q 007396 333 DD----VVYVGVLSACSHAGLVNEGLLCFDRMKLEY----R-IVPT-VQHYGCVVDLMGRAGMLGEALELIQSM------ 396 (605)
Q Consensus 333 ~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m------ 396 (605)
+. .+++.|...|.+.|++++|..+|+++.... + ..+. ...++-|...|.+.++..+|.++|.+.
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 33 478999999999999999999999887532 1 1222 456788888999999999998888765
Q ss_pred --CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 397 --PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 397 --~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
+-.|+.. +|..|...|...|+++.|+++.+.+..
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3456654 899999999999999999999998874
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=2e-05 Score=79.67 Aligned_cols=393 Identities=13% Similarity=0.102 Sum_probs=217.2
Q ss_pred hhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC------CCCCcchHH
Q 007396 63 PFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERG------VEPDNFTFP 135 (605)
Q Consensus 63 ~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~ 135 (605)
..+|...+ .+. ..|-++-+.+++++-.+-++..-+--|..++..+++++|-+.+...+... .+-+...|.
T Consensus 138 ~rIW~lyl---~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 138 DRIWDLYL---KFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred ccchHHHH---HHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 33444444 444 56666666666666555455555666666666777777666666654321 122223344
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHcCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGF--ECD--LFVQNSLINMYGKCEKVEFASAIFKQMDQK--SVASWSAIIAAHAS 209 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~ 209 (605)
-+-...++..+.-....+ +.+++.|+ -+| -..|++|.+.|.+.|.++.|..+|++..+. .+.-|+.+.+.|++
T Consensus 215 elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 333333333222211111 11222222 222 357888888888999999998888875532 22223333333332
Q ss_pred C----------------C------ChhHHHHHHHHHHhCCCC----------CCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 210 N----------------G------LWSECLKLFGEMNNEKCW----------RPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 210 ~----------------g------~~~~A~~~~~~m~~~g~~----------~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
- | +++-.+.-|+.+...+.+ +-+..++..-.. ...|+..+-...+.
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHH
Confidence 1 1 122223333333322100 111111111111 12234445555666
Q ss_pred HHHHhc-----CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee-------eHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 258 SLIRNI-----SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL-------TYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 258 ~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
++++.- +..-...|..+.+.|-..|+++.|..+|++..+-+-. +|..-...=.++.+++.|+++.++.
T Consensus 372 eAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 372 EAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 666431 1112356788899999999999999999988755432 4555555556788899999988877
Q ss_pred HHcCC----------CC-CH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007396 326 LREGL----------EP-DD------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGE 388 (605)
Q Consensus 326 ~~~g~----------~p-~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 388 (605)
....- .| .. ..|...+..--..|-++....+++.+. +..+. ++...-.....+-...-+++
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii-dLria-TPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII-DLRIA-TPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhcC-CHHHHHHHHHHHHhhHHHHH
Confidence 53211 11 11 123333333344577888888888887 34432 22222222233445567899
Q ss_pred HHHHHHHC-C-C-CCCHH-HHHHHHHHHHh---cCChHHHHHHHHHHHhhCCCC-Cc-hHHHHHHHHHHcCChhHHHHHH
Q 007396 389 ALELIQSM-P-I-QQNDV-VWRSLLSASKV---HHNLEIGEIAAKNLFQINSHH-PS-DYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 389 A~~~~~~m-~-~-~p~~~-~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+.+++++- + + -|++. +|++.+.-+.+ ....+.|..+|+++++..|+. .. .|...+..-.+-|....|.+++
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999886 2 2 35655 89998886643 246899999999999987752 22 2333333334557777788877
Q ss_pred HHHH
Q 007396 460 TEMA 463 (605)
Q Consensus 460 ~~m~ 463 (605)
++..
T Consensus 610 erat 613 (835)
T KOG2047|consen 610 ERAT 613 (835)
T ss_pred HHHH
Confidence 7753
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.1e-05 Score=80.92 Aligned_cols=394 Identities=14% Similarity=0.124 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhhccccccccCccCCCChHHHHHHHhhcCCCCcccHHH--HHHHH--HhCCCchHHHHHH
Q 007396 44 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNT--LIRGF--VKEVEFEEALFLY 119 (605)
Q Consensus 44 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~--~~~g~~~~A~~l~ 119 (605)
.+.+.+.-..++..+..+....+-.++ .+-+.+.+++|+.+.+.-..- .+++. +=.+| .+.+..++|+..+
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvV---alIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVV---ALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHh---hhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 566777777777766433333444444 333777888888666554321 11222 22333 3567778888777
Q ss_pred HHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh
Q 007396 120 NEMFERGVEPDNF-TFPALFKACAKLQALKEGMQIHGHVFKVGFEC-DLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV 197 (605)
Q Consensus 120 ~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 197 (605)
+ |..++.. +...-...|-+.+++++|..+|+++.+.+.+. |...-..++..- -.-.+. +.+..+....
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhccCCCc
Confidence 7 3333333 55555566777888888888888887765321 111111111110 001111 2222222111
Q ss_pred hHHHHH---HHHHHHCCChhHHHHHHHHHHhCCC--C---CCC-h------hH-HHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 198 ASWSAI---IAAHASNGLWSECLKLFGEMNNEKC--W---RPE-E------SI-LVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 198 ~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~--~---~p~-~------~t-~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
.+|..+ ...+...|++.+|+++++...+.+. + .-+ . .+ -.-+.-++-..|+-++|..++..+++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 122211 2234445555555555554411000 0 000 0 00 01112222344555555555555554
Q ss_pred hcCCch--------------------------------------------------HHHHhHHHhHHHhcCCHHHHHHHH
Q 007396 262 NISALN--------------------------------------------------VIVETSLIDMYVKCGCLEKGLCLF 291 (605)
Q Consensus 262 ~~~~~~--------------------------------------------------~~~~~~li~~y~~~g~~~~A~~~f 291 (605)
...... ...-+.++.+|. +..+.+.++-
T Consensus 253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~ 330 (652)
T KOG2376|consen 253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELS 330 (652)
T ss_pred hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHH
Confidence 432111 111122222222 2233333333
Q ss_pred hccCCCC-eeeHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------
Q 007396 292 RMMADKC-QLTYSVMISGL--AMHGQGKEALSIFSEMLREGLEPDD--VVYVGVLSACSHAGLVNEGLLCFD-------- 358 (605)
Q Consensus 292 ~~m~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~-------- 358 (605)
...+... ...+..++... ++.....+|.+++...-+. .|+. ......+......|+++.|.+++.
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 3333222 12333333322 2223466777777766653 3443 344445556678899999999998
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--------PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
.+. +.+.. +.+...++.+|.+.++.+.|.+++.+. .-.+.. .+|.-+...-.++|+.++|..+++++.
T Consensus 409 s~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 444 23333 455667888898888877676666554 222222 244444444567899999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
+.+|++..+...++.+|++. +.+.|..+-+
T Consensus 486 k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 486 KFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999999999999887 4566655443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=4.5e-07 Score=88.53 Aligned_cols=218 Identities=11% Similarity=-0.006 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHH
Q 007396 212 LWSECLKLFGEMNNEKCWRPE--ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLC 289 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 289 (605)
..+.++.-+.++.......|+ ...|......+...|+.+.|...|...++.. +.+...|+.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344455555555432211222 1234444445555566666666666555554 3356677777888888888888888
Q ss_pred HHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 290 LFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 290 ~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
.|+...+. +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 88776532 3456777777888888888888888888763 45443222222233456788888888866552 22
Q ss_pred CCChHHHHHHHHHHHhcCCHHH--HHHHHHHC-CC----CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 367 VPTVQHYGCVVDLMGRAGMLGE--ALELIQSM-PI----QQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.|+...+ .++..+ .|+..+ +.+.+.+- .. .|+ ...|..+...+...|+.++|+..|+++.+.+|.+..
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3332222 233332 444433 33222221 11 122 247888889999999999999999999999975443
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.4e-05 Score=74.00 Aligned_cols=295 Identities=10% Similarity=-0.033 Sum_probs=196.7
Q ss_pred CCCchhHHHHHHHHHHcC--CCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChh
Q 007396 162 FECDLFVQNSLINMYGKC--EKVEFASAIFKQMD-----QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEES 234 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~ 234 (605)
..|........+.+|+.+ ++-..|...|-.+. ..|+.....+...+...|+.++|+..|++.+. +.|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i 266 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNV 266 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhh
Confidence 344444444455555543 44334443332222 34677888899999999999999999998875 445443
Q ss_pred H-HHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe---eeHHHHHHHHH
Q 007396 235 I-LVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ---LTYSVMISGLA 310 (605)
Q Consensus 235 t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~ 310 (605)
+ .....-.+.+.|+++....+...+....- .....|-.-........++..|+.+-++..+-|. ..|-.-...+.
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI 345 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence 2 11122223566777777777666654331 1122222223334445678888888877664444 34443445788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH-HHHHh-cCCHH
Q 007396 311 MHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV-DLMGR-AGMLG 387 (605)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~ 387 (605)
+.|+.++|.-.|+..+. +.| +-..|..|+.+|...|...+|...-+...+ -+..+..+.+.+. ..+.- .-.-+
T Consensus 346 ~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred hccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHH
Confidence 88999999999998876 554 457899999999999999998887766653 3334444444331 22222 12247
Q ss_pred HHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|..++++. .++|+-. ..+.+...|...|..+.++.++++.+...|+ ....+.|++.+...+.+.+|.+.|......
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788888886 7788755 6677777889999999999999999888774 678889999999999999999988777653
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=3.7e-07 Score=80.75 Aligned_cols=159 Identities=11% Similarity=0.114 Sum_probs=120.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMG 381 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 381 (605)
-+.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.| +..+.|-..-.+|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHH
Confidence 3455677777777777777777763 4443 467777777777888888888777776 3344 3456666667777
Q ss_pred hcCCHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 382 RAGMLGEALELIQSM---PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m---~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
..|++++|...|++. |.-|. ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888776 32232 34788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 007396 458 IRTEMASKGL 467 (605)
Q Consensus 458 ~~~~m~~~~~ 467 (605)
.++....++.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9988887665
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.84 E-value=8.4e-05 Score=75.51 Aligned_cols=381 Identities=11% Similarity=0.055 Sum_probs=244.1
Q ss_pred cCCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHHccCChHHHH
Q 007396 76 SHWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN-FTFPALFKACAKLQALKEGM 151 (605)
Q Consensus 76 y~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 151 (605)
+..|+-++|......-.. ++.+.|..+.-.+-...++++|+..|...... .||. ..+.-+--.-++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 378899999988877665 45677998888888888999999999999875 4554 34544444456778888777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CChhHHHHH------HHHHHHCCChhHHHHHH
Q 007396 152 QIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-----KSVASWSAI------IAAHASNGLWSECLKLF 220 (605)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~ 220 (605)
..-..+.+..+. ....|..+..++.-.|+...|..+.++..+ ++...+.-. .......|..++|++.+
T Consensus 130 ~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 777776666432 556778888888888999999888877652 333333222 23456788888888877
Q ss_pred HHHHhCCCCCCChhHHH-HHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH-HHHhccCCCC
Q 007396 221 GEMNNEKCWRPEESILV-SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL-CLFRMMADKC 298 (605)
Q Consensus 221 ~~m~~~g~~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m~~~~ 298 (605)
..-... ..|...+. .-...+.+.+++++|..++..++... +.+...|..+..++.+-.+.-++. .+|....+.-
T Consensus 209 ~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 664432 23333332 33455678899999999999988875 334455555556665444444444 6666554221
Q ss_pred ee--eHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH----HHHHHHHHhHHhcC------
Q 007396 299 QL--TYSVMISGLAM-HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN----EGLLCFDRMKLEYR------ 365 (605)
Q Consensus 299 ~~--~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~~~------ 365 (605)
.. .-.-+--.... ..-.+..-+++..+.+.|+.+- |..+.+-+-.....+ -+..+...+.. .|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D 360 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSG-TGMFNFLD 360 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhccc-ccCCCccc
Confidence 10 00000001111 2223344556777778887643 333333332222111 12222222221 11
Q ss_pred ----CCCChH--HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 366 ----IVPTVQ--HYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 366 ----~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
-+|... ++-.++..|-+.|+++.|+..++.. +-.|+.+ .|..-...+...|+++.|...++++.+++-.|..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 134443 4556788899999999999999987 6567765 5656667788899999999999999999876554
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
.-.--+.-..++.+.++|.++.....+.|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 444556666788999999999988877664
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.84 E-value=7.3e-05 Score=75.75 Aligned_cols=362 Identities=10% Similarity=0.156 Sum_probs=190.0
Q ss_pred hHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH
Q 007396 81 MDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFER-GVEPDNFTFPALFKACAKLQALKEGMQIHGHVFK 159 (605)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 159 (605)
++.+...+.+|+. .|-.-+..+..+|+.......|+..+.. -+.-....|...+......+-++.+..+++..++
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3444444444442 4555555666666666666666665543 1222233455555555555666666666666654
Q ss_pred hCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHCCChh---HHHHHHHHHHhC
Q 007396 160 VGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK----------SVASWSAIIAAHASNGLWS---ECLKLFGEMNNE 226 (605)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~ 226 (605)
.. +..-+.-|..+++.+++++|.+.+...... +-..|+.+-...+++-+.- ....+++.+..
T Consensus 167 ~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~- 241 (835)
T KOG2047|consen 167 VA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR- 241 (835)
T ss_pred cC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc-
Confidence 42 223445555666666666666666555422 2234544444444332222 22223333322
Q ss_pred CCCCCCh--hHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC----------------------
Q 007396 227 KCWRPEE--SILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG---------------------- 282 (605)
Q Consensus 227 g~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---------------------- 282 (605)
.-+|. ..+.+|..-|.+.|.++.|+.++++.+..-. .+.-++.+.++|+...
T Consensus 242 --rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 242 --RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred --cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 22333 2345555566666666666666655554321 2222333333333211
Q ss_pred CHHHHHHHHhccCCC---------------CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHH
Q 007396 283 CLEKGLCLFRMMADK---------------CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD------VVYVGVL 341 (605)
Q Consensus 283 ~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll 341 (605)
+++-...-|+.+..+ ++..|..-+. ...|+..+-...|.+..+. +.|-. ..|..+.
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHH
Confidence 122222333332211 2223332222 3356677777777777764 44432 3566677
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCC---------------
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPT---VQHYGCVVDLMGRAGMLGEALELIQSM---PIQQ--------------- 400 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--------------- 400 (605)
.-|-..|+++.|..+|++..+ -..+.- ..+|..-.++=.+..+++.|++++++. |-.|
T Consensus 395 klYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 777888888888888887763 222211 345666666667777888888888776 2211
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 401 --NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 401 --~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+..+|..++..--..|-++....++++++++..-.|......+..+....-++++.+++
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12355555665566677777777888877776555544444444445555566666665
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.8e-07 Score=86.41 Aligned_cols=220 Identities=8% Similarity=-0.056 Sum_probs=118.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHCCC
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--K-SVASWSAIIAAHASNGL 212 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 212 (605)
.+.++|.+.|.+.+|...++..++.. |-+.+|-.|-.+|-+..+...|+.+|.+-.+ | |+.-..-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 34445555555555555555554442 2333444455555555555555555554432 2 22222334444555555
Q ss_pred hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 213 WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 213 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
.++|+++|+...+.. +.+......+...+.-.+++|.|..++..+.+.|.. +...|+.+.-.+.-.+++|-++.-|.
T Consensus 306 ~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 566666666555543 334444445555555555666666666666666533 45555555555555666666665555
Q ss_pred ccC----CCC--eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 293 MMA----DKC--QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 293 ~m~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
+.. +++ ...|-.+.......|++.-|.+.|+-..... .-+...++.|.-.-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 432 222 2345555555566677777777776665432 1123466666666667777777777777665
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=2.9e-06 Score=87.74 Aligned_cols=256 Identities=10% Similarity=0.019 Sum_probs=159.7
Q ss_pred HHHHcCCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHh-cc---
Q 007396 174 NMYGKCEKVEFASAIFKQMDQ--KSVA-SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACT-HL--- 246 (605)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~-~~--- 246 (605)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|-..+..|. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccc
Confidence 445677888888888766543 2433 34455667777788888888888887754 55555544444433 11
Q ss_pred --CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCH-HHHHHHHH
Q 007396 247 --GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQG-KEALSIFS 323 (605)
Q Consensus 247 --~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 323 (605)
.+.+.-.++++.+...-+..+. ...+.-.+.....+ ..+...+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~---------------------------------~~rl~L~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDA---------------------------------PRRLPLDFLEGDEFKERLDEYLR 135 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccc---------------------------------hhHhhcccCCHHHHHHHHHHHHH
Confidence 1223333333333222211110 00011111111112 24455666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-------------CCCCChH--HHHHHHHHHHhcCCHHH
Q 007396 324 EMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEY-------------RIVPTVQ--HYGCVVDLMGRAGMLGE 388 (605)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~ 388 (605)
.+...|++ .+|+.|-..|......+-...++....... .-+|+.. ++..+...|-..|++++
T Consensus 136 ~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 67777765 355555555655555554555555443211 1123332 44566788889999999
Q ss_pred HHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 389 ALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 389 A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|++++++. ...|+.+ .|..-...+...|++++|.+.++.+.++++.|...-.-.+..+.++|+.++|.+++......+
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999976 6667754 777778889999999999999999999999888777788888899999999999999887776
Q ss_pred CC
Q 007396 467 LN 468 (605)
Q Consensus 467 ~~ 468 (605)
..
T Consensus 293 ~~ 294 (517)
T PF12569_consen 293 VD 294 (517)
T ss_pred CC
Confidence 53
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=1.1e-05 Score=81.64 Aligned_cols=198 Identities=8% Similarity=-0.112 Sum_probs=108.5
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL-EPDD--VVYVGVLS 342 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~ 342 (605)
.....+...+...|++++|.+.+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3334455566667777777777766542 2344556666667777777777777776665321 1222 23445556
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCCHHHHHHH---HHHC-CCCCC---HHHHHHHHHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHY-G--CVVDLMGRAGMLGEALEL---IQSM-PIQQN---DVVWRSLLSAS 412 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p~---~~~~~~ll~a~ 412 (605)
.+...|+.++|..+++.........+..... + .++..+...|..+.+.++ .... +..|. .........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 6667777777777777664211111111111 1 222223333322222222 1111 11011 12222455566
Q ss_pred HhcCChHHHHHHHHHHHhhCCC---------CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSH---------HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|+.+.|..+++.+...... ..........++...|++++|.+.+.......
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7788888888888887653211 23445667777889999999999998887654
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=8.7e-07 Score=85.32 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=116.2
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS- 345 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~- 345 (605)
+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHH
Confidence 3334444445667788888888888765 34455566788899999999999999999863 444 34444554443
Q ss_pred ---ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCh-H
Q 007396 346 ---HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNL-E 419 (605)
Q Consensus 346 ---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~-~ 419 (605)
..+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++++. ...|+ ..+...++.+....|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 23468999999999874 45678888999999999999999999998885 44454 44777777777777877 7
Q ss_pred HHHHHHHHHHhhCCCCC
Q 007396 420 IGEIAAKNLFQINSHHP 436 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~ 436 (605)
.+.+.+.++....|..+
T Consensus 254 ~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 78889999998888755
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=2.2e-05 Score=73.76 Aligned_cols=375 Identities=15% Similarity=0.069 Sum_probs=219.1
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~ 152 (605)
..|++++|..++..+.+ ++...|-.|.-.+.-.|.+.+|..+-... |+.. .-..++...-+.++-++-..
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHH
Confidence 78888888888776543 45555666665555567777776665443 2333 23334455556677777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHH-HHHHHCCChhHHHHHHHHHHhCCCC
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAII-AAHASNGLWSECLKLFGEMNNEKCW 229 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~ 229 (605)
+++.+-.. ..-.-+|..+.--.-.+.+|.+++.++.. |+....|.-+ -+|.+...++-+.+++.--... +
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~ 215 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--F 215 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--C
Confidence 77666432 12223344443334458899999988765 3444555443 4567777788888887776653 2
Q ss_pred CCChhHHHHHHHHHhccCChhhHHH--------------HHHHHHHhcC------C------c-----hHHHHhHHHhHH
Q 007396 230 RPEESILVSVLSACTHLGALDLGKC--------------THGSLIRNIS------A------L-----NVIVETSLIDMY 278 (605)
Q Consensus 230 ~p~~~t~~~ll~a~~~~~~~~~a~~--------------~~~~~~~~~~------~------~-----~~~~~~~li~~y 278 (605)
+-+.+..+.......+.=.-..|++ ..+.+.+.++ + | -+..--.|+--|
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 2233333322222222111111111 1112222110 0 0 012233456678
Q ss_pred HhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQ-------GKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLV 350 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 350 (605)
.+.+++++|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+..-|.. --.++.+++.-..++
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 899999999999988876554444332223344443 344555555443444433332 122334444455678
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHH-HHHhcCChHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMP-IQ-QNDVVWRSLLS-ASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~-a~~~~g~~~~a~~~~~~ 427 (605)
++..-+++.+. .+=...|...+ .+.++++..|.+.+|+++|-++. .+ .|..+|.+++. +|..++..+.|-.++
T Consensus 376 ddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~-- 451 (557)
T KOG3785|consen 376 DDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM-- 451 (557)
T ss_pred HHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH--
Confidence 88888888887 34444455554 47788999999999999998872 12 35667777665 567888888776554
Q ss_pred HHhhC-CCC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 428 LFQIN-SHH-PSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 428 ~~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
++.+ |.+ .......++-|.+++.+--|.+.|+.+...+..|
T Consensus 452 -lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 452 -LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred -HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 4444 222 2334566778889999999999999888766443
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=4.6e-06 Score=73.97 Aligned_cols=166 Identities=11% Similarity=-0.032 Sum_probs=92.1
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLS 342 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 342 (605)
+..++..+...|.+.|..+.|.+-|+... ..+....|....-+|..|++++|...|++....-.-|. ..||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 34445555555555555555555555433 22344555555556666666666666666655322221 245666665
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
+..+.|+.+.|..+|++..+ -.+-.......+.....+.|++..|..+++.. ...++..+.-..+..-...||.+.
T Consensus 148 Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 56666666666666666652 11122344555666666666666666666665 223455555555555566666666
Q ss_pred HHHHHHHHHhhCCC
Q 007396 421 GEIAAKNLFQINSH 434 (605)
Q Consensus 421 a~~~~~~~~~~~~~ 434 (605)
+-+.-.++.+.-|.
T Consensus 226 a~~Y~~qL~r~fP~ 239 (250)
T COG3063 226 AQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHHHhCCC
Confidence 66666666665554
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=4.5e-05 Score=77.15 Aligned_cols=195 Identities=8% Similarity=-0.053 Sum_probs=107.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcchHH-HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH---HH
Q 007396 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGV-EPDNFTFP-ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQN---SL 172 (605)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~l 172 (605)
.|..+...+...|+++++...+....+... .++..... .....+...|+++++...++.+++..+. |...++ .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHH
Confidence 355555566666777777666666554321 11211111 1122344568888888888888776433 333333 12
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh
Q 007396 173 INMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
.......|..+.+.+.++.....+ ...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCH
Confidence 222223455666666665432222 2233444556777888888888888877743 33445555566666666777
Q ss_pred hhHHHHHHHHHHhcCC-ch--HHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 250 DLGKCTHGSLIRNISA-LN--VIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 250 ~~a~~~~~~~~~~~~~-~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
++|...+....+.... ++ ...|..+...+...|++++|..+|++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777766666654321 12 1234455566666666666666666543
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=3e-05 Score=88.96 Aligned_cols=323 Identities=10% Similarity=-0.018 Sum_probs=203.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CCC------hh--HHHHHHHHHHHC
Q 007396 143 KLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD----QKS------VA--SWSAIIAAHASN 210 (605)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~------~~--~~~~li~~~~~~ 210 (605)
..|+++.+...++.+-......+..........+...|++++|...++... ..+ .. ....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345666555555443111111223333445556667899999988887642 111 11 122233456689
Q ss_pred CChhHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHhccCChhhHHHHHHHHHHh----cC-CchHHHHhHHHhHHHhc
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEE----SILVSVLSACTHLGALDLGKCTHGSLIRN----IS-ALNVIVETSLIDMYVKC 281 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~ 281 (605)
|++++|...+++....- -..+. .....+...+...|+++.|...+...... |. .........+...+...
T Consensus 466 g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 99999999999876632 12222 23344555667899999999998887743 21 11234556677788899
Q ss_pred CCHHHHHHHHhccCC-------CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhc
Q 007396 282 GCLEKGLCLFRMMAD-------KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE--GLEPD--DVVYVGVLSACSH 346 (605)
Q Consensus 282 g~~~~A~~~f~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~ 346 (605)
|++++|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876431 11 122344555677789999999999887653 11222 2344445567778
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHHCCC-C-CCH----HHHHHHHHHHHhc
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTVQHY-----GCVVDLMGRAGMLGEALELIQSMPI-Q-QND----VVWRSLLSASKVH 415 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ll~a~~~~ 415 (605)
.|+.++|.+.+.....-.........+ ...+..+...|+.+.|.+++..... . ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875311111111111 1122445568999999999877621 1 111 1244566678889
Q ss_pred CChHHHHHHHHHHHhhCCC------CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 416 HNLEIGEIAAKNLFQINSH------HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|+.++|...++++...... ...++..++.+|.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998875311 23456788889999999999999999988754
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=3.4e-05 Score=79.97 Aligned_cols=299 Identities=13% Similarity=0.037 Sum_probs=162.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC--hhHH-HHHHHHHHHC----
Q 007396 138 FKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS--VASW-SAIIAAHASN---- 210 (605)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~-~~li~~~~~~---- 210 (605)
...+...|++++|++.+..-.+. +.....+.......|.+.|+.++|..++..+..+| -..| ..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34556889999999999775444 33356777888899999999999999999998643 3344 4444444222
Q ss_pred -CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh-hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH
Q 007396 211 -GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL-DLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL 288 (605)
Q Consensus 211 -g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 288 (605)
...+....+|+++... -|.......+.-.+.....+ ..+..+.....+.|+|+ +++.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2567778888888764 35544444333323222222 23455556666777543 5555666665443333333
Q ss_pred HHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 289 CLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV--VYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 289 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
+++...... +...+.+.... ....-.|... ++.-+...|...|+.++|..+.+..+. .
T Consensus 164 ~l~~~~~~~-----------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---h 223 (517)
T PF12569_consen 164 SLVEEYVNS-----------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---H 223 (517)
T ss_pred HHHHHHHHh-----------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---c
Confidence 333222100 00000000000 0000122221 233334455566666666666666652 2
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC--CC------
Q 007396 367 VPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINS--HH------ 435 (605)
Q Consensus 367 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~------ 435 (605)
.|+ ++.|..-...|-+.|++.+|.+.++.. ...+ |..+-+-....+.+.|++++|+.++....+.+- ..
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 343 455666666666666666666666655 2222 333444444455666666666666666655442 10
Q ss_pred -CchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 436 -PSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
......-+.+|.+.|++..|++-+..+.
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0112346677778888777776665554
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=0.00018 Score=74.62 Aligned_cols=305 Identities=17% Similarity=0.078 Sum_probs=168.6
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHH
Q 007396 161 GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESIL 236 (605)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~ 236 (605)
.+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-.... -.|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~-~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS-EQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-cCCCcchHH
Confidence 3456778888888888888888888888887653 234578888888888888888888887655432 2243 3333
Q ss_pred HHHHHHH-hccCChhhHHHHHHHHHHh--c--CCchHHHHhHHHhHHHhcC-----------CHHHHHHHHhccCCC---
Q 007396 237 VSVLSAC-THLGALDLGKCTHGSLIRN--I--SALNVIVETSLIDMYVKCG-----------CLEKGLCLFRMMADK--- 297 (605)
Q Consensus 237 ~~ll~a~-~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~m~~~--- 297 (605)
...-..| .+.+.++++..+-..+++. + -......|-.+.-+|...- ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333444 3455666666655555541 1 0112223333333333211 123444555544322
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC----------
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIV---------- 367 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---------- 367 (605)
|+...-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|+.+.+....++|..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2211111222345556666666666666655444444555444444455555555555444443333320
Q ss_pred --------------------------------------------------------------------------------
Q 007396 368 -------------------------------------------------------------------------------- 367 (605)
Q Consensus 368 -------------------------------------------------------------------------------- 367 (605)
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence
Q ss_pred ---CC--------hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 368 ---PT--------VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 368 ---p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
|+ ...|....+.+.+.+..++|...+.+. .+.|- ...|......+...|+.++|.+.|...+.++|+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 00 112233444455555555555554444 33332 224444445556667777777777777778887
Q ss_pred CCchHHHHHHHHHHcCChhHHHH--HHHHHHhCC
Q 007396 435 HPSDYVLLSNMYARAQRWYDVAK--IRTEMASKG 466 (605)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~ 466 (605)
++.....++.++...|+..-|.. ++..+.+.+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 77777788888887777666665 666666644
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=2.3e-06 Score=93.21 Aligned_cols=201 Identities=10% Similarity=0.020 Sum_probs=170.1
Q ss_pred CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-C-------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 265 ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-C-------QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 265 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
+-+...|-..|......+++++|++++++.... | .-.|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345677888899999999999999999887633 2 347889988888889888999999999873 222357
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC---CHHHHHHHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ---NDVVWRSLLSAS 412 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~a~ 412 (605)
|..|+..|.+.+..++|-++|+.|.++++ -....|...++.+.+.+.-++|.+++++. ..-| ......-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998777 66788999999999999999999999886 2223 334555566666
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
.++||.+.+..+|+.++...|.....|...+++-.+.|..+.+..+|++..+.++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999988764
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=6.5e-05 Score=86.18 Aligned_cols=357 Identities=7% Similarity=-0.111 Sum_probs=218.4
Q ss_pred CCCChHHHHHHHhhcCCCCccc--HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFD--FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIH 154 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 154 (605)
..|++.+|..........+... .......+...|+++.+..+++.+.......+..........+...|+++++...+
T Consensus 353 ~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l 432 (903)
T PRK04841 353 AQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLL 432 (903)
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555554443322111 11112234456777776666666532211122223333344556779999999998
Q ss_pred HHHHHhCCC------Cc--hhHHHHHHHHHHcCCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHHCCChhHHHH
Q 007396 155 GHVFKVGFE------CD--LFVQNSLINMYGKCEKVEFASAIFKQMDQ----KSV----ASWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 155 ~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~ 218 (605)
..+.+.--. +. ......+...+...|++++|...+++..+ .+. ..++.+...+...|++++|..
T Consensus 433 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~ 512 (903)
T PRK04841 433 ARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALA 512 (903)
T ss_pred HHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887654111 11 12223334556789999999998887532 222 245666677888999999999
Q ss_pred HHHHHHhCCC-C-CC--ChhHHHHHHHHHhccCChhhHHHHHHHHHHh----cCC---chHHHHhHHHhHHHhcCCHHHH
Q 007396 219 LFGEMNNEKC-W-RP--EESILVSVLSACTHLGALDLGKCTHGSLIRN----ISA---LNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 219 ~~~~m~~~g~-~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~y~~~g~~~~A 287 (605)
.+.+...... . .+ ...++..+...+...|+++.|...+++.... +.. .....+..+...+...|++++|
T Consensus 513 ~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 513 MMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9988764310 0 11 1234455666778899999999998877643 211 1234455666778888999999
Q ss_pred HHHHhccCCC-----C---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhccCCHHHH
Q 007396 288 LCLFRMMADK-----C---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVY-----VGVLSACSHAGLVNEG 353 (605)
Q Consensus 288 ~~~f~~m~~~-----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~-----~~ll~a~~~~g~~~~a 353 (605)
...+++.... + ...+..+...+...|+.++|...+.+.....-.. ....+ ...+..+...|+.+.|
T Consensus 593 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 672 (903)
T PRK04841 593 EQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAA 672 (903)
T ss_pred HHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHH
Confidence 9988775321 1 2234445667888999999999998885421111 11111 1112344557899999
Q ss_pred HHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCChHHHH
Q 007396 354 LLCFDRMKLEYRIVPT---VQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQND-VVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~a~~~~g~~~~a~ 422 (605)
.+++...... ..... ...+..+..++...|+.++|...+++. +..++. .+...+..++...|+.++|.
T Consensus 673 ~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 673 ANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998776521 11111 111345667788899999999988876 222222 25666667889999999999
Q ss_pred HHHHHHHhhCCC
Q 007396 423 IAAKNLFQINSH 434 (605)
Q Consensus 423 ~~~~~~~~~~~~ 434 (605)
..+.+++++...
T Consensus 752 ~~L~~Al~la~~ 763 (903)
T PRK04841 752 RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHhCc
Confidence 999999988644
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.4e-08 Score=60.14 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=27.8
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 161 GFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=9.8e-07 Score=88.07 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=169.5
Q ss_pred hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe---eeHHHHHHHHHhcCCHHHHHH
Q 007396 244 THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ---LTYSVMISGLAMHGQGKEALS 320 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~ 320 (605)
.+.|++..|.-.|+..++.. +.+...|--|.......++-..|+..+++..+-|+ ...-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677888888888887776 44777888888888888888888888887765544 455556667888888889999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 007396 321 IFSEMLREGLE--------PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALEL 392 (605)
Q Consensus 321 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 392 (605)
.++.-.....+ ++...-.. ..+.....+....++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888653211 00000000 122333345566677777776667678889999999999999999999999
Q ss_pred HHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 393 IQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 393 ~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|+.. .++|+. ..||-|...+....+.++|+..+.+++++.|.-..+...|+-.|...|.+++|.+.|=....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9987 778865 59999999999999999999999999999999888889999999999999999999877654
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.63 E-value=0.0004 Score=70.76 Aligned_cols=410 Identities=13% Similarity=0.053 Sum_probs=246.2
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCc
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEF 112 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 112 (605)
.|...++.++|....+..++..+. +.+.|..+- -++ ...++++|.+.|..... .|...|--+--.-++.|++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~g---l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLG---LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcc-cchhHHHHH---HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 344456677777776666664433 345555544 445 77899999999987643 4566676665556677888
Q ss_pred hHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCchhHHHHHH------HHHHcCCCHHH
Q 007396 113 EEALFLYNEMFERGVEPD-NFTFPALFKACAKLQALKEGMQIHGHVFKVGF-ECDLFVQNSLI------NMYGKCEKVEF 184 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li------~~y~~~g~~~~ 184 (605)
+...+.-.+..+. .|. ...|.....+.--.|+...|..+.+...+.-. .|+...+.-.. ....+.|..++
T Consensus 126 ~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 126 EGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 8888888777775 344 34677777777778999999999999887752 45554443332 33457788899
Q ss_pred HHHHHHhcCCC--C-hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHh-c-cCChhhHHHHHHHH
Q 007396 185 ASAIFKQMDQK--S-VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACT-H-LGALDLGKCTHGSL 259 (605)
Q Consensus 185 A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~-~-~~~~~~a~~~~~~~ 259 (605)
|.+.+..-... | ...-.+-...+.+.++.++|..++..+... .||...|...+..+. + .+..+....++...
T Consensus 204 ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 204 ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 98888765532 2 223334566788999999999999999885 477777766655554 2 33333333555544
Q ss_pred HHhc---CCchHHHHhHHHhHHHhcCCH-HHHHHHHhccCCCC-eeeHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC
Q 007396 260 IRNI---SALNVIVETSLIDMYVKCGCL-EKGLCLFRMMADKC-QLTYSVMISGLAMHGQGKEALSIFSEMLR----EGL 330 (605)
Q Consensus 260 ~~~~---~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~ 330 (605)
.+.- -.|-.... .+++. .++ +..-.++..+.+++ +..+..+...|-.-...+-..++.-.+.. .|.
T Consensus 281 s~~y~r~e~p~Rlpl-svl~~----eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPL-SVLNG----EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred hhcCcccccchhccH-HHhCc----chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 4321 11111111 11111 111 22223333333333 23444444444332222211112222211 111
Q ss_pred ----------CCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCC
Q 007396 331 ----------EPDDV--VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMP 397 (605)
Q Consensus 331 ----------~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (605)
.|... |+..+...+-..|+++.|..+.+... +-.|+ ++.|..=...+...|.+++|..++++..
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34443 44456667788899999999998887 33455 4666666788888999999999998872
Q ss_pred -C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hH--HHHHHHHHHcCChhHHHHHHHHHH
Q 007396 398 -I-QQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS-------DY--VLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 398 -~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~--~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+ .||..+-.--..-..+..+.++|.++.....+.+..-.. .| ..=+.+|.+.|++..|++=|..+.
T Consensus 433 elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 433 ELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2 355544434444556778889998888887776542100 11 223567788888888776555443
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=1.1e-06 Score=84.60 Aligned_cols=149 Identities=10% Similarity=0.025 Sum_probs=113.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH---HHHHHHHHHhcC
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQH---YGCVVDLMGRAG 384 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g 384 (605)
.+...|++++|++++.+- .+.......+..+...++++.|.+.++.|. .+..|... ..+.+..+.-.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCch
Confidence 456679999999988752 345666677889999999999999999998 33444322 223333333345
Q ss_pred CHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh-hHHHHHHHH
Q 007396 385 MLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW-YDVAKIRTE 461 (605)
Q Consensus 385 ~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 461 (605)
.+.+|.-+|+++ ...++..+.+.+..+....|++++|+.++++.++.+|.++.+...++-+..-.|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999999 44577888999999999999999999999999999999999999999999999998 667788888
Q ss_pred HHhC
Q 007396 462 MASK 465 (605)
Q Consensus 462 m~~~ 465 (605)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7763
No 93
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.7e-05 Score=73.19 Aligned_cols=370 Identities=12% Similarity=0.078 Sum_probs=223.4
Q ss_pred CCCChHHHHHHHhhcCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 77 HWGSMDYACSIFRQIDE------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
...++..|+.+++--.. .++..| +...+.+.|++++|+..|..+.+.. .|+...+..+.....-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 67788888888765432 122223 4456778899999999999887754 45555566666555667888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWR 230 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 230 (605)
.++-... ..++-....|++.-.|.|+-++-..+-+.+.... .---++.+..-..-.+++|+++|.+.... .
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n 181 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD---N 181 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 8866543 2233334445566667777776666555554321 11223334333445689999999999875 4
Q ss_pred CChhHHHHHHHHH-hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh--cCCHHHH--HHHHhccC----------
Q 007396 231 PEESILVSVLSAC-THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK--CGCLEKG--LCLFRMMA---------- 295 (605)
Q Consensus 231 p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A--~~~f~~m~---------- 295 (605)
|+-...+.-+..| .+..-++.+.+++.-..+.- +.++...|....-..+ .|+..++ .++-+...
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 7777777666555 66777777888877666653 3344444444433333 2332222 12222221
Q ss_pred CCCee---------------------eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hccCC
Q 007396 296 DKCQL---------------------TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSAC-----SHAGL 349 (605)
Q Consensus 296 ~~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-----~~~g~ 349 (605)
..|.+ .--.++--|.++++.++|..+.+++.- ..|-....-.+..+- .....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 12222 112233447788999999988877642 344443333333221 12223
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007396 350 VNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMP--IQQNDVVWRSLLSASKVHHNLEIGEIAAK 426 (605)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 426 (605)
+.-|.+.|+..- ..+..-| +.--.++...+.-..++++.+-.++.+. +..|...--.+..+....|++.+|+++|-
T Consensus 339 lKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 556677666543 2333322 2223455555666667888888887772 23334444457788899999999999998
Q ss_pred HHHhhCCCCCchHH-HHHHHHHHcCChhHHHHHHHHH
Q 007396 427 NLFQINSHHPSDYV-LLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 427 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 462 (605)
++...+..|..+|. .|+..|.++|+..-|..++-.+
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88777655666664 5788999999999887766433
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=1.4e-05 Score=73.31 Aligned_cols=373 Identities=9% Similarity=-0.003 Sum_probs=215.5
Q ss_pred CCCChHHHHHHHhhcCCC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEP---GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA-LFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~ 152 (605)
+..++++|.+++..-.++ +....+.|...|-...++..|-+.|+++-.. .|...-|.. -...+-+.+.+..|..
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 566778888877665543 4455667777788888888888888888764 344333321 1223345566777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHH--H--HHcCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 153 IHGHVFKVGFECDLFVQNSLIN--M--YGKCEKVEFASAIFKQMD-QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~--~--y~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+...|... ....+..+. + .-..+++..++.++++.+ +.+..+-+.......+.|+++.|++-|+...+-+
T Consensus 100 V~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 100 VAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 77666422 222222111 1 224678888888888888 4555566666666678899999999998877765
Q ss_pred CCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-------------h---------------HHHHhHHHhHHH
Q 007396 228 CWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL-------------N---------------VIVETSLIDMYV 279 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~li~~y~ 279 (605)
+..| ...|+..+. ..+.++.+.|.....+++++|+.. | +..+|.-...+.
T Consensus 175 Gyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 175 GYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 3444 455665554 446688888888888888776421 1 122344444567
Q ss_pred hcCCHHHHHHHHhccCCC-----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADK-----CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGL 354 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 354 (605)
+.|+.+.|.+.+-.|+.+ |++|...+.-. -..+++.+..+-+.-+..... -...||..++-.||+..-++.|-
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHH
Confidence 889999999999999855 56666554322 224445555555555554332 23579999999999999888888
Q ss_pred HHHHHhHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCh---HHHHHHHHHH
Q 007396 355 LCFDRMKLEYRI-VPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQ--NDVVWRSLLSASKVHHNL---EIGEIAAKNL 428 (605)
Q Consensus 355 ~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~---~~a~~~~~~~ 428 (605)
.++.+-.. ... -.+...|+.|=......-..++|.+-++.+...- .......-+.--+..++- ..+.+-+++.
T Consensus 331 DvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~ 409 (459)
T KOG4340|consen 331 DVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDET 409 (459)
T ss_pred HHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 87754321 110 1123334433222233345566655544431000 000011111111111111 1122223333
Q ss_pred HhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 429 FQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+++-. .....-.+.|++..++..+.++|..-.+
T Consensus 410 LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 410 LEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 33211 1334556678888899999999876654
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=7.4e-05 Score=70.06 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=74.5
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhc---cCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRM---MADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL-- 341 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-- 341 (605)
|...+..-..+|...|++..|+.=++. +...++...--+-..+-..|+.+.++...++-.+ +.||.......-
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKK 265 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHH
Confidence 444444445555555555555443332 2233344444444455555555555555555554 445543211100
Q ss_pred -----------HHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HH
Q 007396 342 -----------SACSHAGLVNEGLLCFDRMKLEYRIVPT-----VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DV 403 (605)
Q Consensus 342 -----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~ 403 (605)
......+++.++.+-.+...+ ..|. ...+..+-..+...|++.+|++...+. .+.|| +.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 011122333333333333331 1222 112223334444555566665555444 44444 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
++.--..+|.....++.|+.-++.+.+.++++.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 555555555555556666666666666655543
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.57 E-value=2.6e-05 Score=79.81 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=113.7
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 318 (605)
.+.+......+.+|..+++.+.+... ...-|..+.+.|+..|+++.|+++|-+.. .++-.|..|.+.|++++|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34444555666667766666665432 23345556677777777777777776543 345566677777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCC
Q 007396 319 LSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPI 398 (605)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (605)
.++-.+.. |.......|.+-..-.-..|.+.+|.++|-.+. .|+. -|.+|-+.|..++..++.++-.
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h- 877 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHH- 877 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhC-
Confidence 77665543 233333444444445556677777766654332 2432 4566777777777777776652
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 399 QQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 399 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
|+ ..|...+..-+...|++..|+.-|-+. .-+-.-+++|-..+.|++|.++-+
T Consensus 878 -~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 878 -GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred -hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 22 225555555666667777766655443 234455667777777777766543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.7e-05 Score=74.28 Aligned_cols=370 Identities=11% Similarity=0.050 Sum_probs=218.9
Q ss_pred CCCChHHHHHHHhhcC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQID---EPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~ 152 (605)
..|+++.|..+|-+.. .+|.+.|..-..+|+..|++++|++=-.+-++ +.|+.. .|+-...++.-.|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 7899999999998754 36788899999999999999999876666655 466654 78888888888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHh------cC-CC------ChhHHHHHHHHHHHC---------
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQ------MD-QK------SVASWSAIIAAHASN--------- 210 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~------m~-~~------~~~~~~~li~~~~~~--------- 210 (605)
-|.+-++... .+...++.|.+++... . .+-+.|.. +. .| .-..|..++..+-++
T Consensus 92 ay~~GL~~d~-~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKDP-SNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcCC-chHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9988877753 3677788888887111 0 11111111 00 00 011233333322111
Q ss_pred -CChhHHHHHHHHH-----HhCCC------CCCC---------h-------------hHHHHHHHHHhccCChhhHHHHH
Q 007396 211 -GLWSECLKLFGEM-----NNEKC------WRPE---------E-------------SILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 211 -g~~~~A~~~~~~m-----~~~g~------~~p~---------~-------------~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
.+...|...+... ...|. ..|. . .-...+.++.-+..+++.+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 0111111111100 00000 0110 0 11233444444555555566656
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee----------eHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL----------TYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
....... .++.-++....+|...|.+......-+...+.+-. ....+..+|.+.++++.|+..|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 5555554 34555555666666666665554444333222110 11123334555566666666666655
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHH
Q 007396 327 REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQ-HYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDV 403 (605)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~ 403 (605)
..-..||..+ +....+++....+... -+.|... -.-.=...+.+.|++.+|...+.++ ...| |..
T Consensus 326 te~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 4433433221 1122233333222221 2223221 1111144567789999999999887 4445 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.|....-+|.+.|++..|+.-.+...+++|+....|..-+.++....+|+.|.+.|.+..+.+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888889999999999999999999999988889888888888999999999998887755
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.5e-05 Score=71.74 Aligned_cols=289 Identities=17% Similarity=0.144 Sum_probs=161.8
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHH-HHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSA-IIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~ 207 (605)
.--+.+++.-+.+..+++.+.+++..-.+...+ +....+.|..+|-...++..|...++++.. |...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 334666666666777777777777666555422 555666677777777777777777777654 22222221 23445
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHH
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 287 (605)
-+.+.+.+|+++...|.+. |+...-..-+.+.. .-..+++..+
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~ 131 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAI---------------------------------KYSEGDLPGS 131 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHH---------------------------------hcccccCcch
Confidence 5667777777777766542 22111111111111 1123344444
Q ss_pred HHHHhccC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 007396 288 LCLFRMMA-DKCQLTYSVMISGLAMHGQGKEALSIFSEMLRE-GLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYR 365 (605)
Q Consensus 288 ~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 365 (605)
..+.++.+ +.+..+.+.......+.|++++|.+-|+...+- |..| ...|+..+ +..+.|+.+.|+++..+++ +.|
T Consensus 132 rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIi-eRG 208 (459)
T KOG4340|consen 132 RSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEII-ERG 208 (459)
T ss_pred HHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHH-Hhh
Confidence 44444444 233333333333344455555555555544432 2222 23333332 2223444555555444444 223
Q ss_pred CC-------------CC--------hHHHHHHHH-------HHHhcCCHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q 007396 366 IV-------------PT--------VQHYGCVVD-------LMGRAGMLGEALELIQSMPI----QQNDVVWRSLLSASK 413 (605)
Q Consensus 366 ~~-------------p~--------~~~~~~li~-------~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~a~~ 413 (605)
+. || ..+-+.++. .+.+.|+++.|.+-+..||- ..|++|...+.-. -
T Consensus 209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n 287 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-N 287 (459)
T ss_pred hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-c
Confidence 22 11 122233333 35678999999999999952 3466666554322 3
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
..+++..+.+-++-+++++|-.+.++..++-.|++..-++-|..++.+
T Consensus 288 ~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 456677778888888889988888999999999999999999888754
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.3e-07 Score=58.00 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=27.3
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888874
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00043 Score=73.76 Aligned_cols=256 Identities=12% Similarity=0.121 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 007396 180 EKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 180 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+ .-|+..|..++.++.+.|.+++-..++..+
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik-------adDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK-------ADDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh-------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444555554444443 35799999999999999999988754 246778999999999999999999988888
Q ss_pred HHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-----------------------CeeeHHHHHHHHHhcCCHH
Q 007396 260 IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-----------------------CQLTYSVMISGLAMHGQGK 316 (605)
Q Consensus 260 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------------------~~~~~~~li~~~~~~g~~~ 316 (605)
.+..-+|. +-+.||-+|++.+++.+-++++..-... ++..|..+...+...|+++
T Consensus 1160 Rkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1160 RKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 87766654 4457999999999998877765422111 2234555566666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 317 EALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
.|.+.-++.. +..||-.+-.+|...+.+.-| +|. ..++.....-..-++..|-..|.+++...+++..
T Consensus 1238 ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1238 GAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6665554432 346777777777766554433 232 1223334555667888888888888888888775
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 397 -PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 397 -~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.+. ....|.-|.-.|.+.. .+...+.++-.... ...--+++++..+.-|.+..=++.+..+
T Consensus 1306 LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5432 3345665555555543 33333333322221 1112466777777777777766655443
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=2.3e-05 Score=74.12 Aligned_cols=180 Identities=8% Similarity=-0.009 Sum_probs=117.8
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---e---eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---Q---LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV---- 335 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 335 (605)
.....+..+...|.+.|++++|...|+++...+ . ..|..+..+|.+.|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 345566677777888888888888888765322 1 35566777888888888888888888764 33221
Q ss_pred HHHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Q 007396 336 VYVGVLSACSHA--------GLVNEGLLCFDRMKLEYRIVPTVQ-HYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWR 406 (605)
Q Consensus 336 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 406 (605)
++..+..++... |+.++|.+.|+.+... .|+.. .+..+... .. ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHHHH-----------HHHHH
Confidence 344444444443 6677777777777643 23321 22111111 00 00000 00112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.+...+...|+.+.|...++++.+..|++ +..+..++.+|...|++++|.++++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556788999999999999999987764 467889999999999999999999888754
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=0.00014 Score=74.53 Aligned_cols=254 Identities=11% Similarity=0.112 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHhcCCCChh--HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHH
Q 007396 179 CEKVEFASAIFKQMDQKSVA--SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
...+.+|..+++.+..+++. -|..+..-|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.++-
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHH
Confidence 34444555555544443332 24444455555555555555554321 1233444555555555554443
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-- 334 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 334 (605)
.+. .|.+..+..|-+-..-.-+.|++.+|+++|-.+..|+ ..|..|-++|..++.+.+..+- .||.
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~-----~aiqmydk~~~~ddmirlv~k~-----h~d~l~ 882 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD-----KAIQMYDKHGLDDDMIRLVEKH-----HGDHLH 882 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch-----HHHHHHHhhCcchHHHHHHHHh-----Chhhhh
Confidence 322 2223334444444444555555555555555554443 2355566666666666655543 2332
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCC---CC-HHHHHHHH-
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQ---QN-DVVWRSLL- 409 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~-~~~~~~ll- 409 (605)
.|-..+..-+...|++..|...|-+.. -|.+-+.+|-..+.+++|.++-+.-+-. .. ...|.--+
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 455566667777888888888776554 2567788898899999998887765211 11 12343222
Q ss_pred -----HHHHhcCChHHHHHH-------------HHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 410 -----SASKVHHNLEIGEIA-------------AKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 410 -----~a~~~~g~~~~a~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+-++|-++.|... .+...+ ..-+.....+..-+...|++++|.+-+-+..+.+
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 223455555554433 222222 1234566777778889999999988887776654
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=2.1e-05 Score=71.45 Aligned_cols=118 Identities=5% Similarity=0.012 Sum_probs=92.6
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HhcCC--hHHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSAS-KVHHN--LEIG 421 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~-~~~g~--~~~a 421 (605)
.++.+++...++...+ .-+.+...|..+...|...|++++|.+.|++. ...|+ ...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566677666766663 23456778888888888889999998888887 55564 44777777664 56666 5899
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+++++++.+|+++..+..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999988754
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00086 Score=71.59 Aligned_cols=248 Identities=10% Similarity=0.051 Sum_probs=144.2
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 107 VKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 107 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
..++-+++|..+|+..- .+......++. ..+++++|.++-+.. -.+.+|+.+..+-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHH
Confidence 34455666666666542 23333333333 234555555444333 24567777777777777777777
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH-----HHHH
Q 007396 187 AIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG-----SLIR 261 (605)
Q Consensus 187 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~-----~~~~ 261 (605)
+-|-+. .|+..|..+|....+.|.|++-.+.+...++.. -.|... +.++-||++.+++.+-+++.. .+..
T Consensus 1125 eSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1125 ESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQ 1199 (1666)
T ss_pred HHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHH
Confidence 766443 355667777777777777777777776665554 344433 345666666666554443321 0000
Q ss_pred hc--------------CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 262 NI--------------SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 262 ~~--------------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
.| +-.++.-|.-|...+...|+++.|...-++. .++.+|.-.-.+|...+.+.-| +|-.
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCG 1272 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICG 1272 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcC
Confidence 00 0012334445555555666666665544332 2456888888888776655433 3332
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc
Q 007396 328 EGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRA 383 (605)
Q Consensus 328 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 383 (605)
..+-....-..-++.-|...|-+++-..+++... |+.. ....|+-|.-.|++-
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc
Confidence 2233445567778999999999999998887655 5432 345677777777764
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0014 Score=66.17 Aligned_cols=335 Identities=15% Similarity=0.133 Sum_probs=185.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--c
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNS--LINMYG--K 178 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 178 (605)
++-+.++|++++|+..-.++...+ +-|...+..=+-+..+.+.+++|..+.+ ..+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 345566778888888888887754 2233445555556667777777774332 2221 111111 223343 7
Q ss_pred CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHhccCChhhHHHHH
Q 007396 179 CEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE--ESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
.+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+++ .+| ...-..++.+-.... +
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~--~dd~d~~~r~nl~a~~a~l~----~---- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN--SDDQDEERRANLLAVAAALQ----V---- 161 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHhhh----H----
Confidence 7888888888886665555566666667788899999999999887765 332 222223332221110 0
Q ss_pred HHHHHhcCCchHHHHhH---HHhHHHhcCCHHHHHHHHhcc--------CCCCee----------eHHHHHHHHHhcCCH
Q 007396 257 GSLIRNISALNVIVETS---LIDMYVKCGCLEKGLCLFRMM--------ADKCQL----------TYSVMISGLAMHGQG 315 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~ 315 (605)
..+......| ..+|.. ....+...|++.+|+++++.. ...|.- .---|.-.+...|+-
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111111111 112222 334566788999999888776 211111 122244467788999
Q ss_pred HHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHH--HHHHHHHhHHhc----------CCCCChHHHHHHHHH
Q 007396 316 KEALSIFSEMLREGLEPDDV----VYVGVLSACSHAGLVNE--GLLCFDRMKLEY----------RIVPTVQHYGCVVDL 379 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~~~~~~----------~~~p~~~~~~~li~~ 379 (605)
++|..++...++.. .+|.. .-|.|+ +...-.++-. ++..++...... .-.-...--++++.+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988764 34442 222222 2222222211 222222211100 000011112344444
Q ss_pred HHhcCCHHHHHHHHHHCCC-CCCHHHHHHHHHHH-Hhc-CChHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHcCChhHH
Q 007396 380 MGRAGMLGEALELIQSMPI-QQNDVVWRSLLSAS-KVH-HNLEIGEIAAKNLFQINSHH-PSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~a~-~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 455 (605)
| .+.-+.+.++-...+. .|. ..+.+++..+ ... .....+..++....+..|.+ ..+...++......|+|+.|
T Consensus 319 ~--tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred H--hhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 4 3556778888877753 344 3444454443 222 24677778888887777875 34555677788899999999
Q ss_pred HHHHH
Q 007396 456 AKIRT 460 (605)
Q Consensus 456 ~~~~~ 460 (605)
.+++.
T Consensus 396 ~~il~ 400 (652)
T KOG2376|consen 396 LEILS 400 (652)
T ss_pred HHHHH
Confidence 99999
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=5e-05 Score=71.76 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=126.7
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc--hHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---ee---eH
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL--NVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QL---TY 302 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~---~~ 302 (605)
.....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...|+++.+.+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345677778888899999999999999998765321 23467788999999999999999999886332 22 35
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 007396 303 SVMISGLAMH--------GQGKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHY 373 (605)
Q Consensus 303 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 373 (605)
..+..++.+. |+.++|.+.|+++.+. .|+.. ....+... .. . ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HHH
Confidence 5555566554 7889999999999874 45442 22111111 00 0 00000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM----PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
..+...|.+.|++++|...+++. |-.|. ...|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788999999999988887 22332 45888899999999999999998888876654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=1.7e-05 Score=68.16 Aligned_cols=121 Identities=9% Similarity=0.004 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC
Q 007396 320 SIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI 398 (605)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 398 (605)
.+|++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 34443 34455666777777777777777762 12235666777777777777777777777776 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 399 QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 399 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
.| +...|..+..++...|+.++|+..++++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 4456777777777777777777777777777777777665555443
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.00012 Score=80.39 Aligned_cols=228 Identities=8% Similarity=0.060 Sum_probs=166.1
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhc-C---CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-C-eeeHHH
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNI-S---ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-C-QLTYSV 304 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~~ 304 (605)
-....|...|.-..+.++++.|+++.+++++.= + +.-..+|.+++++-..-|.-+...++|++..+- | ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 345667777777788888888888888877531 1 223467888888888888888888999888754 3 356888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHH
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT---VQHYGCVVDLMG 381 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~ 381 (605)
|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+ .-|. .....-.+++-.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHh
Confidence 888899999999999999999875 444557888888888888888899999888874 2343 445566677778
Q ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCc-hHHHHHHHHHHcCChhHHH
Q 007396 382 RAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--HPS-DYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a~ 456 (605)
+.|+.+.+..+|+.. .-.| ....|+.++..-.++|+.+.++.+|+++..+... ... .|.-.+..--..|+-+.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 889999999999887 2223 4558999999999999999999999999887632 332 3334444334446655555
Q ss_pred HHHHHH
Q 007396 457 KIRTEM 462 (605)
Q Consensus 457 ~~~~~m 462 (605)
.+-.+.
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 444443
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=1.6e-05 Score=68.36 Aligned_cols=95 Identities=6% Similarity=-0.153 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
.+..+...+.+.|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|.++..+..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4556788889999999999999987 5556 4568999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 007396 450 QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 450 g~~~~a~~~~~~m~~~~ 466 (605)
|+.++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998755
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.0017 Score=67.99 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=98.8
Q ss_pred hhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-C--------CCCCcc
Q 007396 63 PFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFER-G--------VEPDNF 132 (605)
Q Consensus 63 ~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~~ 132 (605)
..+--+++. ..+| .-|++|.|.+-..-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .
T Consensus 726 ~~TRkaml~-FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 726 ESTRKAMLD-FSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred HHHHHhhhc-eeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 333344441 2677 9999999988777664 4567999999999999998888777776432 1 1122 2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHCC
Q 007396 133 TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS-VASWSAIIAAHASNG 211 (605)
Q Consensus 133 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g 211 (605)
+=.-+.-.....|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-..-. -.||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22222223457799999999999876553 33456777899999998865432211 125555555566678
Q ss_pred ChhHHHHHHHHH
Q 007396 212 LWSECLKLFGEM 223 (605)
Q Consensus 212 ~~~~A~~~~~~m 223 (605)
+.+.|++.|++.
T Consensus 873 Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 873 DIEAALEYYEKA 884 (1416)
T ss_pred cHHHHHHHHHhc
Confidence 888888888764
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=5.8e-05 Score=77.76 Aligned_cols=219 Identities=14% Similarity=0.113 Sum_probs=169.3
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
+++|--..-..+...+.++|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 445556666788899999999999999999875 788899999999999999999988877 5788899998888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 420 (605)
..-...-+++|.++++....+. -..+.....+.++++++.+.|+.- .+.|- ..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8877778899999988765321 111122233468899999988764 55553 4588888888899999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYE 500 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (605)
|.+.|.....++|++...++.+..+|.+.|+-.+|...+++..+-+.. +|.-+.|-.+ ++-+ -++.+++.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENyml--vsvd--vge~eda~~ 608 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYML--VSVD--VGEFEDAIK 608 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhh--hhhh--cccHHHHHH
Confidence 999999999999999999999999999999999999999999887743 3554444222 2222 245566665
Q ss_pred HHHHH
Q 007396 501 MIHQM 505 (605)
Q Consensus 501 ~l~~l 505 (605)
...++
T Consensus 609 A~~rl 613 (777)
T KOG1128|consen 609 AYHRL 613 (777)
T ss_pred HHHHH
Confidence 55554
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.30 E-value=0.0018 Score=61.03 Aligned_cols=300 Identities=11% Similarity=0.044 Sum_probs=187.4
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCcchHH-HHHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLI---RGFVKEVEFEEALFLYNEMFERGVEPDNFTFP-ALFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~ 152 (605)
..|++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ .+||-..-. .-...+.+.|.+++|..
T Consensus 50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHH
Confidence 566777777777777666666666654 356666777777766666665 356532111 11123456677777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE 232 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~ 232 (605)
-|+.+++.... .. ....++.+.-..++-+.+ ...+..+...|+...|+.....+.+.. +.|
T Consensus 128 DF~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wd 188 (504)
T KOG0624|consen 128 DFDQVLQHEPS--NG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ--PWD 188 (504)
T ss_pred HHHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC--cch
Confidence 77777665422 11 011112221112221111 123444556788888888888887753 556
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee------eHHHH-
Q 007396 233 ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL------TYSVM- 305 (605)
Q Consensus 233 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~------~~~~l- 305 (605)
...+..-..+|...|.+..|..=+..+.+..-+ +....--+-..+-+.|+.+.++...++..+-|+. .|-.+
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 777777777778888888777666666665533 4444445667777888888888888877654432 12211
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHH
Q 007396 306 --------ISGLAMHGQGKEALSIFSEMLREGLEPDDV---VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHY 373 (605)
Q Consensus 306 --------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 373 (605)
+......+++.++++..+...+....-..+ .+..+-.++...|.+.+|.+.-.+.. .+.|+ +.++
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l 344 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHH
Confidence 123456788888888888877643321223 34445566778899999999888887 55665 7888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQN 401 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 401 (605)
.--..+|.-...+++|..-|+.. ...++
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 88888999888999999999887 44443
No 113
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00028 Score=70.38 Aligned_cols=345 Identities=12% Similarity=0.041 Sum_probs=202.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHcCCCH
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECD-LFVQNSLINMYGKCEKV 182 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 182 (605)
.+....|+++.|+.+|-+..... ++|...|+.-..+++..|++++|.+=-.+.++.. |+ ..-|+.+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 45567899999999999988765 4478889999999999999999887666666554 44 45688888888888999
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHH--HHhCCCCCCCh--------hHHHHHHHHHhccC--
Q 007396 183 EFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGE--MNNEKCWRPEE--------SILVSVLSACTHLG-- 247 (605)
Q Consensus 183 ~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~g~~~p~~--------~t~~~ll~a~~~~~-- 247 (605)
++|...|.+-.+. |...++-+..++.-.. .+.+.|.. |.. + +.-++ .+|..++...-+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~-~-l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHE-K-LANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHH-H-hhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999876543 4556776776662110 01111110 000 0 01111 12222222221100
Q ss_pred -----ChhhHHHHHHHHHH--------h-------cCCc----------------------hHHHHhHHHhHHHhcCCHH
Q 007396 248 -----ALDLGKCTHGSLIR--------N-------ISAL----------------------NVIVETSLIDMYVKCGCLE 285 (605)
Q Consensus 248 -----~~~~a~~~~~~~~~--------~-------~~~~----------------------~~~~~~~li~~y~~~g~~~ 285 (605)
+.....+.+..+.. . +..| -..-...+.++.-+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 00000111110000 0 0000 0112344555555666666
Q ss_pred HHHHHHhccCCC--CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CH----HHHHHHHHHHhccCCHHHHHHHH
Q 007396 286 KGLCLFRMMADK--CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP--DD----VVYVGVLSACSHAGLVNEGLLCF 357 (605)
Q Consensus 286 ~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~----~t~~~ll~a~~~~g~~~~a~~~~ 357 (605)
.|.+-++....- ++.-++....+|...|.+.+....-....+.|..- |. ..+..+..++.+.++.+.+..+|
T Consensus 242 ~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 242 TAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 666666654432 23334555566777777777666666655544321 10 12222334566667777888877
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
.+...++. .|+ .+.+....+++....+.. -+.|+.. --..-...+.+.|++..|...+.++++.+|+|
T Consensus 322 ~kaLte~R-t~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 322 QKALTEHR-TPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHHhhhhc-CHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 77664322 222 223333444444444443 2344432 22333566889999999999999999999999
Q ss_pred CchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 436 PSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+..|...+-+|.+.|.+..|.+=-+...+.+
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999998777666653
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00013 Score=75.33 Aligned_cols=216 Identities=11% Similarity=0.063 Sum_probs=170.0
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHH
Q 007396 162 FECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLS 241 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~ 241 (605)
++|--.....+...+..+|-...|..+|+++ ..|.-+|-.|...|+..+|..+..+-.+ . +||...|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-K--DPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-C--CCcchhHHHhhh
Confidence 3444456667788899999999999999986 5788899999999999999999988777 3 799999999998
Q ss_pred HHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHH
Q 007396 242 ACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 242 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 318 (605)
...+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+-+ ..+|-....+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 888887788888887765432 11222222334788999999998655443 45788888888889999999
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 319 LSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 319 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
.+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+.. +.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999988876 56766 579999999999999999999999888 455 455666777777788889999999988877
No 115
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.00037 Score=68.16 Aligned_cols=177 Identities=13% Similarity=0.043 Sum_probs=102.3
Q ss_pred HHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 284 LEKGLCLFRMMADK---CQLTYSVMISGLAMHGQG--KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 284 ~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
+++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+... -|..+|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555544322 233444443333344432 455666666665321 134556655556666666777777776
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhc---CC----HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHH
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRA---GM----LGEALELIQSM-PIQQ-NDVVWRSLLSASKVH----HNLEIGEIAA 425 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~----g~~~~a~~~~ 425 (605)
++.+. . .-+...|+.....+.+. |. .+++.++..++ ...| |...|+-+...+... ++..+|...+
T Consensus 167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66632 1 22334444443333332 22 23556665443 5555 445888888888763 3456688888
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHcC------------------ChhHHHHHHHHHH
Q 007396 426 KNLFQINSHHPSDYVLLSNMYARAQ------------------RWYDVAKIRTEMA 463 (605)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 463 (605)
.++.+.+|.++.....|++.|+... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888888889999998632 2366888888774
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.26 E-value=0.00018 Score=76.54 Aligned_cols=371 Identities=11% Similarity=0.017 Sum_probs=202.8
Q ss_pred Ccc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDNFTFPALFKACAKLQALK 148 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~ 148 (605)
..| ...++..|.+.|+...+ .+..+|..+...|++..+++.|..+.-..-+.. ...-...|..+.-.+...++..
T Consensus 500 ~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h 579 (1238)
T KOG1127|consen 500 QIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLH 579 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchh
Confidence 666 55577788888887665 456678888888888888888887732221110 0000111222233345567777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHH---HHHHHHHCCChhHHHHHHHHHHh
Q 007396 149 EGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSA---IIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 149 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
.+..-|+...+..+. |...|..|..+|..+|++..|.++|++...-++.+|-. ....-+..|.+.+|+..+.....
T Consensus 580 ~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 580 GAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 787778777777644 77888888888888888888888887776544443322 22334567888888888877654
Q ss_pred CCC-----CCCChhHHHHHHHHHhccCChhhHHHHHHHH-------HHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 226 EKC-----WRPEESILVSVLSACTHLGALDLGKCTHGSL-------IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 226 ~g~-----~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
... ..--..++..+...+...|-...+..+++.. .......+...|..+ .+|...|-.
T Consensus 659 ~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q 728 (1238)
T KOG1127|consen 659 AFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQ 728 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHH
Confidence 210 0001122222222222223222232222222 222212222222222 223333433
Q ss_pred cCCCCee--eHHHHHHH-HHhcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------c-CCHHHHHHH
Q 007396 294 MADKCQL--TYSVMISG-LAMHGQG---K---EALSIFSEMLREGLEPDDVVYVGVLSACSH-------A-GLVNEGLLC 356 (605)
Q Consensus 294 m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~-g~~~~a~~~ 356 (605)
.. ++.+ .+..++.. +-..+.. + -+.+.+-.-++ ...+..+|..|...|.+ . .+...|...
T Consensus 729 ~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c 805 (1238)
T KOG1127|consen 729 EE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRC 805 (1238)
T ss_pred hc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHH
Confidence 33 3311 11111111 1111111 1 01111111111 11123344444433322 1 223466667
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 357 FDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+...++ -...+...|+.|--+ +..|++.-|.-.|-+- -..| ...+|..+.-.|..+.|++.|...|.+...++|.
T Consensus 806 ~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 806 CKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred HHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 766663 122344555555444 6667777777766544 2334 4568988888899999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 435 HPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
|...+.-........|+.-++..+|..
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888887777777778888888888776
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=8.2e-05 Score=74.73 Aligned_cols=223 Identities=12% Similarity=0.042 Sum_probs=166.3
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHH
Q 007396 206 AHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLE 285 (605)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 285 (605)
-+.++|+..+|.-.|+...+.. +-+...|..|....+..++-..|...+.+..+.. +-|..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3567888888888888887765 4566777777777777778788888888887776 447777888888888888888
Q ss_pred HHHHHHhccCCCC-eeeHHHHH---------HHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007396 286 KGLCLFRMMADKC-QLTYSVMI---------SGLAMHGQGKEALSIFSEMLR-EGLEPDDVVYVGVLSACSHAGLVNEGL 354 (605)
Q Consensus 286 ~A~~~f~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~ 354 (605)
.|...++.-.... ...|...- ..+.......+..++|-++.. .+.++|......|.-.|.-.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887652110 00000000 122222334456666666654 454467777777777788899999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 355 LCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 355 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
..|+.+. .+.| |...||.|...++...+.++|...|++. .++|+-+ ++..|.-+|...|.+++|...|=.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999998 4456 5678999999999999999999999998 8889865 8888999999999999999999888877
Q ss_pred CCC
Q 007396 432 NSH 434 (605)
Q Consensus 432 ~~~ 434 (605)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 543
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.9e-06 Score=53.73 Aligned_cols=35 Identities=54% Similarity=0.851 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN 131 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 131 (605)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.3e-06 Score=52.56 Aligned_cols=34 Identities=50% Similarity=0.914 Sum_probs=31.2
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD 333 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (605)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=0.00014 Score=78.50 Aligned_cols=139 Identities=8% Similarity=0.026 Sum_probs=112.3
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCV 376 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 376 (605)
++..+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 356777788888999999999999999987 678764 666777888999999999999998873 333356777888
Q ss_pred HHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 377 VDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.++|...|+++.+...+-...|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88899999999999999998 23444 568889999999999999999999999888655444443
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=6.1e-05 Score=63.76 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
....-.+...+...|++++|..+|+-+ .+.|. ..-|-.|..+|...|++++|+..+.++..++|+++.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445566677899999999999988 45564 4588999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 007396 448 RAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~ 464 (605)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998875
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00026 Score=64.32 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=115.7
Q ss_pred HHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 353 (605)
-+-.|.+.|+++......+.+..+. ..|...++.+++...+++..+.. ..|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4557888888888766654433221 01223566788888888877742 34567888888899999999999
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHH-HHhcCC--HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 007396 354 LLCFDRMKLEYRIVP-TVQHYGCVVDL-MGRAGM--LGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~ 427 (605)
...|++..+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...|+ ...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999883 334 57778888876 467777 59999999998 55664 55888888899999999999999999
Q ss_pred HHhhCCCCCchH
Q 007396 428 LFQINSHHPSDY 439 (605)
Q Consensus 428 ~~~~~~~~~~~~ 439 (605)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998866544
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.00054 Score=74.77 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=130.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCC
Q 007396 133 TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGL 212 (605)
Q Consensus 133 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 212 (605)
.+..|+..+...+++++|.++.+...+..+. ....|-.+...|...++.+++..+ .++.......+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 4555566665666666666666654444321 122222222244455554443333 23333334444
Q ss_pred hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 213 WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 213 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
+.-+..+...|... .-+...+-.+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.
T Consensus 99 ~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 WAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred hhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 43333444444442 2344466666677777777777777777777766 55788888888888888 8888888776
Q ss_pred ccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH
Q 007396 293 MMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQH 372 (605)
Q Consensus 293 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 372 (605)
+.. ..|...+++.++.++|.++... .|+...+. .++.+.+....+..--..+
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f---------------~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFF---------------LRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHH---------------HHHHHHHHhhhccchhHHH
Confidence 553 3367777888888888888773 44433221 1222222222222223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
+--+..-|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 445555666667777777777766 4444 3335555555553
No 124
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=0.0014 Score=64.10 Aligned_cols=221 Identities=13% Similarity=0.007 Sum_probs=104.4
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCCChh-HHHHHHHHHhccC-ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCH
Q 007396 207 HASNGLWSECLKLFGEMNNEKCWRPEES-ILVSVLSACTHLG-ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCL 284 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 284 (605)
+...++.++|+.++.++.+. .|+.. .+..--.++...+ .++++...++.+.+.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33444555555555555542 23222 2222222223333 3455555555555443 22333444443344444432
Q ss_pred --HHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CC----HHH
Q 007396 285 --EKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA---GL----VNE 352 (605)
Q Consensus 285 --~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~ 352 (605)
+++..+++.+.+ +|..+|+...-.+...|+++++++.+.++++.+.. |...|+.....+.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 445555555442 23455666666666666666777777766664433 233343333333332 11 234
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC----------
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA----GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHH---------- 416 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g---------- 416 (605)
...+...+.. -.+-|...|+.+..+|... ++..+|.+++.+. ...| +......|+..|....
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 5555544442 1122445565555555552 2334566666554 3333 3335555666554321
Q ss_pred --------ChHHHHHHHHHHHhhCCC
Q 007396 417 --------NLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 417 --------~~~~a~~~~~~~~~~~~~ 434 (605)
..+.|..+++.+.+.+|-
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcH
Confidence 235677777776555553
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00038 Score=63.39 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHH
Q 007396 331 EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSL 408 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 408 (605)
.|+......+-.++...|+-+....+...... .-..+.......+....+.|++.+|...|.+. +-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433224455566666777777666665542 22334455555777777888888888888777 334456678777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+|.+.|+.+.|...+.+.+++.|.++..++.|+..|.-.|+.++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7788888888888888888888888888888888888888888888888877766543
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=5.1e-06 Score=51.31 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP 129 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 129 (605)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.06 E-value=0.028 Score=60.08 Aligned_cols=379 Identities=14% Similarity=0.126 Sum_probs=180.1
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI 153 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (605)
+.|+.++|..+++.... .|..|...+-..|...++.++|..+|+..... -|+......+..++.+.+++.+-.++
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655432 24555666666666666667777776666553 35555555566666666655554433
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCCC----------HHHHHHHHHhcCCCC-h----hHHHHHHHHHHHCCChhHHHH
Q 007396 154 HGHVFKVGFECDLFVQNSLINMYGKCEK----------VEFASAIFKQMDQKS-V----ASWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~m~~~~-~----~~~~~li~~~~~~g~~~~A~~ 218 (605)
--++-+. ++.+...+=++++.+...-. +.-|.+.++.+.+.+ . .-.-.-....-..|.+++|++
T Consensus 133 a~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~ 211 (932)
T KOG2053|consen 133 ALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE 211 (932)
T ss_pred HHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH
Confidence 3333332 22344444445555443211 233445555544332 1 001111122334566666666
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----------------cC
Q 007396 219 LFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----------------CG 282 (605)
Q Consensus 219 ~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----------------~g 282 (605)
++..=.......-+...-+--+.-+...+++.+..++-.++...|.+. |...++.+.+ .+
T Consensus 212 ~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~ 287 (932)
T KOG2053|consen 212 FLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSK 287 (932)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 663322221022233333344555556666666666666666665332 3332222221 11
Q ss_pred CHHHHHHHHhccCCC-CeeeHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 283 CLEKGLCLFRMMADK-CQLTYSVMISGLA---MHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 283 ~~~~A~~~f~~m~~~-~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
.++...+..++.... .--.|-+-+.++. .-|+.+++...|-+- -|-+| .|..=+..|...=..++-..++.
T Consensus 288 ~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~ 362 (932)
T KOG2053|consen 288 SLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMS 362 (932)
T ss_pred hHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHH
Confidence 122222222111111 1112222222222 335555544433222 12232 11112222222222333333333
Q ss_pred HhHHhcCCCCChH-------HHHHHHHHHHhcCCH-----HHHHHHHHHC------C------CCCCH---------HHH
Q 007396 359 RMKLEYRIVPTVQ-------HYGCVVDLMGRAGML-----GEALELIQSM------P------IQQND---------VVW 405 (605)
Q Consensus 359 ~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~m------~------~~p~~---------~~~ 405 (605)
.... ..++.. -+.+.+....-.|.+ +.-..++.+. + .-|+. .+.
T Consensus 363 ~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 363 KLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred Hhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 3321 111111 122333332233321 1222222221 1 11221 145
Q ss_pred HHHHHHHHhcCChH---HHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 007396 406 RSLLSASKVHHNLE---IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQS 470 (605)
Q Consensus 406 ~~ll~a~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 470 (605)
+.|+..|++.++.. +|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+.-+.|..+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 67778888887754 567777777788888888888999999999999999999998877777654
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00041 Score=63.15 Aligned_cols=152 Identities=11% Similarity=0.089 Sum_probs=93.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 384 (605)
.-..+...|+-+....+..+.... -.-|..............|++.+|...|++... .-++|...|+.+.-.|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 444555566666666555554321 111223333455666666777777777766652 44556677777777777777
Q ss_pred CHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 385 MLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 385 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
++++|..-|.+. .+.|+ ....+.|.-.+.-.|+.+.|+.++.......+.++..-..|..+....|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777776666555 33443 3456666666677777777777777776666666666666777777777777776554
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=7.1e-05 Score=63.73 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...+++..+.+|.++..+..++..|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345556667777888888888888776 4344 45577777778888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.++...+.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8999999988888877654
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00035 Score=69.79 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=101.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455677777888999999999999843 254 4556788888888888999988887 3344 4556666667788
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
..++.+.|+.+++++.+..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.1e-05 Score=49.82 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=26.7
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEP 332 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (605)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.00072 Score=66.95 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=80.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a 421 (605)
....|..++|+..++.+.. ..+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456777777777777663 33344555566667777777777777777776 45565 34666666777777777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+..++.....+|+++..|..|..+|...|+..++...+.++.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 777777777777777777777777777777777666665543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.005 Score=61.23 Aligned_cols=167 Identities=10% Similarity=-0.034 Sum_probs=84.7
Q ss_pred CCCChHHHHHHHhhcCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 77 HWGSMDYACSIFRQIDE------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
-..++.+++..-+.++. |+...+...+.+......-..+-.++. +... ..-...-|...+.. ...|+++.|
T Consensus 249 p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~~~-~~~~~~d~A 325 (484)
T COG4783 249 PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRALQT-YLAGQYDEA 325 (484)
T ss_pred chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHHHH-HHhcccchH
Confidence 34566777777777765 233334444444333322222222222 2221 01112224433332 245667777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KS-VASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+..++.+++.-+ -|+.......+.+.+.++.++|.+.|+.+.. |+ ...+-.+..+|.+.|++++|+.+++......
T Consensus 326 ~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 326 LKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 777776665532 2555555566666666666666666666653 22 3345555666666666666666666665543
Q ss_pred CCCCChhHHHHHHHHHhccCCh
Q 007396 228 CWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
+-|...|..+..+|...|+.
T Consensus 405 --p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 405 --PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred --CCCchHHHHHHHHHHHhCch
Confidence 33444444444444444433
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.0091 Score=62.80 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=75.5
Q ss_pred chhhccccccccCcc-CCCChHHHHHHHhhcCC-------------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007396 62 NPFCASNLVATCALS-HWGSMDYACSIFRQIDE-------------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGV 127 (605)
Q Consensus 62 ~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~-------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 127 (605)
+..+|..+. .|+ +..++|-|.-.+..|.. ++ ..=....-.-.+.|..++|+.+|++-.+
T Consensus 756 S~~vW~nmA---~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 756 SDSVWDNMA---SMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhHHHHHHH---HHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 456778888 899 98889888877777753 21 1111111223456889999999998876
Q ss_pred CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 128 EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
|..+=+.|-..|.+++|.++-+.=-+..+. .+|..-..-+-..++.+.|++.|++..
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 334445566779999998876543222222 344444455556788888888887764
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.0018 Score=70.03 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=96.1
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
++..+-.|.....+.|.+++|..+++...+ +.|| ......+..++.+.+.+++|....+...+.. +.+....+.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 466677777777888888888888888777 4555 4455666677777777777777777777765 3355666667
Q ss_pred HhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL 341 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (605)
..++.+.|++++|..+|++...++ ..+|.....++...|+.++|...|++..+. ..|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 777777777777777777766433 345666666777777777777777777653 344445555544
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00034 Score=69.83 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccC
Q 007396 168 VQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLG 247 (605)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~ 247 (605)
...+|+..+...++++.|.++|+++.+.++..+..++..+...++..+|++++.+..... +-|...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcC
Confidence 344566667778899999999999988777777778888888888899999999888653 445555555556677778
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 248 ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
+++.|..+.+++.+.. +.+-.+|..|...|.+.|+++.|+..++.++
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888887765 3455677778888888888888887777765
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.84 E-value=0.0034 Score=67.31 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=56.8
Q ss_pred HHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSM-PIQ-QNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.|...+++. ... .+...|+.|.-. ...|++.-+...|=+....+|.+..+|..+.-.+....+++.|...|......
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 455556554 222 345577766555 66678888888888888888888888888888888888888888888877764
Q ss_pred C
Q 007396 466 G 466 (605)
Q Consensus 466 ~ 466 (605)
.
T Consensus 880 d 880 (1238)
T KOG1127|consen 880 D 880 (1238)
T ss_pred C
Confidence 4
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.015 Score=53.34 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=97.8
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD 334 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 334 (605)
+.+.+.......+......-...|.+.|++++|++.......-+....| ...+.+..+.+-|.+.+++|++- .+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3344444433444344444445677777888887777763322322222 23355666777777777777752 244
Q ss_pred HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHH
Q 007396 335 VVYVGVLSACS----HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSL 408 (605)
Q Consensus 335 ~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 408 (605)
.|.+-|..++. ..+.+.+|.-+|++|.. ...|++.+.+.+.......|++++|..++++. ....+..+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 56665555543 33456777777777763 34566666666666666777777777777665 222233444444
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhhCCCCC
Q 007396 409 LSASKVHH-NLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 409 l~a~~~~g-~~~~a~~~~~~~~~~~~~~~ 436 (605)
+..-...| +.+.-.+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 44333333 33444556666666666543
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.3e-05 Score=47.13 Aligned_cols=31 Identities=48% Similarity=0.839 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGV 127 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 127 (605)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999998888764
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=3.2e-05 Score=46.48 Aligned_cols=31 Identities=45% Similarity=0.725 Sum_probs=24.7
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.0005 Score=53.61 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
+..+...+.+.|++++|...+++. ...|+ ...+..+...+...++++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 33443 3567777778888899999999999999888888888888899999999
Q ss_pred ChhHHHHHHHHHHhC
Q 007396 451 RWYDVAKIRTEMASK 465 (605)
Q Consensus 451 ~~~~a~~~~~~m~~~ 465 (605)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888877653
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.004 Score=56.94 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=148.8
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
|+-+.-.|.+..++..-...... +-+...-.-+-.+|...|...... ..+.... .+.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcch
Confidence 34455667888877666554332 234444455556666666544322 1222222 2223333323332333344
Q ss_pred HHHHH-HHHhccCCCCe---eeHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 284 LEKGL-CLFRMMADKCQ---LTYS-VMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 284 ~~~A~-~~f~~m~~~~~---~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
.++-. ++.+.+..+.. .+|. .-...|+..|++++|++...... ..+....+ ...+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33332 33333333221 1222 22345888999999999887621 22222222 233456678889999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHH----hcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMG----RAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
.|.. -.+..+.+.|..++. -.+.+.+|.-+|++| ...|+..+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 8873 134455565665554 346788999999999 367888899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCChhHHH-HHHHHHHh
Q 007396 433 SHHPSDYVLLSNMYARAQRWYDVA-KIRTEMAS 464 (605)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 464 (605)
++++.+...++-.-.-.|+-.++. +.+.+.+.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999888888887777788765543 44444443
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.68 E-value=0.0019 Score=54.86 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=86.0
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC
Q 007396 321 IFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI 398 (605)
Q Consensus 321 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 398 (605)
.+++... ..|+. .....+...+...|++++|...|+.+.. ..+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 44543 3455666777888999999999988874 22346778888888999999999999988877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 399 QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 399 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.| +...+..+...+...|+.+.|...+++..+.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 4557777888889999999999999999999987654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.0017 Score=55.93 Aligned_cols=114 Identities=10% Similarity=0.050 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~ 420 (605)
.++...+...++.+..+++-.| .....-.+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666664332221 1223333445566667777777766665 112332 133344555666777777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
|+..++... ..+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777765522 1222445566777777777777777777764
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.008 Score=54.58 Aligned_cols=163 Identities=14% Similarity=0.131 Sum_probs=112.2
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVM---ISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA 347 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (605)
|..++-+...+|+.+.|...++.+..+=+-++... ..-+-..|++++|+++++.+.+.. +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 44455555667777777777776543222222111 112445788999999999998865 44556776655555666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHH---HhcCChHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSAS---KVHHNLEIGE 422 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~---~~~g~~~~a~ 422 (605)
|..-+|.+-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|... .+..+...+ ....+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788887777774 56678999999999999999999999999998 4455433 444554443 3345788899
Q ss_pred HHHHHHHhhCCCCC
Q 007396 423 IAAKNLFQINSHHP 436 (605)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (605)
..+++.+++.|.+.
T Consensus 212 kyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 212 KYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHhChHhH
Confidence 99999999988544
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=8e-05 Score=57.30 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 383 AGMLGEALELIQSM-PIQQ---NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666677766666 2222 344555567777777777777777777 555666656666778888888888888887
Q ss_pred HHH
Q 007396 459 RTE 461 (605)
Q Consensus 459 ~~~ 461 (605)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.62 E-value=0.1 Score=52.85 Aligned_cols=337 Identities=9% Similarity=0.037 Sum_probs=198.1
Q ss_pred CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHH
Q 007396 128 EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIA 205 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~ 205 (605)
+-|..+|..||+-+... ..++++..+++++..- +.....|..-|..-.+..+++..+++|.+... -++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44778999999977655 9999999999998663 44678899999999999999999999998764 47778888776
Q ss_pred HHHH-CCChh----HHHHHHHHH-HhCCCCCCChh----HHHHHHHHHhccC------ChhhHHHHHHHHHHhcCCchHH
Q 007396 206 AHAS-NGLWS----ECLKLFGEM-NNEKCWRPEES----ILVSVLSACTHLG------ALDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 206 ~~~~-~g~~~----~A~~~~~~m-~~~g~~~p~~~----t~~~ll~a~~~~~------~~~~a~~~~~~~~~~~~~~~~~ 269 (605)
---+ +|+.. ...+.|+-. .+.| +.+-.. .|...+...-..| +++..++++..++...+..=..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 3322 23332 233444433 3344 444332 2334444433344 4556677777777655443344
Q ss_pred HHhHHHhHH-------------HhcCCHHHHHHHHhccC------CCCee---------------eHHHHHHH-------
Q 007396 270 VETSLIDMY-------------VKCGCLEKGLCLFRMMA------DKCQL---------------TYSVMISG------- 308 (605)
Q Consensus 270 ~~~~li~~y-------------~~~g~~~~A~~~f~~m~------~~~~~---------------~~~~li~~------- 308 (605)
.|+-....- -+...+..|.+++++.. .++.. .|-.+|.-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 453221110 11223455666665442 11111 13222210
Q ss_pred ------------------------------------------HHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 007396 309 ------------------------------------------LAMHGQ-------GKEALSIFSEMLREGLEPDDVVYVG 339 (605)
Q Consensus 309 ------------------------------------------~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (605)
+...|+ -+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 2233333333322111112222222
Q ss_pred HHHHHh---ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCC-CHHHHHHHHHHH
Q 007396 340 VLSACS---HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 340 ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~a~ 412 (605)
+..--- .....+....+++++.......|+ .+|.+++..-.|..-+..|..+|.+. +..+ ++.+.++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 211100 001234444555555544344444 35677788888888899999999888 3334 566777887766
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
+ .+|.+.|.++|+--++.-++++..-...++-+...++-..+..+|++...+++.+
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 5 4678889999999888888777766677788888888889999999988875543
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.0035 Score=53.99 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=86.1
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-c---hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch--hHHHH
Q 007396 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN-F---TFPALFKACAKLQALKEGMQIHGHVFKVGFECDL--FVQNS 171 (605)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~ 171 (605)
.|..++..+ ..++...+...++.+.... |+. + ..-.+...+...|++++|...|+.+......++. ...-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 345555555 4778888888888888763 333 2 2233445667789999999999998887643332 34445
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQK--SVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
|...+...|++++|+..++....+ ....+......|.+.|++++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888889999999998776543 2345666777888899999998888753
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.60 E-value=0.0042 Score=68.04 Aligned_cols=211 Identities=10% Similarity=0.044 Sum_probs=133.7
Q ss_pred hhhccccccccCcc-CCCChHHHHHHHhhcCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCC---------
Q 007396 63 PFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEP--------- 129 (605)
Q Consensus 63 ~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--------- 129 (605)
...+-.|+ ..| ..+++++|.++.+...+ |+... |-.+...+.+.++..++..+ .+... ...
T Consensus 31 ~~a~~~Li---~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~ 104 (906)
T PRK14720 31 FKELDDLI---DAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEH 104 (906)
T ss_pred HHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHH
Confidence 34455666 777 88888888887775443 44333 23333345555555555444 22221 112
Q ss_pred ----------CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhH
Q 007396 130 ----------DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVAS 199 (605)
Q Consensus 130 ----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~ 199 (605)
+...+..+..+|-+.|+.+++.++++++++.. ..|+.+.|.+...|+.. ++++|++++.+.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------- 175 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA------- 175 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------
Confidence 22566677777778888888888888888887 34788888888888888 888888887664
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh-cCCchHHHHhHHHhHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN-ISALNVIVETSLIDMY 278 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y 278 (605)
+..|...+++.++.+++.++.... |+.+.+ -.++.+.+... |..--+.++--+-+.|
T Consensus 176 ----V~~~i~~kq~~~~~e~W~k~~~~~---~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 176 ----IYRFIKKKQYVGIEEIWSKLVHYN---SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred ----HHHHHhhhcchHHHHHHHHHHhcC---cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 333777778888888888887743 433222 12222223221 3333455666677778
Q ss_pred HhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHH
Q 007396 279 VKCGCLEKGLCLFRMMADK---CQLTYSVMISGLA 310 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 310 (605)
-+..+++++..+|+.+.+. |.....-++..|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 8888888888888877643 4445555666655
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0012 Score=54.45 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 007396 375 CVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLLSNMY 446 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 446 (605)
.+...+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444445555555555555544 11222 1233444555555556666666666655555443 23455555556
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 007396 447 ARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~ 465 (605)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 6666666666666555554
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0018 Score=53.35 Aligned_cols=104 Identities=9% Similarity=0.013 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLL 409 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 409 (605)
++..+...+...|++++|...|..+.....-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777777764321111 1344555677777777777777777765 22233 34566777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.++...|+.+.|...++++.+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888888765443
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.58 E-value=0.11 Score=52.55 Aligned_cols=394 Identities=11% Similarity=0.094 Sum_probs=234.0
Q ss_pred CCchhhccccccccCccCCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH
Q 007396 60 FWNPFCASNLVATCALSHWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA 136 (605)
Q Consensus 60 ~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 136 (605)
+-|...|+.|| .-+....+++++..++++.. | ....|..-|..-....+++....+|.+.+..-+ +...|..
T Consensus 17 P~di~sw~~li---re~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLI---REAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHH---HHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 45788999999 88833399999999999876 4 456799999999999999999999999887643 4555666
Q ss_pred HHHHHHcc-CChHHH----HHHHHHHH-HhCCCCc-hhHHHHHHHHH---------HcCCCHHHHHHHHHhcCC-C----
Q 007396 137 LFKACAKL-QALKEG----MQIHGHVF-KVGFECD-LFVQNSLINMY---------GKCEKVEFASAIFKQMDQ-K---- 195 (605)
Q Consensus 137 ll~~~~~~-~~~~~a----~~~~~~~~-~~g~~~~-~~~~~~li~~y---------~~~g~~~~A~~~~~~m~~-~---- 195 (605)
-|.-..+. ++.... .+.|+... +.|+++- -..|+.-++.. ....+++..++++.++.. |
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 55543332 333332 33344333 3454332 34466655543 334467778888877753 1
Q ss_pred -----ChhHHHHHHHHH-------HHCCChhHHHHHHHHHHh--CCCCCCChhH---------------HHHHHH-----
Q 007396 196 -----SVASWSAIIAAH-------ASNGLWSECLKLFGEMNN--EKCWRPEESI---------------LVSVLS----- 241 (605)
Q Consensus 196 -----~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~p~~~t---------------~~~ll~----- 241 (605)
|-..|..=|... -+...+..|.+++++... .| +.-+..+ +...|.
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~G-L~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRG-LNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-hcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111111111110 112233344444444321 01 1000000 111111
Q ss_pred --------------------------------------------HHhccCCh-------hhHHHHHHHHHHhcCCchHHH
Q 007396 242 --------------------------------------------ACTHLGAL-------DLGKCTHGSLIRNISALNVIV 270 (605)
Q Consensus 242 --------------------------------------------a~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~ 270 (605)
.+...|+. +++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111221 223333333333222223333
Q ss_pred HhHHHhHHHhcC---CHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 007396 271 ETSLIDMYVKCG---CLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLS 342 (605)
Q Consensus 271 ~~~li~~y~~~g---~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 342 (605)
|.++.+.--..- ..+.....+++.. ..-..+|...++.-.+..-.+.|..+|.+..+.+..+ +.....+++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 333322111111 1233333333333 1224678888888888888999999999999998888 5567777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCH--HHHHHHHHHHHhcCC
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQND--VVWRSLLSASKVHHN 417 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~--~~~~~ll~a~~~~g~ 417 (605)
-+| .++.+-|.++|+.=.+++|- ++.--...++-+...|+-..|..+|++. .+.|+. .+|..+|.-=..-|+
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 655 58889999999987765553 3455567888889999999999999988 234443 499999999999999
Q ss_pred hHHHHHHHHHHHhhCCCC----CchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 418 LEIGEIAAKNLFQINSHH----PSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
.....++-++....-|.+ ...-..+++.|.-.+.+..-..-++.|
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999988877665521 123456677777776655444444433
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.53 E-value=0.00033 Score=51.44 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC-ChhHHHHHHHHHHhC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ-RWYDVAKIRTEMASK 465 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 465 (605)
+..+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45688888999999999999999999999999999999999999999999 799999999887753
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.0017 Score=65.03 Aligned_cols=95 Identities=6% Similarity=-0.086 Sum_probs=48.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|...|+++.. --+.+...|..+..+|.+.|++++|...+++. .+.|+ ...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445556666666555552 11123444555555555555555555555554 33332 2345555555555555555
Q ss_pred HHHHHHHHHhhCCCCCchH
Q 007396 421 GEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~ 439 (605)
|+..++++++++|.++...
T Consensus 89 A~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 5555555555555554443
No 155
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.12 Score=50.65 Aligned_cols=84 Identities=20% Similarity=0.090 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 381 (605)
.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..+++++-.++-.. .-++.-|..+++.+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 3333444444555444444433331 24444444555555555555544443211 112234445555555
Q ss_pred hcCCHHHHHHHHHHC
Q 007396 382 RAGMLGEALELIQSM 396 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m 396 (605)
+.|+..+|..++.++
T Consensus 249 ~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI 263 (319)
T ss_pred HCCCHHHHHHHHHhC
Confidence 555555555555543
No 156
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.019 Score=52.32 Aligned_cols=183 Identities=10% Similarity=0.067 Sum_probs=130.0
Q ss_pred cCCHHHHHHHHhccCCC--------Ce-eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCCH
Q 007396 281 CGCLEKGLCLFRMMADK--------CQ-LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL-SACSHAGLV 350 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~~~--------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 350 (605)
..+.++..+++..+... +. ..|..++-+....|+.+.|...++++... + |.+.-...+= .-+-..|..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 45778888888776521 11 23444555667788899999999998875 3 5543222111 123446889
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
++|.++++.+..+. +.|..+|-.=+.+.-..|+.-+|.+-+.+. .+-.|...|.-|-..|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999988542 445666766666666777777777766555 34568889999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHcC---ChhHHHHHHHHHHhCCC
Q 007396 429 FQINSHHPSDYVLLSNMYARAQ---RWYDVAKIRTEMASKGL 467 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~ 467 (605)
.-..|.++..+..++..+...| +.+-|.+++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999988888888876655 45667788887776543
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.11 Score=50.91 Aligned_cols=108 Identities=9% Similarity=0.105 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKV 414 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~ 414 (605)
.+.+.-+.-|...|....|.++-. ++.+ |+...|...+.+|+..+++++-.++... +..+..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355556666777888888777654 4444 8899999999999999999998887654 3345789999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
.|+..+|.....++ .+..-+.+|.++|+|.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 99999998887772 2256788999999999998754
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00055 Score=49.56 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=43.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677788888888888888888877778888888888888888888888777654
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.0031 Score=56.12 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
.+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++.+..|.+...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555566666666666554 21221 246666677777777888888888887777777777777777777
Q ss_pred HHcCC--------------hhHHHHHHHHHHh
Q 007396 447 ARAQR--------------WYDVAKIRTEMAS 464 (605)
Q Consensus 447 ~~~g~--------------~~~a~~~~~~m~~ 464 (605)
...|+ +++|.+++++...
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 77665 4555566555554
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0066 Score=58.92 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=112.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----------
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS--ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHY----------- 373 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----------- 373 (605)
.++...|+.++|...--..++.. +. ..+..+++ ++...++.+.+...|++.. .+.|+-..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 35677888888888776665532 21 12222333 3445678888888888776 344543221
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 374 --GCVVDLMGRAGMLGEALELIQSM-PIQQ-----NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 374 --~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
.-=.....+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.--++.++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 11223456789999999999887 5444 445666666778899999999999999999999888888888999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCC
Q 007396 446 YARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
+...++|++|.+-++...+..-.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999988765443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0069 Score=53.89 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=76.6
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD--DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCV 376 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 376 (605)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+... ..| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 4556666667777777777777777765433322 24566666667777777777777776663 223 34445555
Q ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 377 VDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
...|...|+...+..-++.. ...+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55565555554443322211 012577888888888888765 5556666655554
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.32 E-value=0.0031 Score=49.69 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 007396 100 NTLIRGFVKEVEFEEALFLYNEMFERGV-EPDNFTFPALFKACAKLQ--------ALKEGMQIHGHVFKVGFECDLFVQN 170 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (605)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.++++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677777999999999999999999 899999999999987653 2345778999999999999999999
Q ss_pred HHHHHHHc
Q 007396 171 SLINMYGK 178 (605)
Q Consensus 171 ~li~~y~~ 178 (605)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.041 Score=56.47 Aligned_cols=233 Identities=14% Similarity=0.076 Sum_probs=126.7
Q ss_pred hHHHHHHHHHccCChHHH--HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHC
Q 007396 133 TFPALFKACAKLQALKEG--MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASN 210 (605)
Q Consensus 133 t~~~ll~~~~~~~~~~~a--~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 210 (605)
.++..=++|.+.++..-- ..-++++.+.|-.|+..... ..++-.|.+.+|.++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH------------------c
Confidence 355555666666654432 23345667778777766433 455668889999998865 4
Q ss_pred CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
|....|+++|..|+--. ...-+...|..++-+.+...-.+. ..++.--.+-..++...|+.++|..+
T Consensus 659 G~enRAlEmyTDlRMFD-----------~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMFD-----------YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred CchhhHHHHHHHHHHHH-----------HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55555666665553211 111122233333333322221111 00111112344566667777777654
Q ss_pred HhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 007396 291 FRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV 370 (605)
Q Consensus 291 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 370 (605)
...+|-.+-+.++-+++-. .+..+...+..-+-+...+..|-++|..|-.
T Consensus 726 ------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 726 ------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred ------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 3344545555555554432 2333444444444455566667777776642
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCCCHH-HHHHH----------HHHHHhcCChHHHHHHHHHHHhh
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSMP-IQQNDV-VWRSL----------LSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-~~~~l----------l~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
...++++....+++++|..+-++.| +.||+. -|... -.||.+.|+-.+|.++++++...
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2356777777888888888877774 445543 22222 24567778888888888877543
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0033 Score=55.68 Aligned_cols=93 Identities=8% Similarity=-0.095 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
...|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|+.++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666677777788888888888776 33332 2478888888999999999999999999999888888888888
Q ss_pred HHH-------HcCChhHHHHHHHHH
Q 007396 445 MYA-------RAQRWYDVAKIRTEM 462 (605)
Q Consensus 445 ~~~-------~~g~~~~a~~~~~~m 462 (605)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888666666544
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0098 Score=57.44 Aligned_cols=132 Identities=11% Similarity=0.075 Sum_probs=95.1
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA-CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
+|-.++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 577777777777778888888888875422 222333333332 33357777799999999864 44567788889999
Q ss_pred HHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 380 MGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
+.+.|+.+.|..+|++. ..-|.. ..|...+.-=.+.|+.+....+.+++.+.-|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999987 222333 499999999999999999999999999987763
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.26 E-value=0.0053 Score=61.59 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHh
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGR 382 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 382 (605)
....+...|++++|++.|++.++. .| +...|..+..++...|++++|...++.+.. +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 345677889999999999999984 44 456777888899999999999999999983 344 56788889999999
Q ss_pred cCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007396 383 AGMLGEALELIQSM-PIQQNDVVWRSLLSAS 412 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~ 412 (605)
.|++++|...|++. .+.|+......++.-|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5667665555454433
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0015 Score=47.19 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
+...+.+.|++++|.+.|++. ...|+. ..|..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 445677889999999999887 555654 4888888899999999999999999999998764
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.012 Score=61.73 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..|..+.-.....|++++|...++++.+++| +...|..++..|...|+.++|...+++....+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444444444445666666666666666665 34556666666666666666666666555443
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.28 Score=51.12 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=57.6
Q ss_pred hhhhhhccCCCCCCCCCccccccCh-hHHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHH
Q 007396 7 LHQSLLLTQPEEPPKGPELNLRLKE-QECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYA 84 (605)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A 84 (605)
.+..+++ .|+.|-..-++++.... +..-.++.+ -.+++|.+.... .|.+.+|..|. ..- ..-.++.|
T Consensus 643 lld~Il~-~pE~pnk~~ii~~~ikslrD~~~Lve~-vgledA~qfiEd------nPHprLWrllA---e~Al~Kl~l~tA 711 (1189)
T KOG2041|consen 643 LLDKILL-TPENPNKTCIIEVMIKSLRDVMNLVEA-VGLEDAIQFIED------NPHPRLWRLLA---EYALFKLALDTA 711 (1189)
T ss_pred EHhhHhc-CcCCCCcceEEEEEehhhhhHHHHHHH-hchHHHHHHHhc------CCchHHHHHHH---HHHHHHHhhhhH
Confidence 3334433 44555555555554333 222223332 224444433321 46666666555 333 44455666
Q ss_pred HHHHhhcCC-CCc---------c---cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHH
Q 007396 85 CSIFRQIDE-PGA---------F---DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGM 151 (605)
Q Consensus 85 ~~~f~~~~~-~~~---------~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 151 (605)
+..|-+... +.+ . .-.+=|.+| -|++++|.++|-+|-++.+ .+....+.||+-...
T Consensus 712 E~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~ 780 (1189)
T KOG2041|consen 712 EHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVY 780 (1189)
T ss_pred hhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHH
Confidence 666655433 111 0 112223333 3778888888877654421 233444555555444
Q ss_pred H
Q 007396 152 Q 152 (605)
Q Consensus 152 ~ 152 (605)
+
T Consensus 781 q 781 (1189)
T KOG2041|consen 781 Q 781 (1189)
T ss_pred H
Confidence 4
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.21 E-value=0.005 Score=47.71 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
..+...+...|++++|...+++..+.. ..+...+..+...+...+++++|.+.|+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554421 1112333344444444455555555554443
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.21 E-value=0.25 Score=48.10 Aligned_cols=275 Identities=14% Similarity=0.112 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHhcC---CCChhHHHHHHH--HHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHH
Q 007396 179 CEKVEFASAIFKQMD---QKSVASWSAIIA--AHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGK 253 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~ 253 (605)
.|+-..|+++-.+.. ..|....-.++. +-.-.|++++|.+-|+.|.... ..-..-+..+.-..-+.|+.+.|.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHH
Confidence 455566655554432 223333333332 2334577777777777776421 111222333444445667777777
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC-----CCCee--eHHHHHHHHH---hcCCHHHHHHHHH
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA-----DKCQL--TYSVMISGLA---MHGQGKEALSIFS 323 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~ 323 (605)
++-+..-..-. .-...+.+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+ -.-+...|...-.
T Consensus 175 ~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 77666655442 234566778888888888888888887544 33332 1222332221 1234556666555
Q ss_pred HHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CC
Q 007396 324 EMLREGLEPDDVV-YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PI 398 (605)
Q Consensus 324 ~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 398 (605)
+..+ +.||-+. -.....++.+.|++.++-.+++.+- ...|.+..+.. ..+.+.|+. +..-+++. ..
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhc
Confidence 5554 6677643 3334567889999999999999887 33566655433 334566653 22222222 34
Q ss_pred CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHhCC
Q 007396 399 QQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA-QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 399 ~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 466 (605)
+||.. +...+..+-...|++..|..-.+.+....|. .+.|..|.++-... |+-.++...+.+..+.-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 66544 6667777888899999999999999999886 67888888887554 99999998888777643
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.023 Score=55.12 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHH
Q 007396 306 ISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA-GLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLM 380 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 380 (605)
+..|...|++..|-..+.++ ...|... |++++|.++|++...-+..... ..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 45556666666655554443 3345555 7777777777776532221111 24556677788
Q ss_pred HhcCCHHHHHHHHHHCC---CC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 381 GRAGMLGEALELIQSMP---IQ-----QNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+.|++++|.++|++.. .. .+.. .+-..+-++...||...|...+++....+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888761 11 1111 2222233456678888899999888888775
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0035 Score=58.75 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH---hcCChHHHHHHHHHHHhhCCCCCchHHH
Q 007396 367 VPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK---VHHNLEIGEIAAKNLFQINSHHPSDYVL 441 (605)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (605)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++. ......++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346889999999999999999999999887 4444 3446666666543 3345678999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
|...+...|++.+|...++.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986644
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.15 E-value=0.0079 Score=47.47 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGL-EPDDVVYVGVLSACSHAG--------LVNEGLLCFDRMKLEYRIVPTVQHY 373 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 373 (605)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+|+.|. ..+++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3456666777999999999999999999 899999999999877543 2445677888887 46888888888
Q ss_pred HHHHHHHHh
Q 007396 374 GCVVDLMGR 382 (605)
Q Consensus 374 ~~li~~~~~ 382 (605)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887765
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.15 E-value=0.07 Score=50.21 Aligned_cols=173 Identities=9% Similarity=0.040 Sum_probs=101.6
Q ss_pred HHhHHHhcCCHHHHHHHHhccCCCCee---e---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMADKCQL---T---YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH- 346 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~~~~~---~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 346 (605)
....+.+.|++++|.+.|+.+....+. . .-.++.+|.+.+++++|...+++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877643221 1 223556778888888888888888774322222344444444331
Q ss_pred -c---------------CC---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH
Q 007396 347 -A---------------GL---VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRS 407 (605)
Q Consensus 347 -~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 407 (605)
. .+ ..+|...|+.++ +-|=...-..+|...+..+..+--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 0 01 122333444443 333333334444444433310000001 12
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
...-|.+.|.+..|..-++.+++.-|..+ .....+..+|.+.|..++|.++.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 33457888999999999999999887743 456788899999999999998877654
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.00079 Score=49.22 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=44.6
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|+..++++.+.+|+++..+..++.+|.+.|++++|.++++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888899999999999999888888889999999999999998888776543
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.002 Score=60.00 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 317 EALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQS 395 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (605)
+...+-++++.+| .-..+.+++++|...|.+.+ .+.| |..-|.--..+|.+.|.++.|.+-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555555554 34567899999999999998 4555 566667778899999999999887777
Q ss_pred C-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 396 M-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 396 m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
. .+.|... +|..|..+|...|++++|++.|++.++++|++......|-.
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 6 6777655 99999999999999999999999999999998754444433
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.002 Score=47.82 Aligned_cols=57 Identities=5% Similarity=0.037 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+...++++.|..+++++.+.+|.++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788899999999999999999999999999999999999999999999888654
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0066 Score=56.66 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=79.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAG 384 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 384 (605)
.-+.+.+++++|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|-.+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 447788999999999999998 555 45667777889999999999988777766 34454 578999999999999
Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007396 385 MLGEALELIQSM-PIQQNDVVWRSLLS 410 (605)
Q Consensus 385 ~~~~A~~~~~~m-~~~p~~~~~~~ll~ 410 (605)
++++|.+.|++. .+.|+..+|..=|.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999887 78888777654443
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.05 E-value=0.0035 Score=55.87 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=75.4
Q ss_pred HHHHHhhc--CCCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcc------------
Q 007396 84 ACSIFRQI--DEPGAFDFNTLIRGFVKE-----VEFEEALFLYNEMFERGVEPDNFTFPALFKACAKL------------ 144 (605)
Q Consensus 84 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~------------ 144 (605)
-...|++. ..+|..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 457777888888877654 55666677788888888888888999888877541
Q ss_pred ----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 145 ----QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 145 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356688999999999999999999999999877664
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.16 Score=44.12 Aligned_cols=131 Identities=9% Similarity=0.030 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC---HHH
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI-VPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN---DVV 404 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~ 404 (605)
+.|....-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++++ ...|+ ..+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666788888999999999999998873 54 456777778888888899999999998887 22221 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
...+...+...|..+.|+..|+.+...-|. +..-.....+++++|+.+++..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 445667888899999999999999988774 5555566778889998887766554443
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.00 E-value=0.0023 Score=49.08 Aligned_cols=80 Identities=13% Similarity=0.233 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 007396 312 HGQGKEALSIFSEMLREGLE-PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 389 (605)
+|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...| +....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46667777777777664321 2333444456666667777777766665 2 1112 223333345566666666666
Q ss_pred HHHHHH
Q 007396 390 LELIQS 395 (605)
Q Consensus 390 ~~~~~~ 395 (605)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.98 E-value=0.012 Score=59.40 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=49.6
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC----CChhHHHHH
Q 007396 130 DNFTFPALFKACAKLQALKEGMQIHGHVFKV--GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ----KSVASWSAI 203 (605)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~l 203 (605)
+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. +|..++|.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444444444444444332 1111122333444444444444444444443322 344444444
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH 245 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~ 245 (605)
+..+.+.|++..|.++...|...+ ...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHH
Confidence 444444444444444444444444 34444444444444433
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.025 Score=48.87 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=94.6
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
++..++....|+...--.|..++.+.|+..||...|++. .+.-|......+..+....++...|...++.+.+.+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 344445566788888889999999999999999999987 45567888889999999999999999999999998876
Q ss_pred --CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 435 --HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 435 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+.....+...|...|+.++|...|+.....-
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 67788899999999999999999999988754
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.95 E-value=0.0059 Score=61.43 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 007396 100 NTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC 179 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (605)
.++|+.|.+.|..+++++++..=...|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 45555555555555555555555555555555555555555555555555555555555554444444444444444333
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.95 E-value=0.038 Score=47.07 Aligned_cols=92 Identities=7% Similarity=-0.019 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
.-.+...+...|++++|..+|+....-. +-+..-|-.+..+|-..|++++|...|.......+ .|+..+-.+..+|.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3334444455555555555555555422 12223333344444444555555555555554442 34444444555555
Q ss_pred hcCCHHHHHHHHhcc
Q 007396 280 KCGCLEKGLCLFRMM 294 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m 294 (605)
+.|+.+.|++.|+..
T Consensus 115 ~lG~~~~A~~aF~~A 129 (157)
T PRK15363 115 ACDNVCYAIKALKAV 129 (157)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555533
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=96.90 E-value=0.0076 Score=51.52 Aligned_cols=86 Identities=8% Similarity=-0.032 Sum_probs=74.7
Q ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHH
Q 007396 379 LMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (605)
-+-..|++++|..+|+-+ -..| +..-|..|..+|...++++.|...+.....++++||.++...+..|...|+.+.|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345689999999999887 2222 44568888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 007396 457 KIRTEMAS 464 (605)
Q Consensus 457 ~~~~~m~~ 464 (605)
+.|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99998876
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.87 E-value=0.012 Score=56.83 Aligned_cols=129 Identities=9% Similarity=0.046 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR-AGMLGEALELIQSM--PIQQNDVVWRSLLSA 411 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a 411 (605)
.+|..++..+-+.+..+.|+.+|.+..+... .+..+|.....+-.+ .++.+.|..+|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677888888888899999999999984322 234555555555334 56677799999987 344567789999999
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...++.+.+..+|++....-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765533 47888888889999999999999998864
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.065 Score=55.61 Aligned_cols=28 Identities=11% Similarity=-0.149 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHh
Q 007396 164 CDLFVQNSLINMYGKCEKVEFASAIFKQ 191 (605)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (605)
|.+..|..|...-.+.-.++-|+..|-+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 4555555555444444444444444433
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.79 E-value=0.0044 Score=45.33 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCC
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHH-NLEIGEIAAKNLFQINS 433 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~ 433 (605)
+...|..+...+.+.|++++|+..|++. ...|+. ..|..+..++...| ++++|+..+++.++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777778888888888888888776 445644 48888888888888 79999999999998877
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.78 E-value=0.056 Score=56.81 Aligned_cols=141 Identities=12% Similarity=0.033 Sum_probs=101.9
Q ss_pred CCCeeeHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 007396 296 DKCQLTYSVMISGLAMH--G---QGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHA--------GLVNEGLLCFDRMK 361 (605)
Q Consensus 296 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 361 (605)
..|...|...+.+.... + ..++|..+|++..+ ..|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45678899988885443 2 37799999999998 57775 3454443333221 12334444444333
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 362 LEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 362 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.......+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...++++.+++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 11123345577888877777789999999999998 677888899999999999999999999999999999998753
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.73 E-value=0.011 Score=52.86 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=66.0
Q ss_pred CCCeeeHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CCHHHHH
Q 007396 296 DKCQLTYSVMISGLAM-----HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA----------------GLVNEGL 354 (605)
Q Consensus 296 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 354 (605)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4444555555555543 466777777888888888888888999888876542 2346678
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 355 LCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
+++++|. ++|+-||.+++..+++.+++.+.
T Consensus 124 ~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 8889998 68999999999999988887664
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.67 E-value=0.11 Score=50.29 Aligned_cols=133 Identities=13% Similarity=0.178 Sum_probs=62.0
Q ss_pred ChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCC----CC-cchHHHHHHHHHccCChHHHHHHH
Q 007396 80 SMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVE----PD-NFTFPALFKACAKLQALKEGMQIH 154 (605)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~-~~t~~~ll~~~~~~~~~~~a~~~~ 154 (605)
++++|..+|++ ....|-..|++++|.+.|.+......+ .+ ...|......+ +..++++|...+
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 56666665544 355666777777777777765432111 01 11233333333 233666666666
Q ss_pred HHHHHh----CCCCc--hhHHHHHHHHHHcC-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHCCChhHHHH
Q 007396 155 GHVFKV----GFECD--LFVQNSLINMYGKC-EKVEFASAIFKQMDQ-----KS----VASWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 155 ~~~~~~----g~~~~--~~~~~~li~~y~~~-g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 218 (605)
.+.... | .++ ...+..+...|-+. |++++|.+.|++..+ .+ ...+..+...+.+.|++++|++
T Consensus 98 ~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 555432 2 111 22344444455555 555555555544321 11 1134444455555666666666
Q ss_pred HHHHHHh
Q 007396 219 LFGEMNN 225 (605)
Q Consensus 219 ~~~~m~~ 225 (605)
+|++...
T Consensus 177 ~~e~~~~ 183 (282)
T PF14938_consen 177 IYEEVAK 183 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.66 E-value=0.0029 Score=46.17 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV 403 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 403 (605)
.|++++|.++|+.+... .+-+...+..+...|.+.|++++|.++++++ ...|+..
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 45555555555555532 1124444445555555555555555555555 3334433
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=1.2 Score=47.26 Aligned_cols=306 Identities=11% Similarity=0.016 Sum_probs=154.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC---CHHHHHHHHHhcCC--CChhHHHHHHHHHHHC
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE---KVEFASAIFKQMDQ--KSVASWSAIIAAHASN 210 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 210 (605)
.+|+-+...+.+..|.++-..+-..-.. ...++.....-+.+.. +-+.+.++-+++.. ...++|..+..-.-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 3444455556666666665554211111 1455666666666553 23334444444444 3456677777777777
Q ss_pred CChhHHHHHHHHHHhCCCCC---CChhHHHHHHHHHhccCChhhHHHHHHHHHHhc-----------CCchHHHHhHHHh
Q 007396 211 GLWSECLKLFGEMNNEKCWR---PEESILVSVLSACTHLGALDLGKCTHGSLIRNI-----------SALNVIVETSLID 276 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~ 276 (605)
|+.+-|..+++.=...+.-. .+..-+...+.-+...|+.+...++.-.+...- .+.....|.-++.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 77777777765422221000 012234455566666666666665554444321 1111112211111
Q ss_pred ---------HHHhcCCHHHHHHHHh--ccCC-----CCeeeHHHHHHHHHhcCC---HHHH-------HHHHHHHHH-cC
Q 007396 277 ---------MYVKCGCLEKGLCLFR--MMAD-----KCQLTYSVMISGLAMHGQ---GKEA-------LSIFSEMLR-EG 329 (605)
Q Consensus 277 ---------~y~~~g~~~~A~~~f~--~m~~-----~~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~-~g 329 (605)
.| ..++...+...|. .... .-.........++++... ..+| +.+.+.+.. .|
T Consensus 601 ~~~~~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 601 HQDRATLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred hhchhhhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1111111111111 1000 001112222233333322 1111 122222221 12
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLL 409 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 409 (605)
..-...|.+--+.-+...|...+|.++-.+.+ .|+-..|-.-+.+++..+++++-+++-+.+. .+..|.-++
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFV 751 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFV 751 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHH
Confidence 23333445555555666777777777665554 4777777777888888888888777777663 245666777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
.+|.+.|+.++|...+-+.-.+ .-...+|.+.|++.+|.++-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 8888888888887776554221 15677788888888777643
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.64 E-value=0.019 Score=54.45 Aligned_cols=95 Identities=6% Similarity=-0.002 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLL 442 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 442 (605)
..|...+..+.+.|++++|...|+.. ...|+. ..+--+..++...|+++.|...|+.+.+..|++ +..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777777666 223432 255556667777888888888888888777664 3445556
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC
Q 007396 443 SNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+.+|...|++++|.++++...+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888877664
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.62 E-value=0.034 Score=45.57 Aligned_cols=83 Identities=12% Similarity=-0.005 Sum_probs=48.9
Q ss_pred HHHhcCCHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHcC
Q 007396 379 LMGRAGMLGEALELIQSM---PIQQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH---HPSDYVLLSNMYARAQ 450 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 450 (605)
++-..|+.++|..+|++. +.... ...+-.+.++++..|++++|..++++.....|+ +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 444556666666666554 22111 124445566667777777777777777666565 4444555566667777
Q ss_pred ChhHHHHHHHH
Q 007396 451 RWYDVAKIRTE 461 (605)
Q Consensus 451 ~~~~a~~~~~~ 461 (605)
+.++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 77777766544
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.64 Score=45.75 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 007396 309 LAMHGQGKEALSIFSEMLRE---GLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAG 384 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 384 (605)
..++|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|..--+... .+.|. +..|..-...+.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 45566666676666666542 223334445555555566666666666555444 12111 111222222333345
Q ss_pred CHHHHHHHHHHC
Q 007396 385 MLGEALELIQSM 396 (605)
Q Consensus 385 ~~~~A~~~~~~m 396 (605)
.+++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 566666655554
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.62 E-value=0.0018 Score=39.54 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=30.1
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHcCChhHHH
Q 007396 425 AKNLFQINSHHPSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (605)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 200
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.61 E-value=0.041 Score=48.68 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPD--NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLI 173 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (605)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++..++... .....++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 34456666667777778888887777765432221 23566666667777777777777777766532 2334455555
Q ss_pred HHHH
Q 007396 174 NMYG 177 (605)
Q Consensus 174 ~~y~ 177 (605)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.12 Score=47.31 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=115.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC--CCh--------hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHH
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQ--KSV--------ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVS 238 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ 238 (605)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+..+.. -+.++.....
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHH
Confidence 55666666554444444444443322 222 234566777777888999999999998876 5667788888
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHH-----HHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVI-----VETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLA 310 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 310 (605)
+.+...+.|+.+.|...++.+.+..-..|.. +.......|.-.+++..|...|+++... |++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888999999999999999887654333333 3334445566778899999999887754 4555666555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007396 311 MHGQGKEALSIFSEMLREGLEPDDVVYV 338 (605)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 338 (605)
-.|+..+|++..+.|+.. .|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 678999999999999874 55554444
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.45 E-value=0.071 Score=43.68 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=56.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHcC
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPD--NFTFPALFKACAKLQALKEGMQIHGHVFKVGFEC--DLFVQNSLINMYGKC 179 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~ 179 (605)
.++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++......+.+ +......+...+...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 445556777777777777777665433 2244455566666777777777777766553221 112222223345566
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 007396 180 EKVEFASAIFKQMDQKSVASWSAIIAAH 207 (605)
Q Consensus 180 g~~~~A~~~~~~m~~~~~~~~~~li~~~ 207 (605)
|+.++|.+.+-....++...|.--|..|
T Consensus 89 gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 89 GRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666544333333333333333
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.40 E-value=0.17 Score=52.26 Aligned_cols=225 Identities=19% Similarity=0.206 Sum_probs=120.6
Q ss_pred Ccc-CCCChHHHHHHHhhc-----------CCCCcccHHHHHHHHHhCCCc--hHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007396 74 ALS-HWGSMDYACSIFRQI-----------DEPGAFDFNTLIRGFVKEVEF--EEALFLYNEMFERGVEPDNFTFPALFK 139 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~-----------~~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~ 139 (605)
--| ..|.+++|.++---- ..-+...++..=.+|.+-.+. -+-+.-+++|++.|-.|+... +..
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~ 640 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LAD 640 (1081)
T ss_pred hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHH
Confidence 445 788888776532110 011233344555566655543 344555677888887788754 334
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------ChhHH-------HHHHH
Q 007396 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK-------SVASW-------SAIIA 205 (605)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~-------~~li~ 205 (605)
.|+-.|.+.+|-++|. +.|.+ |..+.+|.....+|.|.++...-... .-..| .+-..
T Consensus 641 ~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAE 711 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAE 711 (1081)
T ss_pred HHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHH
Confidence 5667788888888775 44544 44566677666777777665432210 00111 12233
Q ss_pred HHHHCCChhHHHHHHHH------HHhCCC--CCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 206 AHASNGLWSECLKLFGE------MNNEKC--WRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 206 ~~~~~g~~~~A~~~~~~------m~~~g~--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
.+...|+.++|..+.-+ +.+-+. -..+..+...+..-+.+...+..|-++|..|-+. .+++++
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVql 782 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQL 782 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhh
Confidence 34455666666554321 111110 1223344444444455566666777777666433 256777
Q ss_pred HHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
....+++.+|..+-++.++--...|-.-.+-++...++++|.
T Consensus 783 Hve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred eeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH
Confidence 778888888888888777542222322333334444444443
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.25 E-value=0.018 Score=42.59 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 378 DLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
..|.+.+++++|.++++++ ...|+ ...|......+...|++++|...+++..+.+|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888999999998887 55554 44777778888999999999999999999999766543
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.21 E-value=0.029 Score=54.51 Aligned_cols=130 Identities=8% Similarity=-0.057 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCC-CCH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRM---KLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-------PIQ-QND 402 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~-p~~ 402 (605)
..|..|.+.|.-.|++++|....+.- .+++|-.. ....+..+...+.-.|+++.|.+.|+.. +-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666666778999988766542 22444322 2356677778888889999999888764 211 223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQI----N--SHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
-+..+|..+|....+++.|+..+.+-+.+ + .-...++.+|.++|...|..+.|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 36778888888888899999888875543 2 12456788999999999999999887766543
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.20 E-value=0.026 Score=56.49 Aligned_cols=62 Identities=6% Similarity=-0.013 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV----VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
...++.+..+|.+.|++++|...|++. .+.|+.. .|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666666663 4555532 4666666666666666666666666665
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.16 E-value=1.2 Score=41.99 Aligned_cols=23 Identities=13% Similarity=0.456 Sum_probs=12.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHh
Q 007396 203 IIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
....+.+.|++++|.+.|+++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~ 60 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN 60 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344455555666665555554
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.08 E-value=1.6 Score=42.75 Aligned_cols=288 Identities=15% Similarity=0.107 Sum_probs=144.1
Q ss_pred cHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH--ccCChHHHHHHHHHHHHhCCCCchhH--HHH
Q 007396 98 DFNTLIRGFVK--EVEFEEALFLYNEMFERGVEPDNFTFPALFKACA--KLQALKEGMQIHGHVFKVGFECDLFV--QNS 171 (605)
Q Consensus 98 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 171 (605)
.|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..++.+-. -.|+.+.|++-|+-|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555443 35666666665554432 4456666666665543 348888888888877532 11111 111
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhH--HHHHHHHHhc-
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESI--LVSVLSACTH- 245 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t--~~~ll~a~~~- 245 (605)
|.----+.|+.+.|+..-+..-.. -.-.|.+.+...+..|+|+.|+++++.-+....+.++..- -..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 222223567777777666554432 2236777788888888888888888776554324454422 1222222211
Q ss_pred --cCChhhHHHHHHHHHHhcCCchHHH-HhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHH
Q 007396 246 --LGALDLGKCTHGSLIRNISALNVIV-ETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 246 --~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (605)
..+...|+..-.+..+. .||..- --.-..++.+.|++.++-.+++.+-+..+..--..+..+++.|+ -++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHH
Confidence 12333444444444333 222211 11223456666666666666666654332222222222333333 333333
Q ss_pred HHHHH-cCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHC
Q 007396 323 SEMLR-EGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR-AGMLGEALELIQSM 396 (605)
Q Consensus 323 ~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 396 (605)
++..+ ..++||. .....+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+.+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33322 1244543 344455555566666666655444443 345666666555555432 36666666665554
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.03 E-value=0.56 Score=46.53 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHhHHHhcCCHHHHHHHHhccCCC---Cee-eHH---HHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMADK---CQL-TYS---VMISGLAM---HGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~-~~~---~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
.++-.|-...+++...++++.+... ++. +-+ ...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777643 111 111 12234444 6778888888887665556667777766655
Q ss_pred HH
Q 007396 343 AC 344 (605)
Q Consensus 343 a~ 344 (605)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.03 E-value=0.016 Score=37.93 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57788889999999999999999999999998887776653
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=2.8 Score=44.59 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=62.0
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCC---cccHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPG---AFDFNTLIRGFVKEVE--FEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL 147 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 147 (605)
+-. ..+.+..|.++-..+..|. ...|.....-+.+..+ -+++++..++=...-. -+..+|..+.+-.-..|+.
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~ 523 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRF 523 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcH
Confidence 445 6788888888888877765 3334444455555432 2334444433332212 3344677777666677888
Q ss_pred HHHHHHHHHHHHhCCC----CchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 148 KEGMQIHGHVFKVGFE----CDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 148 ~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
+.|..+.+.=...+.. .+..-+...+.-..+.|+.+-...++-.+.
T Consensus 524 ~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 524 ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 8877765532222211 111223333444455555555555554443
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.58 Score=43.13 Aligned_cols=231 Identities=11% Similarity=0.003 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHH-hccCC--hhhHHHHHHHHHHhcCCchHHHHhH
Q 007396 197 VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSAC-THLGA--LDLGKCTHGSLIRNISALNVIVETS 273 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (605)
...|+.-+..+++....++|..-+....+-+ .||-. |-..-..+ .+.|. +-..+.+|.++.+.- ..-+++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD--~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD--QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC--Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHH
Confidence 3456666666777766666665555444322 22211 11100001 11221 112334444444321 122456
Q ss_pred HHhHHHhcCCHHHHHHHHhccCCC--Ce--------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMADK--CQ--------LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
|...|.-..-+++-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+.++.+.++...+-+......|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 666666555555555555433221 12 23355666666677777888888888876555566777777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCC
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIV----PTVQHYGCVVDLMGRAGMLGEALELIQSMPIQ-Q-NDVVWRSLLSASKVHHN 417 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~ll~a~~~~g~ 417 (605)
-.+.||.+.|..+|+...+..+.- -+..+.......|.-++++.+|...+.+.+.. | |...-|.-.-+..-.|+
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 788888888888888776443321 11222222233344556667777777666322 2 22233333333344566
Q ss_pred hHHHHHHHHHHHhhCCC
Q 007396 418 LEIGEIAAKNLFQINSH 434 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~ 434 (605)
...|.+..+.+.+..|.
T Consensus 302 l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 67777777777776665
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.92 E-value=0.17 Score=48.08 Aligned_cols=101 Identities=7% Similarity=0.001 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLL 409 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 409 (605)
.|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444333445677777777777664432111 0234556667777777777777777766 11222 22455556
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
..+...|+.+.|...++++.+..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667788888888888888888888654
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.87 E-value=0.057 Score=52.58 Aligned_cols=257 Identities=11% Similarity=0.055 Sum_probs=154.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHccCChHHHHHHHHHHHH--h--CCC-CchhHHHHHHH
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPDNF----TFPALFKACAKLQALKEGMQIHGHVFK--V--GFE-CDLFVQNSLIN 174 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~~-~~~~~~~~li~ 174 (605)
.-+++.|+.+..+.+|+..++.|.. |.. .|..+-++|.-.+++++|+++|..=+. . |-+ -.......|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478899999999999999988743 433 456666777778899999988764221 1 100 01122223334
Q ss_pred HHHcCCCHHHHHHHHHh-------cCCC--ChhHHHHHHHHHHHCCC--------------------hhHHHHHHHHHH-
Q 007396 175 MYGKCEKVEFASAIFKQ-------MDQK--SVASWSAIIAAHASNGL--------------------WSECLKLFGEMN- 224 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~-------m~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~- 224 (605)
.+--.|.+++|.-.-.+ +..+ ...++..+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44445666666433211 1111 11234445555554442 234444443321
Q ss_pred ---hCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH----hcC-CchHHHHhHHHhHHHhcCCHHHHHHHHhccC-
Q 007396 225 ---NEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIR----NIS-ALNVIVETSLIDMYVKCGCLEKGLCLFRMMA- 295 (605)
Q Consensus 225 ---~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~- 295 (605)
+.|.--.-...|..+.+.|--.|+++.|...|+.-.. .|- ......+..|.++|.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1220011123455555556667889999888776543 231 1234567888899999999999998887542
Q ss_pred ------CCC--eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 296 ------DKC--QLTYSVMISGLAMHGQGKEALSIFSEMLRE-----GLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 296 ------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
.+. ..+.-++.+.|.-...+++|+.++.+-..- ...-....+.+|..++...|..++|+.+.+...
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 332 234556777888888899999888765431 122234678889999999999999988766554
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.76 E-value=0.055 Score=46.55 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA-----SKGLNQ 469 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~ 469 (605)
....++..+...|+++.|....+++...+|-+...|..++.+|...|+..+|.++++++. +.|+.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 556677778899999999999999999999999999999999999999999999998875 346655
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.75 E-value=0.9 Score=37.22 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=80.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 389 (605)
.-.|..++..++..+.... .+..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456666667777666542 22333333333333333334444444444322221 234555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 390 LELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 390 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
...+-.++ .+..-....+.+....|+-+.-.++...+.+.+..+|.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55555553 234455667788889999999999999988766667888999999999999999999999999999974
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.70 E-value=0.014 Score=43.82 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQI----NSH---HPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+++.+...+...|++++|+..+++.+++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777888888888888888887754 222 234677888899999999999998887653
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.69 E-value=0.12 Score=42.91 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 007396 366 IVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQNDVVWRSLLS 410 (605)
Q Consensus 366 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~ 410 (605)
+.|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344555555555555555555555554443 33333445555554
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.52 E-value=0.14 Score=42.47 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=68.0
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA 347 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (605)
..++.++|-++++.|+++....+.+..-.-|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445666777777777777776666554322111 0000000 111234679999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 381 (605)
|++..|.++.+...+.++++-+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998888888988886544
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.19 E-value=0.043 Score=41.20 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-------P-IQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|+.++|++.+++..++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444444444444444444433 1 1122 335666666777777777777777776553
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.13 E-value=0.76 Score=46.56 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=93.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH---H
Q 007396 311 MHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML---G 387 (605)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~ 387 (605)
+..+.+.-+++-++..+ +.||..+--.++ +--.+..+.+++++|++..+ .| ... |.+.... .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk-Ag----E~~-------lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK-AG----EAS-------LGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH-HH----HHh-------hchhhhhhccc
Confidence 44555666666666665 567665443333 33445678899999988773 11 000 1111100 1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--HPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...+.+.+-..+|-..+=..|..++.+.|+.++|++.++.+.+..|. +-.....|+..+...+++.++..++.+..+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111122233344455777788999999999999999988765 4557889999999999999999999998665
Q ss_pred CCCCCCccce
Q 007396 466 GLNQSPGFSL 475 (605)
Q Consensus 466 ~~~~~~~~s~ 475 (605)
...+....+|
T Consensus 325 ~lpkSAti~Y 334 (539)
T PF04184_consen 325 SLPKSATICY 334 (539)
T ss_pred cCCchHHHHH
Confidence 5555444443
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.09 E-value=4.1 Score=40.77 Aligned_cols=370 Identities=10% Similarity=0.095 Sum_probs=201.2
Q ss_pred HHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 49 KVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGA---FDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
++...+.. -+.|...|-+|+ ..| ..|.+++-++++++|..|-+ ..|..-|++=....+++....+|.+.+.
T Consensus 30 rLRerIkd--NPtnI~S~fqLi---q~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLI---QYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHH---HHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 44554443 245678899999 999 99999999999999998754 4688888888788899999999999887
Q ss_pred CCCCCCcchHHHHHHHHHccCChHH------HHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---cC------CCHHHHHH
Q 007396 125 RGVEPDNFTFPALFKACAKLQALKE------GMQIHGHVFK-VGFECD-LFVQNSLINMYG---KC------EKVEFASA 187 (605)
Q Consensus 125 ~g~~p~~~t~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~~-~~~~~~li~~y~---~~------g~~~~A~~ 187 (605)
..+. ...|..-|.-..+.+..-. ..+.|+..+. .+++|- ...|+..+...- .. .++|..++
T Consensus 105 k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 6544 4455555554444332221 2234444443 244443 344555444332 12 23455555
Q ss_pred HHHhcCC-C---------ChhHHHHHHHHHHH-------CCChhHHHHHHHHHHh--CCCCC----CChhHHHHH-----
Q 007396 188 IFKQMDQ-K---------SVASWSAIIAAHAS-------NGLWSECLKLFGEMNN--EKCWR----PEESILVSV----- 239 (605)
Q Consensus 188 ~~~~m~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~~----p~~~t~~~l----- 239 (605)
.+.++.. | |-..|..=+..... .--+..|...+++... .| +. .+..|++-+
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G-l~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG-LSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc-ccccCchhhhhhcccccccc
Confidence 5655542 1 11111111111000 0112233333333321 01 10 011111110
Q ss_pred ------H-----------------------------------------HHHhccCChhhHHHHHHHHHHhcCCchHHHHh
Q 007396 240 ------L-----------------------------------------SACTHLGALDLGKCTHGSLIRNISALNVIVET 272 (605)
Q Consensus 240 ------l-----------------------------------------~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 272 (605)
| .-....++-+.|.+. +..|.+..+..--
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t----v~rg~~~spsL~~ 337 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT----VERGIEMSPSLTM 337 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH----HHhcccCCCchhe
Confidence 0 000111222222222 2234433333222
Q ss_pred HHHhHHHhcCCHHHHHHHHhccCC---------------------------------CCeeeHHHHHHHHHhcCCHHHHH
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMAD---------------------------------KCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~~---------------------------------~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
-+-..|.-..+-+.....|+...+ +-...|...++.-.+..-.+.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 333444444444444444443210 01235666777777777778888
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHC-
Q 007396 320 SIFSEMLREG-LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQH-YGCVVDLMGRAGMLGEALELIQSM- 396 (605)
Q Consensus 320 ~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m- 396 (605)
.+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...+ ||... -.-.+.-+.+.++-..|..+|+..
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 8888888877 5666677777776554 467777788877655332 33322 244555666777778888888754
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 397 -PIQQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 397 -~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+..+ ..+|..+|.--...|+...+..+-+++.+.-|.
T Consensus 494 ~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 494 ERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 22233 347778887777788888777777777777765
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=2.8 Score=38.42 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHCC-------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhC----CCCCchHHHH
Q 007396 375 CVVDLMGRAGMLGEALELIQSMP-------IQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQIN----SHHPSDYVLL 442 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l 442 (605)
.....|.+..++++|-..|.+-. --|+.. .+-+.|-.+....|+..|++.++.--+.. |.+..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 34445666666666655554431 112221 33444444555567777777777654442 4455556666
Q ss_pred HHHHHHcCChhHHHHHH
Q 007396 443 SNMYARAQRWYDVAKIR 459 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~ 459 (605)
+.+| ..|+.+++.++.
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 6665 456666666554
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.01 E-value=0.94 Score=41.39 Aligned_cols=48 Identities=8% Similarity=0.000 Sum_probs=35.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHH
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 456 (605)
..-|.+.|.+..|..-++.+++.-|+.+ .....++.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3457888999999999999999888744 34567888899998877444
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.93 E-value=0.13 Score=47.70 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=76.5
Q ss_pred HHHHHHhhcC--CCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccC----------
Q 007396 83 YACSIFRQID--EPGAFDFNTLIRGFVKE-----VEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQ---------- 145 (605)
Q Consensus 83 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 145 (605)
..+..|...+ ++|-.+|-+++..+... +..+=.-..++.|.+.|+.-|..+|+.||+.+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4556777776 58888898888887654 445556677888999999999999999998775422
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 146 ------ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 146 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
+-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 233467888888888888888888888888887765
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.92 E-value=5.7 Score=41.55 Aligned_cols=158 Identities=13% Similarity=0.030 Sum_probs=94.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCc-----chHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhH
Q 007396 99 FNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDN-----FTFPALFKACAK----LQALKEGMQIHGHVFKVGFECDLFV 168 (605)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 168 (605)
...+++...=.|+-+.+++++.+-.+.+ +.-.. -.|..++..+.. ..+.+.+.++++.+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 3345555556677888888877765532 21111 123444443332 346777888888887763 44433
Q ss_pred HH-HHHHHHHcCCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHH
Q 007396 169 QN-SLINMYGKCEKVEFASAIFKQMDQK-------SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240 (605)
Q Consensus 169 ~~-~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll 240 (605)
|. --...+...|++++|.+.|+..... ....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence 32 2335666778888888888865421 22234445555777788888888888888765 45555666555
Q ss_pred HHH-hccCCh-------hhHHHHHHHHH
Q 007396 241 SAC-THLGAL-------DLGKCTHGSLI 260 (605)
Q Consensus 241 ~a~-~~~~~~-------~~a~~~~~~~~ 260 (605)
.+| ...++. ++|..++.++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 555 345555 56666666554
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.38 Score=45.50 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=17.5
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
|+..|-.|...|...|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555566666666666666666655554
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.78 E-value=3.2 Score=37.90 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=21.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLG 387 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 387 (605)
..-|.+.|.+..|..-++.+.+++.-.+. ......++..|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34455556666666666655544322211 123344445555555444
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.52 Score=46.37 Aligned_cols=65 Identities=2% Similarity=-0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...+..|.-++.+.+++..|++...+.++++|+|......-+.+|...|.++.|...|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34666777778888999999999999999999999999999999999999999999999988743
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.67 E-value=5.4 Score=44.96 Aligned_cols=92 Identities=26% Similarity=0.257 Sum_probs=56.4
Q ss_pred HhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV--YVGVLSACSHAGLVNE 352 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~ 352 (605)
.-+|.++|+.++|++. |...|++.+|+.+..+|.. .-|... -..|..-+...++.-+
T Consensus 959 al~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence 4467777777776654 5556788888888777642 112221 2445666677777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
|-++..+... .| .-.+..|+++-.+++|..+....
T Consensus 1018 Aa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1018 AAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 7666665542 12 23455667777777777776655
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.52 E-value=3.7 Score=37.49 Aligned_cols=193 Identities=16% Similarity=0.097 Sum_probs=104.6
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC-----CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD-----KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS- 342 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 342 (605)
..+......+...+++..+...+..... .....+......+...+...++...+.........+.. .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHHH
Confidence 3444445555555555555555544321 12233444444555555566666666665543322211 1111112
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhc
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVP----TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN--DVVWRSLLSASKVH 415 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~a~~~~ 415 (605)
.+...|+.+.+...|..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 45566666666666666642 222 2233333333455666777777776665 33333 45666666667777
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 416 HNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
++.+.+...+.......|.....+..+...+...|.++++...+....+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776654445555555555566677777777666553
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.48 E-value=0.38 Score=41.22 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK----LEYRIVPTVQH 372 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 372 (605)
.++..+...|++++|..+.+.+.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455556666666666666666531 2244566666666666666666666665543 24466665544
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.40 E-value=0.56 Score=38.27 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=64.0
Q ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC----chHHHHHHHHHHcCCh
Q 007396 379 LMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP----SDYVLLSNMYARAQRW 452 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 452 (605)
+++..|+++.|++.|.+. .+-| +...||.-..+++-.|+.++|..-+++.+++.-+.. ..|+.-+..|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888765 3333 455788888888888888888888888887743212 2466677778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 007396 453 YDVAKIRTEMASKGL 467 (605)
Q Consensus 453 ~~a~~~~~~m~~~~~ 467 (605)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.34 E-value=3.3 Score=41.20 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=50.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCC---Chh----HHHHHHHHHHH---CCChhHHHHHHHHHHhCCCCCCChhHHHHHH
Q 007396 171 SLINMYGKCEKVEFASAIFKQMDQK---SVA----SWSAIIAAHAS---NGLWSECLKLFGEMNNEKCWRPEESILVSVL 240 (605)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll 240 (605)
.++-.|-...+++...++++.+... ++. .-....-++-+ .|+.++|++++..+.... -.++..||..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 4555688889999999999988753 211 11223344555 789999999999865555 578888887776
Q ss_pred HHH
Q 007396 241 SAC 243 (605)
Q Consensus 241 ~a~ 243 (605)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 655
No 235
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.34 E-value=9.6 Score=41.54 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 170 NSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 170 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
...+..+++.++++...+.+.. +..+...--....+....|+.++|....+.+-..| .........++..+.+.|.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCC
Confidence 3344445566677766663322 22344444445556666777766766666666655 3344455555555554443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.33 E-value=0.31 Score=49.05 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV----QHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
+...++.+..+|...|++++|...|++.. .+.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34678888888999999999999998877 345663 34788888899999999999888886
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.25 E-value=1.6 Score=37.00 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=45.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCCh
Q 007396 134 FPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLW 213 (605)
Q Consensus 134 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 213 (605)
...++..+...+.......+++.+++.+. .+...+|.++..|++.+. .+..+.++. ..+......++..|-+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 34555555555666666666666666653 456667777777766532 233333331 12223333345555555555
Q ss_pred hHHHHHHHHH
Q 007396 214 SECLKLFGEM 223 (605)
Q Consensus 214 ~~A~~~~~~m 223 (605)
+++..++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555443
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.20 E-value=0.31 Score=45.24 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=82.6
Q ss_pred HHHHHhccC--CCCeeeHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----------
Q 007396 287 GLCLFRMMA--DKCQLTYSVMISGLAMH-----GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL---------- 349 (605)
Q Consensus 287 A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 349 (605)
.++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666665 66777888888877654 5677777888999999999999999999998765322
Q ss_pred ------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHC
Q 007396 350 ------VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLG-EALELIQSM 396 (605)
Q Consensus 350 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 396 (605)
-+=+..++++|. .+|+.||-++-..|++++++.|..- +..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234678999998 7899999999999999999988643 334443333
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=1.3 Score=42.40 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH----HHhcCCHHH
Q 007396 313 GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL----MGRAGMLGE 388 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~~ 388 (605)
|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|..+=.+ +..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3444444444444432 222333333333444444444444444444442 223333333222222 223445555
Q ss_pred HHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007396 389 ALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 389 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~ 427 (605)
|++.-++. .+.| |.-.-.++.......|+.+++.++.++
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55444443 3332 222333333444444444444444433
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=0.45 Score=44.37 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---CCchHHH
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-------PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH---HPSDYVL 441 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~ 441 (605)
.|+.-++.| +.|++.+|.+.|... ...||..-| |..++...|+++.|...|..+.+-.|+ -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 354444443 345566666666554 123444444 566677777777777777777766554 3455666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
|+....+.|+.++|..+++...++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777654
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=3.3 Score=39.24 Aligned_cols=121 Identities=8% Similarity=-0.003 Sum_probs=84.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCChH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRS---LLSASKVHHNLE 419 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~~ 419 (605)
.....|+..++...|+.... -.+-+...-..|...|...|+.+.|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 45567888888888888774 2223456667788899999999999999999975544433333 233333333333
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+... +++-...+|+|...-..|...|.-.|+.++|.+.+=.+.+++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3332 233345578888888999999999999999998887777654
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.90 E-value=1.9 Score=36.30 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 381 GRAGMLGEALELIQSM----PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.+.|++++|.+.|+.+ |..|- .-.-..|+.++.+.+++++|...+++.++++|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3556777777777666 22221 224455667777778888888888888888777543
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=93.85 E-value=5.4 Score=40.55 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=94.3
Q ss_pred eeH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 007396 300 LTY--SVMISGLAMH-----GQGKEALSIFSEMLR-EGLEPDDV-VYVGVLSACS---------HAGLVNEGLLCFDRMK 361 (605)
Q Consensus 300 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 361 (605)
..| ...+.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666655442 135678888888872 23566653 3322222211 1234455666665555
Q ss_pred HhcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 362 LEYRIV-PTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 362 ~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.+. -|+.....+..++.-.|+++.|..+|++. ...||.. +|....-.+.-.|+.++|.+.+++.++++|.....
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 222 34556666666667777788888888887 5667654 55555555677888899999999988888875443
Q ss_pred H--HHHHHHHHHcCChhHHHHHH
Q 007396 439 Y--VLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 439 ~--~~l~~~~~~~g~~~~a~~~~ 459 (605)
- -..+++|...+ .++|.+++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 3 23344565543 45666655
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=1.2 Score=43.98 Aligned_cols=138 Identities=11% Similarity=-0.005 Sum_probs=94.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 306 ISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
.+.|.+.|++..|...|++.... |. +...-+.++..... . .-..++.-+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 35677777788877777776541 11 11111112222111 1 112355667778889999
Q ss_pred HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHH-HHHHHHH
Q 007396 386 LGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDV-AKIRTEM 462 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 462 (605)
+.+|.+.-++. ...| |+...--=..+|...|+++.|+..|+++++++|.|-.+-.-|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 4444 5556666677899999999999999999999999988888888877777666554 7788888
Q ss_pred HhC
Q 007396 463 ASK 465 (605)
Q Consensus 463 ~~~ 465 (605)
..+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 653
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=93.75 E-value=1.5 Score=44.32 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 007396 349 LVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGR---------AGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHH 416 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g 416 (605)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788889888855566676 3444444433321 22345666666665 4444 5556666666777788
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 417 NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.+.|...|+++..++|+.+..|...+....-+|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999876644
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.72 E-value=8.6 Score=38.75 Aligned_cols=406 Identities=12% Similarity=0.086 Sum_probs=218.3
Q ss_pred cChHHHHHHHHHHHHhCCCC-----chhhccccccccCccCCCChHHHHHHHhhcCCCC-cccHHHHHHHH--HhCCCch
Q 007396 42 KNLEEFKKVHAHVLKWGFFW-----NPFCASNLVATCALSHWGSMDYACSIFRQIDEPG-AFDFNTLIRGF--VKEVEFE 113 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~ 113 (605)
.+...+..++..+.+.--.. .....+.++ +.|-.++.+.....+....+.. ...|-.+..++ -+.+.++
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~gril---nAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRIL---NAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHH---HHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 34667777777776643221 123456666 6663445666555555554411 33455555443 3667888
Q ss_pred HHHHHHHHHHHC--CCCC------------CcchHHHHHHHHHccCChHHHHHHHHHHHHhCC----CCchhHHHHHHHH
Q 007396 114 EALFLYNEMFER--GVEP------------DNFTFPALFKACAKLQALKEGMQIHGHVFKVGF----ECDLFVQNSLINM 175 (605)
Q Consensus 114 ~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~ 175 (605)
+|++.|..-.+. +.+| |-..=+..+.++...|.+.+|+.++++++..=+ .-+..+||.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 888888776554 2222 111123455666788999999998888876544 3788889988887
Q ss_pred HHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHC-------------------------------CChhHHHHHHHHHH
Q 007396 176 YGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASN-------------------------------GLWSECLKLFGEMN 224 (605)
Q Consensus 176 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-------------------------------g~~~~A~~~~~~m~ 224 (605)
+++.=-++.-. .+...=..-|--||..|.+. .+..--++++....
T Consensus 177 lsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 177 LSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 77542221111 11110011122222222211 11111222222223
Q ss_pred hCCCCCCChhH-HHHHHHHHhccCChhhHHHHHHHHHHhcCC----chHHHHhHHHhHHHhcCCHHHHHHHHhccC--CC
Q 007396 225 NEKCWRPEESI-LVSVLSACTHLGALDLGKCTHGSLIRNISA----LNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DK 297 (605)
Q Consensus 225 ~~g~~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~ 297 (605)
..- +.|+... ...+.....+ +.+.+..+-+.+....+. .-+..+..++....+.++...|.+.+.-+. +|
T Consensus 253 ~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 253 NFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred hhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 333 5565432 2233333333 455555554444433211 124456777777788888888887776554 33
Q ss_pred Cee-------eHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH---HHhccCC-HHHHHHHHHHhH
Q 007396 298 CQL-------TYSVMISGLA----MHGQGKEALSIFSEMLREGLEPDDV-VYVGVLS---ACSHAGL-VNEGLLCFDRMK 361 (605)
Q Consensus 298 ~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~---a~~~~g~-~~~a~~~~~~~~ 361 (605)
+.. +-..+-+..+ ..-+..+-+.+|+......+ |.. ....|+. -+-+.|. -++|..+++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 221 1112222222 12233344556666655433 322 1112222 2334454 788888888877
Q ss_pred HhcCCCC-ChHHHHHHH----HHHHhc---CCH---HHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCChHHHHHH
Q 007396 362 LEYRIVP-TVQHYGCVV----DLMGRA---GML---GEALELIQSMPIQQN----DVVWRSLLSA--SKVHHNLEIGEIA 424 (605)
Q Consensus 362 ~~~~~~p-~~~~~~~li----~~~~~~---g~~---~~A~~~~~~m~~~p~----~~~~~~ll~a--~~~~g~~~~a~~~ 424 (605)
+ +.| |...-|.+. ..|.++ ..+ -+-..++++.++.|- ...-|.|..| +..+|++.++.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3 333 222222211 222221 112 223445555565553 3355666555 5789999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 425 AKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
-.-+.+..| ++.+|..++-......++++|..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 68999999999999999999999997643
No 247
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.49 E-value=14 Score=40.50 Aligned_cols=174 Identities=12% Similarity=0.109 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchH----HHH
Q 007396 45 EEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEE----ALF 117 (605)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~ 117 (605)
+++..+.......+.. |..+...+. ..| +.|+.++|..++++... |+......+..+|++.+.+.+ |++
T Consensus 60 ~ea~~~Le~~~~~~~~-D~~tLq~l~---~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~ 135 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGT-DDLTLQFLQ---NVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQ 135 (932)
T ss_pred hhHHHHHhhhccCCCC-chHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333 666777777 889 99999999999999876 554445556677888777654 455
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHccC-C---------hHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 118 LYNEMFERGVEPDNFTFPALFKACAKLQ-A---------LKEGMQIHGHVFKVG-FECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 118 l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
++.. .+-+++.|-++++.....- . +..|....+.+++.+ ..-+..-.-.-.......|++++|.
T Consensus 136 LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 136 LYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 5542 3446777888887765432 1 233555666666554 2111111112223345678899999
Q ss_pred HHHHh-----cCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 187 AIFKQ-----MDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 187 ~~~~~-----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+++.. ...-+...-+--+..+...++|.+..++-.++...|
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 99832 233345555666777888899999999999988876
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.48 E-value=2.1 Score=44.07 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=94.6
Q ss_pred HHHHhCCCchHHHHHHH--HHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 104 RGFVKEVEFEEALFLYN--EMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
....-+++++++.++.+ ++.. .++ ..-...+++-+-+.|-.+.|+++-. |+. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34455688888777665 2221 122 3346777888888898888887543 322 23455678999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 182 VEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 182 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..++-.+.-.|+.+.-.++-+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999877665 567899999999999999999999887543 44555556666777666666666655
Q ss_pred hcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 262 NISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 262 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
.|- +|....++.-.|+.++..+++.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 551 3344444555666666555543
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=14 Score=40.29 Aligned_cols=110 Identities=20% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHH
Q 007396 105 GFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEF 184 (605)
Q Consensus 105 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (605)
-+-+.|++++|...|-+-... +.| ..+++-|.....+..--.+++.+.+.|+. +...-..|+++|.|.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344668888888877665432 233 23555666666666666777777888875 55556678888888888888
Q ss_pred HHHHHHhcCCCChh--HHHHHHHHHHHCCChhHHHHHHHH
Q 007396 185 ASAIFKQMDQKSVA--SWSAIIAAHASNGLWSECLKLFGE 222 (605)
Q Consensus 185 A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 222 (605)
-.+..+... .... -....+..+-+.+..++|..+-.+
T Consensus 450 L~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 777776665 2111 133445555555555555544433
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.45 E-value=3 Score=34.29 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 265 (605)
.+.-+......|+-+.-.+++.++.+.+ .+++..+..+..||.+.|+..++.+++.++.+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455677788888888888888887654 788888888889999999999998888888888753
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.37 E-value=17 Score=41.35 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCC--ChhHHHHHHHHHHh
Q 007396 200 WSAIIAAHASNG--LWSECLKLFGEMNN 225 (605)
Q Consensus 200 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 225 (605)
.-.+|..|++.+ ..++|+....+.+.
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 335677888877 66777777766654
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.19 E-value=11 Score=38.67 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLE-PDDVVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555566666666555543211 11223444555555555555555555544
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.96 E-value=11 Score=37.87 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHH-HHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYR-IVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVW-RSLLSA 411 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~a 411 (605)
..|...+++-.+..-++.|..+|-+..+ .+ +.+++..+++++..++ .|+..-|..+|+-- ..-||...| .-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3466677777777888999999999984 46 6778888999998776 46778888888764 334555533 445566
Q ss_pred HHhcCChHHHHHHHHHHHhhCC--CCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 412 SKVHHNLEIGEIAAKNLFQINS--HHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...++-+.|..+|+...+.-. .-...|..++.--..-|+...|..+-++|.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 6777888889999985443211 12457888888778888888888777777653
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=9.5 Score=36.28 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=96.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
......|++.+|..+|.......-. +...-..+..++...|+++.|..++..+-.+.. .........-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 3456678888888888887764322 234445577788888888888888887653211 11111122345566666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhH-HHHHHHH
Q 007396 387 GEALELIQSMPIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYD-VAKIRTE 461 (605)
Q Consensus 387 ~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 461 (605)
.+..++-.+..-.| |...--.|...+...|+.+.|.+.+=.+++.+ -.+...-..|+..+.--|.-+. +.+.+++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 66666666664456 44455666777888888888887777776654 3466677778888877775443 3333333
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.59 E-value=4.9 Score=33.82 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
+.|++++|.+.|+.+...+...| .....--++.+|.+.|++++|...+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34555555555555554333222 1233344555555555555555554443
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=92.47 E-value=1.3 Score=38.23 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=9.6
Q ss_pred HHHCCChhHHHHHHHHHHh
Q 007396 207 HASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~ 225 (605)
+-+.|++++|..+|+-+..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~ 65 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI 65 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3345555555555555444
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.44 E-value=2.9 Score=43.15 Aligned_cols=133 Identities=16% Similarity=0.181 Sum_probs=79.8
Q ss_pred HHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 308 GLAMHGQGKEALSIFSEML-REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
.....|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. --++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 4455677777666664111 11111 33456667777777888888776443321 23455678888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 387 GEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 387 ~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.|.++.++.. +...|..|.......|+++.|++.+++.. -+..|+-.|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888777664 66788888888888888888888887743 35567777888888777777776666655
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.37 E-value=9.4 Score=35.55 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGL--EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 384 (605)
..-.+.|++++|.+.|+.+...-. +-...+...++-++.+.++.++|....++..+.++-.||.. |...+.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~-- 118 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSY-- 118 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHH--
Confidence 334566777777777777765421 11234555566666677777777777777766555555542 2233333331
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC-----------------chHHHHHHHH
Q 007396 385 MLGEALELIQSMP-IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP-----------------SDYVLLSNMY 446 (605)
Q Consensus 385 ~~~~A~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~l~~~~ 446 (605)
|..++ ...|.. -...|..-|+.+++.-|++. ..=...++-|
T Consensus 119 --------~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 119 --------FFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred --------hccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 000100 01233333444444444422 1124677889
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 007396 447 ARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~ 465 (605)
.+.|.|..|..-++.|.+.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 9999999999999999875
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.29 E-value=0.34 Score=29.25 Aligned_cols=32 Identities=9% Similarity=-0.017 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35677777778888888888888888887775
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.23 E-value=1.3 Score=39.81 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=93.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHhcC
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV--QHYGCVVDLMGRAG 384 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g 384 (605)
.|-..|-..-|.-=|.+... +.|+. ..||-+.--+...|+++.|.+.|+... .+.|+- .+.|.=|.. --.|
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~y~Ya~lNRgi~~-YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYNYAHLNRGIAL-YYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCcchHHHhccceee-eecC
Confidence 35566666677666766665 77876 467777777889999999999999887 344432 222222222 2358
Q ss_pred CHHHHHHHHHHC----CCCCCHHHHHHHHHH--------------HHhcCChH-------------HHHHHHHHHHhhCC
Q 007396 385 MLGEALELIQSM----PIQQNDVVWRSLLSA--------------SKVHHNLE-------------IGEIAAKNLFQINS 433 (605)
Q Consensus 385 ~~~~A~~~~~~m----~~~p~~~~~~~ll~a--------------~~~~g~~~-------------~a~~~~~~~~~~~~ 433 (605)
++.-|.+-|... |..|-...|--+... +..+.+-. ..+.+++++.....
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 888877655444 434444455444321 11111000 01223333333222
Q ss_pred CC-------CchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 434 HH-------PSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 434 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
++ ..+|.-|+.-|...|..++|..+|+.....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 35688899999999999999999998876554
No 261
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.20 E-value=0.49 Score=28.40 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777778888888888877777753
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.98 E-value=15 Score=37.07 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=45.7
Q ss_pred cCCCChHHHHHHHhhcCCC------------------CcccHHHHHHHHHhCCCchHHHHHHHHHHHCC----CCCCcch
Q 007396 76 SHWGSMDYACSIFRQIDEP------------------GAFDFNTLIRGFVKEVEFEEALFLYNEMFERG----VEPDNFT 133 (605)
Q Consensus 76 y~~g~~~~A~~~f~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t 133 (605)
|+.+.++.|.+.|...... |..-=+..+..+...|++.++..++++|...= ..-|..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3888899988887655421 11223456677888999999999888887643 3367778
Q ss_pred HHHHHHHHHc
Q 007396 134 FPALFKACAK 143 (605)
Q Consensus 134 ~~~ll~~~~~ 143 (605)
|+.++-.+++
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8875544443
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.78 E-value=8.1 Score=33.69 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=80.7
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC--CHHHHHHHHHhcC
Q 007396 116 LFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE--KVEFASAIFKQMD 193 (605)
Q Consensus 116 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~ 193 (605)
++..+.+.+.+++|+...+..+++.+.+.|......+ ++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666777888888899999999998888765444 555665555554444333332211 1344455555543
Q ss_pred CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 194 QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
..+..++..+...|++-+|+++.+...... ......++.+..+.++...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 246667788888999999998887753222 22224455666666655554455544443
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.76 E-value=7.2 Score=32.93 Aligned_cols=115 Identities=13% Similarity=0.192 Sum_probs=67.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
+...-..++..+.+.+.+......++.+...+. .+...++.++..+++.+ .......+.. ..+......++.
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~ 77 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGK 77 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHH
Confidence 344556777888777888888888888887763 56667888888887653 3333333331 123333344566
Q ss_pred HHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHC-CChhHHHHHHHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASN-GLWSECLKLFGE 222 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 222 (605)
.+.+.+.++++.-++..+.. |...+..+... ++.+.|.+.+.+
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 66666666666666665533 22223333333 556666655543
No 265
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.73 E-value=41 Score=41.49 Aligned_cols=314 Identities=14% Similarity=0.110 Sum_probs=173.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHcCCCHHHHHHHHHh-cCCCChhHHHHHHHHHHHCCC
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGF--ECDLFVQNSLINMYGKCEKVEFASAIFKQ-MDQKSVASWSAIIAAHASNGL 212 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 212 (605)
++..+--+.+.+.+|...++.-..... ......+-.+...|+.-+++|...-+... ...++ ...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 334445566778888877776311100 11234455566688888888887777663 33333 2334556677899
Q ss_pred hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 213 WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 213 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
++.|..-|+++.+.+ ++...+++.++...-..+.++...-..+.......+.....++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999865 455778888888777777777666544444333222222223333444466777777666655
Q ss_pred ccCCCCeeeHHHH-HH-HHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH----------H
Q 007396 293 MMADKCQLTYSVM-IS-GLAMHG--QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF----------D 358 (605)
Q Consensus 293 ~m~~~~~~~~~~l-i~-~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~ 358 (605)
..+..+|.+. +. .+.+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++. +
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5566667665 22 222221 1111122333333221111 22222222222222111 1
Q ss_pred HhHHhcCCCCChH------HHHHHHHHHHhcCCHHHHHHHHHHC----CCCC----C-HHHHHHHHHHHHhcCChHHHHH
Q 007396 359 RMKLEYRIVPTVQ------HYGCVVDLMGRAGMLGEALELIQSM----PIQQ----N-DVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 359 ~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~-~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
......+..++.. -|..-+..-....+..+-.--+++. ..+| . ..+|-.....++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111123333221 1211111111111122211111111 1122 2 3389999999999999999998
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 424 AAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
..-.+.+..+ +..+.-.+......|+-..|..+++...+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 8877777664 67889999999999999999999999886554
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.67 E-value=2.4 Score=39.75 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGL----EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCV 376 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 376 (605)
|+.-+.. .+.|++.+|...|...++... .|| .+--|..++...|+.+.|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444333 334556666666666665421 122 23335566666666666666666666554444432 444444
Q ss_pred HHHHHhcCCHHHHHHHHHHC
Q 007396 377 VDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m 396 (605)
.....+.|+.++|...|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 45555555555555555444
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.55 E-value=2.6 Score=44.03 Aligned_cols=130 Identities=19% Similarity=0.136 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHh----cCCHHHHHHHHHHC-CCCCCHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-----QHYGCVVDLMGR----AGMLGEALELIQSM-PIQQNDVVW 405 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~ 405 (605)
.+..+++...-.||-+.+.+.+....+..++.-.. -.|..++..+.- ....+.|.++++.+ ..-|+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34445555566677777777777665432332211 233333333332 44677788888887 445777766
Q ss_pred HHHHH-HHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 406 RSLLS-ASKVHHNLEIGEIAAKNLFQINSH----HPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 406 ~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...-. .+...|+++.|++.+++....... ....+.-++..+.-.++|++|.+.+..+.+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 55543 457788888888888876532211 3345667888888888888888888888764
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.48 E-value=11 Score=34.29 Aligned_cols=197 Identities=16% Similarity=0.085 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHh-cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHH-H
Q 007396 234 SILVSVLSACTHLGALDLGKCTHGSLIRN-ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMIS-G 308 (605)
Q Consensus 234 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~-~ 308 (605)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+......+ ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33334444444444444444444444331 223344445555555666666666666666555321 122333333 6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc
Q 007396 309 LAMHGQGKEALSIFSEMLREGLEP----DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRA 383 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 383 (605)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7788888888888888855 333 233444444446677888999988888873 2223 366777788888888
Q ss_pred CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 384 GMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 384 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+.++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8889998888877 44454 345555555555677799999999999888875
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.28 E-value=3.2 Score=40.31 Aligned_cols=152 Identities=13% Similarity=-0.011 Sum_probs=66.0
Q ss_pred HHHCCChhHHHHHHHHHHhCCC-CCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhc--CCch---HHHHhHHHhHHHh
Q 007396 207 HASNGLWSECLKLFGEMNNEKC-WRPEESILVSVLSACTHLGALDLGKCTHGSLIRNI--SALN---VIVETSLIDMYVK 280 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~li~~y~~ 280 (605)
+....+.++|+..+.+-...-. ..---.+|..+..+.+..|.++++...--..++.- .... -..|-.+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766554210 11122355556666666666655543321111110 0111 1222333333333
Q ss_pred cCCHHHHHHHHhcc---CCCC-----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhcc
Q 007396 281 CGCLEKGLCLFRMM---ADKC-----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-D----DVVYVGVLSACSHA 347 (605)
Q Consensus 281 ~g~~~~A~~~f~~m---~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~ 347 (605)
.-++.+++.+-..- +..+ ....-+|..++.-.+.++++++.|+...+---.. | -..+..|-+.|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333333332211 1000 1122334445555555666666666554321111 1 13455555566666
Q ss_pred CCHHHHHHHHH
Q 007396 348 GLVNEGLLCFD 358 (605)
Q Consensus 348 g~~~~a~~~~~ 358 (605)
.|.++|.-+..
T Consensus 176 ~D~~Kal~f~~ 186 (518)
T KOG1941|consen 176 KDYEKALFFPC 186 (518)
T ss_pred HhhhHHhhhhH
Confidence 66666655443
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.97 E-value=3.8 Score=33.63 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=53.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCCHH---HHHHHHHHHHhc
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQNDV---VWRSLLSASKVH 415 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~---~~~~ll~a~~~~ 415 (605)
+.+..|+++.|++.|.+... -.+-....||.-..++.-.|+.++|++=+++. +-+ ... .|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 34556666666666666552 22234556666666666666666666655554 111 111 233333457788
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 007396 416 HNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~ 434 (605)
|+.+.|..-|+..-+++.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888888764
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=3.1 Score=35.97 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=58.0
Q ss_pred HcCCCHHHHHHHHHhcCCCChhHHHHHH-----HHHHHCCChhHHHHHHHHHHhCCCCCCChh-HHHHHHHH--HhccCC
Q 007396 177 GKCEKVEFASAIFKQMDQKSVASWSAII-----AAHASNGLWSECLKLFGEMNNEKCWRPEES-ILVSVLSA--CTHLGA 248 (605)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-t~~~ll~a--~~~~~~ 248 (605)
+..+..++|+.-|..+.+.+.-.|-.|. ...++.|+...|+..|++.-... -.|-.. -..-+=.+ +...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhcccc
Confidence 3445556666666665544433333322 23455666666666666665443 233222 11111111 233444
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD 296 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 296 (605)
++....-.+-+...+-+.....-.+|.-+-.|.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444444444333333334444555566666666677777666666543
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.39 E-value=20 Score=35.70 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH----HPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
...+|..+...+++.|+++.|...+.++.+.++. .+.....-+......|+..+|.+.++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999886632 456777788899999999999999988877433
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.20 E-value=3.4 Score=39.70 Aligned_cols=115 Identities=11% Similarity=-0.011 Sum_probs=90.6
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHH----HHHHHHHHhcCChH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVVW----RSLLSASKVHHNLE 419 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~----~~ll~a~~~~g~~~ 419 (605)
-.|...+|-..++++.+ ..+.|...+...=+++.-.|+.+.-...++++ |. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35777788888888885 45667777777888899999999888888887 43 5665433 23333557889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+|++..++..++++.|.-+...+..++...|+..++.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999998888888888888899999988876554
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.20 E-value=27 Score=36.70 Aligned_cols=378 Identities=11% Similarity=0.084 Sum_probs=218.6
Q ss_pred hccccccccCcc-CCCChHHHHHHHhhcCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007396 65 CASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKA 140 (605)
Q Consensus 65 ~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 140 (605)
.++.|| .-- ...+.+.++.+++.+.. |...- |-....-=.+-|..+.+..+|++-+.. ++-+...|...+.-
T Consensus 47 ~wt~li---~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 47 AWTTLI---QENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred chHHHH---hccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 344555 333 45555677777777654 55443 444444445668888899999888763 55555566655554
Q ss_pred HH-ccCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHH---HC----
Q 007396 141 CA-KLQALKEGMQIHGHVFKV-GFE-CDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHA---SN---- 210 (605)
Q Consensus 141 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~---~~---- 210 (605)
+. ..|+.+.....|+.++.. |.. .....|-..|..-..++++.....+++++.+--...++..-..|. +.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 347788888888887765 321 244567777777778888889999998887644444444444433 22
Q ss_pred --CChhHHHHHHHHHHhC---CCCCCChhHHHHHHHHHhc-cCChhhHHHH------------------------HHHHH
Q 007396 211 --GLWSECLKLFGEMNNE---KCWRPEESILVSVLSACTH-LGALDLGKCT------------------------HGSLI 260 (605)
Q Consensus 211 --g~~~~A~~~~~~m~~~---g~~~p~~~t~~~ll~a~~~-~~~~~~a~~~------------------------~~~~~ 260 (605)
-..+++.++-...... +...+.......-+.--.. .+.++....+ ++.-+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2234444433332210 0011111222222211111 1112222211 11111
Q ss_pred Hh-------cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 261 RN-------ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 261 ~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+. -..++..+|+..++.-.+.|+.+.+.-+|++..-+- ...|-..+.-.-..|+.+-|..++....+--+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 11 012345677777777788888888888888776442 23344444444444777777777666554322
Q ss_pred C--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHHC-CCCCCHH
Q 007396 331 E--PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRAGMLGEAL---ELIQSM-PIQQNDV 403 (605)
Q Consensus 331 ~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~ 403 (605)
+ |....+.+. -+-..|+.+.|..+++.+..+. |+. ..-..-+....+.|..+.+. +++... +.+-+..
T Consensus 363 k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 363 KKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred CCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 2 222223222 2445789999999999998643 553 33334456677888888887 555544 2233333
Q ss_pred HHHHHHH-----HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 404 VWRSLLS-----ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 404 ~~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
+...+.- -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3333332 23556889999999999999999999999998888776653
No 275
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.13 E-value=31 Score=37.39 Aligned_cols=48 Identities=17% Similarity=0.003 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHhhcCC--C---CcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE--P---GAFDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
+.+.+++|..+-+.... + -...+-..|..+.-.|++++|-.+.-.|..
T Consensus 368 ~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 56777888877766554 1 223477788888888888888777777753
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.01 E-value=1.7 Score=41.31 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5556666677777777777777777777777777777777777777777777777776654
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.85 E-value=2.6 Score=36.23 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=22.0
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
.++.+.++.++..+.-+.|..+..-..-+..+...|+|.+|..+++.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444444444444443
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.71 E-value=0.72 Score=28.36 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778889999999999999988854
No 279
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.55 E-value=5.2 Score=31.09 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 355666666666555422 333333344567789999999999999999999999887654 66777888888888888
Q ss_pred CCCCCCChhHHHH
Q 007396 226 EKCWRPEESILVS 238 (605)
Q Consensus 226 ~g~~~p~~~t~~~ 238 (605)
+| .|...+|..
T Consensus 97 sg--~p~lq~Faa 107 (115)
T TIGR02508 97 SG--DPRLQTFVA 107 (115)
T ss_pred CC--CHHHHHHHH
Confidence 87 666665543
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.34 E-value=1.5 Score=38.74 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 380 MGRAGMLGEALELIQSM----PIQQ---NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
+.+.|.+++|..-|.+. |--+ ..+.|..-..+..+.+.++.|+.-..+.++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45667777777766655 2111 1234555556778899999999999999999998777777788899999999
Q ss_pred hHHHHHHHHHHhCC
Q 007396 453 YDVAKIRTEMASKG 466 (605)
Q Consensus 453 ~~a~~~~~~m~~~~ 466 (605)
++|..=++.+.+.+
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998865
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.06 E-value=26 Score=34.96 Aligned_cols=146 Identities=8% Similarity=-0.051 Sum_probs=70.8
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHH
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP---DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT--VQHY 373 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~ 373 (605)
..+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++..... .+..+ ....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 3467777777788888888888777776543211 1222333344455567777777777766631 11111 1111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHHCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 374 GCVVDLMGRAGMLGEALEL-IQSMPIQQNDVVWRSLLSASKV------HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
..+...+.. ..+..... ......+.-...+..+..-+.. .++.+.+...++.+.+..|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111100000 00000000 0000000001122222222223 37788888999999998887766766666555
Q ss_pred H
Q 007396 447 A 447 (605)
Q Consensus 447 ~ 447 (605)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.72 E-value=3.5 Score=34.78 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=33.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666666666666666666655556666666666666666666665544
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=42 Score=36.80 Aligned_cols=140 Identities=11% Similarity=0.147 Sum_probs=80.2
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 152 (605)
+.+ +.|++++|..-+-+... ..--..+|.-|....+..+--..++.+.+.|+. +...-..||.+|.+.++.+.-.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 444 88999999887766432 111123566666666677777788888888864 55555778888999888887666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
+.+..- .|.. .+-....+..+-+.+-.++|..+-..... +......+ +-..|++++|++.+..+
T Consensus 453 fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 453 FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 554432 1111 11123344455555555555555444332 22222222 23456666666666654
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.57 E-value=3.3 Score=39.35 Aligned_cols=76 Identities=9% Similarity=0.148 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHh-----CCCCCCChhHHH
Q 007396 166 LFVQNSLINMYGKCEKVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGEMNN-----EKCWRPEESILV 237 (605)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~p~~~t~~ 237 (605)
..++..++..+..+|+.+.+.+.++++.+. |...|..++.+|.+.|+...|+..|+++.. .| +.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg-i~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG-IDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC-CCccHHHHH
Confidence 356777888899999999999999888753 667899999999999999999999998865 45 666665554
Q ss_pred HHHHH
Q 007396 238 SVLSA 242 (605)
Q Consensus 238 ~ll~a 242 (605)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.47 E-value=13 Score=36.20 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHHc--c----CChHHHHHHHHHHHHhCC---CCchhHHHHHHHH
Q 007396 112 FEEALFLYNEMFERGVEPDNFTFPALFKACAK--L----QALKEGMQIHGHVFKVGF---ECDLFVQNSLINM 175 (605)
Q Consensus 112 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~ 175 (605)
+++.+.+++.|.+.|.+-+.++|.+..-.... . ....++..+|+.|.+.-+ .++..++.+|+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 34567889999999998888887765444333 1 235568888888887643 3445556655544
No 286
>PRK09687 putative lyase; Provisional
Probab=88.26 E-value=25 Score=33.86 Aligned_cols=181 Identities=8% Similarity=-0.010 Sum_probs=80.5
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCCh----hHHHHHHHHHHhCCCCCCChhHHHH
Q 007396 163 ECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLW----SECLKLFGEMNNEKCWRPEESILVS 238 (605)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~p~~~t~~~ 238 (605)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .|+...-..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHH
Confidence 345555555566666666543333333333445555555556666666653 3566666665332 355555555
Q ss_pred HHHHHhccCChhh--HHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcC-CH
Q 007396 239 VLSACTHLGALDL--GKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHG-QG 315 (605)
Q Consensus 239 ll~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~ 315 (605)
.+.++...+.... ...........-..++..+-...+.++++.|+.+....+..-+..+|...-...+.++.+.+ ..
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 5555544432111 11222222222223344555555555555555332222223333333333333333333322 12
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 007396 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL 349 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 349 (605)
.++...+..+.. .+|...-...+.++.+.|+
T Consensus 191 ~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 191 PDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 344444444442 2344444444455555554
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.77 E-value=27 Score=33.64 Aligned_cols=17 Identities=6% Similarity=-0.273 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHHH
Q 007396 412 SKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~ 428 (605)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44556666666666543
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.10 E-value=2.5 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=11.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 99 FNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
|..+...|.+.|++++|.++|++.++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.04 E-value=31 Score=33.53 Aligned_cols=118 Identities=13% Similarity=0.193 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCH
Q 007396 315 GKEALSIFSEMLREGLEPDDVVYVGVLSACSH--AG----LVNEGLLCFDRMKLEYRIVP--TVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 386 (605)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++++.+-. +...+..|+.. ..+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788999999998888877764433332 22 35678889999998776543 33444444333 33333
Q ss_pred ----HHHHHHHHHC---CCCC-CHH-HHHHHHHHHHhcCC--hHHHHHHHHHHHhhCCC
Q 007396 387 ----GEALELIQSM---PIQQ-NDV-VWRSLLSASKVHHN--LEIGEIAAKNLFQINSH 434 (605)
Q Consensus 387 ----~~A~~~~~~m---~~~p-~~~-~~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~ 434 (605)
++++.+|+.+ ++.. |.. ....++..+....+ ...+..+++.+.+.+-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 3344444444 4433 222 33333333322222 33556666666666533
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.71 E-value=1.7 Score=26.72 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
+|..|...|...|++++|+.++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888999999999999886544
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.60 E-value=1.5 Score=26.25 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
+|..+...+...|+.++|...+++..+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666777777777777777777666
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.43 E-value=28 Score=32.49 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=106.2
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---ee---eHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QL---TYSVMISGLAMHGQGKEALSIFSEMLREG-LEPDDVVYV 338 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 338 (605)
|-...|+.- ..-.+.|++++|.+.|+.+..+. .. +--.++.++-+.+++++|+..+++..+.- -.|| .-|.
T Consensus 33 p~~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 334445443 34457899999999999998543 22 33445667889999999999999988743 3343 3344
Q ss_pred HHHHHHh---cc----CCHHHHHHH---HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHH-HH-H
Q 007396 339 GVLSACS---HA----GLVNEGLLC---FDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDV-VW-R 406 (605)
Q Consensus 339 ~ll~a~~---~~----g~~~~a~~~---~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~-~ 406 (605)
..|.+.+ .. .|...+.+- |+.++.++ ||. .-..+|..-+..+. |.. -+ .
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHH
Confidence 4444444 21 222223333 33333221 221 11122222221110 111 11 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPS---DYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.+..-|.+.|.+..|..-++.+++.-|+.+. .+..|..+|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 2344578889999999999999988665443 4567888899999999998887666543
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.25 E-value=6 Score=35.10 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=43.6
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc--chHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007396 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN--FTFPALFKACAKLQALKEGMQIHGHVFKV 160 (605)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 160 (605)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|+.+...+++..+.....++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667777788888888888888887776444332 24566777777777877777776666543
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.97 E-value=3.4 Score=39.29 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=58.7
Q ss_pred CCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC-C------CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 007396 58 GFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE-P------GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP 129 (605)
Q Consensus 58 g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 129 (605)
|...+..+...++ ..- ...+++++...+-+... | +... .+.++.+. .-++++++.++..=...|+-|
T Consensus 59 g~~~s~~~Vd~~V---~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLV---DVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhh---hccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 4444444455555 555 56777777776666543 1 1111 11222222 235667777777777777777
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007396 130 DNFTFPALFKACAKLQALKEGMQIHGHVFKVG 161 (605)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 161 (605)
|.++++.+|+.+.+.++...|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 77777777777777777777777666666553
No 295
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.91 E-value=5.3 Score=33.05 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=52.0
Q ss_pred hcCChHHHHHHHHHHHh-hCCCC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCC
Q 007396 414 VHHNLEIGEIAAKNLFQ-INSHH-PSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRS 491 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 491 (605)
...+..+++.+++.+.+ -.|.. .....-|.-++.+.|+++.+.++.+...+..
T Consensus 47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e------------------------- 101 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE------------------------- 101 (149)
T ss_pred chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC-------------------------
Confidence 34567788888988887 33442 3344557778889999999999998887643
Q ss_pred CcchHHHHHHHHHHHHHHHHCCcc
Q 007396 492 HPAWDNIYEMIHQMEWQLKFEGYS 515 (605)
Q Consensus 492 ~~~~~~~~~~l~~l~~~m~~~g~~ 515 (605)
|+.+++.++=+.+.+.|.+.|++
T Consensus 102 -~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 102 -PNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred -CCcHHHHHHHHHHHHHHhhccee
Confidence 23345555555566788888764
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.84 E-value=9.5 Score=33.84 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhccCCCCe------eeHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 270 VETSLIDMYVKCGCLEKGLCLFRMMADKCQ------LTYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 270 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
.+..+.+.|.+.|+.+.|.+.|.++.+..+ ..+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455566666666666666666666554321 234444555555555555555555443
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.60 E-value=23 Score=30.58 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=55.6
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChH
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRAGMLGEALELIQSMP-IQQNDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~ 419 (605)
..-...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-..|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33446678888888888876 445543 222223344677889999999998883 3344455566777665555444
Q ss_pred HHHHHHHHHHhhCC
Q 007396 420 IGEIAAKNLFQINS 433 (605)
Q Consensus 420 ~a~~~~~~~~~~~~ 433 (605)
.=....+++++.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 45555666666654
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.90 E-value=37 Score=32.37 Aligned_cols=58 Identities=10% Similarity=-0.080 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.....|...|.+.+|.++.++++.++|-+...+-.|++.|+..|+--+|.+-++++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3345789999999999999999999999999999999999999998888888877753
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.38 E-value=8.9 Score=29.99 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
-+..+-+..+....+.|+.....+.|.||-+.+++..|.++|+.++.+.|- ....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 355566666666778899999999999999999999999999998865443 33377766643
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.14 E-value=1.9 Score=26.13 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 155 GHVFKVGFECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
++.++..+. +...|+.|...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 334444422 5666666666666666666664
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.05 E-value=0.89 Score=38.76 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 318 (605)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666777788888888888888777667788889999999998877777777773332 4445566666666766666
Q ss_pred HHHHHHH
Q 007396 319 LSIFSEM 325 (605)
Q Consensus 319 ~~~~~~m 325 (605)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6665554
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.60 E-value=2.8 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777788888888888888887766
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.15 E-value=12 Score=28.99 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVD 378 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 378 (605)
+..++.+-+..+....+.|+.....+.|.||-+.+++..|.++|+..+.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777778899999999999999999999999999998874433 24456666653
No 304
>PRK09687 putative lyase; Provisional
Probab=83.11 E-value=46 Score=32.10 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=109.3
Q ss_pred cCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh----HHHHHHHHHHHHhCCCCch
Q 007396 91 IDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL----KEGMQIHGHVFKVGFECDL 166 (605)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~~ 166 (605)
+..+|....-..+.++...|. .++...+..+... +|...=...+.+++..|+. .++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 344565556666666665554 3444444444432 3444444455556666653 3344444444222 4455
Q ss_pred hHHHHHHHHHHcCCCH-----HHHHHHHHh-cCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHH
Q 007396 167 FVQNSLINMYGKCEKV-----EFASAIFKQ-MDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll 240 (605)
.+-...+.+++..+.- ..+...+.. +..++...--..+.++.+.++ .+++..+-.+... +|...-...+
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~ 180 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHH
Confidence 5555555555554321 122333322 223444444455555555554 4556666555542 2333333444
Q ss_pred HHHhccC-ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHH-hccCCCCeeeHHHHHHHHHhcCCHHHH
Q 007396 241 SACTHLG-ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLF-RMMADKCQLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 241 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f-~~m~~~~~~~~~~li~~~~~~g~~~~A 318 (605)
.++.+.+ ....+...+..+. ..++..+-...+.++++.|+.. |...+ +.+..++ ..-..+.++...|.. +|
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hH
Confidence 4444332 1222333333333 2345555666666666666633 33333 3333322 223455566666664 56
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007396 319 LSIFSEMLREGLEPDDVVYVGVLSAC 344 (605)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~a~ 344 (605)
+..+.++.+. .||...-...+.+|
T Consensus 254 ~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhh--CCChhHHHHHHHHH
Confidence 6666666542 33444444444444
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.66 E-value=0.54 Score=40.13 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=54.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHH
Q 007396 137 LFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 216 (605)
+++.+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566777888888888888777777777664332 3334455666666666666
Q ss_pred HHHHHHHH
Q 007396 217 LKLFGEMN 224 (605)
Q Consensus 217 ~~~~~~m~ 224 (605)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66666543
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.53 E-value=23 Score=37.15 Aligned_cols=148 Identities=15% Similarity=0.018 Sum_probs=100.2
Q ss_pred hcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
-.|+++.|..++-.++++ .-+.++.-+-..|..++|+++ .+|.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 356777777666666532 344455566667777776643 33332 2222 245688888888765
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 543 55678899999999999999999998763 36677777778888877667766666665543
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
.-..+|...|+++++.+++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 233467888999999888754
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.45 E-value=17 Score=30.76 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=25.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPT---VQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
..++.+++..+++.|. -+.|+ ..++. .-.+.+.|++++|..+|++.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhh
Confidence 4566666666666665 33343 22222 22345566666666666666
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.14 E-value=9.9 Score=25.85 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCc
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGY 514 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 514 (605)
...++-++.+.|++++|.+..+.+.+.. |...++..+-+.+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccCC
Confidence 4567788999999999999999998732 4456666666667788888774
No 309
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.08 E-value=2.2 Score=23.95 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHH
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677888888888888887765
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.53 E-value=70 Score=33.13 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=94.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
|-...-+++..+.++..++-...+-.+|..-| -+...|..++..|... ..+.-..+++++++..+. |++...-|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 33456677888888888888888888888855 5777888888888877 556677788888877654 555566677
Q ss_pred hHHHhcCCHHHHHHHHhccCCC------Ce---eeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 007396 276 DMYVKCGCLEKGLCLFRMMADK------CQ---LTYSVMISGLAMHGQGKEALSIFSEMLRE-GLEPDDVVYVGVLSACS 345 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~ 345 (605)
..|-+ ++.+.+...|.+...+ +. ..|.-++..- ..+.+..+.+..+.... |..--.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 77766 7778887777765321 11 1333333210 22333444444443321 22222333444444455
Q ss_pred ccCCHHHHHHHHHHhH
Q 007396 346 HAGLVNEGLLCFDRMK 361 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~ 361 (605)
...++++|.+++..+.
T Consensus 217 ~~eN~~eai~Ilk~il 232 (711)
T COG1747 217 ENENWTEAIRILKHIL 232 (711)
T ss_pred cccCHHHHHHHHHHHh
Confidence 5555555555555554
No 311
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.05 E-value=37 Score=29.65 Aligned_cols=39 Identities=5% Similarity=0.030 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 007396 152 QIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFK 190 (605)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (605)
++.+.+.+.++.|+...+..+|+.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344445566677777777777777777776655544443
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.54 E-value=12 Score=29.02 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHH-HhCCCCchhHHHHHH
Q 007396 114 EALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVF-KVGFECDLFVQNSLI 173 (605)
Q Consensus 114 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 173 (605)
++.+-++.+....+.|++....+.++||.+.+|+..|.++++-+. +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 344555555556677888888888888888888888888887665 3332 333555443
No 313
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=80.46 E-value=27 Score=27.70 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
...++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 457788888888877764 234444444566778899999965555566788888877755 47788888888888887
Q ss_pred hCCCCCCChhHHH
Q 007396 225 NEKCWRPEESILV 237 (605)
Q Consensus 225 ~~g~~~p~~~t~~ 237 (605)
.+| .|....|.
T Consensus 97 ~~g--~~~~q~Fa 107 (116)
T PF09477_consen 97 SSG--SPELQAFA 107 (116)
T ss_dssp T-S--SHHHHHHH
T ss_pred hCC--CHHHHHHH
Confidence 776 45444443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.44 E-value=3.4 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.++..|+..|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888999999999999999888765
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.31 E-value=4.6 Score=38.90 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=76.9
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNL 418 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 418 (605)
+-|.+.|.+++|...|.... .+.| |+.+|..-..+|.+..++..|+.=.... .+.. -...|.--..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45889999999999998776 4556 8888888888999999888777655443 1111 122455555555667899
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 419 EIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 419 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
++|.+-++.+++++|.+. -|-..|++.....++.-
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKI 216 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhH
Confidence 999999999999999843 34445555555544433
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.83 E-value=3.7 Score=24.36 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
..+..++..|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999998764
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.74 E-value=45 Score=29.20 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHH--HHHHhcC
Q 007396 309 LAMHGQGKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQ-HYGCVV--DLMGRAG 384 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li--~~~~~~g 384 (605)
+++.+..++|+.-|..+.+.|...-.+ .-........+.|+...|...|+++-.+..+ |.+. -...|= -++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 456777788888888887766542221 1112223455677778888888777643222 2211 111111 1234556
Q ss_pred CHHHHHHHHHHCC--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 385 MLGEALELIQSMP--IQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 385 ~~~~A~~~~~~m~--~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
.+++.....+.+. -.|- ...-..|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666665552 1121 11223333344455555555555555543
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.50 E-value=37 Score=34.59 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=45.8
Q ss_pred HHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 380 MGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
+...|.++.+.+.+... -+.....+...++......|++++|....+.++..+..++.....-...--..|-+|++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44456666666655544 1222344555566666666666666666666665554444433333333334455666666
Q ss_pred HHHHHHhCC
Q 007396 458 IRTEMASKG 466 (605)
Q Consensus 458 ~~~~m~~~~ 466 (605)
.+++....+
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 666665433
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.11 E-value=17 Score=28.55 Aligned_cols=48 Identities=6% Similarity=0.075 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 396 MPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 396 m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+..-|++.+..+.|.||++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 356788889999999999999999999999988866544343554443
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.44 E-value=60 Score=29.97 Aligned_cols=21 Identities=0% Similarity=-0.201 Sum_probs=10.9
Q ss_pred hcCChHHHHHHHHHHHhhCCC
Q 007396 414 VHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~ 434 (605)
..+++.+|+.+|+++....-+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344555555665555544433
No 321
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.05 E-value=35 Score=32.59 Aligned_cols=64 Identities=8% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-C---CCCCHHHHHHHHHHHHhcCChH
Q 007396 356 CFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-P---IQQNDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 356 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p~~~~~~~ll~a~~~~g~~~ 419 (605)
+.+.+...++-.++..+....+..++..+++.+-.++++.. + ..-|...|..+|..-...||..
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 33344444455566666666666666666666666666554 1 1123334444444444444443
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.04 E-value=15 Score=33.03 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh---cCCchHHHHhHHHhHHHhcCCHHHHH
Q 007396 214 SECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN---ISALNVIVETSLIDMYVKCGCLEKGL 288 (605)
Q Consensus 214 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~ 288 (605)
++|.+.|-++...+ ..+....-..+..+-...+.+++.+++..+.+. +-.+|+.++.+|++.|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTP--ELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666666655 223333333333344455666666666666532 22567778888888888888877764
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.85 E-value=12 Score=33.78 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
.+.-+..+.+.+++++|+...+.- ..+|.. ..-..|+..++..|++++|..-++-.-++.|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566777888888888877654 556644 356667778888899999988888888888764
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.97 E-value=7.2 Score=23.12 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.+|..++..|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998875
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.32 E-value=13 Score=36.08 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=59.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007396 306 ISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 384 (605)
.+-|.++|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|+.--..... .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 3569999999999999998775 567 889999999999998888877765554441 1123456666654
Q ss_pred -------CHHHHHHHHHHC-CCCCCH
Q 007396 385 -------MLGEALELIQSM-PIQQND 402 (605)
Q Consensus 385 -------~~~~A~~~~~~m-~~~p~~ 402 (605)
...+|.+=++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 444444444433 456663
No 326
>PRK10941 hypothetical protein; Provisional
Probab=74.31 E-value=30 Score=33.04 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+-.-+-+|.+.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456667788999999999999999999999998888888889999999999999888877643
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.30 E-value=1.4e+02 Score=32.65 Aligned_cols=56 Identities=14% Similarity=0.266 Sum_probs=30.7
Q ss_pred CCCChHHHHHHHhhcC---CCCcccHHHHHHHHHhCCCc-------hHHHHHHHHHHHCCCCCCcc
Q 007396 77 HWGSMDYACSIFRQID---EPGAFDFNTLIRGFVKEVEF-------EEALFLYNEMFERGVEPDNF 132 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g~~p~~~ 132 (605)
|||++++|.++..+.. .+....+-..+..|..+.+- +....-|++..+.....|++
T Consensus 123 R~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 123 RCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred hcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 9999999999884333 23445666777777665332 24445555555443322443
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.95 E-value=1.3e+02 Score=32.30 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc-cCChhhHHHHHHHHHHhc
Q 007396 212 LWSECLKLFGEMNNEKCWRPEESILVSVLSACTH-LGALDLGKCTHGSLIRNI 263 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~ 263 (605)
+.+.|+.+|.+.-+.| .|+...+...+.-... ..+...|.++|....+.|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444555555555554 4444444333333222 234455555555555555
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.92 E-value=7.2 Score=22.78 Aligned_cols=23 Identities=4% Similarity=-0.154 Sum_probs=11.0
Q ss_pred HHHhcCChHHHHHHHHHHHhhCC
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
++...|+.++|...++++.+..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 34444455555555555544444
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.59 E-value=5.3 Score=23.41 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567888999999999999999998864
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.58 E-value=1.1e+02 Score=31.29 Aligned_cols=197 Identities=10% Similarity=0.017 Sum_probs=85.4
Q ss_pred HHHHHCCCCCCcch--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 007396 120 NEMFERGVEPDNFT--FPALFKACAKLQALKEGMQIHGHVFKVGFECDLF--VQNSLINMYGKCEKVEFASAIFKQMDQK 195 (605)
Q Consensus 120 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~ 195 (605)
+.+.+.|..|+... -.+.+..++..|+.+ +.+.+++.|..|+.. .....+...++.|+.+.+..+++.-...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 33334555554321 223344444556654 333444555444322 1122344555667777776666543321
Q ss_pred C----hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHH--HHHHHHHhccCChhhHHHHHHHHHHhcCCchHH
Q 007396 196 S----VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESIL--VSVLSACTHLGALDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 196 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 269 (605)
+ ...+ +.+...+..|+. ++++.+.+.| ..|+.... .+.+...+..|+.+..+.+ .+.|..++..
T Consensus 95 ~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~g-ad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~ 164 (413)
T PHA02875 95 DDVFYKDGM-TPLHLATILKKL----DIMKLLIARG-ADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIE 164 (413)
T ss_pred cccccCCCC-CHHHHHHHhCCH----HHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCC
Confidence 1 1111 222333344554 3334444455 45443211 1233334455555443333 3344332211
Q ss_pred --HHhHHHhHHHhcCCHHHHHHHHhccCCCCee---eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007396 270 --VETSLIDMYVKCGCLEKGLCLFRMMADKCQL---TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD 334 (605)
Q Consensus 270 --~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 334 (605)
...+-+...+..|+.+-+.-+++.-...+.. ...+.+..-+..|+.+ +.+-+.+.|..++.
T Consensus 165 d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 165 DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 1222334445567766666666544433322 1223333334455543 44445556666654
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.37 E-value=37 Score=30.52 Aligned_cols=66 Identities=8% Similarity=-0.052 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHCCChhHH
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD-------QKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A 216 (605)
|.+.|-.+...+.--++....+|...|.+ .+.+++..++.... ..|+..+.+|++.|.+.|+++.|
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33333334444433344444444444442 23344443333221 22344455555555555554444
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.04 E-value=37 Score=32.68 Aligned_cols=102 Identities=6% Similarity=0.003 Sum_probs=72.6
Q ss_pred hCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-CCh-----hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCCh
Q 007396 160 VGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-KSV-----ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEE 233 (605)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~ 233 (605)
.|......+...++..-....+++++...+-.+.. ++. .+-.++++. +..-+.++++.++..=.+-| +-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYG-iF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYG-IFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhc-cccch
Confidence 34455556666677766667788888888777653 211 111122333 33446779999998888899 99999
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 007396 234 SILVSVLSACTHLGALDLGKCTHGSLIRNI 263 (605)
Q Consensus 234 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 263 (605)
+++..+|+.+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999998888877777554
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.76 E-value=9.7 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
.+++.|...|...|++++|+.+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777888888888888888877654
No 335
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.07 E-value=1.2e+02 Score=30.90 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
...|+.-|...|.+.+|...++++ |+--..+++.+++.+..+.|+.+.-..+++.....+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 346778889999999999999998 444466788999999888888776666666655543
No 336
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.86 E-value=80 Score=28.82 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh-HHHHHHHH--HHHCCChhHHHHHHHHHHhCC
Q 007396 166 LFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA-SWSAIIAA--HASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~g 227 (605)
+.+||-|.-.+...|+++.|.+.|+..-+-|+. -|..+=++ +---|++.-|.+-|.+.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 567777777778888888888888887765432 22222222 223577777777666665544
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.08 E-value=43 Score=26.23 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=33.3
Q ss_pred HhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG 329 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (605)
+..+...|++++|..+.+.+..||...|-++-. -+.|..+++..-+.+|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344556777777777777777777777766543 34555556666666665554
No 338
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.89 E-value=51 Score=35.95 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHCCC-------hhHHHHHHHHHHhCC
Q 007396 166 LFVQNSLINMYGKCEKVEFASAIFKQMD---QKSVASWSAIIAAHASNGL-------WSECLKLFGEMNNEK 227 (605)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 227 (605)
..+| ++|-.+.|||++++|.++..+.. ++....+-..+..|+...+ -++...-|++.....
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3344 36667778888888888883332 2333456666666665432 234555566555443
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.10 E-value=1.6e+02 Score=31.66 Aligned_cols=224 Identities=8% Similarity=-0.025 Sum_probs=109.1
Q ss_pred HHHHHHHHHhccC-----ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh-cCCHHHHHHHHhccCCCC-eeeHHHHHH
Q 007396 235 ILVSVLSACTHLG-----ALDLGKCTHGSLIRNISALNVIVETSLIDMYVK-CGCLEKGLCLFRMMADKC-QLTYSVMIS 307 (605)
Q Consensus 235 t~~~ll~a~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~-~~~~~~li~ 307 (605)
....+..+|.+.. +.+.|..++....+.|.+ +....-..+..... -.+...|.++|....... +.+.-.+..
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~ 368 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLAL 368 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444444554432 566788888888888843 44333222222222 246788999988776443 222222222
Q ss_pred HH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH---
Q 007396 308 GL----AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM--- 380 (605)
Q Consensus 308 ~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--- 380 (605)
.| ....+.+.|..++.+..+.| .|...--...+..+.. +..+.+...+..+. ..|..-....-..+++..
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEED 445 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhcccc
Confidence 11 22346788888888888877 4443333333444444 66666655555554 233221111111111111
Q ss_pred Hh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc---
Q 007396 381 GR----AGMLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA--- 449 (605)
Q Consensus 381 ~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 449 (605)
.. ..+...+..++.+...+-+......|-..|.. ..+.+.+...+.+....+ +.....|..++..-
T Consensus 446 ~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~ 522 (552)
T KOG1550|consen 446 LFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGI 522 (552)
T ss_pred ccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCc
Confidence 00 12344555555555333334444444433322 224566666666655544 33444455555321
Q ss_pred CChhHHHHHHHHHHhC
Q 007396 450 QRWYDVAKIRTEMASK 465 (605)
Q Consensus 450 g~~~~a~~~~~~m~~~ 465 (605)
..+..|.++++...+.
T Consensus 523 ~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 523 KVLHLAKRYYDQASEE 538 (552)
T ss_pred chhHHHHHHHHHHHhc
Confidence 1156666766666553
No 340
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.09 E-value=73 Score=30.50 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=77.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHH-CCCCCCcchHHHHHHHHHc-cC-ChHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 007396 99 FNTLIRGFVKEVEFEEALFLYNEMFE-RGVEPDNFTFPALFKACAK-LQ-ALKEGMQIHGHVFKV-GFECDLFVQNSLIN 174 (605)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 174 (605)
|..|+. ++....+|+.+|+.... ..+--|......+++.... .+ .+..--++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666654 23446677787774322 2355577777777776655 22 222233444444432 45667788888889
Q ss_pred HHHcCCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHCCChhHHHHHH
Q 007396 175 MYGKCEKVEFASAIFKQMD-----QKSVASWSAIIAAHASNGLWSECLKLF 220 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 220 (605)
.+++.++++.-.++++... ..|...|..+|..-...|+..-...+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 9999999999888887754 347778999999999999876554443
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.42 E-value=10 Score=21.14 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
|..+...+...++.+.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33344444455555555555555554443
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.09 E-value=9.8 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=25.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.+.-++.+.|+++.|.+..+.+++.+|+|...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34557889999999999999999999987543
No 343
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.66 E-value=1.3e+02 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH---CCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc
Q 007396 199 SWSAIIAAHAS---NGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL 246 (605)
Q Consensus 199 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~ 246 (605)
.+..+++++.+ ..+.+.|+..+..|.+.| ..|....-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G-~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAG-EDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhh
Confidence 34455555554 478888999999999888 677655555555554333
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.94 E-value=50 Score=34.82 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=60.1
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGH 156 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 156 (605)
+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 566777776665443 3445677777777777777777777766543 45556566666666555444444
Q ss_pred HHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhc
Q 007396 157 VFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQM 192 (605)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 192 (605)
..+.|.. |....+|...|+++++.+++.+-
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 5544422 23334456677777777776554
No 345
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.77 E-value=1.4e+02 Score=30.01 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=50.1
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-HcCChhHHHHHHHHHHh
Q 007396 401 NDVVWRSL---LSASKVHHNLEIGEIAAKNLFQINSH-HPSDYVLLSNMYA-RAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 401 ~~~~~~~l---l~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 464 (605)
|...|.++ +..+.+.|-+..|.+..+-+..++|. ||-.....++.|+ +++.++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455555 34678889999999999999999998 8887778888875 67788878887776654
No 346
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.49 E-value=1.1e+02 Score=28.47 Aligned_cols=25 Identities=4% Similarity=-0.056 Sum_probs=12.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 007396 134 FPALFKACAKLQALKEGMQIHGHVF 158 (605)
Q Consensus 134 ~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (605)
|.-...+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3344445555556666655444443
No 347
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.13 E-value=4.4 Score=39.19 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 383 AGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
.|.+++|.+.|... +..|... .|.--.+++.+.++...|++-+....+++|+....|-.-..+....|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555544 3333322 344444455566666666666666666666665556555555666666666666666
Q ss_pred HHHhCCCCC
Q 007396 461 EMASKGLNQ 469 (605)
Q Consensus 461 ~m~~~~~~~ 469 (605)
...+.++..
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 666666544
No 348
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=65.55 E-value=1.5e+02 Score=29.45 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=69.2
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhc-----CCchHHHHhHHHhHHHhcCCHHHHHHHHhcc-------CCCCee----
Q 007396 237 VSVLSACTHLGALDLGKCTHGSLIRNI-----SALNVIVETSLIDMYVKCGCLEKGLCLFRMM-------ADKCQL---- 300 (605)
Q Consensus 237 ~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m-------~~~~~~---- 300 (605)
.++..+....+.++++.+.|+...+.. .-....++-+|...|.+..|+++|.-+..+. .-.|..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345555666666777776666655432 1223466777778888888777765443322 222221
Q ss_pred --eHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 301 --TYSVMISGLAMHGQGKEALSIFSEMLR----EGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 301 --~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
+.-.|.-++...|...+|.+.-++..+ .|-+|-. .....+...|-..|+.|.|+.-|++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122344566777777777776666533 3322221 223344455667777777766666544
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.14 E-value=56 Score=33.39 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=23.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 345 SHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 345 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
.+.|+++.+.+.+....+ -+.....+..+++.-..+.|++++|...-+.|
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 344555555554444431 22233344445555555555555555554444
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.13 E-value=13 Score=24.17 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 440 VLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999888644
No 351
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=63.48 E-value=1.4e+02 Score=28.62 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=15.0
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 007396 444 NMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~ 463 (605)
..+.+.++|++|.+.++...
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34557899999999987543
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.91 E-value=58 Score=30.90 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=52.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHC--CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc--
Q 007396 103 IRGFVKEVEFEEALFLYNEMFER--GVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGK-- 178 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 178 (605)
|.+++..+++.+++...-+--+. .++|. ....-|-.|++.+.+..+.++-...+...-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67888888888877655443322 13333 3444455677888888877777766655333344446666666654
Q ss_pred ---CCCHHHHHHHH
Q 007396 179 ---CEKVEFASAIF 189 (605)
Q Consensus 179 ---~g~~~~A~~~~ 189 (605)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 47777777776
No 353
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.01 E-value=34 Score=26.36 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...+++..+.+|.|...-..+...+...|++++|.+.+-.+.+++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344566667778888888888888888888888888887777654
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.79 E-value=45 Score=29.43 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC----hhHHHHHHHHH
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR----WYDVAKIRTEM 462 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 462 (605)
+++|+.-|++++.++|+...++..++++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5667788888899999999999999999986654 33444444444
No 355
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.29 E-value=64 Score=24.58 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHH
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 216 (605)
+.++++.+++.|+- +......+-..-...|+.+.|+++++.++ +....|...++++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 44566666666643 22333333322235577888888888888 7777788888887777765544
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.50 E-value=2.2e+02 Score=29.74 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=75.0
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCC--CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMAD--KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG 348 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 348 (605)
.-++++.++..-..+-.+.+-.+|.. .+-..|-.+++.|..+ ..++-..+|+++.+..+ |.+.+..-+.-+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHh
Confidence 33444444444444444444444432 2233455556666655 44555666666665322 3333333333333345
Q ss_pred CHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCh
Q 007396 349 LVNEGLLCFDRMKLEYRIVPT------VQHYGCVVDLMGRAGMLGEALELIQSM----PIQQNDVVWRSLLSASKVHHNL 418 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~ 418 (605)
+.+.+..+|..+.. .+.|. .+.|.-++...+ .+.+..+.+..++ +...-.+.+.-+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 66666666665552 22331 234444443222 2344444444433 2222233344444455666666
Q ss_pred HHHHHHHHHHHhhCCCCCch
Q 007396 419 EIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 419 ~~a~~~~~~~~~~~~~~~~~ 438 (605)
++|++++..+++.+..|..+
T Consensus 222 ~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 222 TEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred HHHHHHHHHHhhhcchhhhH
Confidence 66766666666665444433
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.04 E-value=1.8e+02 Score=29.76 Aligned_cols=210 Identities=15% Similarity=0.040 Sum_probs=105.5
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHcCCCHHHHHHHHHhcCCCChh--HHHHHHHHHHHCCChhHH
Q 007396 141 CAKLQALKEGMQIHGHVFKVGFECDLFV--QNSLINMYGKCEKVEFASAIFKQMDQKSVA--SWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A 216 (605)
.+..|+.+-+ +.+++.|..++... ..+.+...++.|+.+-+.-+++.=..++.. ...+.+...+..|+.+.+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 3455776544 44556777666433 344556667888888777666543333221 112334556677887766
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHH--HhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 217 LKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIV--ETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 217 ~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
..+++.-.... -..+.... +.+..++..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+.-+++.-
T Consensus 85 ~~Ll~~~~~~~-~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 85 EELLDLGKFAD-DVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHHHHcCCccc-ccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 55554321100 00111111 2333344455554 4555566666554322 234455566778887777777654
Q ss_pred CCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 007396 295 ADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVY---VGVLSACSHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 295 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
... |..-++.+..+ +..|+. ++.+.+.+.|..|+...- .+++......|..+-+.-++ +.|..+
T Consensus 159 ~~~~~~d~~g~TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll-----~~gad~ 228 (413)
T PHA02875 159 ACLDIEDCCGCTPLIIA-MAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI-----KRGADC 228 (413)
T ss_pred CCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH-----HCCcCc
Confidence 322 33334444433 344554 345556667777665321 23444334556655443333 346555
Q ss_pred Ch
Q 007396 369 TV 370 (605)
Q Consensus 369 ~~ 370 (605)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 53
No 358
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.41 E-value=23 Score=36.13 Aligned_cols=84 Identities=8% Similarity=0.001 Sum_probs=55.6
Q ss_pred HHhcCCHHHHHHHHHHC-CCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 380 MGRAGMLGEALELIQSM-PIQQNDVVWRSLL-SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
+.+.+.++.|..++.+. ...||-+.|-+.= .++.+.+++..|..-+.++.+.+|.....|+.-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455666666666555 5566555433332 566777777777777777777777777777777777777777777777
Q ss_pred HHHHHH
Q 007396 458 IRTEMA 463 (605)
Q Consensus 458 ~~~~m~ 463 (605)
.|+.-.
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 766544
No 359
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.24 E-value=15 Score=30.46 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=26.5
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 007396 108 KEVEFEEALFLYNEMFERGVEPDNFTFPALFKAC 141 (605)
Q Consensus 108 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 141 (605)
..|.-.+|-.+|+.|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446677899999999999998886 88888765
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=57.08 E-value=55 Score=28.89 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
+++|...|+++...+|.+. .|..-+.+. +.|-+++.++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 5677788888888999754 555444443 45777888777766543
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.07 E-value=34 Score=25.48 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=18.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALE 391 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 391 (605)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444432211111 1234444444444444444443
No 362
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=56.88 E-value=2.2e+02 Score=28.60 Aligned_cols=102 Identities=14% Similarity=0.228 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhhCCCCC------
Q 007396 375 CVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSL------------LSASKVHHNLEIGEIAAKNLFQINSHHP------ 436 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~------ 436 (605)
.|...+-..|++++|..++.+.++ .||+++ ++.|...+|+-.|.-+-+++...-.+++
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 455667788999999999998853 344433 3467888899999888888765533322
Q ss_pred -chHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECC
Q 007396 437 -SDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVAR 480 (605)
Q Consensus 437 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 480 (605)
..|..++......+.+-++-+.++..-+.|-.+....-|+.+-.
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 35788999988999999999999999887766554445665443
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.66 E-value=85 Score=25.82 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 317 EALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
+..+-+..+....+.|+.......|.+|-+.+|+..|.++|+.++.+ ..+....|..++ ++...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHh
Confidence 45555666666778999999999999999999999999999988753 334444566554 3445556666
Q ss_pred CC
Q 007396 397 PI 398 (605)
Q Consensus 397 ~~ 398 (605)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.66 E-value=1e+02 Score=29.30 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCC-CCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh--
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEK-CWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK-- 280 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g-~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-- 280 (605)
|.+++..++|.+++...-+-.+.. +++|. ..-.-|-.|++.+....+.++-+...+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 667777777777766554443321 02222 2223333345555555555554444433222233335555554433
Q ss_pred ---cCCHHHHHHHH
Q 007396 281 ---CGCLEKGLCLF 291 (605)
Q Consensus 281 ---~g~~~~A~~~f 291 (605)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 34444444443
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.64 E-value=36 Score=25.35 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=34.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHH
Q 007396 311 MHGQGKEALSIFSEMLREGLEPDD--VVYVGVLSACSHAGLVNEGLLCF 357 (605)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 357 (605)
...+.++|+..|+...+.-..|.. .++..++.+++..|.+++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888775444333 47778888999888888877653
No 366
>PRK12798 chemotaxis protein; Reviewed
Probab=56.52 E-value=2.3e+02 Score=28.79 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=112.4
Q ss_pred cCCHHHHHHHHhccCCC----CeeeHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHH
Q 007396 281 CGCLEKGLCLFRMMADK----CQLTYSVMISG-LAMHGQGKEALSIFSEMLREGLEPDD----VVYVGVLSACSHAGLVN 351 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~~~----~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 351 (605)
.|+..+|.+.+..+... ....|-+|+.+ .....+..+|+++|+...- ..|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57888888888877633 23456666655 4455678899999988765 34543 23444444567889999
Q ss_pred HHHHHHHHhHHhcCCCCChHH-HHHHHHHHHh---cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007396 352 EGLLCFDRMKLEYRIVPTVQH-YGCVVDLMGR---AGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 352 ~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 427 (605)
++..+-......+.-.|-... +..++..+.+ ....+.-..++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988877776666655554322 2233333333 334555666677774222345888888888999999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHHH-----cCChhHHHHHHHHHH
Q 007396 428 LFQINSHHPSDYVLLSNMYAR-----AQRWYDVAKIRTEMA 463 (605)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~ 463 (605)
.+.+... ...-...+..|.. ..+.+++.+.+..+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9988633 2233334444432 234556655554443
No 367
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.32 E-value=66 Score=28.92 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=14.1
Q ss_pred HHHHCCChhHHHHHHHHHHhC
Q 007396 206 AHASNGLWSECLKLFGEMNNE 226 (605)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~ 226 (605)
-+.++|++++|..-|.+.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh
Confidence 355677777777777776664
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.24 E-value=65 Score=29.42 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=48.8
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH-hcCCCCChHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKL-EYRIVPTVQHYGCVVD 378 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~p~~~~~~~li~ 378 (605)
|.+..++.+.+.+...+++...++-++. +|. ..+-..++..++-.|++++|..-++-..+ .....+....|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4556677888888888888888877764 443 34455567778888999888876665541 0112223445555553
No 369
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.74 E-value=1.9e+02 Score=27.42 Aligned_cols=268 Identities=12% Similarity=0.069 Sum_probs=159.3
Q ss_pred hCCCCchhhccccccccCcc--CCCChHHHHHHHhhcCC--CCcc-----cHHHHHHHHHhCCCchHHHHHHHHHHHC--
Q 007396 57 WGFFWNPFCASNLVATCALS--HWGSMDYACSIFRQIDE--PGAF-----DFNTLIRGFVKEVEFEEALFLYNEMFER-- 125 (605)
Q Consensus 57 ~g~~~~~~~~~~ll~~~~~y--~~g~~~~A~~~f~~~~~--~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~-- 125 (605)
++-+||+..-|.-- +.- +...+++|+.-|++..+ +.-. +.-.+|..+.+.+++++.++.|.+|+..
T Consensus 20 s~sEpdVDlENQYY---nsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk 96 (440)
T KOG1464|consen 20 SNSEPDVDLENQYY---NSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK 96 (440)
T ss_pred cCCCCCcchHhhhh---ccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 44567777766555 333 66789999999988754 2222 2345788899999999999999998642
Q ss_pred -CC--CCCcchHHHHHHHHHccCChHHHHHHHHHHHHh-CCCCch----hHHHHHHHHHHcCCCHHHHHHHHHhcCC---
Q 007396 126 -GV--EPDNFTFPALFKACAKLQALKEGMQIHGHVFKV-GFECDL----FVQNSLINMYGKCEKVEFASAIFKQMDQ--- 194 (605)
Q Consensus 126 -g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 194 (605)
.+ .-+..+.++++.-.+...+.+.-..+++.-++. .-..+. .+-+.|...|...|++..-.+++.++.+
T Consensus 97 SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq 176 (440)
T KOG1464|consen 97 SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ 176 (440)
T ss_pred HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc
Confidence 11 124456788888777777777666666654432 000111 2334566778888888888888877652
Q ss_pred -----CC-------hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHh-----ccCChhhHHH-HH
Q 007396 195 -----KS-------VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACT-----HLGALDLGKC-TH 256 (605)
Q Consensus 195 -----~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~-----~~~~~~~a~~-~~ 256 (605)
.| ...|..-|..|....+-.+-..+|++........|.+. .-.++.-|. +.|.++.|.. +|
T Consensus 177 ~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 177 TEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred cccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHH
Confidence 11 23677788889888888888888888765442334433 345566664 3456665543 33
Q ss_pred HHHH---HhcCCch--HHHHhHHHhHHHhcCCHHHHHHHHhccC------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 257 GSLI---RNISALN--VIVETSLIDMYVKCGCLEKGLCLFRMMA------DKCQLTYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 257 ~~~~---~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
+... +.|.+.. ---|-.|.+++.+.|- .-|+.-. .|.+...+.|+.+|.. ++..+-..++..-
T Consensus 256 EAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 256 EAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 3333 3342221 2235566677766651 1122111 1234567788888865 4454444444432
Q ss_pred HHcCCCCCHH
Q 007396 326 LREGLEPDDV 335 (605)
Q Consensus 326 ~~~g~~p~~~ 335 (605)
.. .+..|.+
T Consensus 330 ~~-~IM~DpF 338 (440)
T KOG1464|consen 330 RS-NIMDDPF 338 (440)
T ss_pred hc-cccccHH
Confidence 22 3444443
No 370
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.20 E-value=63 Score=32.96 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 396 MPIQQNDV--VWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 396 m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
..++|... ++++-++.+.+++|+..|-.+.+++++++|..
T Consensus 292 c~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 292 CKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp S---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 35666443 67777888899999999999999999998863
No 371
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.97 E-value=93 Score=32.68 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=18.8
Q ss_pred HHHhHHHhcCCHHHHHHHHhccC
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
.++.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46678888888888888888885
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.68 E-value=2.5e+02 Score=28.54 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHH
Q 007396 309 LAMHGQGKEALSIFSEMLREGLEPDDV--VYVGVLSACS--HAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 362 (605)
+.+.+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677888888888888876 555444 3333444443 45677788888877663
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.63 E-value=50 Score=29.67 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 399 QQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 399 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
.|+..++..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 374
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.59 E-value=1.6e+02 Score=26.43 Aligned_cols=89 Identities=7% Similarity=0.002 Sum_probs=56.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYG-----CVVDLMGRAGMLGEALELIQSMPIQQN--DVVWRSLLSASK 413 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~a~~ 413 (605)
...+...+++++|...++.... .|....+. .|.......|.+++|+..++... .++ ......-...+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 3456778888888888776652 13223333 34456677888888888887762 111 111222234677
Q ss_pred hcCChHHHHHHHHHHHhhCCC
Q 007396 414 VHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~ 434 (605)
..|+.++|+..+++.++.+++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 888888888888888887643
No 375
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.42 E-value=1.8e+02 Score=27.03 Aligned_cols=136 Identities=9% Similarity=0.099 Sum_probs=71.3
Q ss_pred HHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNE 352 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 352 (605)
.-+..|++.-++.-|...++++.+|=. +- +.|--|.+..+.+---.+.+-....++.-+..-+..++ +...|++.+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQ-SR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQ-SR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHH-hh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 345667777777777666666655410 11 11122333333333333444444456665555555444 456788888
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
|...++.-...+|... +..+|+-.. .|.+.....++..|.. +++++|.+.+.++.+++
T Consensus 211 alNnLQst~~g~g~Vn--------------------~enVfKv~d-~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVN--------------------QENVFKVCD-EPHPLLVKKMLQACLK-RNIDEALKILAELWKLG 268 (333)
T ss_pred HHHHHHHHhccccccc--------------------hhhhhhccC-CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcC
Confidence 8888877664443321 122232222 4555555555555433 45666666666666665
Q ss_pred CC
Q 007396 433 SH 434 (605)
Q Consensus 433 ~~ 434 (605)
-+
T Consensus 269 ys 270 (333)
T KOG0991|consen 269 YS 270 (333)
T ss_pred CC
Confidence 43
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.37 E-value=31 Score=22.40 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=13.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 007396 305 MISGLAMHGQGKEALSIFSEMLRE 328 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~ 328 (605)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555566666555555543
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.37 E-value=26 Score=20.02 Aligned_cols=29 Identities=3% Similarity=0.007 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 416 HNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
|+.+.+..+++++....|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877776666655443
No 378
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.65 E-value=1.7e+02 Score=26.15 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcC--------------CchHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 238 SVLSACTHLGALDLGKCTHGSLIRNIS--------------ALNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 238 ~ll~a~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
+++..|.+.-++.+++.+++.+-+..+ .+.-.+-|.-...+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 456666677777777777777665422 23345556667777777777777777764
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.31 E-value=1.2e+02 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.388 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 181 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
+++++++.+.+- .-|..++.-|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~~-----~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEH-----GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHc-----CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344555544332 2488899999999999999999998876
No 380
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.90 E-value=1.5e+02 Score=25.22 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC---------CCChhHHHHHHHHHHHCCC-hhHHHHHHHHHHhCCCCCCChhHHHH
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMD---------QKSVASWSAIIAAHASNGL-WSECLKLFGEMNNEKCWRPEESILVS 238 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~p~~~t~~~ 238 (605)
.|.+++-.+..+.+.....+++.+. ..+-.+|++++.+..+..- ---+..+|.-|++.+ .+++..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~-~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND-IEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 4445544444555555555544442 2345678888888866655 345778889998877 8999999999
Q ss_pred HHHHHhccCC
Q 007396 239 VLSACTHLGA 248 (605)
Q Consensus 239 ll~a~~~~~~ 248 (605)
++.+|.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 9999876533
No 381
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=51.18 E-value=1e+02 Score=28.29 Aligned_cols=60 Identities=5% Similarity=-0.012 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCh-------HHHHHHHHHHHhhCC--C----CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 407 SLLSASKVHHNL-------EIGEIAAKNLFQINS--H----HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 407 ~ll~a~~~~g~~-------~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
-+.-.|+..|+. ..|...|++..+.+. . .......++.++.+.|+.++|.+.|.++...+
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 333445666664 345555555554432 1 23456678888999999999999999998654
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.12 E-value=2.4e+02 Score=27.24 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
.+.....|..+|.+.+|.++-++.+.-. +.+...+-.++..++..|+--.+..-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445567778888888888888877654 556666777777777777755555444443
No 383
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.88 E-value=51 Score=30.51 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+.+..+++.+..--.+.+++.|+.......|.........+++|.+.+.+.
T Consensus 54 hlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 54 HLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 334444444444444444554444444444444444444455555444444
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.80 E-value=6.3e+02 Score=32.13 Aligned_cols=355 Identities=9% Similarity=-0.044 Sum_probs=177.2
Q ss_pred Ccc-CCCChHHHHHHHhhc----CCCC-ccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 007396 74 ALS-HWGSMDYACSIFRQI----DEPG-AFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA 146 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~----~~~~-~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 146 (605)
.+- +|+.+..|.-.|++- .+.+ ... |-.+...|+.-++++....+...-. .+...+.- |-.....|+
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~~g~ 1464 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEASGN 1464 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHhhcc
Confidence 344 899999999999883 2221 122 3344448888899988877776411 12223333 334556799
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHH-HHHHHHCCChhHHHHHHHH
Q 007396 147 LKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK---SVASWSAI-IAAHASNGLWSECLKLFGE 222 (605)
Q Consensus 147 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 222 (605)
+..|...|+.+.+.+.+ ....++.+++.--..|.++.+....+..... ....|+++ +.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999999877532 3566666666656667788777777666532 22234433 233356677776665544
Q ss_pred HHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHH--------HhcCC-chHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 223 MNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLI--------RNISA-LNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 223 m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~--------~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
..++ -.........++-+.-+...+.. ....+.+. ..+.. .-...|..++....-+.-......++..
T Consensus 1543 -~~n~-e~w~~~~~g~~ll~~~~kD~~~~-~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1543 -DRNI-EYWSVESIGKLLLRNKKKDEIAT-LDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKV 1619 (2382)
T ss_pred -cccc-cchhHHHHHHHHHhhcccchhhH-HHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111 00011101111111111111111 01111111 11111 2234455555554443322222222221
Q ss_pred cCCCC----eeeHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 007396 294 MADKC----QLTYSVMISGLAMHGQGKEALSIFSEM-LREGLEPD-----DVVYVGVLSACSHAGLVNEGLLCFDRMKLE 363 (605)
Q Consensus 294 m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 363 (605)
-...+ ..-|..-+.--....+..+-+--+++. ......|+ ..+|......+-..|.++.|....-...+
T Consensus 1620 s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e- 1698 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE- 1698 (2382)
T ss_pred CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh-
Confidence 11111 123433332211112222222222222 22112222 24677777777889999999877665552
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----------CCCCCHHHHHHHHHH--------H-Hh--cCChHHHH
Q 007396 364 YRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----------PIQQNDVVWRSLLSA--------S-KV--HHNLEIGE 422 (605)
Q Consensus 364 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~p~~~~~~~ll~a--------~-~~--~g~~~~a~ 422 (605)
.+ . +..+--....+-..|+-..|+.++++. +.++.+..-+.++.. | .. +-..+.-+
T Consensus 1699 ~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~il 1775 (2382)
T KOG0890|consen 1699 SR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDIL 1775 (2382)
T ss_pred cc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 22 3 344556677788889999998888765 111112222222222 2 12 22345566
Q ss_pred HHHHHHHhhCCCCCchHHHHH
Q 007396 423 IAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+.+..+.+..|.....|..++
T Consensus 1776 k~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1776 KYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHHcccccCceeeHH
Confidence 778888888886555444444
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.73 E-value=2.2e+02 Score=26.90 Aligned_cols=207 Identities=16% Similarity=0.239 Sum_probs=107.2
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhC---CCC--CCChhHHHHHHHHHhccCChhhHHHHHHHHHHh----c-CCchHHH
Q 007396 201 SAIIAAHASNGLWSECLKLFGEMNNE---KCW--RPEESILVSVLSACTHLGALDLGKCTHGSLIRN----I-SALNVIV 270 (605)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~--~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 270 (605)
-.+|..+.+.|++++.+..|.+|..- . + .-+....++++.-.+...+.+.-..+++.-.+. . -..--.+
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSA-VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34555556666666666666555321 0 1 123344555555555444444444444332211 0 0111122
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCCC--------C-------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMADK--------C-------QLTYSVMISGLAMHGQGKEALSIFSEMLREG-LEPDD 334 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~~--------~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 334 (605)
-+-|...|...|.+.+-.+++.++.+. | ...|..-|+.|....+-..--.++++...-. .-|..
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345666677777777766666655311 1 1356667788887777777777777765422 23433
Q ss_pred HHHHHHHHHHh-----ccCCHHHHHH-HHHHhHHhcCCC--CC---hHHHHHHHHHHHhcCCHHHHHHHHHH--C-CCC-
Q 007396 335 VVYVGVLSACS-----HAGLVNEGLL-CFDRMKLEYRIV--PT---VQHYGCVVDLMGRAGMLGEALELIQS--M-PIQ- 399 (605)
Q Consensus 335 ~t~~~ll~a~~-----~~g~~~~a~~-~~~~~~~~~~~~--p~---~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~- 399 (605)
. ...++.-|. +.|.+++|-. +|+... .+.-. |- .--|-.|..++.+.|- .-|+. . |.+
T Consensus 228 l-ImGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKN 300 (440)
T KOG1464|consen 228 L-IMGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKN 300 (440)
T ss_pred H-HHhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCC
Confidence 3 334555554 4577777754 444443 33322 22 2346666777777662 11111 1 333
Q ss_pred -CCHHHHHHHHHHHHhc
Q 007396 400 -QNDVVWRSLLSASKVH 415 (605)
Q Consensus 400 -p~~~~~~~ll~a~~~~ 415 (605)
|.......|+.+|..+
T Consensus 301 dPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN 317 (440)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 5556788888888654
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.14 E-value=3.9e+02 Score=29.46 Aligned_cols=94 Identities=9% Similarity=-0.070 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC---CCCCchHHHHHHHHHHcCChh
Q 007396 377 VDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN---SHHPSDYVLLSNMYARAQRWY 453 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 453 (605)
+..+...|...+|...+..+-...+......+...-...|..+.+..........+ -.-|..|...+..+++.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44566778888888888776223455555555555677888888877766543321 112345666777777666666
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007396 454 DVAKIRTEMASKGLNQS 470 (605)
Q Consensus 454 ~a~~~~~~m~~~~~~~~ 470 (605)
.+.-.---..|.+..|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 65532222236666554
No 387
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.77 E-value=1.3e+02 Score=28.06 Aligned_cols=57 Identities=4% Similarity=-0.126 Sum_probs=48.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.++...|++-++++.-..++...|.|..+|..-+.+.+..=+.++|..=|....+.+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 445677899999999999999999999999999888888888888888888777644
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.24 E-value=1.3e+02 Score=24.02 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
.++|..|.+.+...+. ....+--.-+..+...|++++|...=.....||...|-++-. .+.|..+++...+.++..
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 3444445444444432 222222233334445555555533333334445555544332 244555555555544443
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.78 E-value=45 Score=25.38 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHH
Q 007396 47 FKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEAL 116 (605)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 116 (605)
..+++..+++.|+-.. ...+.+- ..- ..|+.+.|+++++.++ +....|...++++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~ilT~-~d~e~I~---aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTE-EDRNRIE---AATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHH---HhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3567777777775432 2233333 333 5577888888888887 77777788888877777655443
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.14 E-value=4.7e+02 Score=29.51 Aligned_cols=215 Identities=13% Similarity=0.001 Sum_probs=109.9
Q ss_pred hccCChhhHHHHHHHHHHhcCCchHH-------HHhHHHh-HHHhcCCHHHHHHHHhccC--------CCCeeeHHHHHH
Q 007396 244 THLGALDLGKCTHGSLIRNISALNVI-------VETSLID-MYVKCGCLEKGLCLFRMMA--------DKCQLTYSVMIS 307 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~ 307 (605)
....++.+|..+.+++...-..|+.. .+++|-. .....|+++.|.++-+... ...++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566777777777766443232211 2222221 2234677888877766443 224567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHH--HHHhccCCH--HHHHHHHHHhHHhcCCC-----CChHHHHH
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDDVVY---VGVL--SACSHAGLV--NEGLLCFDRMKLEYRIV-----PTVQHYGC 375 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll--~a~~~~g~~--~~a~~~~~~~~~~~~~~-----p~~~~~~~ 375 (605)
+..-.|++++|..+.++..+.--+-|...| ..+. ..+...|.. .+....|.......... +-...+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999998887776553222233322 2221 224455632 23333343333221111 11233444
Q ss_pred HHHHHHhcCCHHHHHHHHHH----C-CCCCCHH-H---HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchHH---H
Q 007396 376 VVDLMGRAGMLGEALELIQS----M-PIQQNDV-V---WRSLLSASKVHHNLEIGEIAAKNLFQINSHH--PSDYV---L 441 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~----m-~~~p~~~-~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~---~ 441 (605)
+...+.+ ++.+..-... . ...|... . +..|.......|+.+.|.....++..+.... ...|. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333332222 1 1122222 2 2255667788999999999999888764332 22221 1
Q ss_pred HH--HHHHHcCChhHHHHHHHH
Q 007396 442 LS--NMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 442 l~--~~~~~~g~~~~a~~~~~~ 461 (605)
++ ..-...|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 222456888877766644
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.06 E-value=4.4e+02 Score=29.20 Aligned_cols=127 Identities=15% Similarity=0.085 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc
Q 007396 166 LFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH 245 (605)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~ 245 (605)
..++...|+.+.-.|++++|-...-.|-..+..-|.-.+.-+...++......++ .... -+.+...|-.+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~-~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGP-PRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCC-cccCchHHHHHHHHHHH
Confidence 4567777788888888888888877777777777777777776666654433221 1111 11233445555544443
Q ss_pred cCChhhH--------------HHHHH----HHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe
Q 007396 246 LGALDLG--------------KCTHG----SLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ 299 (605)
Q Consensus 246 ~~~~~~a--------------~~~~~----~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~ 299 (605)
.+...- ..+.+ +..+. ..+..+-..|+..|...+++.+|.+.+-....+++
T Consensus 468 -~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 468 -SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 111110 00000 11111 11233445589999999999999999988876654
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.66 E-value=85 Score=28.16 Aligned_cols=51 Identities=12% Similarity=-0.071 Sum_probs=33.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
...+.+......+.+.+-....|++.+|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555444455677777777777777777777777777766
No 393
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.27 E-value=27 Score=38.35 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=50.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~ 419 (605)
+|.-+.+.|-.+-|+.+.+.=...+ .+...+|+++.|++.-+++. |..+|..|.......|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 4444556666666666554333222 23446788888888877774 5678888888888888888
Q ss_pred HHHHHHHHHHhhC
Q 007396 420 IGEIAAKNLFQIN 432 (605)
Q Consensus 420 ~a~~~~~~~~~~~ 432 (605)
.|+..+++....+
T Consensus 690 IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFE 702 (1202)
T ss_pred HHHHHHHHhhhhh
Confidence 8888887766543
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.06 E-value=1.5e+02 Score=24.44 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 420 IGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 420 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
.+..+|+.|...+ ...+..|...+..+...|++.+|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888999888754 45677889999999999999999999875
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.93 E-value=84 Score=20.75 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=21.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
.+.|-..++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666677777777776666666655553
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.24 E-value=1.2e+02 Score=24.30 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=21.3
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887766
No 397
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.02 E-value=2.1e+02 Score=27.89 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHH
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDD---VVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
+-.+.|+..+|.+.|+.+.+. .|=. ..-..|+.+|....-+.+...++.
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777766553 2211 122345555555544444444443
No 398
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=3.2e+02 Score=26.84 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=12.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
......-|++.|+.+.|.+.+...
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333444555556655555555443
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.65 E-value=1.3e+02 Score=25.51 Aligned_cols=64 Identities=8% Similarity=-0.062 Sum_probs=44.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 386 LGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 386 ~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
-+.|.++.+-|+ ...............|++..|.++.+.+...+|+|...-...+++|...|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 356777777774 2333344455567789999999999999999999988888888887766543
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.61 E-value=1.2e+02 Score=32.07 Aligned_cols=133 Identities=17% Similarity=0.065 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHC-CCCCC--HHH
Q 007396 331 EPDDVVYVGVLSACSHA--GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR-AGMLGEALELIQSM-PIQQN--DVV 404 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p~--~~~ 404 (605)
.|+..|...++.-.... ...+-|-.+|..|.. .+.|--...| +..+|-| .|+...|...+... ..+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 45665555554433321 223444455555542 2223211111 1122322 45666666655544 22221 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|.....+.|-...|-.++.+.+.+....|-++..++++|....+.+.|.+.|+...++.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 33344444445555556666666666665566666667777777777777776666665543
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.32 E-value=63 Score=21.36 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=13.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLI 173 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (605)
|-+.++...++.|.+.|+.-+...+..++
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 44444444444444444444444444433
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.15 E-value=45 Score=32.05 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=31.5
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL 341 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (605)
-||..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36677888888888888888888888888776666665444
No 403
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.97 E-value=1.8e+02 Score=30.01 Aligned_cols=278 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 182 VEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 182 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
++.-.+++..-+..+.+-+...+.-.-.......--+.+.+..+.| ..++.--+..+.+++-.++++.+.+
T Consensus 12 ~~~r~evl~~w~t~~~vd~~eav~y~k~~p~~k~f~~~L~~a~~~g---------~~l~QPR~G~~~~~e~i~lL~~l~~ 82 (480)
T TIGR01503 12 HKIREEVLQQWPTGKDVDLQDAVDYHKSIPAHKNFAEKLELAKKKG---------KTMAQPRAGVALLDEHIELLRTLQE 82 (480)
T ss_pred HHHHHHHhhcCCccccCCHHHHHHHHHhCCccccHHHHHHHHHhcC---------CEeecCCCCCCcHHHHHHHHHHHHH
Q ss_pred hcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee-------------eHHHHHHHH-----HhcCCHHHHHHHHH
Q 007396 262 NISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL-------------TYSVMISGL-----AMHGQGKEALSIFS 323 (605)
Q Consensus 262 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-------------~~~~li~~~-----~~~g~~~~A~~~~~ 323 (605)
.| ...+...-|+.|.+.+++++|..-+++-.+.+.. ....++.+. .++|.. ++..+++
T Consensus 83 ~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtp-DarlL~e 158 (480)
T TIGR01503 83 EG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTP-DARLLAE 158 (480)
T ss_pred cc---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCC-cHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH------hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCC
Q 007396 324 EMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKL------EYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMP 397 (605)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (605)
-+...|+....--..+.---|++.=-++++...|+.+.+ +.|+..|.+++..|...+
T Consensus 159 ~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL----------------- 221 (480)
T TIGR01503 159 IILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL----------------- 221 (480)
T ss_pred HHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc-----------------
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccce--
Q 007396 398 IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSL-- 475 (605)
Q Consensus 398 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~-- 475 (605)
+.|....--++|.++.. .+.+-.+... .|..+|+..+=...+..+++..-..-+...|
T Consensus 222 vPPsisiav~ilE~Lla--------------~eqGVksisv------gy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~D 281 (480)
T TIGR01503 222 VPPSISNAIGIIEGLLA--------------AEQGVKNITV------GYGQVGNLTQDIAALRALEEQTNEYLKAYGYND 281 (480)
T ss_pred cChHHHHHHHHHHHHHH--------------HHcCCeEEEe------ccccCCChHHHHHHHHHHHHHHHHHHHhCCCCc
Q ss_pred EEECCEEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 007396 476 VEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQL 509 (605)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m 509 (605)
+.+...+|.++-|.-........+-.+.-....+
T Consensus 282 v~i~tV~hqwMG~FP~d~~~A~~lis~~a~~A~l 315 (480)
T TIGR01503 282 VFVTTVFHQWMGGFPEDESKAFGVISTATTIAAL 315 (480)
T ss_pred eEEEEEeeeccCCCCCChhhhhhHHHHHHHHHHH
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.45 E-value=91 Score=24.06 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=33.8
Q ss_pred HhcCChHHHHHHHHHHHhhCCC----C-----CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 413 KVHHNLEIGEIAAKNLFQINSH----H-----PSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.+.||+..|.+.+.+....... . ......++..+...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776666665544321 1 11234567778888999999999888764
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.14 E-value=43 Score=32.17 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILV 237 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~ 237 (605)
-||..|...++.||+++|+.++++.++.| +.--..||.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG-~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLG-STSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 36788899999999999999999999888 554444443
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.23 E-value=1.4e+02 Score=24.65 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 396 MPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 396 m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+.+-|+..+...-+.||++.+|+..|.++++-+...-+.
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 356788888889999999999999999999888765443
No 407
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.86 E-value=93 Score=32.82 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=72.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPT--VQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a 421 (605)
-.|+...|...+.... ...|- -.....|...+.+.|...+|-.++.+. .+ .....++..+..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3578888888887765 33332 123345666777778888888877654 32 23345788888999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
++.|+++.+++|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999988777766554
No 408
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.56 E-value=2.8e+02 Score=25.03 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH-----HHHHHHccCChHHHHHHHHHHHHhCCCCc--hhHHHH
Q 007396 99 FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA-----LFKACAKLQALKEGMQIHGHVFKVGFECD--LFVQNS 171 (605)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 171 (605)
|..++.... .+.+ +.....+.+...+ ...+|.. +...+...+++++|..-++..+...-+.+ ..+--.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 444554442 3333 5555555555432 1223332 23445667888888888877764421111 112223
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCChhH--HHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQKSVAS--WSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
|.......|.+|+|.++++....++-.+ ...-.+.+...|+-++|..-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4556667788888888888877665433 2333456888888888888888887764
No 409
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.25 E-value=2.7e+02 Score=30.56 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChh----------HHHHHHHHHhccCChhhHHHHHHHHHHh-c-CCc
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEES----------ILVSVLSACTHLGALDLGKCTHGSLIRN-I-SAL 266 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~ 266 (605)
+-..++-.|-...+++..+++.+.++. -||.. .|...++-=-+.|+-+.|..+.--+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~----iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR----IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh----CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 344455556667777777777777764 23321 2222333223345555555554444432 2 222
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV---VYVGVLSA 343 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a 343 (605)
++||-||++ |+.|- +-+.|-..+..+.|.+.|++.-+ +.|+.. -+..|+.+
T Consensus 279 ---------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 345555543 22221 11234445556677777777765 566553 34444443
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
-.+ .++...+ +. ..--.|-.+++|.|.++...++++-. ..+.+-.-..|+..|.+
T Consensus 333 aG~--~Fens~E----lq---------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLE----LQ---------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHH----HH---------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 1111111 11 01112344567777777766666432 22344455667777777
Q ss_pred HHHHHHhhCCC
Q 007396 424 AAKNLFQINSH 434 (605)
Q Consensus 424 ~~~~~~~~~~~ 434 (605)
+.+.|.++.|+
T Consensus 388 Aae~mfKLk~P 398 (1226)
T KOG4279|consen 388 AAEMMFKLKPP 398 (1226)
T ss_pred HHHHHhccCCc
Confidence 77777777764
No 410
>PRK10941 hypothetical protein; Provisional
Probab=39.66 E-value=2.4e+02 Score=27.04 Aligned_cols=65 Identities=6% Similarity=-0.042 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
+.+-..|.+.++++.|+.+.+.+ .+.|+ ..-|.--.-.|.+.|....|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556677888888888888777 44454 3356555566788888888888888888888877654
No 411
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.56 E-value=3.2e+02 Score=25.48 Aligned_cols=54 Identities=7% Similarity=0.174 Sum_probs=28.1
Q ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHH---HHH--HH-HhcCChHHHHHHHHHHHhhCCC
Q 007396 381 GRAGMLGEALELIQSM---PIQQNDVVWRS---LLS--AS-KVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~--a~-~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+..+++.+|.++|++. ....+..-|.. ++. .| .-..|.-.+...+++-.+++|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3455666666666665 12222222221 111 12 2235666677777888888886
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.10 E-value=3.6e+02 Score=25.91 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHhccCCHHHHHH
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPDDV-------VYVGVLSACSHAGLVNEGLL 355 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~ 355 (605)
+-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 34466778888888888888888777654 34455556666666544333
No 413
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=2.7e+02 Score=29.60 Aligned_cols=149 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCchhhccccccccCcc-CCCChHHHHHHHhhcC------------------------CCCcccHHHH---HHHHHhCC
Q 007396 59 FFWNPFCASNLVATCALS-HWGSMDYACSIFRQID------------------------EPGAFDFNTL---IRGFVKEV 110 (605)
Q Consensus 59 ~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~------------------------~~~~~~~~~l---i~~~~~~g 110 (605)
+..+++..+.|+-++.++ ..|+.+-|..+.++.. .-|..-|-+| |..+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHHHHHHHHH-ccCChHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHcCCC---HH
Q 007396 111 EFEEALFLYNEMFERGVEPDNFTFPALFKACA-KLQALKEGMQIHGHVFKVG---FECDLFVQNSLINMYGKCEK---VE 183 (605)
Q Consensus 111 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~---~~ 183 (605)
.+..|++.-+-+......-|+.....+|..|+ +.+++.-..++++...... .-|+-..-.+|...|.+... -.
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rq 436 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQ 436 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHH
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHH
Q 007396 184 FASAIFKQMDQKSVASWSAIIAAH 207 (605)
Q Consensus 184 ~A~~~~~~m~~~~~~~~~~li~~~ 207 (605)
.|+..+.+...--....+-|+..+
T Consensus 437 sa~~~l~qAl~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 437 SALNALLQALKHHPLVLSELLDEL 460 (665)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhc
No 414
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.94 E-value=3e+02 Score=29.80 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMY 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 278 (605)
.|..-+.-+...++.. ....+.....- .-.+.....-++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~-p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~ 448 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRV-PLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWF 448 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhC-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 3444444443333222 44444444432 2334556667777777777777777777665544322 23445556666
Q ss_pred HhcCCHHHHHHHHhcc
Q 007396 279 VKCGCLEKGLCLFRMM 294 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m 294 (605)
.++|+......+-+.+
T Consensus 449 ~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRL 464 (566)
T ss_dssp H---------------
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7777766655554433
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.38 E-value=42 Score=27.89 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=23.6
Q ss_pred HCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHH
Q 007396 209 SNGLWSECLKLFGEMNNEKCWRPEESILVSVLSAC 243 (605)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~ 243 (605)
..|.-.+|..+|++|++.| -+||. +..|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G-~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERG-NPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCC-CCCcc--HHHHHHHh
Confidence 4566788999999999999 77874 45555443
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.83 E-value=3.8e+02 Score=25.50 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=41.7
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVY--VGVLSA 343 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a 343 (605)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-.. ..|-..+...| ..++ -
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~----------------~~~~~~e~dlfi~RaVL-~ 150 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWS----------------TKGYPSEADLFIARAVL-Q 150 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHH----------------HHTSS--HHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHH----------------HhcCCcchhHHHHHHHH-H
Confidence 356777788889999999999988775543332222211221111 12222222222 2233 3
Q ss_pred HhccCCHHHHHHHHHHhHH
Q 007396 344 CSHAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~ 362 (605)
|...+++..|...++...+
T Consensus 151 yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 4456788888887776664
No 417
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.80 E-value=1.6e+02 Score=24.34 Aligned_cols=67 Identities=7% Similarity=0.144 Sum_probs=43.6
Q ss_pred HHHHHHHHC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 388 EALELIQSM-PIQQNDV---VWRSLLSASKVHHNLEIGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
++.+.|... ..+.|.. .|-..+..| +....+|+.|.+.+ ...+..|...+..+...|++.+|.++++
T Consensus 51 rc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 51 RCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444433 2344443 555555443 33567788887654 4456678888999999999999999885
No 418
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.43 E-value=3.6e+02 Score=25.87 Aligned_cols=132 Identities=15% Similarity=0.110 Sum_probs=75.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcch-------HHHHHHHHHccCChHHHHHHHHHHHHh----CCCCchhHHHH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFT-------FPALFKACAKLQALKEGMQIHGHVFKV----GFECDLFVQNS 171 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~ 171 (605)
.+-..+.+++++|+..|.+....|+..|..+ ...+...|...|+...-.+......+. .-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445677888999999999988887766544 445666677777665544443332221 11223445556
Q ss_pred HHHHHHcC-CCHHHHHHHHHhcCC----CC-----hhHHHHHHHHHHHCCChhHHHHHHHHH----HhCCCCCCChhH
Q 007396 172 LINMYGKC-EKVEFASAIFKQMDQ----KS-----VASWSAIIAAHASNGLWSECLKLFGEM----NNEKCWRPEESI 235 (605)
Q Consensus 172 li~~y~~~-g~~~~A~~~~~~m~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~p~~~t 235 (605)
||..+-.. ..++.-.++.....+ .+ ...=.-+|..+.+.|.+.+|+.+...+ ++-. -+|+..+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-DK~~Li~ 166 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-DKINLIT 166 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-Cccceee
Confidence 66655433 234554544444331 00 112235778888999999998766543 3333 3555444
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.24 E-value=2.4e+02 Score=30.40 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCCH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLRE--GLEPDDVVYVGVLSACSHAGLV 350 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~ 350 (605)
+++.+|..+|++..+.++++..... |-+-=...|+..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5566666666666666666665542 1111123455555555555543
No 420
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.16 E-value=7.4e+02 Score=28.69 Aligned_cols=252 Identities=12% Similarity=0.024 Sum_probs=134.2
Q ss_pred CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH-HHHHHHHHhcCCCChhHHHHHHHH
Q 007396 128 EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV-EFASAIFKQMDQKSVASWSAIIAA 206 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~~~~~~~~~li~~ 206 (605)
.+|...-...+..+.+.++.+ +...+..+++ .+|..+-...+.++.+.+.. .....+...+..+|...-...+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 456666666677777666544 3333334432 34555555555555544321 112222233344555555555555
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHH
Q 007396 207 HASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEK 286 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 286 (605)
+...+..+ . ..+-++.. .+|...-...+.++.+.+..+. + ...--+++..+-...+.++...+..+.
T Consensus 708 L~~~~~~~-~-~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~---l----~~~l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 708 LRALRAGD-A-ALFAAALG----DPDHRVRIEAVRALVSVDDVES---V----AGAATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHhhccCC-H-HHHHHHhc----CCCHHHHHHHHHHHhcccCcHH---H----HHHhcCCCHHHHHHHHHHHHHhccccc
Confidence 55443221 2 22333332 3455555556666666544322 1 122224566666677777777665432
Q ss_pred -HHHHH-hccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 007396 287 -GLCLF-RMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEY 364 (605)
Q Consensus 287 -A~~~f-~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 364 (605)
+...+ .-+..+|...-.+.+.++...|..+.+...+..+.+ .+|...=...+.++...+.. ++...+..+..
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhc--
Confidence 23333 334466766777778888888876655555555553 34555555567777777653 44455544443
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Q 007396 365 RIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVV 404 (605)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 404 (605)
.|+..+-...+.++++.+....+...+...-..+|..+
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 47777777778888876434456655555522444443
No 421
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.06 E-value=5.2e+02 Score=29.22 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhCCCCchhhc----cccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHH
Q 007396 47 FKKVHAHVLKWGFFWNPFCA----SNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNE 121 (605)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~----~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 121 (605)
++.+.+.+.+.|.+-=...+ ..-. .+. .||+++.|++.-..+.+ ...|..|.....++|+.+-|...|++
T Consensus 623 GqaiIaYLqKkgypeiAL~FVkD~~tRF---~LaLe~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~ 697 (1202)
T KOG0292|consen 623 GQAIIAYLQKKGYPEIALHFVKDERTRF---ELALECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQR 697 (1202)
T ss_pred cHHHHHHHHhcCCcceeeeeecCcchhe---eeehhcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 46788888888864211111 1223 555 89999999988877754 45799999999999999999999988
Q ss_pred HHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHH
Q 007396 122 MFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWS 201 (605)
Q Consensus 122 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 201 (605)
...- ..|--.|.-.|+.++-.++...+.... |. +-.-...+| .|++++-.++++.-...+..-.+
T Consensus 698 ~knf---------ekLsfLYliTgn~eKL~Km~~iae~r~---D~-~~~~qnalY--l~dv~ervkIl~n~g~~~laylt 762 (1202)
T KOG0292|consen 698 TKNF---------EKLSFLYLITGNLEKLSKMMKIAEIRN---DA-TGQFQNALY--LGDVKERVKILENGGQLPLAYLT 762 (1202)
T ss_pred hhhh---------hheeEEEEEeCCHHHHHHHHHHHHhhh---hh-HHHHHHHHH--hccHHHHHHHHHhcCcccHHHHH
Confidence 7642 222223455688887776655543331 22 222223334 68899999998887654432221
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhC
Q 007396 202 AIIAAHASNGLWSECLKLFGEMNNE 226 (605)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~ 226 (605)
-..+|.-++|.++.++...+
T Consensus 763 -----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 763 -----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred -----HhhcCcHHHHHHHHHhhccc
Confidence 23467778888888887664
No 422
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=35.98 E-value=30 Score=25.65 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHHHHCCcccCCcccc
Q 007396 493 PAWDNIYEMIHQMEWQLKFEGYSPDISQVL 522 (605)
Q Consensus 493 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 522 (605)
+...++++.+++...+++..|+.||...+-
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL~G 34 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVLVG 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEEE-
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 345678888888999999999999986653
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.46 E-value=62 Score=22.80 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
.+|.||.+.|++++|.++..++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467777777888888777777654
No 424
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.29 E-value=2.3e+02 Score=25.26 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHHhcCCCCCh-H-----HHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Q 007396 350 VNEGLLCFDRMKLEYRIVPTV-Q-----HYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLL 409 (605)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~p~~-~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 409 (605)
++.|..+|+.+.++...+-+. . .-...+-.|.+.|.+++|.+++++.--.|+.......+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 455666666666543211000 1 11223345666777777777777662244444433333
No 425
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.09 E-value=78 Score=30.42 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=25.5
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
.+.|+.+.|..+|+.++.+.|.++.....++......++.-+|.+++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 44555666666666666666665555555544444444444444444
No 426
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.77 E-value=4.9e+02 Score=26.20 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=31.2
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHH-hcCCHHHHHHHHHHC
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVP--TVQHYGCVVDLMG-RAGMLGEALELIQSM 396 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~m 396 (605)
+..+.+.|-+..|.++.+-+. .+.| |+.....+|+.|+ ++++++--.++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 345566777777777666665 3333 3444455566664 566666666666554
No 427
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.75 E-value=2.1e+02 Score=21.95 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHHHHHcCChh-HHHHHHHHH
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--HPSDYVLLSNMYARAQRWY-DVAKIRTEM 462 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 462 (605)
|....-.+...+...|+++.|.+.+-.+.+.++. +...-..|+.++.-.|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3446666677778888888888888887777654 4556677777777777643 444444444
No 428
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.45 E-value=6.5e+02 Score=27.52 Aligned_cols=149 Identities=11% Similarity=0.036 Sum_probs=79.9
Q ss_pred hccChHHHHHHHHHHHHhCCCCchh----hc-cccccccCcc-CCCChHHHHHHHhhcCC----CCcccHHHHH-----H
Q 007396 40 TCKNLEEFKKVHAHVLKWGFFWNPF----CA-SNLVATCALS-HWGSMDYACSIFRQIDE----PGAFDFNTLI-----R 104 (605)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~g~~~~~~----~~-~~ll~~~~~y-~~g~~~~A~~~f~~~~~----~~~~~~~~li-----~ 104 (605)
-...++.|+......+..--.++.. .. ..++ .+| +.+... |.+..++..+ .....|.... .
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~---~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~ 147 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLA---RIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQ 147 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH---HHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3345777777777654332222211 11 2233 777 665555 8888877543 1222333322 2
Q ss_pred HHHhCCCchHHHHHHHHHHHCC---CCCCcchHHHHHHHHH--ccCChHHHHHHHHHHHHhCC---------CCchhHHH
Q 007396 105 GFVKEVEFEEALFLYNEMFERG---VEPDNFTFPALFKACA--KLQALKEGMQIHGHVFKVGF---------ECDLFVQN 170 (605)
Q Consensus 105 ~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~ 170 (605)
.+...+++..|++.++.+...- ..|-...+..++.+.. +.+..+.+.+..+.+..... .|...++.
T Consensus 148 l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ 227 (608)
T PF10345_consen 148 LALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALF 227 (608)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHH
Confidence 2223378888999988876542 2333445555555554 33556667676666644322 23456666
Q ss_pred HHHHHHH--cCCCHHHHHHHHHhc
Q 007396 171 SLINMYG--KCEKVEFASAIFKQM 192 (605)
Q Consensus 171 ~li~~y~--~~g~~~~A~~~~~~m 192 (605)
.+++.++ ..|+++.+...++++
T Consensus 228 lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 228 LLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666544 567766666555443
No 429
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=2.1e+02 Score=28.07 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 377 VDLMGRAGMLGEALELIQSM----PIQQ--NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
.+-|.+..++..|...|.+- --.| +.+.|+.-..+-...|++..++.-..+++..+|.+...|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34577778888888888765 1123 34466666666677899999999999999999998888888778887777
Q ss_pred ChhHHHHHHHHH
Q 007396 451 RWYDVAKIRTEM 462 (605)
Q Consensus 451 ~~~~a~~~~~~m 462 (605)
++++|....+.-
T Consensus 168 ~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 168 RFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHhhh
Confidence 866666555443
No 430
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.08 E-value=5.7e+02 Score=26.73 Aligned_cols=213 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCC----------hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHh
Q 007396 183 EFASAIFKQMDQKS----------VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE--------ESILVSVLSACT 244 (605)
Q Consensus 183 ~~A~~~~~~m~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~--------~~t~~~ll~a~~ 244 (605)
|+|....++.++.| ......++..-.-.|++.+|++-..+|.+.-.-.|. ...-..+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCChhhHHHHHHHHHHhcCCchHHHH--hHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHH----------HHHhc
Q 007396 245 HLGALDLGKCTHGSLIRNISALNVIVE--TSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMIS----------GLAMH 312 (605)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~----------~~~~~ 312 (605)
..+.++.|+.-|....+.--..|...+ ..+.-.|.+.|+.++-.++.+.+..++..++..-.- -....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhc
Q 007396 313 GQGKEALSIFSEMLREG-----LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRA 383 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~ 383 (605)
+++.||...+++-.+.. .+...-....|-..+...|+..++.....-...-..-.|| ...-..+-+.|...
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred CC--HHHHHHHHHH
Q 007396 384 GM--LGEALELIQS 395 (605)
Q Consensus 384 g~--~~~A~~~~~~ 395 (605)
|. -++..+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
No 431
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.89 E-value=2.2e+02 Score=29.01 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 167 FVQNSLINMYGKCEKVEFASAIFKQMDQ-----------KSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
++...|++.++-.||+..|.++++.+.- -.+.++--+.-+|.-.+++.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888899988888877651 133456667777888888888888887764
No 432
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.85 E-value=1.9e+02 Score=25.43 Aligned_cols=35 Identities=0% Similarity=-0.171 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 147 LKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 147 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
.-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33445555555544444343333333444444443
No 433
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.59 E-value=5.5e+02 Score=26.40 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 007396 302 YSVMISGLAM---HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS 345 (605)
Q Consensus 302 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 345 (605)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..+..++.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4445555544 4788889999999998888877555444444443
No 434
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=33.44 E-value=3e+02 Score=23.41 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007396 335 VVYVGVLSACSHAGL-VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR 382 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 382 (605)
.+|..++.+.++..- ---+..+|+.+.+ .+.+++...|.+|+....+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Confidence 344444444443333 2233344444442 3444444444444444433
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.27 E-value=1.9e+02 Score=22.30 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=17.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
+.......|+.++|...+++.+++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445667788888888888877653
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.26 E-value=3.7e+02 Score=28.51 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=14.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcC
Q 007396 171 SLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45556666666666666666664
No 437
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.19 E-value=64 Score=22.72 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 182 VEFASAIFKQMDQ--KSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 182 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
++...++++.+.. .|-.-.-.+|.||.+.|++++|.++.+++..
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444432 2333444578888888888888888877654
No 438
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=32.81 E-value=38 Score=24.04 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=18.3
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChh
Q 007396 210 NGLWSECLKLFGEMNNEKCWRPEES 234 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~~p~~~ 234 (605)
.-+++.|+..|.++...|.++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4578888888988887765666543
No 439
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.37 E-value=6e+02 Score=26.50 Aligned_cols=20 Identities=20% Similarity=-0.071 Sum_probs=10.5
Q ss_pred hHHHhcCCHHHHHHHHhccC
Q 007396 276 DMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~ 295 (605)
...+..|+.+-+.-+++.-.
T Consensus 255 ~~A~~~~~~~iv~~Ll~~ga 274 (480)
T PHA03100 255 HYAVYNNNPEFVKYLLDLGA 274 (480)
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 33445566665555555433
No 440
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=31.63 E-value=1.3e+02 Score=18.49 Aligned_cols=28 Identities=7% Similarity=-0.113 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCChHHHHHHHH--HHHhhCC
Q 007396 406 RSLLSASKVHHNLEIGEIAAK--NLFQINS 433 (605)
Q Consensus 406 ~~ll~a~~~~g~~~~a~~~~~--~~~~~~~ 433 (605)
-.+.-.+-..|+.++|+.+++ -+..+++
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344445556666666666633 5555444
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.51 E-value=2.2e+02 Score=24.16 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=29.0
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 120 NEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
..+.+.|++++.. =..++..+...++.-.|.++|+.+.+.++..+..|--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3344445444333 123444444444445566666666655554444433334455555553
No 442
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.42 E-value=4.2e+02 Score=28.66 Aligned_cols=83 Identities=7% Similarity=0.043 Sum_probs=53.6
Q ss_pred hcCCHHHHHHHHHH-CCCCC-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChh
Q 007396 382 RAGMLGEALELIQS-MPIQQ-N------DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWY 453 (605)
Q Consensus 382 ~~g~~~~A~~~~~~-m~~~p-~------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (605)
+..++..+.++|+. |..-| | ....+.|--+|....+.+.|.++++++.+.+|.++.+-..+..+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 34556666666543 21111 1 1245566666777777888888888888887777766666777777777778
Q ss_pred HHHHHHHHHHh
Q 007396 454 DVAKIRTEMAS 464 (605)
Q Consensus 454 ~a~~~~~~m~~ 464 (605)
+|.........
T Consensus 446 ~AL~~~~~~~s 456 (872)
T KOG4814|consen 446 EALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHh
Confidence 77777766554
No 443
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.23 E-value=3.3e+02 Score=29.53 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=43.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHcCCCHH------HHHHHHHhcC-CCChhHHHHHHHH
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVG--FECDLFVQNSLINMYGKCEKVE------FASAIFKQMD-QKSVASWSAIIAA 206 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~------~A~~~~~~m~-~~~~~~~~~li~~ 206 (605)
+++.+|...|++-.+.++++..+... -+.-...+|..|+-+.+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888888777553 2222345666666667777543 3334443332 2344555555554
Q ss_pred HH
Q 007396 207 HA 208 (605)
Q Consensus 207 ~~ 208 (605)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 444
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.91 E-value=4.9e+02 Score=24.72 Aligned_cols=109 Identities=14% Similarity=-0.022 Sum_probs=52.9
Q ss_pred CCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCcchHHHHHHHHHccCChH-HHHH
Q 007396 78 WGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFL----YNEMFERGVEPDNFTFPALFKACAKLQALK-EGMQ 152 (605)
Q Consensus 78 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~ 152 (605)
.+++++|.+++-.- ...+.+.|+...|-++ .+-..+.+.++|......++..+...+.-+ .-..
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45566666655332 2234455555544443 333334456666655555555554443211 1222
Q ss_pred HHHHHHH---hC--CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh
Q 007396 153 IHGHVFK---VG--FECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV 197 (605)
Q Consensus 153 ~~~~~~~---~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 197 (605)
+.+.+++ .| ..-|+.....+...|.+.|++.+|+..|-.-..++.
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 3333332 22 233677888888999999999999888755443333
No 445
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=29.75 E-value=4.9e+02 Score=24.71 Aligned_cols=157 Identities=11% Similarity=0.017 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh-----HHHHHHHHHHHHhCCCCchhHHHH
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL-----KEGMQIHGHVFKVGFECDLFVQNS 171 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~ 171 (605)
.-.+.+|..+.+.+....|+.+.+.+... +-=.+....++......... ......+...++.- ... ..|-.
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~f-~~~l~ 158 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QEF-PEYLE 158 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-HcC-cchHH
Confidence 34567888888888888888888877542 21222333333322211111 11112222222110 001 12333
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC-----ChhHHHHHHHHHhcc
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRP-----EESILVSVLSACTHL 246 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p-----~~~t~~~ll~a~~~~ 246 (605)
++..|+|.=+...-..+|+....| ..+..-|.+.|+.+.|-.++--+...+.... +...-.-++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 333344444455555566655322 2456666677777777666655543321122 223333455555556
Q ss_pred CChhhHHHHHHHHHHh
Q 007396 247 GALDLGKCTHGSLIRN 262 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~ 262 (605)
++++.+.++.+.+...
T Consensus 234 ~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 234 GDWDLCFELVRFLKAL 249 (258)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 6666666666555543
No 446
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.48 E-value=1.1e+02 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 435 HPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
...+|..++-+|.-.+|+.+|.++|....
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777888888888888777653
No 447
>PHA03100 ankyrin repeat protein; Provisional
Probab=29.27 E-value=6.7e+02 Score=26.12 Aligned_cols=13 Identities=23% Similarity=0.087 Sum_probs=7.1
Q ss_pred HHHHHHHHHhCCC
Q 007396 455 VAKIRTEMASKGL 467 (605)
Q Consensus 455 a~~~~~~m~~~~~ 467 (605)
..+-.+.|+.-.+
T Consensus 367 C~~ei~~mk~~~i 379 (480)
T PHA03100 367 CEKEIERMKEIKL 379 (480)
T ss_pred HHHHHHHHHhcEE
Confidence 3445566666544
No 448
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.14 E-value=4.9e+02 Score=24.44 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=37.7
Q ss_pred HHhcCCHHHHHHHHhccC--CCCe-eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccCCHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMA--DKCQ-LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVG-VLSACSHAGLVNEG 353 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a 353 (605)
|....+++.|...+.+.. .|++ .-|+.-+..+.+..+++.+..--++.++ +.||.+-=.. +..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334445556665554443 3333 2344445555555566555554444443 4455432222 22333444455555
Q ss_pred HHHHHHh
Q 007396 354 LLCFDRM 360 (605)
Q Consensus 354 ~~~~~~~ 360 (605)
...+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5554443
No 449
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.97 E-value=4.7e+02 Score=24.22 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 381 (605)
|...+.||-...+ .+-.+.++.+-.-.+.|+.... ++.++...|+.+.|.++++... ....+......++.. .
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-H
Q ss_pred hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHH
Q 007396 382 RAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHH-NLEIGEIAAK 426 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g-~~~~a~~~~~ 426 (605)
.+|.+.||..+.+..+-+-....|..++..|.... +...+.++.+
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~ 197 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLS 197 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHh
No 450
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.94 E-value=1.2e+02 Score=27.95 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 380 MGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
..+.|+.+.|.+++.+. ...| ....|--+...-.+.|+.+.|.+.+++.++++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34455555566665554 3333 233555555555566666666666666666666543
No 451
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=28.23 E-value=3e+02 Score=28.81 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--------CCchHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--------HPSDYV 440 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~ 440 (605)
++..|-..+.-|+..+++++|.++-...+ +...|.+|......+.+...++..+..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456677778888889999998887664 5678888887777777777777777666655421 112223
Q ss_pred HHHHHHHHcCChhHHHHHHH
Q 007396 441 LLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~ 460 (605)
.++....-.|+..+|.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 45555556677777776654
No 452
>PF14044 NETI: NETI protein
Probab=28.02 E-value=43 Score=22.89 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=13.2
Q ss_pred HHHHHHHHHHCCcccCC
Q 007396 502 IHQMEWQLKFEGYSPDI 518 (605)
Q Consensus 502 l~~l~~~m~~~g~~pd~ 518 (605)
+.+.+.+|++.||.|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 44566889999999865
No 453
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.46 E-value=1.6e+02 Score=22.62 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCchhhccccccccCccCCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCC
Q 007396 48 KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVE 111 (605)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 111 (605)
..|...+++.|+-.+... ..+- + ...+.+.+.++++.++.++..+|..+..++-..+.
T Consensus 23 ~~v~~~L~~~gvlt~~~~-~~I~---~--~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDILTDSMA-ESIM---A--KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCCCCHHHH-HHHH---c--CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 446666766665433221 1111 1 33456777888888888777788887777765444
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.38 E-value=3.1e+02 Score=26.62 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 170 NSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 170 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
-.++..+.+.+++....+.+..+. .+..-...+......|++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666666666666653 334455567778889999999998887765
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.22 E-value=5.8e+02 Score=24.65 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
..+..+..-|++.++.+.+.+...+..
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 455556666666677666666655443
No 456
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.90 E-value=1e+02 Score=28.47 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=42.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN 401 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 401 (605)
..+.++.+.+-+++.+.. ++.| ....|-.+-..--++|+++.|.+-+++. .+.|+
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 456788888989888887 4444 3567777778888999999998888876 66664
No 457
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.73 E-value=3.6e+02 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHcCCCHHHHHHHHH
Q 007396 149 EGMQIHGHVFKVGFEC-DLFVQNSLINMYGKCEKVEFASAIFK 190 (605)
Q Consensus 149 ~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (605)
.+.++|..|...|+.. -...|......+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555666665555422 33445555555566666666666654
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.50 E-value=3.5e+02 Score=29.77 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=70.5
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCC
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV----------VYVGVLSACSHAGLVNEGLLCFDRMKLEYR-IVPT 369 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~ 369 (605)
+...++-.|....+++..+++.+.+++ -||.. .|.-.++-=.+-|+-++|+...-.+.++.| +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 455677788889999999999999986 35432 233333333466888999988777765444 5666
Q ss_pred hHH-----HHHH--HHHHHhcCCHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHh
Q 007396 370 VQH-----YGCV--VDLMGRAGMLGEALELIQSM-PIQQNDV---VWRSLLSASKV 414 (605)
Q Consensus 370 ~~~-----~~~l--i~~~~~~g~~~~A~~~~~~m-~~~p~~~---~~~~ll~a~~~ 414 (605)
... |.-+ -..|..++..+.|.+.|++. ..+|... -+..|+.+-.+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh
Confidence 532 2211 12234456678888899887 6677655 45556555443
No 459
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.87 E-value=4e+02 Score=23.96 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=25.5
Q ss_pred HhHHHhcCCHHHHHHHHhccCC------CCeeeHHHHHH-HHHhcCCHH--HHHHHHHHHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMAD------KCQLTYSVMIS-GLAMHGQGK--EALSIFSEML 326 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~------~~~~~~~~li~-~~~~~g~~~--~A~~~~~~m~ 326 (605)
+-.....|++++|.+-++.+.+ +-...|..+.. +++.++.-+ +|..++.-..
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~ 96 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILK 96 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHh
Confidence 3334556677777766665532 12234544444 555555433 4444444333
No 460
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.80 E-value=1.9e+02 Score=21.86 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHH
Q 007396 280 KCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 317 (605)
...+.++|.++++.++.++..+|.....++...|...-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 33456666777777766666666666666666555443
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.75 E-value=6.3e+02 Score=24.65 Aligned_cols=72 Identities=10% Similarity=0.150 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----------cCCHHH
Q 007396 319 LSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----------AGMLGE 388 (605)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 388 (605)
.++|+.|.+.++.|.-..|.-+.-.+++.=.+.....+|+.+.. |..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46777788888888887777766667777777888888887773 22224444444432 366666
Q ss_pred HHHHHHHC
Q 007396 389 ALELIQSM 396 (605)
Q Consensus 389 A~~~~~~m 396 (605)
-.++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 66666655
No 462
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=25.68 E-value=7.5e+02 Score=25.45 Aligned_cols=99 Identities=8% Similarity=-0.075 Sum_probs=47.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
|.++...| ..++..+....... ++...+.....++....+......+.+.+ -.++..+....+..+.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCch
Confidence 66666666 45666555555332 22333333333333222222122222211 234555666677777777666
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHH
Q 007396 183 EFASAIFKQMDQKSVASWSAIIAAHAS 209 (605)
Q Consensus 183 ~~A~~~~~~m~~~~~~~~~~li~~~~~ 209 (605)
+....+...+...+...-.+.+.++..
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 666665555555555444444444444
No 463
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.39 E-value=1.1e+03 Score=27.38 Aligned_cols=120 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 007396 313 GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG--LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEAL 390 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 390 (605)
++.....+.+.+..+. ..-...-+..+|.+|.+.+ ++++|+.....++++ +...|.
T Consensus 792 ~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae 849 (928)
T PF04762_consen 792 SKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAE 849 (928)
T ss_pred cHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHH
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH-------------HcCChhHHH
Q 007396 391 ELIQSMPIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA-------------RAQRWYDVA 456 (605)
Q Consensus 391 ~~~~~m~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~a~ 456 (605)
+.++-+-+--|+. .|+.-|+.| |++.|.-+.++..+ ||.=|...++-+- ..|+|+.|+
T Consensus 850 ~alkyl~fLvDvn~Ly~~ALG~Y----Dl~Lal~VAq~SQk----DPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL 921 (928)
T PF04762_consen 850 EALKYLCFLVDVNKLYDVALGTY----DLELALMVAQQSQK----DPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKAL 921 (928)
T ss_pred HHHhHheeeccHHHHHHHHhhhc----CHHHHHHHHHHhcc----ChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHH
Q ss_pred HHHHHH
Q 007396 457 KIRTEM 462 (605)
Q Consensus 457 ~~~~~m 462 (605)
+-+.++
T Consensus 922 ~~L~~~ 927 (928)
T PF04762_consen 922 RHLSAC 927 (928)
T ss_pred HHHHhh
No 464
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.24 E-value=1.1e+03 Score=27.28 Aligned_cols=256 Identities=7% Similarity=-0.062 Sum_probs=110.8
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 007396 186 SAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265 (605)
Q Consensus 186 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 265 (605)
..+...+..+|...-..-+..+.+.+. .++...+.+.... +|...-...+.++...+........+..+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~--- 695 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS--- 695 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---
Confidence 344444555565555555555555554 3344444444432 23333333333333332211111222222221
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS 345 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 345 (605)
+|..+-...++++...+.- ....+...+..+|...-...+.++...+..+. +.... -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 3444444455555443211 12233344445555444445555555443321 11222 2344444444555555
Q ss_pred ccCCHHH-HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007396 346 HAGLVNE-GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIA 424 (605)
Q Consensus 346 ~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 424 (605)
..+..+. +...+..+.. .++...-...+.++++.|..+.+...+..+-..++..+-...+.++...+.. ++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHH
Confidence 5544322 2233333332 3556666677777777776554433333332234544445555566555543 34344
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 425 AKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+..+++ +| +...-...+.++.+.+.-..+...+....+
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 433332 12 334444455555554222345555544443
No 465
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=25.13 E-value=6e+02 Score=24.15 Aligned_cols=155 Identities=13% Similarity=-0.024 Sum_probs=82.0
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-----HHHHHHHHHhHHhcCCCCChHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLV-----NEGLLCFDRMKLEYRIVPTVQHYGC 375 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-----~~a~~~~~~~~~~~~~~p~~~~~~~ 375 (605)
-.+.++..+.+.|....|..+.+++... +-=....-.++......... ......+.....- +.... .|-.
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l--l~~f~-~~l~ 158 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL--LQEFP-EYLE 158 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH--HHcCc-chHH
Confidence 3556777777777777777777776542 11112222233221111100 0111111111100 00011 1223
Q ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC-------chHHHHHHHHHH
Q 007396 376 VVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP-------SDYVLLSNMYAR 448 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 448 (605)
++-.+.|.=....=..+|+..+ .| ..|+.-|.+.|+++.|-..+--+...++.+. ..-..|+.+...
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 3333333333333445566554 23 3577788889999998887777766654332 223467778888
Q ss_pred cCChhHHHHHHHHHHhCC
Q 007396 449 AQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~ 466 (605)
.|+|+-+.++.+-++.-+
T Consensus 233 ~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALD 250 (258)
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 999999999998887644
No 466
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.13 E-value=6.4e+02 Score=24.50 Aligned_cols=96 Identities=17% Similarity=-0.062 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007396 350 VNEGLLCFDRMKLEYRI---VPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAK 426 (605)
Q Consensus 350 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 426 (605)
.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 57788888888752111 345566667777777888876666666665445577788889999888889998889999
Q ss_pred HHHhhC-CCCCchHHHHHHH
Q 007396 427 NLFQIN-SHHPSDYVLLSNM 445 (605)
Q Consensus 427 ~~~~~~-~~~~~~~~~l~~~ 445 (605)
.+...+ ......+..+...
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHH
Confidence 988843 2233344444433
No 467
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.04 E-value=3.1e+02 Score=20.78 Aligned_cols=62 Identities=10% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHH
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 216 (605)
..++..+++.|+-.. ...-...+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346666666664311 11222233456678888888888888888888888888777655443
No 468
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.80 E-value=7.4e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=-0.109 Sum_probs=19.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
.+.+.+++..|.++|+++......|+...
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 34556778888888888877655554443
No 469
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=24.76 E-value=1.7e+02 Score=28.38 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHH-HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 007396 367 VPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRS-LLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVL 441 (605)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (605)
.-|+..|...+.-..+.|.+.+.-.++.+. ...|+ +..|-. --.-+..+++++.+..+|.+.++++|++|..+..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 345555555554444555666666666555 34453 445533 2223567899999999999999999998887653
No 470
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.71 E-value=5.8e+02 Score=23.87 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=34.5
Q ss_pred HHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007396 287 GLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV 335 (605)
Q Consensus 287 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (605)
+..+|+-..+|.+.....|+..+ ..+++++|.+++.++-+.|..|...
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 44566666666666666666654 4577899999999998888888654
No 471
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.44 E-value=3.9e+02 Score=24.20 Aligned_cols=60 Identities=10% Similarity=0.003 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch-HHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD-YVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
....++..|...||++.|-++|.-+++..+-|... +..=+.++.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 44556666666666777766666666655444332 2223334444444433335555553
No 472
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=24.38 E-value=4.1e+02 Score=22.00 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=68.9
Q ss_pred ChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchH---HHHHHHHHcc-------CChHH
Q 007396 80 SMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTF---PALFKACAKL-------QALKE 149 (605)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~~~~~~-------~~~~~ 149 (605)
++.-|..++-+....+ .....++.+.+..-.-.++++..++....-.|..+.- +.-++.|-.. +....
T Consensus 4 Np~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRl 81 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRL 81 (126)
T ss_pred cHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhh
Confidence 4555666666654433 3677777888777777888888888877655554432 2223333321 12333
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
.-.+++.+++.++......+..+=..|.+-.++.||..+|+-+.
T Consensus 82 vcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 82 VCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 34556666677766556666666666777777888888777543
No 473
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=24.20 E-value=1e+03 Score=26.64 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=35.2
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC-----hhhHHHHHHHHHHhcCC
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA-----LDLGKCTHGSLIRNISA 265 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~~ 265 (605)
.+.++++.|+..+.+|.+.| ..|....-..++.+....|. ...+...+......|.+
T Consensus 269 irgsD~daAl~~la~ml~~G-edp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAG-EDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 35688999999999999988 77765555555555544442 22233344444455544
No 474
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=24.14 E-value=34 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=16.2
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCh
Q 007396 210 NGLWSECLKLFGEMNNEKCWRPEE 233 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~~p~~ 233 (605)
.-+++.|+..|.++...|.++|+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 447788888888888877666664
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.96 E-value=1.8e+02 Score=23.36 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 007396 101 TLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA 146 (605)
Q Consensus 101 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 146 (605)
.++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3455555555666677777777776655566665555555555553
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=23.89 E-value=5.5e+02 Score=23.27 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.7
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLRE 328 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (605)
..+.++..+...|+++.|-+.|.-+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 5677888888899999999999988875
No 477
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.87 E-value=1.3e+02 Score=30.88 Aligned_cols=56 Identities=0% Similarity=-0.066 Sum_probs=47.8
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.....++++.|..++.++++++|+++..|..-+.++.+.+++..|..=.....+..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 34566789999999999999999998888888899999999999988777777655
No 478
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=23.61 E-value=9.3e+02 Score=25.84 Aligned_cols=177 Identities=11% Similarity=-0.025 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHH-
Q 007396 234 SILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGL- 309 (605)
Q Consensus 234 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~- 309 (605)
.+|..-+.--...|+.+...-.++...-.- ..-...|--.+.-....|+.+-|..++.... .+.......+-.++
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 455555555566666666666665544211 1112233333333344477777777666543 22222222222222
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHH---HHHHHhHHhcCCCCChHHHHHHHHH-----H
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVV-YVGVLSACSHAGLVNEGL---LCFDRMKLEYRIVPTVQHYGCVVDL-----M 380 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~---~~~~~~~~~~~~~p~~~~~~~li~~-----~ 380 (605)
-.+|++..|..+++.....- |+..- -..-+..-.+.|..+.+. .++.... + | .-+....+.+.-- +
T Consensus 377 e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-~-~-~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-E-G-KENNGILEKLYVKFARLRY 451 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-c-c-ccCcchhHHHHHHHHHHHH
Confidence 34678999999999888753 55431 112233445567777766 3333332 1 1 1111122222222 2
Q ss_pred HhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcC
Q 007396 381 GRAGMLGEALELIQSM-PIQ-QNDVVWRSLLSASKVHH 416 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g 416 (605)
.-.++.+.|..++.++ ++- ++...|..++.-+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3367889999999988 444 45668888887766554
No 479
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=23.59 E-value=21 Score=25.39 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.9
Q ss_pred eeEEEecCCccccccCccccCCC
Q 007396 581 REIIVRDRKRFHRFKDGTCSCRD 603 (605)
Q Consensus 581 ~~i~~rd~~~~h~~~~g~csc~~ 603 (605)
+.|=+.|.+..|+|+||+-+-.|
T Consensus 8 ksi~LkDGstvyiFKDGKMamEd 30 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAMED 30 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEEE
T ss_pred eeEecCCCCEEEEEcCCceehhh
Confidence 46778899999999999976543
No 480
>PF15161 Neuropep_like: Neuropeptide-like
Probab=23.26 E-value=38 Score=22.87 Aligned_cols=17 Identities=29% Similarity=0.768 Sum_probs=12.4
Q ss_pred ccccCCcchhhHHhhhhh
Q 007396 562 LRMCNDCHTYTKLISVIY 579 (605)
Q Consensus 562 ~~~~~~~~~~~~~~s~~~ 579 (605)
-|-|.|||.+. |+.+..
T Consensus 13 sRPCVDCHAFe-fmqRAL 29 (65)
T PF15161_consen 13 SRPCVDCHAFE-FMQRAL 29 (65)
T ss_pred CCCchhhHHHH-HHHHHH
Confidence 47899999876 665443
No 481
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.22 E-value=4.8e+02 Score=25.20 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=78.0
Q ss_pred hcCCHHHHHHHHHHCCCCC-CHHHHH----HHHHHH-HhcCChHHHHHHHHHHHhhCCC------------------CCc
Q 007396 382 RAGMLGEALELIQSMPIQQ-NDVVWR----SLLSAS-KVHHNLEIGEIAAKNLFQINSH------------------HPS 437 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m~~~p-~~~~~~----~ll~a~-~~~g~~~~a~~~~~~~~~~~~~------------------~~~ 437 (605)
..|.-++|+++++..++.- ...+|+ +=...| .-.+|++.+.++.+++..++-. .|.
T Consensus 61 ~ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPk 140 (403)
T COG3867 61 TNGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPK 140 (403)
T ss_pred cCChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcH
Confidence 4567778888888774210 000110 111112 2346788888888888776521 233
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEe---cCCCCcchHHHHHHHHHHHHHHHHCCc
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVS---QDRSHPAWDNIYEMIHQMEWQLKFEGY 514 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~m~~~g~ 514 (605)
.+..|.--..+..-++--...+..|++.|+.| .|+.+.+....=+. |. -...+..-+++.+-.+..++ .
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~p----dmVQVGNEtn~gflwp~Ge--~~~f~k~a~L~n~g~~avre--v 212 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILP----DMVQVGNETNGGFLWPDGE--GRNFDKMAALLNAGIRAVRE--V 212 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCc----cceEeccccCCceeccCCC--CcChHHHHHHHHHHhhhhhh--c
Confidence 34333333333334555667889999999987 57777765533222 32 22556666666665555554 6
Q ss_pred ccCCccccccCch
Q 007396 515 SPDISQVLRDVDE 527 (605)
Q Consensus 515 ~pd~~~~~~~~~~ 527 (605)
.|+....+|.-+.
T Consensus 213 ~p~ikv~lHla~g 225 (403)
T COG3867 213 SPTIKVALHLAEG 225 (403)
T ss_pred CCCceEEEEecCC
Confidence 7877777775543
No 482
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.18 E-value=7.6e+02 Score=24.29 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHhcCC------------HHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 367 VPTVQHYGCVVDLMGRAGM------------LGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~------------~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
+-|+.+|-.++..--..-. .+.-+.++++. ...|+.. .+..++..+.+.-+.+...+.+++++..+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q ss_pred CCCCchHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 007396 433 SHHPSDYVLLSNMYAR---AQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQL 509 (605)
Q Consensus 433 ~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m 509 (605)
|.++..+...++.... .-.+++..++|.+....-.....+. .......-.....+...+-++..-+
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~-----------~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR-----------MTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc-----------cccccchhhHHHHHHHHHHHHHHHH
Q ss_pred HHCCcc
Q 007396 510 KFEGYS 515 (605)
Q Consensus 510 ~~~g~~ 515 (605)
++.||.
T Consensus 165 ~~aG~~ 170 (321)
T PF08424_consen 165 RQAGYT 170 (321)
T ss_pred HHCCch
No 483
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.94 E-value=5.6e+02 Score=22.62 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=12.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhH
Q 007396 340 VLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
-|.-|...|+++.+...|....
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHH
Confidence 4445556666666666665554
No 484
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.56 E-value=45 Score=25.79 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=30.7
Q ss_pred EeecccccCCcchhhHHhhhhhceeEEEecCCccccccCcc
Q 007396 558 IARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGT 598 (605)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~~g~ 598 (605)
+++| +-|.+-.+|..+-..+.+..|+-.-.++ |+|+||.
T Consensus 47 Li~~-g~~~tR~eAv~~gq~Ll~~gii~HV~~~-h~F~D~~ 85 (93)
T cd04440 47 LLAQ-GDCRTREEAVILGVGLCNNGFMHHVLEK-SEFKDEP 85 (93)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHhCCCEEecCCC-cCcCCcC
Confidence 3344 4566777999999999999999887766 7999985
No 485
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.55 E-value=4.1e+02 Score=28.74 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
+...|..-+..+...++.. ....+.+...-.-.+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 4455777777666554332 55556665543334555677888888888888888888876654422 2234555666
Q ss_pred HHHcCCCHHHHHHHHHhc
Q 007396 175 MYGKCEKVEFASAIFKQM 192 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m 192 (605)
.+.++|+...+..+-+.+
T Consensus 447 ~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHH---------------
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 677777776665555444
No 486
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.54 E-value=9e+02 Score=24.88 Aligned_cols=235 Identities=9% Similarity=-0.056 Sum_probs=133.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHH
Q 007396 138 FKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECL 217 (605)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 217 (605)
|+++...| +.+...+-...... ++...+.....++....+......+.+.+...+.......+.++...+..+-.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~- 119 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE- 119 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH-
Confidence 55665666 45666555555443 23344444444444344444467777777777777788888888877765544
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC
Q 007396 218 KLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297 (605)
Q Consensus 218 ~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 297 (605)
..+..+.+. ++...-...+.++...+. + .........+ .++..+-..-+.++++.++.+..-.+-.-....
T Consensus 120 ~~L~~~L~~----~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~ 190 (410)
T TIGR02270 120 PWLEPLLAA----SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDS 190 (410)
T ss_pred HHHHHHhcC----CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCC
Confidence 445555543 344455566677765442 2 2223333333 556667777777777777654444433334455
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 377 (605)
|...-..-+.+....|. .+|...+..... .|+......+.......|. +++...+..+.++ + .+-...+
T Consensus 191 ~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~--~vr~~a~ 259 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----A--ATRREAL 259 (410)
T ss_pred CHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----h--hhHHHHH
Confidence 66666666777778887 667666665433 2233332333333333233 3666666655532 2 2555677
Q ss_pred HHHHhcCCHHHHHHHHHHCC
Q 007396 378 DLMGRAGMLGEALELIQSMP 397 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~ 397 (605)
.++++.|+...+.-+++.|.
T Consensus 260 ~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 260 RAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHcCCcchHHHHHHHhc
Confidence 78888888777777777774
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.32 E-value=3.5e+02 Score=25.46 Aligned_cols=14 Identities=21% Similarity=0.019 Sum_probs=5.8
Q ss_pred HHHHHhcCChHHHH
Q 007396 409 LSASKVHHNLEIGE 422 (605)
Q Consensus 409 l~a~~~~g~~~~a~ 422 (605)
..++...|+.+...
T Consensus 225 ~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 225 LECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHhCCHHHHH
Confidence 33334444444433
No 488
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.30 E-value=7.6e+02 Score=26.02 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=22.5
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh
Q 007396 130 DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLF 167 (605)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 167 (605)
+...+..++.++...+....+..+++.+++.|..|..+
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 44445555555544444556777777777777665443
No 489
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.16 E-value=1.3e+03 Score=26.52 Aligned_cols=206 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHh---CCCCCCChhHHHHHHHHHhccCCh--hhHHHHHHHHHHhcCCchHHHHhHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNN---EKCWRPEESILVSVLSACTHLGAL--DLGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~p~~~t~~~ll~a~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
|..|+..|...|+.++|++++.+... .. -.--...+--++.-.-..+.. +...++-....+........+++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~-d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDT-DSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccccc-ccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Q ss_pred HhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL----- 349 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 349 (605)
-.--+.+=+.++....+..-... -+..+++.+....-.++..-.+.++.-|...=+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~-------------------l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~ 646 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPK-------------------LLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQAST 646 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcc-------------------hhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCc
Q ss_pred ------------HHHHHHHHHHhHHhcCCCCCh--------HHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Q 007396 350 ------------VNEGLLCFDRMKLEYRIVPTV--------QHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLL 409 (605)
Q Consensus 350 ------------~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 409 (605)
.+......+.-. ...|.. ..|.-..-.++|.|+.++|+.++
T Consensus 647 ~~kg~e~~E~~~rekl~~~l~~s~---~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iy---------------- 707 (877)
T KOG2063|consen 647 DGKGEEAPETTVREKLLDFLESSD---LYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIY---------------- 707 (877)
T ss_pred hhccccchhhhHHHHHHHHhhhhc---ccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHH----------------
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
.-..+|++.|........+.++.+...|..++..|
T Consensus 708 --v~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 708 --VHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred --HHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 490
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=21.03 E-value=97 Score=22.97 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCCCccceEEECCEEEEEEecC----CCCcchHHHHHHH
Q 007396 457 KIRTEMASKGLNQSPGFSLVEVARKVYKFVSQD----RSHPAWDNIYEMI 502 (605)
Q Consensus 457 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~----~~~~~~~~~~~~l 502 (605)
.+++.+.++|..| ++..+.-+++|| .+|...+.....+
T Consensus 23 ~Vy~AL~EKGYnP--------inQivGYllSGDPaYItsh~nAR~lIr~~ 64 (79)
T PF06135_consen 23 QVYAALEEKGYNP--------INQIVGYLLSGDPAYITSHNNARNLIRKI 64 (79)
T ss_pred HHHHHHHHcCCCh--------HHHHHhheecCCCccccCcccHHHHHHHH
Confidence 5677788999877 455566678887 4555555444333
No 491
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.94 E-value=7.7e+02 Score=23.91 Aligned_cols=80 Identities=8% Similarity=-0.079 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHCCChhHHHHHHH
Q 007396 147 LKEGMQIHGHVFKVGF----ECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-KSVASWSAIIAAHASNGLWSECLKLFG 221 (605)
Q Consensus 147 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (605)
.+.+.+.+......+. ..++.....++....+.|+.+.-..+++.... .+..-...++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3445555555554311 23444455555555566665554444444433 234445555666555555555555555
Q ss_pred HHHhC
Q 007396 222 EMNNE 226 (605)
Q Consensus 222 ~m~~~ 226 (605)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55543
No 492
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.91 E-value=5.2e+02 Score=21.92 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=11.8
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 202 AIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
.++..+.+.++.-.|.++|+++.+.+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 33444444444444444555444444
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.82 E-value=3.1e+02 Score=24.46 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=22.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.+..|.+.|.+++|.+++++..+ +|++..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 34568999999999999999888 665443
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.80 E-value=1.9e+02 Score=20.67 Aligned_cols=45 Identities=2% Similarity=-0.037 Sum_probs=26.4
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHH
Q 007396 195 KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLS 241 (605)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~ 241 (605)
+..+.++.++..++...-.++++..+.+..+.| ..+..+|.--..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g--~I~~d~~lK~vR 50 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG--SIDLDTFLKQVR 50 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 444556666777776666777777777777776 234444443333
No 495
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=20.78 E-value=1.3e+03 Score=26.33 Aligned_cols=307 Identities=16% Similarity=0.119 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHCCC-------CCCcchHHHHHHHHHccC----ChHHHHHHHHHH----HHhCCCCchhHHHHHHHHHH
Q 007396 113 EEALFLYNEMFERGV-------EPDNFTFPALFKACAKLQ----ALKEGMQIHGHV----FKVGFECDLFVQNSLINMYG 177 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~-------~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~ 177 (605)
+....+++++...|+ .+.-+-|..++.-+.+.. ......++|..+ ...|.. +. .|.--.
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~-~e-----AI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLP-SE-----AIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCCh-HH-----HHHHHH
Confidence 345667777777663 234566777666554432 223344555443 334432 22 233345
Q ss_pred cCCCHHHHHHHHHhcCC------------------CC--hhHHHH--HHH--HHHHCCChhHHHHHHHHHHhCCCCCCCh
Q 007396 178 KCEKVEFASAIFKQMDQ------------------KS--VASWSA--IIA--AHASNGLWSECLKLFGEMNNEKCWRPEE 233 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~------------------~~--~~~~~~--li~--~~~~~g~~~~A~~~~~~m~~~g~~~p~~ 233 (605)
+.|+++.|..++++... |+ ...... +.. ......++.+|..+..+....- -.|+.
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l-~~~~~ 450 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL-KAPMH 450 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh-CcCcc
Confidence 67888888877766521 11 111111 112 2345788999998888876542 22222
Q ss_pred h-------HHHHHHH-HHhccCChhhHHHHHHHHHHh----cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC----C
Q 007396 234 S-------ILVSVLS-ACTHLGALDLGKCTHGSLIRN----ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD----K 297 (605)
Q Consensus 234 ~-------t~~~ll~-a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~ 297 (605)
. .+..+-. .....|+++.+..+-+..... -..+.+..+..+..+..-.|++++|..+.....+ .
T Consensus 451 ~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 451 SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 1 2222221 124567888888777666543 3445677788888888889999999988766543 2
Q ss_pred Cee---eHHHHHH--HHHhcCCH--HHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHhcc-CCHHHHHHHHHHhHHh
Q 007396 298 CQL---TYSVMIS--GLAMHGQG--KEALSIFSEMLRE--GLEPD----DVVYVGVLSACSHA-GLVNEGLLCFDRMKLE 363 (605)
Q Consensus 298 ~~~---~~~~li~--~~~~~g~~--~~A~~~~~~m~~~--g~~p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~ 363 (605)
++. .|..+.. .+...|+. .+.+..|...... +-+|- ..+...++.++.+. +...++..-+.--. .
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~-~ 609 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGS-V 609 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhh-h
Confidence 544 3333332 24455632 2233333333221 11121 23455555555441 11222222222221 1
Q ss_pred cCCCCChHHH--HHHHHHHHhcCCHHHHHHHHHHC-----CCCCCHH--HHHHHHH--HHHhcCChHHHHHHHHH
Q 007396 364 YRIVPTVQHY--GCVVDLMGRAGMLGEALELIQSM-----PIQQNDV--VWRSLLS--ASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 364 ~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~--~~~~ll~--a~~~~g~~~~a~~~~~~ 427 (605)
+...|-...+ ..|+..+...|++++|...++++ .-.|.+. .-...+. -....||.+.+.....+
T Consensus 610 ~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 610 YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1222222222 36778888899999999888877 1112221 2222222 23556777777665555
No 496
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.76 E-value=6.3e+02 Score=22.79 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=13.8
Q ss_pred HHcCChhHHHHHHHHHHh
Q 007396 447 ARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~ 464 (605)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467888888888887764
No 497
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.56 E-value=1.4e+03 Score=26.93 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=12.7
Q ss_pred HHHhcCCHHHHHHHHhcc
Q 007396 277 MYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 277 ~y~~~g~~~~A~~~f~~m 294 (605)
+|..+|...+|...|.+.
T Consensus 929 ~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eeecCCchHHHHHHHHHH
Confidence 466777777777777654
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.50 E-value=4.7e+02 Score=22.88 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=19.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccC
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLG 247 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~ 247 (605)
++..+...+..-.|.++++.+.+.+ ..++..|.--.|..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHHCC
Confidence 3333333444444555555555554 4444444444444444433
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=20.48 E-value=4e+02 Score=20.37 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 230 RPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 230 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
.|+...|...+..-...+.-+. ++|+.....|+..|..+|..+++...-+=..+...++++.|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 500
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.39 E-value=9.1e+02 Score=24.50 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHH--ccCChHHHHHHHHHHHHh
Q 007396 99 FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF--TFPALFKACA--KLQALKEGMQIHGHVFKV 160 (605)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 160 (605)
|.... .+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 135 ~~~a~-~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAK-ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33334 344778899999999998886 555554 3334444443 345677888888776654
Done!