Query 007396
Match_columns 605
No_of_seqs 711 out of 4475
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 00:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.2E-37 1.4E-41 333.0 36.1 423 32-466 85-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-36 6.1E-41 328.0 29.4 415 74-506 61-543 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5.1E-33 256.1 21.2 182 199-382 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 3E-28 1E-32 253.8 20.7 197 84-281 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 7.2E-26 2.5E-30 231.0 35.9 368 74-450 7-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-24 4.6E-29 221.6 39.8 354 102-465 5-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 6.5E-22 2.2E-26 209.3 32.7 385 74-466 14-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.8E-21 9.7E-26 200.9 34.9 298 95-401 25-361 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.1E-21 7E-26 201.9 33.1 337 114-461 10-405 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.7E-21 5.9E-26 206.1 30.3 395 37-442 15-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 5.9E-20 2E-24 195.5 32.1 379 74-466 33-492 (537)
12 3fp2_A TPR repeat-containing p 99.8 1.3E-18 4.4E-23 185.1 30.4 387 39-439 36-499 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.3E-17 7.8E-22 165.3 35.3 305 131-466 3-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 9.3E-18 3.2E-22 168.2 32.0 317 95-449 2-353 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.6E-23 173.6 21.2 344 77-459 15-366 (449)
16 3hym_B Cell division cycle pro 99.8 5E-17 1.7E-21 160.9 28.3 286 128-452 19-321 (330)
17 3hym_B Cell division cycle pro 99.8 2.1E-16 7.2E-21 156.4 27.9 264 196-465 21-299 (330)
18 1fch_A Peroxisomal targeting s 99.8 1.3E-16 4.6E-21 160.7 25.6 279 178-461 37-355 (368)
19 1fch_A Peroxisomal targeting s 99.7 1.5E-16 5.2E-21 160.3 23.1 284 109-428 38-356 (368)
20 2xm6_A Protein corresponding t 99.7 3.8E-15 1.3E-19 156.4 34.2 351 78-448 56-452 (490)
21 2xm6_A Protein corresponding t 99.7 3.3E-14 1.1E-18 149.3 41.0 353 93-467 36-434 (490)
22 2ooe_A Cleavage stimulation fa 99.7 5.2E-15 1.8E-19 157.1 34.5 392 62-465 12-492 (530)
23 4g1t_A Interferon-induced prot 99.7 6.2E-15 2.1E-19 154.0 33.9 365 96-476 51-470 (472)
24 3mkr_A Coatomer subunit epsilo 99.7 6.7E-16 2.3E-20 150.0 24.5 267 177-458 10-287 (291)
25 1b89_A Protein (clathrin heavy 99.7 9.2E-18 3.1E-22 166.9 10.9 250 178-459 15-266 (449)
26 4eqf_A PEX5-related protein; a 99.7 2.9E-16 9.8E-21 158.2 21.7 259 198-461 66-352 (365)
27 4eqf_A PEX5-related protein; a 99.7 2.7E-16 9.1E-21 158.5 19.7 225 131-361 65-308 (365)
28 2ooe_A Cleavage stimulation fa 99.7 3E-14 1E-18 151.1 34.5 393 32-434 14-495 (530)
29 3cv0_A Peroxisome targeting si 99.7 1.9E-15 6.5E-20 149.3 23.3 257 200-462 24-312 (327)
30 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.1E-22 178.0 7.2 165 264-431 123-310 (1134)
31 3spa_A Mtrpol, DNA-directed RN 99.7 5.1E-17 1.7E-21 173.9 10.7 151 162-313 123-286 (1134)
32 3cv0_A Peroxisome targeting si 99.7 1.5E-14 5E-19 142.9 25.4 252 138-395 28-311 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 5.7E-15 1.9E-19 143.4 21.5 247 204-466 6-265 (291)
34 1xi4_A Clathrin heavy chain; a 99.7 8.2E-13 2.8E-17 146.1 38.9 366 42-457 999-1376(1630)
35 1xi4_A Clathrin heavy chain; a 99.6 7.7E-13 2.6E-17 146.3 37.7 339 74-460 993-1340(1630)
36 4g1t_A Interferon-induced prot 99.6 3.3E-14 1.1E-18 148.5 24.9 362 62-442 50-470 (472)
37 3uq3_A Heat shock protein STI1 99.6 2.4E-13 8.4E-18 129.0 20.7 225 198-465 6-236 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.2E-13 1.1E-17 129.7 19.1 241 210-459 18-269 (275)
39 3uq3_A Heat shock protein STI1 99.5 6.9E-13 2.3E-17 125.8 20.6 234 165-442 4-253 (258)
40 2pl2_A Hypothetical conserved 99.5 5E-13 1.7E-17 123.7 18.2 194 265-463 2-212 (217)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.2E-13 1.1E-17 129.7 17.0 182 74-260 13-204 (275)
42 3e4b_A ALGK; tetratricopeptide 99.5 5.3E-12 1.8E-16 130.6 26.9 372 37-463 12-419 (452)
43 3u4t_A TPR repeat-containing p 99.5 8.3E-13 2.8E-17 126.6 19.0 241 169-448 6-267 (272)
44 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-11 4.1E-16 117.0 23.9 205 197-437 37-244 (252)
45 2pl2_A Hypothetical conserved 99.5 4.1E-12 1.4E-16 117.5 19.4 192 198-396 6-211 (217)
46 2vq2_A PILW, putative fimbrial 99.5 1.1E-11 3.7E-16 114.7 22.3 197 267-465 7-211 (225)
47 2ho1_A Type 4 fimbrial biogene 99.4 8.4E-12 2.9E-16 118.1 21.1 197 268-466 37-239 (252)
48 3e4b_A ALGK; tetratricopeptide 99.4 8.4E-12 2.9E-16 129.1 22.7 343 102-467 9-389 (452)
49 2h6f_A Protein farnesyltransfe 99.4 4.9E-12 1.7E-16 127.0 19.6 241 167-448 98-365 (382)
50 4a1s_A PINS, partner of inscut 99.4 2.3E-12 7.7E-17 131.8 17.4 197 269-465 127-372 (411)
51 2q7f_A YRRB protein; TPR, prot 99.4 3.9E-12 1.3E-16 119.5 17.7 138 301-441 93-232 (243)
52 3sf4_A G-protein-signaling mod 99.4 5.3E-12 1.8E-16 128.5 20.1 196 269-464 88-335 (406)
53 2vq2_A PILW, putative fimbrial 99.4 2.5E-11 8.6E-16 112.3 22.9 210 196-441 7-221 (225)
54 1ouv_A Conserved hypothetical 99.4 5.1E-11 1.7E-15 114.3 25.7 228 196-466 5-252 (273)
55 1ouv_A Conserved hypothetical 99.4 6.4E-11 2.2E-15 113.6 26.0 229 165-435 5-255 (273)
56 2q7f_A YRRB protein; TPR, prot 99.4 4.4E-12 1.5E-16 119.1 17.3 198 266-466 21-223 (243)
57 3ro2_A PINS homolog, G-protein 99.4 9.6E-12 3.3E-16 122.7 20.4 261 203-465 11-332 (338)
58 3u4t_A TPR repeat-containing p 99.4 3.7E-11 1.3E-15 115.0 22.5 226 131-361 3-248 (272)
59 3sf4_A G-protein-signaling mod 99.4 1.2E-11 4.1E-16 125.8 19.4 153 302-454 190-365 (406)
60 2h6f_A Protein farnesyltransfe 99.4 1.8E-11 6.1E-16 122.9 17.5 217 244-466 108-349 (382)
61 4a1s_A PINS, partner of inscut 99.3 1.5E-11 5.1E-16 125.6 17.1 132 302-433 226-374 (411)
62 3ro2_A PINS homolog, G-protein 99.3 3.3E-11 1.1E-15 118.8 18.3 98 336-433 225-334 (338)
63 4abn_A Tetratricopeptide repea 99.3 9.4E-12 3.2E-16 129.6 14.3 190 267-460 101-316 (474)
64 3vtx_A MAMA; tetratricopeptide 99.3 1.4E-10 4.7E-15 103.9 20.2 164 299-466 5-171 (184)
65 2ond_A Cleavage stimulation fa 99.3 5.9E-10 2E-14 109.0 25.8 218 214-436 33-275 (308)
66 3nf1_A KLC 1, kinesin light ch 99.3 2.7E-11 9.3E-16 118.2 13.3 241 198-464 28-306 (311)
67 3ulq_A Response regulator aspa 99.3 2E-10 6.8E-15 116.2 20.1 159 203-361 109-291 (383)
68 3ulq_A Response regulator aspa 99.3 9.5E-11 3.2E-15 118.6 16.9 225 239-464 109-367 (383)
69 4e6h_A MRNA 3'-END-processing 99.3 7.5E-09 2.6E-13 110.9 31.9 215 216-436 328-575 (679)
70 3vtx_A MAMA; tetratricopeptide 99.2 1.6E-10 5.4E-15 103.5 15.8 166 267-435 4-174 (184)
71 2ond_A Cleavage stimulation fa 99.2 9E-10 3.1E-14 107.7 22.2 215 113-362 33-269 (308)
72 1hz4_A MALT regulatory protein 99.2 6.2E-09 2.1E-13 104.7 28.4 259 205-464 22-321 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.2 3.6E-10 1.2E-14 122.5 18.3 160 300-464 10-173 (723)
74 4e6h_A MRNA 3'-END-processing 99.2 6.4E-09 2.2E-13 111.4 27.6 411 50-467 54-572 (679)
75 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.6E-14 97.6 17.9 160 269-465 9-173 (186)
76 3nf1_A KLC 1, kinesin light ch 99.2 7.7E-11 2.6E-15 115.0 10.3 165 96-261 27-223 (311)
77 3q15_A PSP28, response regulat 99.1 2.3E-08 8E-13 100.7 27.4 158 204-361 108-288 (378)
78 4abn_A Tetratricopeptide repea 99.1 8.7E-10 3E-14 114.7 17.0 210 112-325 84-318 (474)
79 3q15_A PSP28, response regulat 99.1 1.9E-09 6.6E-14 108.7 18.9 225 239-464 107-364 (378)
80 1hz4_A MALT regulatory protein 99.1 3E-08 1E-12 99.5 27.2 259 102-361 20-320 (373)
81 3as5_A MAMA; tetratricopeptide 99.1 4.5E-09 1.5E-13 93.5 18.9 168 233-436 8-178 (186)
82 4i17_A Hypothetical protein; T 99.1 2.9E-09 9.8E-14 98.9 16.8 189 267-466 6-210 (228)
83 4i17_A Hypothetical protein; T 99.1 3.8E-09 1.3E-13 98.1 17.5 204 230-445 4-223 (228)
84 3edt_B KLC 2, kinesin light ch 99.0 5E-09 1.7E-13 100.3 15.3 30 435-464 251-280 (283)
85 1qqe_A Vesicular transport pro 99.0 2.6E-09 8.8E-14 103.5 13.2 187 277-463 46-267 (292)
86 3qky_A Outer membrane assembly 98.9 8.1E-08 2.8E-12 91.1 20.3 204 267-511 14-247 (261)
87 4gyw_A UDP-N-acetylglucosamine 98.9 2.8E-08 9.6E-13 107.8 18.7 162 96-262 9-174 (723)
88 3mv2_B Coatomer subunit epsilo 98.9 3.7E-07 1.3E-11 87.0 23.1 238 178-438 25-289 (310)
89 3mv2_B Coatomer subunit epsilo 98.9 1.7E-07 5.7E-12 89.4 20.6 240 204-466 20-283 (310)
90 3edt_B KLC 2, kinesin light ch 98.9 9.5E-09 3.3E-13 98.3 12.0 44 284-327 234-280 (283)
91 2fo7_A Synthetic consensus TPR 98.9 5.1E-08 1.8E-12 81.3 15.2 124 340-465 7-132 (136)
92 1qqe_A Vesicular transport pro 98.9 3.1E-08 1.1E-12 95.8 14.6 166 269-434 78-272 (292)
93 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.9E-07 9.8E-12 85.1 19.5 180 269-468 5-216 (225)
94 3qky_A Outer membrane assembly 98.8 1.6E-07 5.6E-12 89.0 17.8 203 231-453 13-249 (261)
95 2fo7_A Synthetic consensus TPR 98.8 1.9E-07 6.5E-12 77.7 16.1 131 301-434 3-135 (136)
96 3qou_A Protein YBBN; thioredox 98.8 1E-07 3.5E-12 91.9 15.5 173 286-463 104-282 (287)
97 4ga2_A E3 SUMO-protein ligase 98.7 1.2E-08 4.2E-13 87.8 6.8 140 308-451 6-149 (150)
98 2uy1_A Cleavage stimulation fa 98.7 1.3E-05 4.6E-10 83.1 29.7 182 79-262 28-242 (493)
99 2pzi_A Probable serine/threoni 98.7 4E-08 1.4E-12 106.9 10.6 167 279-451 402-583 (681)
100 2r5s_A Uncharacterized protein 98.7 1.6E-07 5.6E-12 83.0 11.6 154 306-464 13-172 (176)
101 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 9E-12 98.5 15.3 159 281-443 2-169 (568)
102 2vsy_A XCC0866; transferase, g 98.6 6.1E-07 2.1E-11 95.6 17.7 147 246-396 2-154 (568)
103 2pzi_A Probable serine/threoni 98.6 6E-07 2.1E-11 97.6 17.7 189 244-438 402-609 (681)
104 3rjv_A Putative SEL1 repeat pr 98.6 2E-06 6.8E-11 78.6 18.5 159 300-467 19-199 (212)
105 2uy1_A Cleavage stimulation fa 98.6 3E-06 1E-10 88.0 21.8 358 77-464 6-412 (493)
106 3urz_A Uncharacterized protein 98.6 6.1E-07 2.1E-11 81.8 14.8 180 202-410 9-198 (208)
107 3gyz_A Chaperone protein IPGC; 98.6 2.6E-07 8.8E-12 79.2 10.9 97 370-466 36-134 (151)
108 2ifu_A Gamma-SNAP; membrane fu 98.6 8E-07 2.7E-11 86.5 15.7 102 180-293 30-140 (307)
109 4ga2_A E3 SUMO-protein ligase 98.6 5.2E-08 1.8E-12 83.7 6.3 122 341-465 4-129 (150)
110 3qou_A Protein YBBN; thioredox 98.6 1.5E-06 5.3E-11 83.5 17.5 161 130-293 116-280 (287)
111 2ifu_A Gamma-SNAP; membrane fu 98.6 1.2E-06 4E-11 85.3 16.0 219 210-457 4-253 (307)
112 2vgx_A Chaperone SYCD; alterna 98.6 4.8E-07 1.6E-11 77.4 11.3 98 369-466 20-119 (148)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.1E-06 7.1E-11 78.2 16.2 125 337-466 9-151 (213)
114 3urz_A Uncharacterized protein 98.5 2.5E-06 8.7E-11 77.6 16.1 178 137-335 10-191 (208)
115 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.6E-06 5.6E-11 80.0 14.7 184 232-436 3-218 (225)
116 3dra_A Protein farnesyltransfe 98.5 1.7E-05 6E-10 76.1 22.2 149 313-464 124-286 (306)
117 3rjv_A Putative SEL1 repeat pr 98.5 4.4E-06 1.5E-10 76.3 17.0 171 84-264 5-199 (212)
118 2r5s_A Uncharacterized protein 98.5 1.6E-06 5.6E-11 76.5 13.2 151 172-326 12-171 (176)
119 3u3w_A Transcriptional activat 98.5 9E-06 3.1E-10 78.4 19.6 160 305-464 81-265 (293)
120 3dra_A Protein farnesyltransfe 98.5 4.8E-05 1.6E-09 73.1 24.2 225 212-443 48-300 (306)
121 2qfc_A PLCR protein; TPR, HTH, 98.5 4E-06 1.4E-10 80.9 17.0 162 303-464 79-265 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.5 4.5E-06 1.5E-10 76.0 16.0 92 169-262 9-100 (213)
123 2xcb_A PCRH, regulatory protei 98.5 2E-06 6.8E-11 72.9 12.5 97 370-466 18-116 (142)
124 1a17_A Serine/threonine protei 98.5 4.3E-06 1.5E-10 72.5 15.0 127 336-464 15-145 (166)
125 4gco_A Protein STI-1; structur 98.5 1.8E-06 6.2E-11 71.4 11.9 106 336-443 15-122 (126)
126 4gco_A Protein STI-1; structur 98.4 1.4E-06 4.7E-11 72.2 11.1 101 366-466 8-111 (126)
127 1na0_A Designed protein CTPR3; 98.4 5.2E-06 1.8E-10 67.7 14.2 114 335-450 10-125 (125)
128 1p5q_A FKBP52, FK506-binding p 98.4 1.8E-06 6E-11 85.2 11.9 94 370-463 196-292 (336)
129 2vyi_A SGTA protein; chaperone 98.4 5.6E-06 1.9E-10 68.2 13.3 116 335-452 13-130 (131)
130 2lni_A Stress-induced-phosphop 98.4 5.5E-06 1.9E-10 68.6 13.0 115 335-451 17-133 (133)
131 2qfc_A PLCR protein; TPR, HTH, 98.3 1.6E-05 5.5E-10 76.6 17.3 164 268-431 75-266 (293)
132 2c2l_A CHIP, carboxy terminus 98.3 9.9E-07 3.4E-11 84.6 8.4 190 268-465 4-199 (281)
133 4f3v_A ESX-1 secretion system 98.3 3.5E-06 1.2E-10 79.2 11.6 131 305-440 108-245 (282)
134 3u3w_A Transcriptional activat 98.3 5.9E-05 2E-09 72.6 20.6 92 203-294 81-181 (293)
135 3gw4_A Uncharacterized protein 98.3 4E-06 1.4E-10 75.5 11.0 46 179-224 5-53 (203)
136 3upv_A Heat shock protein STI1 98.3 6.9E-06 2.4E-10 67.7 11.5 96 371-466 5-102 (126)
137 1hxi_A PEX5, peroxisome target 98.3 2.9E-06 9.8E-11 69.6 8.9 95 372-466 19-115 (121)
138 2e2e_A Formate-dependent nitri 98.3 3.7E-06 1.3E-10 74.1 10.3 119 346-466 22-145 (177)
139 3q49_B STIP1 homology and U bo 98.2 1.5E-05 5.2E-10 66.5 12.7 99 368-466 7-107 (137)
140 2kck_A TPR repeat; tetratricop 98.2 7.5E-06 2.6E-10 65.3 10.1 97 370-466 6-107 (112)
141 3sz7_A HSC70 cochaperone (SGT) 98.2 6.8E-06 2.3E-10 71.4 10.5 96 370-465 11-108 (164)
142 1na0_A Designed protein CTPR3; 98.2 1.6E-05 5.5E-10 64.7 12.3 97 370-466 9-107 (125)
143 3gw4_A Uncharacterized protein 98.2 1.1E-05 3.8E-10 72.5 12.1 62 300-361 27-93 (203)
144 2lni_A Stress-induced-phosphop 98.2 1.5E-05 5.1E-10 65.9 11.9 99 368-466 14-114 (133)
145 1elw_A TPR1-domain of HOP; HOP 98.2 1.8E-05 6E-10 63.7 12.0 95 371-465 5-101 (118)
146 4f3v_A ESX-1 secretion system 98.2 8.3E-06 2.8E-10 76.6 10.8 182 280-466 18-238 (282)
147 2dba_A Smooth muscle cell asso 98.2 2.5E-05 8.4E-10 66.0 13.0 97 369-465 27-128 (148)
148 2c2l_A CHIP, carboxy terminus 98.2 8.8E-06 3E-10 77.9 11.2 47 347-396 148-196 (281)
149 2fbn_A 70 kDa peptidylprolyl i 98.2 1.4E-05 4.9E-10 71.8 11.9 170 276-466 12-187 (198)
150 1a17_A Serine/threonine protei 98.2 2.7E-05 9.3E-10 67.3 13.4 91 199-292 15-105 (166)
151 3gyz_A Chaperone protein IPGC; 98.1 9.2E-06 3.2E-10 69.4 9.5 28 198-225 37-64 (151)
152 2vgx_A Chaperone SYCD; alterna 98.1 8.9E-06 3E-10 69.4 9.4 108 330-439 16-126 (148)
153 2e2e_A Formate-dependent nitri 98.1 1.6E-05 5.6E-10 69.9 11.2 127 310-439 21-152 (177)
154 1elw_A TPR1-domain of HOP; HOP 98.1 4.6E-05 1.6E-09 61.2 13.0 109 335-445 5-115 (118)
155 3q7a_A Farnesyltransferase alp 98.1 0.00077 2.6E-08 65.4 23.5 174 205-385 62-257 (349)
156 2dba_A Smooth muscle cell asso 98.1 6.3E-05 2.1E-09 63.4 14.1 110 334-446 28-143 (148)
157 4gcn_A Protein STI-1; structur 98.1 1.1E-05 3.9E-10 66.6 8.9 93 372-464 10-111 (127)
158 3dss_A Geranylgeranyl transfer 98.1 0.00056 1.9E-08 66.1 21.8 193 249-446 90-319 (331)
159 2vyi_A SGTA protein; chaperone 98.1 3.6E-05 1.2E-09 63.2 11.8 98 369-466 11-110 (131)
160 2xcb_A PCRH, regulatory protei 98.1 2E-05 6.8E-10 66.6 10.4 105 336-442 20-126 (142)
161 3sz7_A HSC70 cochaperone (SGT) 98.1 3.5E-05 1.2E-09 66.8 12.1 108 334-443 11-120 (164)
162 3upv_A Heat shock protein STI1 98.1 2.8E-05 9.7E-10 63.9 10.9 108 336-445 6-121 (126)
163 3q7a_A Farnesyltransferase alp 98.1 0.0018 6.1E-08 62.9 25.1 174 104-283 62-257 (349)
164 3rkv_A Putative peptidylprolyl 98.0 6E-05 2E-09 65.1 12.4 64 402-465 63-126 (162)
165 4b4t_Q 26S proteasome regulato 98.0 8.2E-05 2.8E-09 75.9 15.2 163 302-464 58-244 (434)
166 2hr2_A Hypothetical protein; a 98.0 3.2E-05 1.1E-09 65.6 9.9 62 404-465 59-131 (159)
167 2xev_A YBGF; tetratricopeptide 98.0 3.6E-05 1.2E-09 63.4 10.3 90 376-465 8-105 (129)
168 3k9i_A BH0479 protein; putativ 98.0 8.3E-06 2.8E-10 66.3 5.7 83 383-465 3-90 (117)
169 3q49_B STIP1 homology and U bo 98.0 5.6E-05 1.9E-09 63.0 10.9 100 333-434 8-109 (137)
170 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 7.3E-05 2.5E-09 76.9 13.5 95 370-464 317-414 (457)
171 1elr_A TPR2A-domain of HOP; HO 97.9 5E-05 1.7E-09 62.3 9.9 95 371-465 5-108 (131)
172 1wao_1 Serine/threonine protei 97.9 2.4E-05 8.1E-10 81.0 9.5 116 343-460 15-134 (477)
173 1wao_1 Serine/threonine protei 97.9 9E-05 3.1E-09 76.6 13.8 119 272-394 10-134 (477)
174 2kck_A TPR repeat; tetratricop 97.9 7.5E-05 2.6E-09 59.3 10.3 98 337-436 9-111 (112)
175 2fbn_A 70 kDa peptidylprolyl i 97.9 1.3E-05 4.5E-10 72.0 6.2 160 172-354 10-176 (198)
176 3ro3_A PINS homolog, G-protein 97.9 0.00012 4.3E-09 62.4 12.2 93 372-464 51-157 (164)
177 1elr_A TPR2A-domain of HOP; HO 97.9 6.2E-05 2.1E-09 61.7 9.7 107 337-446 7-122 (131)
178 1p5q_A FKBP52, FK506-binding p 97.9 0.00021 7.1E-09 70.2 14.9 119 132-252 148-283 (336)
179 4gcn_A Protein STI-1; structur 97.8 0.00022 7.4E-09 58.7 11.8 97 135-235 12-118 (127)
180 3n71_A Histone lysine methyltr 97.8 0.00025 8.5E-09 73.0 14.6 124 343-466 318-465 (490)
181 3ro3_A PINS homolog, G-protein 97.8 0.00013 4.6E-09 62.2 10.8 97 336-432 51-159 (164)
182 3dss_A Geranylgeranyl transfer 97.8 0.0032 1.1E-07 60.8 21.3 180 284-466 90-305 (331)
183 1ihg_A Cyclophilin 40; ppiase 97.8 0.00013 4.3E-09 72.7 11.9 135 301-457 225-362 (370)
184 2xev_A YBGF; tetratricopeptide 97.8 0.00038 1.3E-08 57.0 12.9 99 341-439 9-113 (129)
185 1hxi_A PEX5, peroxisome target 97.8 8.5E-05 2.9E-09 60.6 8.5 94 340-435 23-118 (121)
186 2hr2_A Hypothetical protein; a 97.7 6.9E-05 2.3E-09 63.6 7.7 69 372-440 59-140 (159)
187 4b4t_Q 26S proteasome regulato 97.7 0.0006 2.1E-08 69.3 16.2 157 308-464 13-203 (434)
188 2if4_A ATFKBP42; FKBP-like, al 97.7 4E-05 1.4E-09 75.4 6.3 147 300-466 180-329 (338)
189 3k9i_A BH0479 protein; putativ 97.7 3.6E-05 1.2E-09 62.4 5.0 91 347-438 3-97 (117)
190 3rkv_A Putative peptidylprolyl 97.7 0.00014 4.7E-09 62.8 8.7 67 370-436 63-131 (162)
191 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00014 4.6E-09 71.6 9.0 152 268-436 179-333 (338)
192 3ma5_A Tetratricopeptide repea 97.6 0.00032 1.1E-08 54.9 9.4 65 401-465 6-70 (100)
193 2kat_A Uncharacterized protein 97.6 0.00019 6.6E-09 57.7 7.8 78 388-465 3-82 (115)
194 2l6j_A TPR repeat-containing p 97.5 0.0002 6.8E-09 56.9 7.4 91 369-459 3-101 (111)
195 1ihg_A Cyclophilin 40; ppiase 97.5 0.00056 1.9E-08 68.0 12.1 114 334-466 223-337 (370)
196 1na3_A Designed protein CTPR2; 97.5 0.00054 1.9E-08 51.9 9.5 81 370-450 9-91 (91)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.00046 1.6E-08 70.9 10.5 65 402-466 317-381 (457)
198 1dce_A Protein (RAB geranylger 97.4 0.0037 1.2E-07 65.8 17.5 168 284-454 45-244 (567)
199 1zu2_A Mitochondrial import re 97.4 0.00011 3.8E-09 62.1 4.2 86 381-466 13-121 (158)
200 3bee_A Putative YFRE protein; 97.2 0.0024 8.1E-08 49.0 9.8 68 400-467 4-74 (93)
201 2l6j_A TPR repeat-containing p 97.2 0.0012 4.1E-08 52.2 8.5 66 401-466 3-68 (111)
202 3n71_A Histone lysine methyltr 97.2 0.0028 9.7E-08 65.1 13.0 124 308-431 318-464 (490)
203 3qwp_A SET and MYND domain-con 97.2 0.0013 4.6E-08 66.4 10.0 116 377-510 294-427 (429)
204 1klx_A Cysteine rich protein B 97.0 0.0069 2.4E-07 50.4 11.7 63 402-466 57-127 (138)
205 1klx_A Cysteine rich protein B 97.0 0.0068 2.3E-07 50.4 11.3 108 212-328 10-126 (138)
206 1na3_A Designed protein CTPR2; 97.0 0.003 1E-07 47.6 8.3 65 402-466 9-73 (91)
207 3qww_A SET and MYND domain-con 96.8 0.0014 4.8E-08 66.2 6.5 82 383-464 311-410 (433)
208 2kat_A Uncharacterized protein 96.8 0.0047 1.6E-07 49.3 8.3 80 353-434 4-85 (115)
209 1dce_A Protein (RAB geranylger 96.8 0.056 1.9E-06 56.8 18.6 171 110-286 43-244 (567)
210 1zu2_A Mitochondrial import re 96.7 0.0013 4.4E-08 55.6 4.3 51 386-436 62-125 (158)
211 3qww_A SET and MYND domain-con 96.7 0.01 3.4E-07 59.9 11.7 93 346-438 310-423 (433)
212 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.2E-06 56.9 21.6 167 104-324 607-774 (814)
213 1pc2_A Mitochondria fission pr 96.6 0.016 5.4E-07 48.4 10.4 91 400-516 30-125 (152)
214 3qwp_A SET and MYND domain-con 96.6 0.018 6E-07 58.2 12.8 100 341-440 294-414 (429)
215 3ma5_A Tetratricopeptide repea 96.6 0.0035 1.2E-07 48.7 6.0 66 369-434 6-73 (100)
216 1wy6_A Hypothetical protein ST 96.5 0.24 8.3E-06 39.8 16.1 140 310-468 18-157 (172)
217 2kc7_A BFR218_protein; tetratr 96.5 0.0071 2.4E-07 46.5 7.1 53 412-464 10-63 (99)
218 2kc7_A BFR218_protein; tetratr 96.4 0.022 7.5E-07 43.6 9.4 64 376-439 6-72 (99)
219 3ly7_A Transcriptional activat 96.3 0.058 2E-06 52.3 13.6 36 297-334 192-232 (372)
220 3mkq_A Coatomer beta'-subunit; 96.1 0.089 3E-06 58.0 16.0 45 279-325 663-707 (814)
221 1qsa_A Protein (soluble lytic 95.9 1.4 4.7E-05 46.4 23.0 252 167-430 73-347 (618)
222 3u64_A Protein TP_0956; tetrat 95.6 0.046 1.6E-06 50.9 8.9 87 386-472 179-276 (301)
223 3ly7_A Transcriptional activat 95.4 0.14 4.7E-06 49.7 11.8 133 128-264 191-341 (372)
224 3lvg_A Clathrin heavy chain 1; 95.4 0.0013 4.4E-08 65.2 -2.3 223 79-319 39-324 (624)
225 3bee_A Putative YFRE protein; 95.3 0.082 2.8E-06 40.2 8.3 67 368-434 4-75 (93)
226 3mkq_B Coatomer subunit alpha; 95.3 1.1 3.6E-05 38.3 15.8 102 175-294 14-115 (177)
227 2v5f_A Prolyl 4-hydroxylase su 95.0 0.15 5.3E-06 39.5 9.3 70 371-440 6-84 (104)
228 3mkq_B Coatomer subunit alpha; 94.6 1 3.5E-05 38.4 13.8 125 77-223 17-141 (177)
229 1nzn_A CGI-135 protein, fissio 94.0 0.37 1.2E-05 38.6 9.2 44 421-464 57-102 (126)
230 1wy6_A Hypothetical protein ST 93.8 2.2 7.4E-05 34.4 13.0 85 178-265 73-157 (172)
231 3lvg_A Clathrin heavy chain 1; 93.5 2.2E-05 7.5E-10 77.4 -19.3 220 167-415 55-276 (624)
232 1pc2_A Mitochondria fission pr 93.5 0.35 1.2E-05 40.2 8.5 71 368-438 30-107 (152)
233 1y8m_A FIS1; mitochondria, unk 93.0 3.1 0.00011 33.9 13.8 90 400-515 37-130 (144)
234 3u64_A Protein TP_0956; tetrat 92.8 1.8 6.3E-05 40.2 13.1 50 282-331 218-272 (301)
235 4h7y_A Dual specificity protei 92.3 0.59 2E-05 38.5 8.0 56 414-469 72-127 (161)
236 4gns_B Protein CSD3, chitin bi 92.3 1.2 4E-05 47.9 12.7 54 410-463 345-398 (754)
237 2v5f_A Prolyl 4-hydroxylase su 91.8 0.85 2.9E-05 35.1 8.5 64 402-465 5-75 (104)
238 2p58_C Putative type III secre 90.4 2.5 8.5E-05 31.8 8.9 87 145-237 21-107 (116)
239 2uwj_G Type III export protein 90.1 2.3 7.9E-05 31.9 8.5 88 145-238 20-107 (115)
240 4h7y_A Dual specificity protei 89.6 3.6 0.00012 33.9 10.2 94 194-290 10-116 (161)
241 1nzn_A CGI-135 protein, fissio 88.5 3.8 0.00013 32.7 9.5 72 368-439 33-111 (126)
242 3o48_A Mitochondria fission 1 85.9 1.9 6.4E-05 34.7 6.3 48 417-464 58-106 (134)
243 2wpv_A GET4, UPF0363 protein Y 85.4 25 0.00085 33.1 21.4 168 168-362 35-216 (312)
244 2ff4_A Probable regulatory pro 85.0 2.6 9E-05 41.5 8.6 69 404-472 173-246 (388)
245 1v54_E Cytochrome C oxidase po 84.8 6.3 0.00021 29.8 8.2 64 314-379 25-88 (109)
246 3ffl_A Anaphase-promoting comp 83.2 7.1 0.00024 32.7 9.0 25 336-360 65-89 (167)
247 4ady_A RPN2, 26S proteasome re 83.0 60 0.0021 35.7 24.1 40 82-124 219-258 (963)
248 4fhn_B Nucleoporin NUP120; pro 83.0 44 0.0015 38.1 18.7 118 239-361 818-965 (1139)
249 4b4t_P 26S proteasome regulato 82.6 26 0.00088 35.1 14.9 164 135-298 141-325 (445)
250 2wpv_A GET4, UPF0363 protein Y 82.4 33 0.0011 32.3 18.0 170 268-464 33-216 (312)
251 4fhn_B Nucleoporin NUP120; pro 81.2 18 0.00062 41.3 14.7 163 171-352 817-989 (1139)
252 4b4t_P 26S proteasome regulato 80.9 48 0.0016 33.1 17.2 94 303-396 141-244 (445)
253 1v54_E Cytochrome C oxidase po 80.7 11 0.00037 28.6 8.1 48 396-443 39-86 (109)
254 2ff4_A Probable regulatory pro 79.5 12 0.00041 36.8 10.9 67 305-372 177-247 (388)
255 3esl_A Checkpoint serine/threo 79.3 31 0.0011 29.9 13.8 101 389-515 63-169 (202)
256 3txn_A 26S proteasome regulato 77.9 51 0.0018 32.2 14.7 158 271-429 22-208 (394)
257 2y69_E Cytochrome C oxidase su 77.1 14 0.00048 29.6 8.2 63 314-378 68-130 (152)
258 4gns_B Protein CSD3, chitin bi 76.7 41 0.0014 36.1 14.5 53 397-450 608-660 (754)
259 2p58_C Putative type III secre 76.2 17 0.00059 27.3 8.0 78 248-329 22-99 (116)
260 2uwj_G Type III export protein 76.0 16 0.00054 27.5 7.7 85 248-337 21-105 (115)
261 1wdy_A 2-5A-dependent ribonucl 76.0 35 0.0012 30.9 12.8 46 247-292 193-240 (285)
262 3lpz_A GET4 (YOR164C homolog); 75.3 57 0.0019 30.9 21.8 169 269-464 36-215 (336)
263 1zbp_A Hypothetical protein VP 74.0 7.3 0.00025 35.6 6.8 57 378-434 5-63 (273)
264 3ffl_A Anaphase-promoting comp 74.0 38 0.0013 28.3 10.7 30 165-194 121-150 (167)
265 3mv2_A Coatomer subunit alpha; 73.7 47 0.0016 31.2 12.3 59 394-466 197-257 (325)
266 3kea_A K1L; tropism, ANK repea 67.7 33 0.0011 31.6 10.4 14 77-90 40-53 (285)
267 1zbp_A Hypothetical protein VP 67.7 74 0.0025 29.0 12.1 52 309-361 7-58 (273)
268 1n11_A Ankyrin; clathrin, BAND 66.4 46 0.0016 32.8 12.0 16 77-92 23-38 (437)
269 2qx5_A Nucleoporin NIC96; mRNA 66.4 1.1E+02 0.0039 32.1 14.9 32 370-401 533-569 (661)
270 2y69_E Cytochrome C oxidase su 65.0 53 0.0018 26.4 9.5 49 395-443 81-129 (152)
271 3lpz_A GET4 (YOR164C homolog); 60.0 1.2E+02 0.004 28.8 25.1 167 169-362 38-215 (336)
272 3ltm_A Alpha-REP4; protein eng 59.2 86 0.0029 26.9 16.5 155 81-248 18-172 (211)
273 4a1g_A Mitotic checkpoint seri 58.8 68 0.0023 26.4 9.2 77 387-469 52-134 (152)
274 1k1a_A B-cell lymphoma 3-encod 57.4 64 0.0022 28.3 10.1 87 103-193 13-103 (241)
275 1k1a_A B-cell lymphoma 3-encod 57.0 80 0.0027 27.6 10.7 84 138-222 13-101 (241)
276 1wdy_A 2-5A-dependent ribonucl 54.8 71 0.0024 28.8 10.2 16 175-190 45-60 (285)
277 2wvi_A Mitotic checkpoint seri 54.7 92 0.0032 25.9 9.5 76 388-469 48-129 (164)
278 4b4t_R RPN7, 26S proteasome re 53.6 98 0.0034 30.6 11.5 96 301-396 133-234 (429)
279 3o48_A Mitochondria fission 1 52.9 87 0.003 25.0 9.5 32 405-436 81-112 (134)
280 3eiq_C Programmed cell death p 52.6 48 0.0016 31.8 8.5 64 271-334 220-288 (358)
281 4b4t_R RPN7, 26S proteasome re 51.4 50 0.0017 32.7 8.9 61 98-158 133-195 (429)
282 1y8m_A FIS1; mitochondria, unk 49.7 1E+02 0.0035 25.0 11.2 34 404-437 79-112 (144)
283 3ltj_A Alpharep-4; protein eng 49.1 1.2E+02 0.0042 25.6 19.4 17 232-248 89-105 (201)
284 3mkr_B Coatomer subunit alpha; 48.3 73 0.0025 29.9 8.6 61 393-467 187-249 (320)
285 2nsz_A Programmed cell death p 47.0 1E+02 0.0034 24.5 8.4 59 169-227 10-73 (129)
286 2l0z_A Glycoprotein G2; zinc-b 45.4 6.2 0.00021 23.7 0.6 23 582-604 6-29 (42)
287 4ady_A RPN2, 26S proteasome re 43.7 3.7E+02 0.013 29.6 23.1 297 100-405 343-664 (963)
288 3eu9_A Huntingtin-interacting 42.2 71 0.0024 27.8 7.8 14 77-90 18-31 (240)
289 2pk8_A Uncharacterized protein 41.6 10 0.00035 27.7 1.4 30 493-522 13-42 (103)
290 2qx5_A Nucleoporin NIC96; mRNA 41.5 1.6E+02 0.0055 31.0 11.0 20 447-469 549-568 (661)
291 3esl_A Checkpoint serine/threo 41.5 1.6E+02 0.0054 25.5 9.1 53 112-164 95-148 (202)
292 3ltm_A Alpha-REP4; protein eng 41.0 1.7E+02 0.0058 24.9 19.1 16 165-180 63-78 (211)
293 3kea_A K1L; tropism, ANK repea 40.0 1E+02 0.0034 28.2 8.6 92 376-471 132-223 (285)
294 4b4t_S RPN3, 26S proteasome re 40.0 2.1E+02 0.0074 28.9 11.2 182 268-467 231-431 (523)
295 3eu9_A Huntingtin-interacting 39.2 94 0.0032 27.0 8.1 78 106-191 16-98 (240)
296 2ion_A PDCD4, programmed cell 38.4 92 0.0032 25.6 7.0 59 169-227 12-75 (152)
297 2d2s_A Exocyst complex compone 37.3 1.5E+02 0.0053 26.3 8.9 86 102-190 24-115 (235)
298 3hra_A Ankyrin repeat family p 34.9 1.2E+02 0.004 25.5 7.8 16 77-92 14-29 (201)
299 3jxi_A Vanilloid receptor-rela 34.8 45 0.0015 29.9 5.2 89 104-192 10-116 (260)
300 3txn_A 26S proteasome regulato 34.3 3.3E+02 0.011 26.4 26.0 89 367-468 253-346 (394)
301 2nsz_A Programmed cell death p 34.3 84 0.0029 24.9 6.0 62 271-332 10-76 (129)
302 3ygs_P Procaspase 9; apoptosis 33.9 41 0.0014 25.2 3.8 38 79-116 51-88 (97)
303 3ltj_A Alpharep-4; protein eng 33.8 2.1E+02 0.0073 24.0 19.5 157 80-249 12-168 (201)
304 4aez_C MAD3, mitotic spindle c 33.1 65 0.0022 28.4 5.4 78 386-469 100-183 (223)
305 3qye_A TBC1 domain family memb 31.9 3E+02 0.01 25.8 10.7 140 100-247 153-308 (331)
306 2d2s_A Exocyst complex compone 31.7 1.4E+02 0.0047 26.6 7.6 87 306-396 25-117 (235)
307 1oai_A Nuclear RNA export fact 31.5 28 0.00095 23.3 2.2 25 210-234 33-57 (59)
308 3hra_A Ankyrin repeat family p 31.2 1.4E+02 0.0049 25.0 7.7 152 106-267 12-172 (201)
309 3ljn_A Hypothetical protein; a 30.2 1.1E+02 0.0037 29.1 7.4 14 279-292 181-194 (364)
310 3b7b_A Euchromatic histone-lys 29.2 1.4E+02 0.0048 25.9 7.5 201 116-328 24-236 (237)
311 2p1h_A APAF-1, apoptotic prote 28.7 1.1E+02 0.0038 22.4 5.5 63 47-115 24-86 (94)
312 2pnn_A Transient receptor pote 27.9 1E+02 0.0035 27.7 6.4 97 95-193 10-125 (273)
313 2fe3_A Peroxide operon regulat 27.4 1.3E+02 0.0046 24.2 6.3 59 122-181 13-71 (145)
314 3bqo_A Telomeric repeat-bindin 27.1 2.8E+02 0.0096 23.8 8.0 53 386-438 94-153 (211)
315 3eiq_C Programmed cell death p 26.9 4.2E+02 0.014 25.3 11.3 59 302-361 220-280 (358)
316 2ion_A PDCD4, programmed cell 26.5 78 0.0027 26.0 4.6 61 271-331 12-77 (152)
317 2k0q_A Putative uncharacterize 26.5 17 0.00059 25.0 0.5 24 580-603 7-30 (74)
318 1ug3_A EIF4GI, eukaryotic prot 26.2 4.1E+02 0.014 25.0 10.8 25 171-195 16-40 (339)
319 1bpo_A Protein (clathrin); cla 26.2 2.6E+02 0.0088 27.8 8.8 162 21-196 321-486 (494)
320 3ygs_P Procaspase 9; apoptosis 24.4 95 0.0032 23.1 4.4 38 180-217 51-88 (97)
321 2lo3_A SAGA-associated factor 24.2 21 0.0007 21.7 0.4 12 561-572 16-27 (44)
322 4a1g_A Mitotic checkpoint seri 23.8 3E+02 0.01 22.5 8.9 55 113-167 82-137 (152)
323 3jxi_A Vanilloid receptor-rela 23.0 1.6E+02 0.0054 26.1 6.7 56 204-260 9-73 (260)
324 1qsa_A Protein (soluble lytic 22.9 6.5E+02 0.022 26.1 31.4 367 77-469 84-483 (618)
325 1mzb_A Ferric uptake regulatio 22.8 2.2E+02 0.0075 22.5 6.7 59 122-181 9-68 (136)
326 2rfa_A Transient receptor pote 22.4 2.6E+02 0.0089 24.0 7.9 171 77-258 12-219 (232)
327 2wvi_A Mitotic checkpoint seri 22.0 3.4E+02 0.012 22.5 8.3 56 113-168 77-133 (164)
328 3aji_A 26S proteasome non-ATPa 22.0 1.7E+02 0.0058 25.2 6.6 12 322-333 188-199 (231)
329 2xig_A Ferric uptake regulatio 21.9 1.8E+02 0.0063 23.5 6.1 61 121-182 17-77 (150)
330 2p1h_A APAF-1, apoptotic prote 21.7 2.4E+02 0.0081 20.5 7.5 63 150-216 24-86 (94)
331 1oyz_A Hypothetical protein YI 20.8 4.5E+02 0.015 23.4 22.0 17 369-385 205-221 (280)
332 4ets_A Ferric uptake regulatio 20.8 1.6E+02 0.0056 24.3 5.6 69 113-182 14-85 (162)
333 3ljn_A Hypothetical protein; a 20.4 2.6E+02 0.0088 26.3 7.9 81 379-461 179-266 (364)
334 4gq2_M Nucleoporin NUP120; bet 20.3 6.2E+02 0.021 27.9 11.8 121 172-313 816-950 (950)
335 2fe3_A Peroxide operon regulat 20.1 3.1E+02 0.011 21.9 7.1 41 203-244 27-67 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-37 Score=332.96 Aligned_cols=423 Identities=10% Similarity=-0.012 Sum_probs=370.6
Q ss_pred hHHHHHHHhc---cChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhc--CCCCcccHHHHHHH
Q 007396 32 QECLTILKTC---KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQI--DEPGAFDFNTLIRG 105 (605)
Q Consensus 32 ~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~--~~~~~~~~~~li~~ 105 (605)
..+..++..+ ++.+.|..++..+++. .|+...+..+. ..| +.|++++|..+|+++ ..++..+|+.++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLA---QVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHH---HHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHH---HHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 3445555543 4578899999998854 46777788888 999 999999999999999 45889999999999
Q ss_pred HHhCCCchHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH-
Q 007396 106 FVKEVEFEEALFLYNEMFER---------------GVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQ- 169 (605)
Q Consensus 106 ~~~~g~~~~A~~l~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~- 169 (605)
|.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+++.+.++. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953221 22335779999999999999999999999999988643 33333
Q ss_pred -------------------------------------HHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHC
Q 007396 170 -------------------------------------NSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIAAHASN 210 (605)
Q Consensus 170 -------------------------------------~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 210 (605)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 3336677789999999999999987 7899999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 319 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999865 5578899999999999999999999999999765 55788999999999999999999999
Q ss_pred HhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 007396 291 FRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIV 367 (605)
Q Consensus 291 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 367 (605)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..++..++.+|.+.|++++|.++|+++.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 99875 3467899999999999999999999999999853 347789999999999999999999999999853 23
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 368 PTVQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|+..++++.+.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 46889999999999999999999999988 45787 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|..++.+|.+.|++++|.+.++++.+.+
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-36 Score=328.00 Aligned_cols=415 Identities=8% Similarity=-0.051 Sum_probs=337.5
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 152 (605)
..+ +.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|.+.|++++|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 556 889999999999999999999999999999999999999999999985 46888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------------------ChhHHHHHHHHHHHCCCh
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK-------------------SVASWSAIIAAHASNGLW 213 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------------------~~~~~~~li~~~~~~g~~ 213 (605)
+|+.+... .++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988644 678999999999999999999999999965433 378999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCChhHHHH--------------------------------------HHHHHhccCChhhHHHH
Q 007396 214 SECLKLFGEMNNEKCWRPEESILVS--------------------------------------VLSACTHLGALDLGKCT 255 (605)
Q Consensus 214 ~~A~~~~~~m~~~g~~~p~~~t~~~--------------------------------------ll~a~~~~~~~~~a~~~ 255 (605)
++|+++|++|.+.+ +.+...+.. ++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998854 223333222 24556678899999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007396 256 HGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP 332 (605)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (605)
++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|..++++|.+. ...
T Consensus 295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 371 (597)
T 2xpi_A 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE 371 (597)
T ss_dssp HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence 9998876 5789999999999999999999999999886 346789999999999999999999999999864 344
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLS 410 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 410 (605)
+..++..+...|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 6789999999999999999999999999842 2345789999999999999999999999998 3344 6789999999
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCC-ccceEEECCEEEEE
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK----GLNQSP-GFSLVEVARKVYKF 485 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~s~~~~~~~~~~~ 485 (605)
+|...|++++|++.|+++.+..|.++.+|..++.+|.+.|++++|.++++++.+. +..|.. ...|. .+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~-------~l 522 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA-------NL 522 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH-------HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH-------HH
Confidence 9999999999999999999999999999999999999999999999999999875 434321 11221 11
Q ss_pred EecCCCCcchHHHHHHHHHHH
Q 007396 486 VSQDRSHPAWDNIYEMIHQME 506 (605)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~l~ 506 (605)
...+..+++.+++.+.++++.
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 223455778888888776543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=256.07 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC---------hhhHHHHHHHHHHhcCCchHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA---------LDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 269 (605)
.++.+|.+|++.|++++|+++|++|.+.| ++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46667777777777777777777777777 77777777777777765543 456777777777777777777
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 007396 270 VETSLIDMYVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS 345 (605)
Q Consensus 270 ~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 345 (605)
+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 77777777777777777777777775 45677777777777777778888888888888888888888888888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR 382 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 382 (605)
+.|++++|.++|++|. +.+..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888887 46777888888877777764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3e-28 Score=253.82 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=175.1
Q ss_pred HHHHHhhcCCC-----CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC---------hHH
Q 007396 84 ACSIFRQIDEP-----GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA---------LKE 149 (605)
Q Consensus 84 A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~ 149 (605)
+..++.++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44445555432 2235889999999999999999999999999999999999999999987654 688
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD----QKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997 47999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 226 EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
.| +.||..||+++|.+|++.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 169 ~G-~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SE-VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TT-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cC-CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99 99999999999999999999999999999999999999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.2e-26 Score=231.02 Aligned_cols=368 Identities=11% Similarity=0.047 Sum_probs=275.9
Q ss_pred Ccc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKE 149 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 149 (605)
..+ +.|++++|.+.|+++.+ | +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344 77888888888877643 3 34455666677777888888888888777653 3455678888888888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--K-SVASWSAIIAAHASNGLWSECLKLFGEMNNE 226 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (605)
|...++.+++..+. +...+..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++...
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888888776532 456777888888888888888888877652 3 3456777777788888888888888888774
Q ss_pred CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHH
Q 007396 227 KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYS 303 (605)
Q Consensus 227 g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~ 303 (605)
. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++.. ..+..+|.
T Consensus 165 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 3 3456777778888888888888888888888765 3356677778888888888888888887654 33466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR 382 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 382 (605)
.+...|...|++++|+..|+++.+. .| +..++..+..++...|++++|...|+.+.+. .+.+...+..+...+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8888888888888888888888774 34 3567777888888888888888888888742 34567778888888888
Q ss_pred cCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 383 AGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
.|++++|.+.++++ ...|+ ..+|..+..++...|++++|...++++.+..|+++..|..++..|...|
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 88888888888876 44454 5578888888888888888888888888888888888888887776665
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.3e-24 Score=221.58 Aligned_cols=354 Identities=13% Similarity=0.079 Sum_probs=307.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDN-FTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (605)
+...+.+.|++++|+..++++.+. .|+. ..+..+...+...|++++|...++..++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677889999999999999875 4554 456666677788999999999999998876 347889999999999999
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 181 KVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 181 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
++++|.+.|+++.+ .+..+|..+...+.+.|++++|++.|+++.... +.+...+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998752 356689999999999999999999999998853 3345566777888889999999999999
Q ss_pred HHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C
Q 007396 258 SLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-D 333 (605)
Q Consensus 258 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 333 (605)
.+.+.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .| +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999875 4467889999999999999999999999876 334567888999999999999999999999874 45 4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVVWRSLLSA 411 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a 411 (605)
..++..+..++...|++++|...|+.+... -+.+...|..+...|.+.|++++|.+.|+++ .. +++..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 678889999999999999999999999842 2335778999999999999999999999998 33 3466799999999
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999874
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.5e-22 Score=209.28 Aligned_cols=385 Identities=8% Similarity=-0.082 Sum_probs=302.3
Q ss_pred Ccc-CCCChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
..| +.|++++|...|+++.. |+...|..+...+.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 556 88899999998888754 788888888888888899999999998888764 23445788888888888999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHH--------------------------------------hc
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFK--------------------------------------QM 192 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~--------------------------------------~m 192 (605)
...++.+.+.+.. +......++..+.+......+.+.+. ..
T Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 9999888887643 33333344443333222222222211 11
Q ss_pred C---------CC-ChhHHHHHHHHHHH---CCChhHHHHHHHHHHh-----CCCCCC--------ChhHHHHHHHHHhcc
Q 007396 193 D---------QK-SVASWSAIIAAHAS---NGLWSECLKLFGEMNN-----EKCWRP--------EESILVSVLSACTHL 246 (605)
Q Consensus 193 ~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~~p--------~~~t~~~ll~a~~~~ 246 (605)
. .+ +...|......+.. .|++++|+..|+++.. .. -.| +..++..+...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD-KNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc-cCccccccChHHHHHHHHHHHHHHHC
Confidence 0 01 13344444444554 8999999999999987 32 122 245677788888999
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFS 323 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (605)
|+++.|...++.+.+.... ...+..+...|...|++++|...|+++.. .+...|..+...|...|++++|...|+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999988755 88899999999999999999999998753 356788999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCC
Q 007396 324 EMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQ 399 (605)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 399 (605)
++.+... .+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..
T Consensus 329 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 329 KAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 9988532 24567888889999999999999999999853 2335678899999999999999999999887 222
Q ss_pred CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 400 QN----DVVWRSLLSASKV---HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 400 p~----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++ ...|..+...+.. .|++++|...++++.+..|.++..+..++.+|...|++++|.+.+++..+.+
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 32 3488899999999 9999999999999999999999999999999999999999999999998754
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.8e-21 Score=200.88 Aligned_cols=298 Identities=11% Similarity=0.052 Sum_probs=203.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+.. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 45668888888888888888888888888753 345667888888888888888888888888888643 6778888888
Q ss_pred HHHcCCCHHHHHHHHHhcCCC---Ch---hHHHHHHH------------HHHHCCChhHHHHHHHHHHhCCCCCCChhHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQK---SV---ASWSAIIA------------AHASNGLWSECLKLFGEMNNEKCWRPEESIL 236 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~ 236 (605)
+|.+.|++++|.+.|+++.+. +. ..|..++. .+.+.|++++|+..|+++.... +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 888888888888888887643 23 55555543 3778888888888888887754 4566777
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC--CC-CeeeHHHH--------
Q 007396 237 VSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DK-CQLTYSVM-------- 305 (605)
Q Consensus 237 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~-~~~~~~~l-------- 305 (605)
..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++. .+ +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 777777788888888888888777664 3456677777777777777777777777664 22 22333333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007396 306 ----ISGLAMHGQGKEALSIFSEMLREGLEPD-----DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCV 376 (605)
Q Consensus 306 ----i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 376 (605)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+... .+.+...|..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 55566666666666666666552 333 234555555666666666666666665521 12245556666
Q ss_pred HHHHHhcCCHHHHHHHHHHC-CCCCC
Q 007396 377 VDLMGRAGMLGEALELIQSM-PIQQN 401 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m-~~~p~ 401 (605)
..+|.+.|++++|.+.++++ ...|+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 66666666666666666655 44443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.1e-21 Score=201.94 Aligned_cols=337 Identities=10% Similarity=0.036 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 114 EALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 114 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
.+...|.+..... +.+...+..+...+.+.|++++|..+|+.+++... .+..++..+..+|.+.|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 33556788889999999999999999999998854 478899999999999999999999999876
Q ss_pred C---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCCh----hHHHHH------------HHHHhccCChhhHHH
Q 007396 194 Q---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEE----SILVSV------------LSACTHLGALDLGKC 254 (605)
Q Consensus 194 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~----~t~~~l------------l~a~~~~~~~~~a~~ 254 (605)
+ .+..+|..+...|.+.|++++|...|+++... .|+. ..+..+ ...+...|+++.|..
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 45779999999999999999999999999885 4543 455444 344888999999999
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
.++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++... .
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 999999876 4578889999999999999999999999876 346789999999999999999999999999874 4
Q ss_pred CCHH-HHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHH
Q 007396 332 PDDV-VYVGV------------LSACSHAGLVNEGLLCFDRMKLEYRIVPT-----VQHYGCVVDLMGRAGMLGEALELI 393 (605)
Q Consensus 332 p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~ 393 (605)
|+.. .+..+ ...|.+.|++++|..+|+.+... .|+ ..+|..+...+.+.|++++|.+.+
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5443 33333 78899999999999999999853 344 458899999999999999999999
Q ss_pred HHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH------------HHHcC-----ChhH
Q 007396 394 QSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM------------YARAQ-----RWYD 454 (605)
Q Consensus 394 ~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~ 454 (605)
+++ ...| +...|..+..+|...|++++|...++++.+++|+++..+..+..+ |...| +.++
T Consensus 319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 987 4445 567999999999999999999999999999999999999888844 55555 4455
Q ss_pred HHHHHHH
Q 007396 455 VAKIRTE 461 (605)
Q Consensus 455 a~~~~~~ 461 (605)
+.+.+++
T Consensus 399 ~~~~y~~ 405 (450)
T 2y4t_A 399 IIKAYRK 405 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-21 Score=206.05 Aligned_cols=395 Identities=10% Similarity=-0.047 Sum_probs=310.0
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCc
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEF 112 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 112 (605)
.+-..++.+.|...+..+++.. |++..+..+. ..| +.|++++|...|+++.+ .+...|..+...+.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLS---ACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHH---HHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 3444567899999999999986 6788888888 899 99999999999998754 3556899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh--------------------------------
Q 007396 113 EEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKV-------------------------------- 160 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 160 (605)
++|+..|+++...+ +++......++..+........+.+.+..+.+.
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999999875 344445555555444333222222222111100
Q ss_pred ---CC---------CCchhHHHHHHHHHHc---CCCHHHHHHHHHhcCC----------------C-ChhHHHHHHHHHH
Q 007396 161 ---GF---------ECDLFVQNSLINMYGK---CEKVEFASAIFKQMDQ----------------K-SVASWSAIIAAHA 208 (605)
Q Consensus 161 ---g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~ 208 (605)
.. +.+...+..+...+.. .|++++|...|+++.+ + +..+|..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00 1113344444444444 8999999999988654 1 3457888999999
Q ss_pred HCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH
Q 007396 209 SNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL 288 (605)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 288 (605)
..|++++|+..|+++.... |+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|.
T Consensus 249 ~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999998854 448888889999999999999999999999876 446778999999999999999999
Q ss_pred HHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 007396 289 CLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYR 365 (605)
Q Consensus 289 ~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 365 (605)
..|++.. ..+...|..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+.+.....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 9999875 3356788999999999999999999999998752 22456788888999999999999999999875332
Q ss_pred CCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 366 IVPT----VQHYGCVVDLMGR---AGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 366 ~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
-.++ ...+..+...+.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+++|.++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 2233 4488999999999 99999999999987 3344 466888999999999999999999999999999877
Q ss_pred chHHHH
Q 007396 437 SDYVLL 442 (605)
Q Consensus 437 ~~~~~l 442 (605)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=5.9e-20 Score=195.48 Aligned_cols=379 Identities=10% Similarity=0.015 Sum_probs=268.6
Q ss_pred Ccc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKE 149 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 149 (605)
..| +.|++++|...|+++.. .+...|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 555 66677777776666543 345556666666666677777777777666643 2234456666666666677777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC----------------------------------
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK---------------------------------- 195 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------------------------- 195 (605)
|...++ .+... |+ ..+..+..+...+....|...++.+...
T Consensus 112 A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 766664 22221 11 1111222333333444455555444321
Q ss_pred ---Chh---HHHHHHHHHHH--------CCChhHHHHHHHHHHhCCCCCCC-h-------hHHHHHHHHHhccCChhhHH
Q 007396 196 ---SVA---SWSAIIAAHAS--------NGLWSECLKLFGEMNNEKCWRPE-E-------SILVSVLSACTHLGALDLGK 253 (605)
Q Consensus 196 ---~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~p~-~-------~t~~~ll~a~~~~~~~~~a~ 253 (605)
+.. .+..+...+.. .|++++|+.+|+++.+.. |+ . .++..+...+...|+++.|.
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 000 12222222211 247899999999998753 44 2 24666667788899999999
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
..+..+.+.... ...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|...|+++.+...
T Consensus 264 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 264 VLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 999999987644 7788889999999999999999999875 34567899999999999999999999999988532
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCC----CH
Q 007396 331 EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQ----ND 402 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~ 402 (605)
.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..+ ..
T Consensus 342 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 342 -ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp -TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 23567888899999999999999999999853 2345678899999999999999999999886 1111 22
Q ss_pred HHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 403 VVWRSLLSASKVH----------HNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 403 ~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+..+...+... |++++|...++++.+.+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2344555667777 999999999999999999999999999999999999999999999998754
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.3e-18 Score=185.14 Aligned_cols=387 Identities=11% Similarity=0.001 Sum_probs=292.1
Q ss_pred HhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchH
Q 007396 39 KTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEE 114 (605)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 114 (605)
...++.+.|...+..+++.. +.++..+..+. ..| +.|++++|.+.|+++.+ .+...|..+...+...|++++
T Consensus 36 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELD-PNEPVFYSNIS---ACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhccHHHHHHHHHHHHhhC-CCCcHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHH
Confidence 33456788999999999876 33566777777 888 99999999999998754 456788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCchh---------------------
Q 007396 115 ALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVG------FECDLF--------------------- 167 (605)
Q Consensus 115 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~--------------------- 167 (605)
|+..|+.+.. .|+.. ...+..+...+....+...++.+++.. ..|+..
T Consensus 112 A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999974422 33322 122334444555667777777775431 111111
Q ss_pred ---------HHHHHHHHHHcC--------CCHHHHHHHHHhcCCC--C--------hhHHHHHHHHHHHCCChhHHHHHH
Q 007396 168 ---------VQNSLINMYGKC--------EKVEFASAIFKQMDQK--S--------VASWSAIIAAHASNGLWSECLKLF 220 (605)
Q Consensus 168 ---------~~~~li~~y~~~--------g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~ 220 (605)
....+...|... |++++|..+|+++.+. + ..+|..+...+...|++++|+..|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333333333332 4789999999988653 2 225777778899999999999999
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CC
Q 007396 221 GEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DK 297 (605)
Q Consensus 221 ~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~ 297 (605)
++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|++.. ..
T Consensus 267 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 267 QESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 999984 5678888899999999999999999999999876 4467889999999999999999999999875 34
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP----TVQHY 373 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~ 373 (605)
+...|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 56789999999999999999999999998853 23456888889999999999999999999874321111 22334
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 374 GCVVDLMGRA----------GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 374 ~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
..+...|.+. |++++|...|++. ...| +...|..+...+...|+.++|...++++.++.|.++...
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 5556777777 9999999999987 3344 456899999999999999999999999999999866543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=2.3e-17 Score=165.30 Aligned_cols=305 Identities=8% Similarity=-0.033 Sum_probs=214.5
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 207 (605)
...+..+...+...|++++|...++.+++..+. +..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 445667777888888999999999888887643 677888888888888888888888887653 3567788888888
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCC---C-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRP---E-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
...|++++|+..|++.... .| + ...+..+.... ....+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccC
Confidence 8888888888888888764 35 2 22222221100 01112234556666777
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
+++|.+.|+++. ..+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777776654 2344566666677777777777777777776532 234556666667777777777777777776
Q ss_pred HHhcCCCCC-hHHHH------------HHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHHhcCChHHH
Q 007396 361 KLEYRIVPT-VQHYG------------CVVDLMGRAGMLGEALELIQSM-PIQQNDV-----VWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 361 ~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~a~~~~g~~~~a 421 (605)
.+. .|+ ...+. .+...+.+.|++++|.+.+++. ...|+.. .+..+...+...|++++|
T Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 632 222 22222 2356688889999999988886 3334422 344567788899999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...++++.+.+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999989999999999999999999999999888753
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=9.3e-18 Score=168.17 Aligned_cols=317 Identities=9% Similarity=0.004 Sum_probs=223.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+++.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34567888899999999999999999998864 335668888899999999999999999999998643 6788999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCC------hhHHHHH------------HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQKS------VASWSAI------------IAAHASNGLWSECLKLFGEMNNEKCWRPEESIL 236 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~~------~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~ 236 (605)
+|.+.|++++|...|++..+.+ ...|..+ ...+...|++++|+..|+++.... +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 9999999999999999986532 3344444 456667777777777777766643 3344444
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHH
Q 007396 237 VSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGK 316 (605)
Q Consensus 237 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 316 (605)
..+...+...|+++.|...+..+.+.. +.+. ..|..+...|...|+++
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------------------------------~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNT-------------------------------EAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCH-------------------------------HHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------------------------------HHHHHHHHHHHHcCCHH
Confidence 444444455555555555555444433 2233 34445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCH-HH------------HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHH
Q 007396 317 EALSIFSEMLREGLEPDD-VV------------YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV--QHYGCVVDLMG 381 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~-~t------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~ 381 (605)
+|...|++..+. .|+. .. ...+...+...|++++|...++.+.....-.+.. ..+..+...+.
T Consensus 206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 555555555542 2221 11 1223556778888888888888887432111111 23556778888
Q ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 382 RAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++.+++|+++..+..+..++...
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 899999999998887 3345 5668888999999999999999999999999999888877777766543
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.1e-18 Score=173.58 Aligned_cols=344 Identities=13% Similarity=0.056 Sum_probs=161.3
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGH 156 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 156 (605)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8899999999999997664 9999999999999999999999653 6888999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHH
Q 007396 157 VFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESIL 236 (605)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~ 236 (605)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhH
Confidence 8774 45688899999999999999999988864 67789999999999999999999999976 268
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHH
Q 007396 237 VSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGK 316 (605)
Q Consensus 237 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 316 (605)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 89999999999999999999888 278999999999999999999988777655 34444556889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHhcCCHHH
Q 007396 317 EALSIFSEMLREGLEPDDVVYVGVLSACSH--AGLVNEGLLCFDRMKLEYRIVP------TVQHYGCVVDLMGRAGMLGE 388 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 388 (605)
+|..+++...... +-....|+-+.-++++ .+++.+..+.|. .+-+++| +...|.-++..|..-|+++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987532 2334455555555554 444555555444 3335555 46789999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 389 ALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 389 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
|...+-+-+ |+..--..+.....+..+.|.--++..--++..| ...+.|..++...=+...+.+++
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHH
Confidence 988765552 2322233334444555555554444444444433 23344444443333344443333
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5e-17 Score=160.93 Aligned_cols=286 Identities=10% Similarity=0.001 Sum_probs=167.7
Q ss_pred CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHH
Q 007396 128 EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAII 204 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 204 (605)
+.+...+......+...|++++|..+++.+++..+. +...+..++..+.+.|++++|...|+++.+ .+...|..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334445555555555556666666666665555422 333444444555555555555555555432 2344555555
Q ss_pred HHHHHCC-ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 205 AAHASNG-LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 205 ~~~~~~g-~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
..+...| ++++|...|++..... +. +...+..+...|...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE--KT-----------------------------------YGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--TT-----------------------------------CTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--Cc-----------------------------------cHHHHHHHHHHHHHccC
Confidence 5555555 5555555555555432 22 33344455555555555
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
+++|.+.|+++. ..+...|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|..+|+.+
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555555555443 2233445556666666666666666666666532 223456666666667777777777777666
Q ss_pred HHhcC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 361 KLEYR-------IVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 361 ~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
..... .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 53211 1233567777777777788888887777776 2233 4557777778888888888888888888888
Q ss_pred CCCCCchHHHHHHHH-HHcCCh
Q 007396 432 NSHHPSDYVLLSNMY-ARAQRW 452 (605)
Q Consensus 432 ~~~~~~~~~~l~~~~-~~~g~~ 452 (605)
+|+++..+..++.++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 888887877777777 344443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.1e-16 Score=156.39 Aligned_cols=264 Identities=8% Similarity=-0.031 Sum_probs=217.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+...+..+...+...|++++|+++|+++.... +.+...+..++.++...|+++.|..++..+.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566667777777788888888888877654 4445566666677777888888888888887765 34677888899
Q ss_pred hHHHhcC-CHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 007396 276 DMYVKCG-CLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 276 ~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 351 (605)
..|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998753 3467899999999999999999999999988532 23466777888999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC----------CCCHHHHHHHHHHHHhcCChHH
Q 007396 352 EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI----------QQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 352 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
+|..+|+.+.. -.+.+...+..+...|.+.|++++|.+.+++. .. .....+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999984 22445788999999999999999999999876 11 2335689999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
|...++++.+..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999887654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1.3e-16 Score=160.68 Aligned_cols=279 Identities=8% Similarity=-0.054 Sum_probs=209.1
Q ss_pred cCCCHHHHHH-HHHhcCC---C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh
Q 007396 178 KCEKVEFASA-IFKQMDQ---K----SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 178 ~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 3466777776 6664432 1 24457777777778888888888888777754 44566777777777778888
Q ss_pred hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHH---------------HHHHHHh
Q 007396 250 DLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSV---------------MISGLAM 311 (605)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~---------------li~~~~~ 311 (605)
+.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888887777765 346677777888888888888888888766422 1222211 2333448
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 007396 312 HGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEAL 390 (605)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 390 (605)
.|++++|...|+++.+..... +..++..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999998853221 4788889999999999999999999998843 2345788999999999999999999
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHHcCChhHHHH
Q 007396 391 ELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH-----------PSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 391 ~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
+.++++ ...| +...|..+..++...|++++|...++++.+..|.+ ...|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 4444 46689999999999999999999999999998876 6889999999999999999998
Q ss_pred HHHH
Q 007396 458 IRTE 461 (605)
Q Consensus 458 ~~~~ 461 (605)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.5e-16 Score=160.29 Aligned_cols=284 Identities=10% Similarity=-0.004 Sum_probs=154.4
Q ss_pred CCCchHHHH-HHHHHHHCCC---CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHH
Q 007396 109 EVEFEEALF-LYNEMFERGV---EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEF 184 (605)
Q Consensus 109 ~g~~~~A~~-l~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (605)
.|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++..+ .+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 466777776 6665543211 11344566777777777888888888877777653 356677777778888888888
Q ss_pred HHHHHHhcC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHH---------------HHHHhcc
Q 007396 185 ASAIFKQMD---QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV---------------LSACTHL 246 (605)
Q Consensus 185 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l---------------l~a~~~~ 246 (605)
|.+.|+++. ..+..+|..+...|...|++++|+..|+++.... +.+...+... +..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 888777654 3456678888888888888888888888887743 2222222111 1111234
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
|+++.|...+..+.+..... .+..+|..+...|...|++++|+..|+++.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444332111 023344445555555555555555555554
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-----
Q 007396 327 REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ----- 400 (605)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----- 400 (605)
+.. +.+..++..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|.+.|++. ...|
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 421 122345555555555555555555555555421 1223445555555555556666555555554 1111
Q ss_pred -------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 401 -------NDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 401 -------~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
...+|..+..++...|+.++|..++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1346666666666666666666665543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=3.8e-15 Score=156.43 Aligned_cols=351 Identities=10% Similarity=-0.020 Sum_probs=281.1
Q ss_pred CCChHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc----cCChH
Q 007396 78 WGSMDYACSIFRQIDE-PGAFDFNTLIRGFVK----EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK----LQALK 148 (605)
Q Consensus 78 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 148 (605)
.++++.|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 7899999999987654 466778888888888 899999999999998865 55667777777777 78999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----CCChhHHHHH
Q 007396 149 EGMQIHGHVFKVGFECDLFVQNSLINMYGK----CEKVEFASAIFKQMDQ-KSVASWSAIIAAHAS----NGLWSECLKL 219 (605)
Q Consensus 149 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 219 (605)
+|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|+..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999998886 56778888888887 7899999999987654 467788888888888 8999999999
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----cCCHHHHHHHH
Q 007396 220 FGEMNNEKCWRPEESILVSVLSACTH----LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----CGCLEKGLCLF 291 (605)
Q Consensus 220 ~~~m~~~g~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f 291 (605)
|++..+.| +...+..+...+.. .++.+.|..+++...+.+ +...+..+..+|.. .++.++|.++|
T Consensus 210 ~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 210 YRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 99988765 45566666666664 788999999999988876 45566778888887 89999999999
Q ss_pred hccCCC-CeeeHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHH
Q 007396 292 RMMADK-CQLTYSVMISGLAMH-----GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG---LVNEGLLCFDRMKL 362 (605)
Q Consensus 292 ~~m~~~-~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~ 362 (605)
++..+. +...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 987654 556777788888877 89999999999998865 4456666776776656 78999999999884
Q ss_pred hcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCC
Q 007396 363 EYRIVPTVQHYGCVVDLMGR----AGMLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 363 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~ 434 (605)
. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...|.. .++.++|...++++.+.+|+
T Consensus 360 -~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 360 -K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp -T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred -C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 2 467788888888888 78999999999887222356788888888887 89999999999999999854
Q ss_pred ---CCchHHHHHHHHHH
Q 007396 435 ---HPSDYVLLSNMYAR 448 (605)
Q Consensus 435 ---~~~~~~~l~~~~~~ 448 (605)
++.....|..++..
T Consensus 436 ~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTSCHH
T ss_pred CcCCHHHHHHHHhcCHh
Confidence 55555555555443
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=3.3e-14 Score=149.30 Aligned_cols=353 Identities=10% Similarity=-0.009 Sum_probs=295.5
Q ss_pred CCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCC
Q 007396 93 EPGAFDFNTLIRGFVK----EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK----LQALKEGMQIHGHVFKVGFEC 164 (605)
Q Consensus 93 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 164 (605)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3567777788888887 899999999999998875 56677778888887 899999999999999876
Q ss_pred chhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCCChhH
Q 007396 165 DLFVQNSLINMYGK----CEKVEFASAIFKQMDQ-KSVASWSAIIAAHAS----NGLWSECLKLFGEMNNEKCWRPEESI 235 (605)
Q Consensus 165 ~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t 235 (605)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 66778888899988 8899999999998764 466788888888887 889999999999998865 5667
Q ss_pred HHHHHHHHhc----cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----cCCHHHHHHHHhccCCC-CeeeHHHHH
Q 007396 236 LVSVLSACTH----LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----CGCLEKGLCLFRMMADK-CQLTYSVMI 306 (605)
Q Consensus 236 ~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li 306 (605)
+..+...+.. .++.++|...+....+.+ +...+..+..+|.. .++.++|.++|++..+. +...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777776 789999999999999876 45677888888887 89999999999987644 556777777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007396 307 SGLAM----HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA-----GLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377 (605)
Q Consensus 307 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 377 (605)
..|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|+...+ .+ +...+..+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHH
Confidence 78887 899999999999998764 455666677777776 899999999999884 33 456777788
Q ss_pred HHHHhcC---CHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH--
Q 007396 378 DLMGRAG---MLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR-- 448 (605)
Q Consensus 378 ~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 448 (605)
.+|.+.| ++++|.+.|++.-...+...+..|...|.. .++.++|...+++..+.+ ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888766 789999999987223567788889999988 899999999999999875 47788999999998
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 007396 449 --AQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 449 --~g~~~~a~~~~~~m~~~~~ 467 (605)
.++.++|.+.+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998763
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=5.2e-15 Score=157.06 Aligned_cols=392 Identities=9% Similarity=0.056 Sum_probs=280.7
Q ss_pred chhhccccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007396 62 NPFCASNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPAL 137 (605)
Q Consensus 62 ~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 137 (605)
+...|..++ . + +.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...|...
T Consensus 12 ~~~~w~~l~---~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILI---R-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHH---H-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CHHHHHHHH---H-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 556677777 6 5 78899999999998865 4 4556889999999999999999999999875 3676666666
Q ss_pred HHHH-HccCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHc---------CCCHHHHHHHHHhcCC-CC---h
Q 007396 138 FKAC-AKLQALKEGMQ----IHGHVFKV-GFEC-DLFVQNSLINMYGK---------CEKVEFASAIFKQMDQ-KS---V 197 (605)
Q Consensus 138 l~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~-~~---~ 197 (605)
+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|+++|++..+ |+ .
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 5433 34566666554 77766654 5443 46778877777655 6889999999988764 22 1
Q ss_pred hHHHHHHHHH-------------HHCCChhHHHHHHHHHH------hCC--CCCCCh--------hHHHHHHHHHhcc--
Q 007396 198 ASWSAIIAAH-------------ASNGLWSECLKLFGEMN------NEK--CWRPEE--------SILVSVLSACTHL-- 246 (605)
Q Consensus 198 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g--~~~p~~--------~t~~~ll~a~~~~-- 246 (605)
..|....... .+.+++.+|..++.++. +.. .++|+. ..|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2343322210 12345677777776532 211 023431 2344333322221
Q ss_pred --CCh----hhHHHHHHHHHHhcCCchHHHHhHHHhHHHh-------cCCHH-------HHHHHHhccCC---C-CeeeH
Q 007396 247 --GAL----DLGKCTHGSLIRNISALNVIVETSLIDMYVK-------CGCLE-------KGLCLFRMMAD---K-CQLTY 302 (605)
Q Consensus 247 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~ 302 (605)
++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|.++|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 222 35667888888764 4567888888888876 69987 89999998764 3 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDD--VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDL 379 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 379 (605)
..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|++++|..+|+...+. .| +...|......
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 9999999999999999999999998 45653 47888888888899999999999999842 33 23334333322
Q ss_pred -HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHHcCCh
Q 007396 380 -MGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS----DYVLLSNMYARAQRW 452 (605)
Q Consensus 380 -~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 452 (605)
+...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+|+++.+..|.++. .+...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999987 3334 4679999999999999999999999999998776655 677778888889999
Q ss_pred hHHHHHHHHHHhC
Q 007396 453 YDVAKIRTEMASK 465 (605)
Q Consensus 453 ~~a~~~~~~m~~~ 465 (605)
+.+.++.+++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=6.2e-15 Score=154.00 Aligned_cols=365 Identities=12% Similarity=-0.076 Sum_probs=241.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhC------
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFER-----G--VEPD-NFTFPALFKACAKLQALKEGMQIHGHVFKVG------ 161 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 161 (605)
...||.|...+...|++++|++.|++..+. + ..|+ ..+|..+..++...|++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888989999999999999999887542 1 1233 3578888889999999999999998887641
Q ss_pred CC-CchhHHHHHHHHHHcC--CCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHHCCChhHHHHHHHHHHhCCCCCCC
Q 007396 162 FE-CDLFVQNSLINMYGKC--EKVEFASAIFKQMDQ--K-SVASWSAIIAA---HASNGLWSECLKLFGEMNNEKCWRPE 232 (605)
Q Consensus 162 ~~-~~~~~~~~li~~y~~~--g~~~~A~~~~~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~p~ 232 (605)
.. ....+++.+..++.+. +++++|.+.|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence 11 1345666555555554 468999999988652 3 45555555444 445688889999999888754 345
Q ss_pred hhHHHHHHHHHh----ccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHH
Q 007396 233 ESILVSVLSACT----HLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVM 305 (605)
Q Consensus 233 ~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~l 305 (605)
...+..+...+. ..++++.|.+.++...+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 555555554443 3467888999999888876 4467788889999999999999999998775 2344566666
Q ss_pred HHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 306 ISGLAM-------------------HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 306 i~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
...|.. .+..++|...|++..+.. +.+..++..+...+...|++++|...|++... .
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~-- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS-K-- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-S--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-c--
Confidence 555533 234667888888877642 22345677888899999999999999999873 2
Q ss_pred CCChH----HHHHHHH-HHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 367 VPTVQ----HYGCVVD-LMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 367 ~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
.|+.. .+..+.. .+.+.|+.++|.+.|++. .+.|+...+... .+.+..++++.++.+|.++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 33322 2222322 234679999999999886 666765544333 34456778888899999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 441 LLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
.|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999998765433344553
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=6.7e-16 Score=149.95 Aligned_cols=267 Identities=10% Similarity=-0.014 Sum_probs=195.2
Q ss_pred HcCCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhH
Q 007396 177 GKCEKVEFASAIFKQMDQKSV----ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLG 252 (605)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a 252 (605)
...|++..|.+.++.....+. ...-.+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345666666666666554332 2334455666677777666665433 1 245556666666666666677777
Q ss_pred HHHHHHHHHhcC-CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 253 KCTHGSLIRNIS-ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
.+.++.+...+. +.+...+..+...|.+.|++++|++.|++ ..+...+..++..|.+.|+.++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777776666553 33566677788899999999999999998 456778889999999999999999999999985 4
Q ss_pred CCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHH
Q 007396 332 PDDVVY---VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWR 406 (605)
Q Consensus 332 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 406 (605)
|+.... ..++..+...|++++|..+|+++... .+.+...++.+...+.+.|++++|.+.+++. ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664321 12334444568999999999999854 4567889999999999999999999999996 4455 456899
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 407 SLLSASKVHHNLEI-GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 407 ~ll~a~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
.++..+...|+.++ +.++++++.+.+|+++.+ .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999999875 678999999999998754 3455666666665543
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=9.2e-18 Score=166.87 Aligned_cols=250 Identities=12% Similarity=0.068 Sum_probs=97.9
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567777777777777554 3777777777777777777777753 2455677777777777777777777666
Q ss_pred HHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007396 258 SLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVY 337 (605)
Q Consensus 258 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 337 (605)
...+. .+++.+.+.++.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 66653 33466677777788888888777777753 55667777888888888888888887765 367
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007396 338 VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHN 417 (605)
Q Consensus 338 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~ 417 (605)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 77777778888888887777765 25677777888888888888886655555444433 3357777778888
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc--CChhHHHHHH
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARA--QRWYDVAKIR 459 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 459 (605)
+++|..+++..+.+++...+.|.-|..+|++- ++..+..+.|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888888777777777777777777654 3444444444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=2.9e-16 Score=158.25 Aligned_cols=259 Identities=7% Similarity=-0.091 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
..|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|+++.|...++.+.+.. +.+..++..+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345555666666666666666666665543 3345556666666666666666666666666554 2345566666667
Q ss_pred HHhcCCHHHHHHHHhccCCCC-------------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMADKC-------------QLTYSVMISGLAMHGQGKEALSIFSEMLREGLE-PDDVVYVGVLSA 343 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a 343 (605)
|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|...|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777666654211 223445678889999999999999999885322 157788899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a 421 (605)
+...|++++|..+|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ ...|+ ..+|..+..++...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998843 2345788999999999999999999999987 44454 66899999999999999999
Q ss_pred HHHHHHHHhhCCC------------CCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 422 EIAAKNLFQINSH------------HPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 422 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
...++++.++.|. +...+..|..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998876 356789999999999999988877653
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=2.7e-16 Score=158.48 Aligned_cols=225 Identities=11% Similarity=-0.008 Sum_probs=133.7
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 207 (605)
...+..+...+.+.|++++|...++.+++..+. +..++..+..+|.+.|++++|.+.|++..+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344666677777777777777777777776533 566777777777777777777777776642 3566777788888
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCCh-h----------HHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-hHHHHhHHH
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPEE-S----------ILVSVLSACTHLGALDLGKCTHGSLIRNISAL-NVIVETSLI 275 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~~-~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li 275 (605)
...|++++|+..|+++.... |+. . .+..+...+...|+++.|...++.+.+..... +..++..+.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 88888888888888776632 321 1 12223455556666666666666666554221 455555666
Q ss_pred hHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 351 (605)
..|.+.|++++|.+.|++.. ..+..+|+.+...|...|++++|+..|+++.+. .| +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 66666666666666665543 223445555555566666666666666555543 22 2445555555555555555
Q ss_pred HHHHHHHHhH
Q 007396 352 EGLLCFDRMK 361 (605)
Q Consensus 352 ~a~~~~~~~~ 361 (605)
+|...|+++.
T Consensus 299 ~A~~~~~~al 308 (365)
T 4eqf_A 299 EAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=3e-14 Score=151.14 Aligned_cols=393 Identities=10% Similarity=0.007 Sum_probs=283.7
Q ss_pred hHHHHHHHh--ccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCcccHHHHHHH-
Q 007396 32 QECLTILKT--CKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRG- 105 (605)
Q Consensus 32 ~~~~~~l~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~- 105 (605)
..+..++.. -++.+.++.++..+++.- +.+...|..++ .++ +.|+++.|+.+|++... |++..|...+..
T Consensus 14 ~~w~~l~~~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~---~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 14 DAWSILIREAQNQPIDKARKTYERLVAQF-PSSGRFWKLYI---EAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 444444443 356899999999998753 44566788888 889 99999999999999875 777778777753
Q ss_pred HHhCCCchHHHH----HHHHHHHC-CCCCC-cchHHHHHHHHHc---------cCChHHHHHHHHHHHHhCCCCchhHHH
Q 007396 106 FVKEVEFEEALF----LYNEMFER-GVEPD-NFTFPALFKACAK---------LQALKEGMQIHGHVFKVGFECDLFVQN 170 (605)
Q Consensus 106 ~~~~g~~~~A~~----l~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (605)
....|+.++|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|+.+++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 345678877765 77776553 55554 3456666655443 688999999999998832121223444
Q ss_pred HHHHHH-------------HcCCCHHHHHHHHHh-------cC------CCC--------hhHHHHHHHHHHHC----CC
Q 007396 171 SLINMY-------------GKCEKVEFASAIFKQ-------MD------QKS--------VASWSAIIAAHASN----GL 212 (605)
Q Consensus 171 ~li~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~----g~ 212 (605)
...... .+.+++..|..++.. +. .|+ ...|...+.-.... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 332211 134567778776664 11 111 24666666443332 23
Q ss_pred h----hHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc-------cCChh-------hHHHHHHHHHHhcCCchHHHHhHH
Q 007396 213 W----SECLKLFGEMNNEKCWRPEESILVSVLSACTH-------LGALD-------LGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 213 ~----~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
. ++++.+|++..... +-+...|......+.+ .|+++ .|..+++..++.-.+.+...+..+
T Consensus 250 ~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 2 47888999988753 4467777777777764 78887 899999999874345578899999
Q ss_pred HhHHHhcCCHHHHHHHHhccCC--C-Ce-eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH-HHhccC
Q 007396 275 IDMYVKCGCLEKGLCLFRMMAD--K-CQ-LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLS-ACSHAG 348 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~-a~~~~g 348 (605)
+..+.+.|++++|.++|+++.+ + +. ..|...+..+.+.|+.++|..+|++..+. .|+ ...|..... .+...|
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999998763 3 32 47999999999999999999999999874 333 233332222 233589
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHH
Q 007396 349 LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQN--DVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999988542 335788999999999999999999999987 23332 448999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 007396 423 IAAKNLFQINSH 434 (605)
Q Consensus 423 ~~~~~~~~~~~~ 434 (605)
.+.+++.+..|.
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999998874
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.9e-15 Score=149.27 Aligned_cols=257 Identities=10% Similarity=-0.062 Sum_probs=178.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2334444444455555555555555555555443 224445555555666
Q ss_pred hcCCHHHHHHHHhccCCC---CeeeHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADK---CQLTYSVM--------------IS-GLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL 341 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (605)
..|++++|.+.|+++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 666666666665554311 11222222 22 3677889999999999998753 33667888888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 419 (605)
..+...|++++|..+++.+... .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998843 2345788999999999999999999999987 3344 4668999999999999999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 420 IGEIAAKNLFQINSH------------HPSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+|...++++.+..|. ++..+..++.+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999998 6788999999999999999999988643
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=177.96 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=132.2
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccC-------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMA-------DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
...-..+||+||++|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997753 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCC------HHHHHHHH
Q 007396 337 YVGVLSACSHAGL-VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQN------DVVWRSLL 409 (605)
Q Consensus 337 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~~ll 409 (605)
|+++|.++++.|+ .++|.++|++|. +.|+.||..+|++++....+.+-++.+.++...+ +|+ ..+...|.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHHH
Confidence 9999999999997 588999999999 5699999999999998888765555444443333 222 33444455
Q ss_pred HHHHhcC---------ChHHHHHHHHHHHhh
Q 007396 410 SASKVHH---------NLEIGEIAAKNLFQI 431 (605)
Q Consensus 410 ~a~~~~g---------~~~~a~~~~~~~~~~ 431 (605)
..|.+.+ ..++-..+|++-+.+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~~ 310 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLHM 310 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHHHH
Confidence 5555544 246666777776543
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=173.90 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=127.3
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChh
Q 007396 162 FECDLFVQNSLINMYGKCEKVEFASAIFKQMD-------QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEES 234 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~ 234 (605)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.| +.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH
Confidence 34445789999999999999999999997764 5899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhccCCh-hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-----CeeeHHHHHHH
Q 007396 235 ILVSVLSACTHLGAL-DLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-----CQLTYSVMISG 308 (605)
Q Consensus 235 t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~ 308 (605)
||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|.+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 999999999999985 789999999999999999999999999888876666665555544422 13344556666
Q ss_pred HHhcC
Q 007396 309 LAMHG 313 (605)
Q Consensus 309 ~~~~g 313 (605)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66555
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.5e-14 Score=142.86 Aligned_cols=252 Identities=13% Similarity=-0.022 Sum_probs=126.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHCCChh
Q 007396 138 FKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD---QKSVASWSAIIAAHASNGLWS 214 (605)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 214 (605)
...+...|++++|..+++.+++.... +...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|+++
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHH
Confidence 33333444444444444444433221 33344444444444444444444444432 123445555555555666666
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHH--------------HH-HHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 215 ECLKLFGEMNNEKCWRPEESILVSV--------------LS-ACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 215 ~A~~~~~~m~~~g~~~p~~~t~~~l--------------l~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
+|+..|+++.... +.+...+..+ .. .+...|+++.|...+..+.+.. +.+..++..+...|.
T Consensus 107 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 107 AALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 6666666555432 1111122111 11 2455666666666666666554 224556666666666
Q ss_pred hcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007396 280 KCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLC 356 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 356 (605)
+.|++++|.+.|+++. ..+...|..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|...
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 6666666666666543 2234455666666666666666666666665532 12344555555666666666666666
Q ss_pred HHHhHHhcCCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 357 FDRMKLEYRIVP-----------TVQHYGCVVDLMGRAGMLGEALELIQS 395 (605)
Q Consensus 357 ~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (605)
|+.+..... .. +...|..+...+.+.|+.++|.+++++
T Consensus 263 ~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 263 LVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 665552110 00 234455555555555555555555543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=5.7e-15 Score=143.39 Aligned_cols=247 Identities=10% Similarity=0.018 Sum_probs=202.1
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEE--SILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
|.-....|++++|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 4456678999999999987644 34543 3556678899999999998875543 2466888899999999999
Q ss_pred CCHHHHHHHHhccC----CC-CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007396 282 GCLEKGLCLFRMMA----DK-CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLC 356 (605)
Q Consensus 282 g~~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 356 (605)
|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 23 455677778899999999999999987 45677888899999999999999999
Q ss_pred HHHhHHhcCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 357 FDRMKLEYRIVPTVQH---YGCVVDLMGRAGMLGEALELIQSM-P-IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 357 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
|+.+.+. .|+... ...++..+...|++++|..+|+++ . .+.+...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999853 355422 223445555669999999999998 2 2346779999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCChhH-HHHHHHHHHhCC
Q 007396 432 NSHHPSDYVLLSNMYARAQRWYD-VAKIRTEMASKG 466 (605)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 466 (605)
+|+++.++..++..+...|++++ +.++++++.+.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578999888744
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=8.2e-13 Score=146.07 Aligned_cols=366 Identities=11% Similarity=0.116 Sum_probs=265.5
Q ss_pred cChHHHHHHHHHHHHhC--CCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHH
Q 007396 42 KNLEEFKKVHAHVLKWG--FFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFL 118 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 118 (605)
+.+.++.+++..++-.+ +.-+....|.|+ ... +. +........++... .....+...+...|.+++|..+
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi---~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLI---LTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHH---HHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhCCCHHHHHHH
Confidence 44666777777766221 112344555544 333 33 22333333333322 1234466777888999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh
Q 007396 119 YNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA 198 (605)
Q Consensus 119 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 198 (605)
|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|.+.|.+. .|..
T Consensus 1072 YkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~s 1135 (1630)
T 1xi4_A 1072 FRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS 1135 (1630)
T ss_pred HHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChH
Confidence 98852 11112233332 668888888888755 35788889999999999999999999775 6778
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMY 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 278 (605)
.|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+..+.+.|
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 88889999999999999999998877643 34333445888889988887544432 2 34556667799999
Q ss_pred HhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
...|++++|..+|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++..|.....
T Consensus 1206 e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999986 38999999999999999999999977 356889889999999999999888665
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhc--CChHHHHHHHHHHHhhCC-
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVH--HNLEIGEIAAKNLFQINS- 433 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~- 433 (605)
.+ ..++..+..++..|.+.|.+++|..+++.. +..|... .|.-|...+.+. ++..++.+.|..-....|
T Consensus 1275 ~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1275 HI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred hh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 43 356778889999999999999999999776 5555433 666666666544 566667777776555544
Q ss_pred ----CCCchHHHHHHHHHHcCChhHHHH
Q 007396 434 ----HHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 434 ----~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
.+...|.-++..|.+.|+|+.|..
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 466778899999999999999984
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=7.7e-13 Score=146.32 Aligned_cols=339 Identities=12% Similarity=0.043 Sum_probs=242.7
Q ss_pred Ccc-CCCChHHHHHHHhhcCC-CC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 007396 74 ALS-HWGSMDYACSIFRQIDE-PG-----AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA 146 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 146 (605)
..| ..|.+.+|.++++++.- |+ ...-|.++.+..+. +..+..+...+... ....-+...+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCC
Confidence 555 66666666666666542 22 12344455555444 34444444444321 113335556667778
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 007396 147 LKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNE 226 (605)
Q Consensus 147 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (605)
+++|.++|++.. ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 888888777641 1222223332 26677888888887663 4578889999999999999999998552
Q ss_pred CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHH
Q 007396 227 KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMI 306 (605)
Q Consensus 227 g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 306 (605)
-|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 366778889999999999999999998877765 33334445888999998888644443 344556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
..|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 8889999999999999884 478888999999999999999887663 558888888888889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc--CChhHHHHHHH
Q 007396 387 GEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA--QRWYDVAKIRT 460 (605)
Q Consensus 387 ~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 460 (605)
..|......+ ..+...+..++..|...|.+++|+.+++..+.+++.+.+.|.-|..+|++. ++..++.++|.
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9988877654 334556668888999999999999999999999988888998888888875 45555555554
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=3.3e-14 Score=148.47 Aligned_cols=362 Identities=10% Similarity=-0.018 Sum_probs=238.4
Q ss_pred chhhccccccccCcc-CCCChHHHHHHHhhcC-----------CC-CcccHHHHHHHHHhCCCchHHHHHHHHHHHC---
Q 007396 62 NPFCASNLVATCALS-HWGSMDYACSIFRQID-----------EP-GAFDFNTLIRGFVKEVEFEEALFLYNEMFER--- 125 (605)
Q Consensus 62 ~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~-----------~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 125 (605)
....||.|- .+| ..|+.++|++.|++.. .| ...+|+.+...|...|++++|...|++..+.
T Consensus 50 ~a~~yn~Lg---~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 50 KATMCNLLA---YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CCHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 355678777 888 9999999999997642 12 3567999999999999999999999887652
Q ss_pred --C-CCCC-cchHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHcCCCHHHHHHHHHhcC---
Q 007396 126 --G-VEPD-NFTFPALFKACAKL--QALKEGMQIHGHVFKVGFECDLFVQNSLINM---YGKCEKVEFASAIFKQMD--- 193 (605)
Q Consensus 126 --g-~~p~-~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~~~~m~--- 193 (605)
+ ..++ ..++.....++... +++++|...|+++++..+. +...+..+..+ +...++.++|.+.|++..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1122 23455554455443 5789999999999988643 55555555554 345677778888777654
Q ss_pred CCChhHHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHH
Q 007396 194 QKSVASWSAIIAAHAS----NGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 269 (605)
..+...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+..+ .+..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHH
Confidence 3456666666655544 467889999999988764 55677888999999999999999999999998763 3566
Q ss_pred HHhHHHhHHHhc-------------------CCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 270 VETSLIDMYVKC-------------------GCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 270 ~~~~li~~y~~~-------------------g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
++..+...|... +..+.|...|+... ..+...|..+...|...|++++|++.|++..+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 777777666432 23566777777654 44678899999999999999999999999988
Q ss_pred cCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CH
Q 007396 328 EGLEPDDV--VYVGVLS-ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-ND 402 (605)
Q Consensus 328 ~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 402 (605)
....|... .+..+.. ...+.|+.++|...|.+.. .+.|+....... ...+.+++++. ...| +.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCH
Confidence 54433321 2223322 3457899999999999887 345554332222 23333444433 2234 45
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLL 442 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 442 (605)
.+|..|...+...|+.++|+..++++++++|.+|.+..-+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp THHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 6899999999999999999999999999998877665443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.4e-13 Score=128.97 Aligned_cols=225 Identities=7% Similarity=-0.012 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+.+......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 345555666666666666666666655532 4444455555555555555555555554443321100
Q ss_pred HHhcCCHHHHHHHHhccCCCC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMADKC----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 353 (605)
++ ...|..+...|...|++++|...|++..+. .|+.. .+...|++++|
T Consensus 73 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKE 124 (258)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHH
Confidence 00 245556666667777777777777777663 34432 34455677888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 354 LLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
...++.+.. ..+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888877763 12224566777888888888888888888876 3333 4668888888899999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 432 NSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9998889999999999999999999999888764
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.2e-13 Score=129.70 Aligned_cols=241 Identities=10% Similarity=-0.075 Sum_probs=170.4
Q ss_pred CCChhHHHHHHHHHHhCCCC-C-CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHH
Q 007396 210 NGLWSECLKLFGEMNNEKCW-R-PEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~-~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 287 (605)
.|++++|+..|+++.+.... . .+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45666666666666654200 1 123455566666666677777777766666654 33566777778888888888888
Q ss_pred HHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 007396 288 LCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEY 364 (605)
Q Consensus 288 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 364 (605)
.+.|++.. ..+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 88887665 235677888888889999999999999998874 455555555555667779999999999877743
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 365 RIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++.+.+|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 3677777888889999998876 33332 4688889999999999999999999999999876544
Q ss_pred HHHHHHHHHHcCChhHHHHHH
Q 007396 439 YVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 66778889998887765
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=6.9e-13 Score=125.85 Aligned_cols=234 Identities=9% Similarity=-0.021 Sum_probs=158.9
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCCC----hhHHH
Q 007396 165 DLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKC-WRPE----ESILV 237 (605)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~p~----~~t~~ 237 (605)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++...... ..|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356788899999999999999999987642 6778999999999999999999999999876420 1112 34455
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHH
Q 007396 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 238 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 317 (605)
.+...+...|+++.|...+..+.+.... ...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------------------ADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch----------------------------------------hHHHHHHhHHHH
Confidence 5555555555555555555555554321 123444556666
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 318 ALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 318 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
|...++++... .|+ ...+..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666652 332 245556666677777777777777777632 1234566777777777777777777777766
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC------CCCCchHHHH
Q 007396 397 -PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN------SHHPSDYVLL 442 (605)
Q Consensus 397 -~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l 442 (605)
...| +...|..+..++...|+.++|...++++.+.. |.+...+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 3334 35577778888888888888888888888887 6554444433
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=5e-13 Score=123.67 Aligned_cols=194 Identities=10% Similarity=-0.033 Sum_probs=148.7
Q ss_pred CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 007396 265 ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGV 340 (605)
Q Consensus 265 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 340 (605)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 445667777888888888888888888876533 4567888888888899999999999888874 44 44677778
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHH
Q 007396 341 LSACSHA-----------GLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRS 407 (605)
Q Consensus 341 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 407 (605)
...+... |++++|...|++..+. .| +...+..+...|...|++++|.+.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999998842 34 4678888999999999999999999887 22267789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=3.2e-13 Score=129.65 Aligned_cols=182 Identities=6% Similarity=-0.206 Sum_probs=97.2
Q ss_pred Ccc-CCCChHHHHHHHhhcCCC-------CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccC
Q 007396 74 ALS-HWGSMDYACSIFRQIDEP-------GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQ 145 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 145 (605)
..+ ..|++++|...|+++.+. +...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 445 667777777777665431 23456666666666677777777776666642 223455666666666666
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
++++|...++.+++.... +..++..+..+|.+.|++++|.+.|+++.+ |+...+...+..+...|++++|+..|++.
T Consensus 92 ~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp CHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666666666666665422 455555566666666666666666655532 22222223333334445566666666555
Q ss_pred HhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 007396 224 NNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLI 260 (605)
Q Consensus 224 ~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 260 (605)
.... +++...+. ++..+...++.+.|...+..+.
T Consensus 171 ~~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 171 FEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred HhcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence 4432 22322222 3333344444444444444433
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=5.3e-12 Score=130.62 Aligned_cols=372 Identities=9% Similarity=-0.031 Sum_probs=200.1
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCCh---HHHHHHHhhcCCCCcccHHHHHHHHHhCC--
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSM---DYACSIFRQIDEPGAFDFNTLIRGFVKEV-- 110 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 110 (605)
..-.-++.+.|.+++..+.+.| ++..+..|- .+| ..|+. ++|...|++..+.+...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg---~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLA---DIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHH---HHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3334456788889999888876 344445555 778 88888 89999999887777778888877566655
Q ss_pred ---CchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC----
Q 007396 111 ---EFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALK---EGMQIHGHVFKVGFECDLFVQNSLINMYGKCE---- 180 (605)
Q Consensus 111 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 180 (605)
++++|+..|++..+.|. ...+..+...+...+..+ .+.+.+....+.| +......|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67899999999988763 235666666666554433 3445555555555 3556667777787777
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHCC---ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc----CChhhHH
Q 007396 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNG---LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL----GALDLGK 253 (605)
Q Consensus 181 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~----~~~~~a~ 253 (605)
..+++..+++.....+..++..+...|...| +.++|++.|++..+.| .++...+..+...+... ++.++|.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4566667777777777778888888888888 8888888888888877 55555444454444433 4555555
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD 333 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (605)
..++... .| +...+..|..+|.. ....++.++|+..|++..+.| +
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~----------------------------~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYD----------------------------FPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHH----------------------------SGGGCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHh----------------------------CCCCCCHHHHHHHHHHHHHCC---C
Confidence 5555554 22 23333333333110 023455566666666655544 3
Q ss_pred HHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHCCCCCCHHH
Q 007396 334 DVVYVGVLSACSHAG-----LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----AGMLGEALELIQSMPIQQNDVV 404 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~ 404 (605)
...+..|...|. .| +.++|..+|+... .-+...+..|..+|.. ..++++|...|++.-..-+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 344444444444 33 6666666665543 2234445555555544 2366666666666521222334
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 405 WRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 405 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
...|...|.. ..|.++|...+++..+.++.........+......++.++|.++.++-+
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444444432 3467777777777777665322222112211122334555555555443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=8.3e-13 Score=126.62 Aligned_cols=241 Identities=8% Similarity=-0.027 Sum_probs=131.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHH
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE--ESILVSVLSAC 243 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~ 243 (605)
.......|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++....+ -.|+ ...+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHH
Confidence 34455666677777777777766542 234466666677777777777777777766532 1222 12355555566
Q ss_pred hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHH
Q 007396 244 THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALS 320 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 320 (605)
...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+. +...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554 223445555555666666666666655555432 22333333312222234555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHC-
Q 007396 321 IFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM---LGEALELIQSM- 396 (605)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m- 396 (605)
.|++..+. .|+ +...+..+...+...|+ .++|...+++.
T Consensus 164 ~~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 55444442 222 13333334444444444 33344444333
Q ss_pred ---CCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 397 ---PIQQN------DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 397 ---~~~p~------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
...|+ ..+|..+...+...|++++|...++++++++|+++.....+......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 11122 23667777788888999999999999999999887766655554433
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=1.2e-11 Score=117.03 Aligned_cols=205 Identities=8% Similarity=-0.069 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHh
Q 007396 197 VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLID 276 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 276 (605)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|.+.++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 3455555566666666666666666655432 2233333333333344444444444443333332
Q ss_pred HHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 007396 277 MYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLL 355 (605)
Q Consensus 277 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 355 (605)
..+...|..+...|...|++++|.+.|+++.+.+..|+ ...+..+...+...|++++|..
T Consensus 102 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 102 -------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 11223344444444455555555555555544223332 2344445555555666666666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 356 CFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 356 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|...++++.+..|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66555531 1223455555566666666666666666554 2222 334555555566666666666666666666666
Q ss_pred CCCc
Q 007396 434 HHPS 437 (605)
Q Consensus 434 ~~~~ 437 (605)
+++.
T Consensus 241 ~~~~ 244 (252)
T 2ho1_A 241 GSLE 244 (252)
T ss_dssp TSHH
T ss_pred CCHH
Confidence 5543
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=4.1e-12 Score=117.49 Aligned_cols=192 Identities=14% Similarity=0.062 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
..|..+...+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 344444445555555555555555544432 2233444444444444455555555444444443 2234444455555
Q ss_pred HHhc-----------CCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 278 YVKC-----------GCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 278 y~~~-----------g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
|.+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5554 55555655555443 1234455555556666666666666666665544 455555556666
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
+...|++++|...|+...+. -+.+...+..+...+.+.|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666665531 1223455555555666666666666555543
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.1e-11 Score=114.74 Aligned_cols=197 Identities=12% Similarity=0.010 Sum_probs=141.2
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.++++.+.. ..+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566666777777777777777776554 2345567777777777788888888777777642 2345667777777
Q ss_pred Hhcc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007396 344 CSHA-GLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 344 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 419 (605)
+... |++++|..+|+.+.. .+..|+ ...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7778 888888888887774 223333 566777777788888888888887776 3333 3557777777888888888
Q ss_pred HHHHHHHHHHhhCC-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 420 IGEIAAKNLFQINS-HHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 420 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|...++++.+..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 77777777777888888888888888877653
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=8.4e-12 Score=118.10 Aligned_cols=197 Identities=9% Similarity=-0.068 Sum_probs=167.9
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSAC 344 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 344 (605)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5667777888888888888888887764 3356678888889999999999999999998753 23567888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007396 345 SHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 345 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 421 (605)
...|++++|..+|+.+.. .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999984 33445 4678888999999999999999999987 3334 467889999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...++++.+..|.+...+..++.+|...|++++|.++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=8.4e-12 Score=129.12 Aligned_cols=343 Identities=9% Similarity=-0.041 Sum_probs=220.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL---KEGMQIHGHVFKVGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (605)
+...+.+.|++++|+.+|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566777889999999999988776 333444555555666777 8888888888755 44556666664555
Q ss_pred CC-----CHHHHHHHHHhcCCC-ChhHHHHHHHHHHHCCChh---HHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh
Q 007396 179 CE-----KVEFASAIFKQMDQK-SVASWSAIIAAHASNGLWS---ECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 179 ~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
.| +.++|.+.|++..++ +...+..+...|...+... ++++.+......| +......+...+...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCc
Confidence 54 778898888877643 4557788888888776544 3455555555444 344555666666677766
Q ss_pred hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC---CHHHHHHHHhccCCCC---eeeHHHHHHHHHhc----CCHHHHH
Q 007396 250 DLGKCTHGSLIRNISALNVIVETSLIDMYVKCG---CLEKGLCLFRMMADKC---QLTYSVMISGLAMH----GQGKEAL 319 (605)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~----g~~~~A~ 319 (605)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+.+ ...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 665555444444333334447888888898888 8888999998775433 22335566666544 6889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----CHHHHHH
Q 007396 320 SIFSEMLREGLEPDDVVYVGVLSA-C--SHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-----MLGEALE 391 (605)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 391 (605)
..|++.. .| +...+..+... + ...++.++|..+|++... .| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999887 33 33444455544 3 458899999999998873 34 5666777777776 45 8999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHH
Q 007396 392 LIQSMPIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR----AQRWYDVAKIRTEMA 463 (605)
Q Consensus 392 ~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 463 (605)
.|++.- .-+...+..|...|.. ..|.++|...+++..+.+ ++.....|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999887 5566677777766655 348899999999887754 46678888888875 458889999999888
Q ss_pred hCCC
Q 007396 464 SKGL 467 (605)
Q Consensus 464 ~~~~ 467 (605)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 8775
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=4.9e-12 Score=127.00 Aligned_cols=241 Identities=10% Similarity=0.034 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCC-hhHHHHHHHHHHhCCCCCCChhHHHHHHHH
Q 007396 167 FVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGL-WSECLKLFGEMNNEKCWRPEESILVSVLSA 242 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a 242 (605)
.+|+.+...|.+.|++++|.+.|++..+ .+..+|+.+...+...|+ +++|+..|++...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----------------- 160 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----------------- 160 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-----------------
Confidence 3445555555555555555555554431 234455555555555554 5555555555554
Q ss_pred HhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHH
Q 007396 243 CTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
.. +.+..+|+.+..+|.+.|++++|+..|+++. ..+...|..+..++...|++++|+
T Consensus 161 -------------------l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 161 -------------------EQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp -------------------HC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred -------------------HC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 33 2234445555555555555555555555443 223455666666666666677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHH-----HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcC--CHHHHH
Q 007396 320 SIFSEMLREGLEPDDVVYVGVLSACSH-AGLVNEG-----LLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAG--MLGEAL 390 (605)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~ 390 (605)
..|+++++... -+...|..+..++.. .|..++| ...|+.... +.| +...|..+..+|.+.| ++++|.
T Consensus 221 ~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 221 QYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 77777666321 134566666666666 4443555 466666653 234 3566777777777777 577888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HhhCCCCCchHHHHHHHHHH
Q 007396 391 ELIQSMPIQQN-DVVWRSLLSASKVHH--------N-LEIGEIAAKNL-FQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 391 ~~~~~m~~~p~-~~~~~~ll~a~~~~g--------~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 448 (605)
+.++++...|+ ...+..+...+...| + .++|+.+++++ .+++|.....|..++..+..
T Consensus 297 ~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 87777744454 457777777777653 2 58899999999 88999888787777766543
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.3e-12 Score=131.78 Aligned_cols=197 Identities=10% Similarity=-0.040 Sum_probs=122.9
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCCC---------CeeeHHHHHHHHHhcCC-----------------HHHHHHHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMADK---------CQLTYSVMISGLAMHGQ-----------------GKEALSIF 322 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 322 (605)
.++..+...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 34444555555555555555555443211 12345555555566666 66666666
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 007396 323 SEMLRE----GLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELI 393 (605)
Q Consensus 323 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 393 (605)
++..+. +..|. ..++..+...+...|++++|..+|++......-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 554331 11111 235666667777778888887777776532111112 236677777888888888888877
Q ss_pred HHC-CC---CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCchHHHHHHHHHHcCChhHHHHHH
Q 007396 394 QSM-PI---QQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 394 ~~m-~~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
++. .. ..+ ..++..+...+...|++++|...++++.+..+. ....+..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 765 11 111 346777788888889999999998888876433 2347788899999999999999999
Q ss_pred HHHHhC
Q 007396 460 TEMASK 465 (605)
Q Consensus 460 ~~m~~~ 465 (605)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=3.9e-12 Score=119.51 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=65.3
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 380 (605)
.|..+...|...|++++|...++++.+.. ..+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444455555555555444422 123334444444555555555555555554421 112344444455555
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVL 441 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (605)
.+.|++++|.+.++++ ...| +..+|..+..++...|+.++|...++++.+.+|+++..+..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 5555555555555444 1112 23345555555555555555555555555555555444433
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=5.3e-12 Score=128.51 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=122.4
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCC--------------------HHHHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQ--------------------GKEAL 319 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 319 (605)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3444555555555555555555554331 11 2245555566666666 66666
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHH
Q 007396 320 SIFSEMLRE----GLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEAL 390 (605)
Q Consensus 320 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 390 (605)
..+++.... +..|. ..++..+...+...|++++|...|++...-..-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666655431 11111 235666667777778888888777776532111122 236677777788888888888
Q ss_pred HHHHHC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHHcCChhHHH
Q 007396 391 ELIQSM----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 391 ~~~~~m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~ 456 (605)
+.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 877765 11112 3467777778888888888888888887764332 446778888888888888888
Q ss_pred HHHHHHHh
Q 007396 457 KIRTEMAS 464 (605)
Q Consensus 457 ~~~~~m~~ 464 (605)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=2.5e-11 Score=112.27 Aligned_cols=210 Identities=9% Similarity=-0.063 Sum_probs=136.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+...|..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|...++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------ 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------ 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------------
Confidence 34456666667777777777777777666543 2234444444444444444444444444444332
Q ss_pred hHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMH-GQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 353 (605)
..+...|..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|
T Consensus 73 --------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 73 --------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp --------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 22334555666667777 777777777777766333344 35666677777788888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 354 LLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ--NDVVWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|+.+.+...++.+.+
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888877742 1234677778888888888888888888776 2223 455677777777888999999999999888
Q ss_pred hCCCCCchHHH
Q 007396 431 INSHHPSDYVL 441 (605)
Q Consensus 431 ~~~~~~~~~~~ 441 (605)
..|+++.....
T Consensus 211 ~~p~~~~~~~~ 221 (225)
T 2vq2_A 211 NFPYSEELQTV 221 (225)
T ss_dssp HCTTCHHHHHH
T ss_pred hCCCCHHHHHH
Confidence 88887665443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=5.1e-11 Score=114.33 Aligned_cols=228 Identities=9% Similarity=-0.059 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHhcCCchHHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH----LGALDLGKCTHGSLIRNISALNVIVE 271 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 271 (605)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566666677777777777777777766533 23344444445555 555555555555555543 33444
Q ss_pred hHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c
Q 007396 272 TSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH----A 347 (605)
Q Consensus 272 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~ 347 (605)
..+..+|... ....+++++|+..|++..+.+ +...+..+...+.. .
T Consensus 78 ~~lg~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 78 HLLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc
Confidence 4444444440 000455555555555554432 34444445555555 5
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----AGMLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLE 419 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~ 419 (605)
++.++|..+|++..+ .+ +...+..+...|.+ .+++++|.+.|++.-...+...+..+...+.. .++.+
T Consensus 128 ~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 128 RDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp CCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred cCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHH
Confidence 555555555555552 12 33444445555554 55566666655554111234455555556666 66666
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYAR----AQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 466 (605)
+|...+++..+.+| +..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 204 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 204 EALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666666666654 4556666666666 666666766666666544
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=6.4e-11 Score=113.62 Aligned_cols=229 Identities=10% Similarity=-0.093 Sum_probs=161.5
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCCChhHHHHH
Q 007396 165 DLFVQNSLINMYGKCEKVEFASAIFKQMDQK-SVASWSAIIAAHAS----NGLWSECLKLFGEMNNEKCWRPEESILVSV 239 (605)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 239 (605)
+...+..+...|.+.|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHH
Confidence 5677888899999999999999999987654 56788889999999 999999999999998865 66778888
Q ss_pred HHHHhc----cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCH
Q 007396 240 LSACTH----LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQG 315 (605)
Q Consensus 240 l~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 315 (605)
...+.. .+++++|...++...+.+ +...+..+..+|.+.. ...+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCH
Confidence 888888 888999998888888765 4555555555555500 004444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHH
Q 007396 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSH----AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----AGMLG 387 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 387 (605)
++|+..|++..+.+ +...+..+...+.. .++.++|..+|+...+. .+...+..+...|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555554433 33444445555554 66666666666666531 234555666666666 67777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCC
Q 007396 388 EALELIQSM-PIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~ 435 (605)
+|.+.|++. ... +...+..+...+.. .++.++|...+++..+.+|++
T Consensus 204 ~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 204 EALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777665 222 25566677777777 788888888888888888753
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=4.4e-12 Score=119.11 Aligned_cols=198 Identities=10% Similarity=0.055 Sum_probs=152.9
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. ..+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677777888888888888888887653 245678888889999999999999999998753 335678888889
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|..+|+++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999853 2346788889999999999999999999987 3334 56688899999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|+..++++.+..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999998754
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=9.6e-12 Score=122.66 Aligned_cols=261 Identities=10% Similarity=0.005 Sum_probs=167.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHhccCChhhHHHHHHHHHHh----cC-CchHHHHhH
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPE----ESILVSVLSACTHLGALDLGKCTHGSLIRN----IS-ALNVIVETS 273 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 273 (605)
....+...|++++|+..|+++.... +.+ ...+..+...+...|+++.|...+..+.+. +. +....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555555555555555555432 112 133444455555555555555555544422 11 112445566
Q ss_pred HHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQ--------------------GKEALSIFSE 324 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 324 (605)
+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66667777777777766665431 11 2256666677777777 7777777776
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 325 MLRE----GLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQS 395 (605)
Q Consensus 325 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (605)
.... +..|. ..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 11111 236667777888889999999888887632111122 33677888888999999999998877
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 396 M----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 396 m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 3477778888999999999999999988775432 34778899999999999999999999
Q ss_pred HHhC
Q 007396 462 MASK 465 (605)
Q Consensus 462 m~~~ 465 (605)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=3.7e-11 Score=114.98 Aligned_cols=226 Identities=10% Similarity=-0.022 Sum_probs=177.1
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CC----hhHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KS----VASWSAII 204 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li 204 (605)
...+......+...|++++|...++.+++..+. +...+..+...|.+.|++++|.+.|++..+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 345566777888999999999999999988643 566888899999999999999999998764 22 23588999
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH-hHHHhcCC
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI-DMYVKCGC 283 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~ 283 (605)
..|...|++++|+..|++..+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+. ..|. .++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 99999999999999999998864 4567889999999999999999999999998874 44677777787 5555 469
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCCH
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQ---GKEALSIFSEMLREG-LEPDD------VVYVGVLSACSHAGLV 350 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~ 350 (605)
+++|.+.|+++. ..+...|..+...+...|+ +++|...|++..+.. -.|+. ..|..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999876 2345667777778888887 778888888877632 12331 3555566667777777
Q ss_pred HHHHHHHHHhH
Q 007396 351 NEGLLCFDRMK 361 (605)
Q Consensus 351 ~~a~~~~~~~~ 361 (605)
++|..+|++..
T Consensus 238 ~~A~~~~~~al 248 (272)
T 3u4t_A 238 VKADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777766
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.2e-11 Score=125.80 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGL-EPD----DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQH 372 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 372 (605)
|..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|..+++.......-.++ ...
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 44444445555555555555554432100 011 124555556666666666666666655421111111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCch
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPSD 438 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 438 (605)
+..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++..++.+. ...+
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 349 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 666777777777777777777665 11112 346777778888889999999888888776322 3456
Q ss_pred HHHHHHHHHHcCChhH
Q 007396 439 YVLLSNMYARAQRWYD 454 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~ 454 (605)
+..++.+|...|+...
T Consensus 350 ~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 350 RLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhhHhHH
Confidence 7788889988887643
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=1.8e-11 Score=122.89 Aligned_cols=217 Identities=11% Similarity=0.030 Sum_probs=171.1
Q ss_pred hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC-HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHH
Q 007396 244 THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC-LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
...|+++.|...++.+++.. +.+..+|+.+...|.+.|+ +++|+..|++.. ..+...|+.+...+...|++++|+
T Consensus 108 ~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 33344444444444444333 3356778888888999996 999999999876 346788999999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHH-----HHH
Q 007396 320 SIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR-AGMLGEA-----LEL 392 (605)
Q Consensus 320 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A-----~~~ 392 (605)
..|+++.+. .| +...|..+..++...|++++|...|+++.+. -+-+...|+.+..+|.+ .|..++| ++.
T Consensus 187 ~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 187 EFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 999999984 44 5678888999999999999999999999842 12357889999999999 6665777 477
Q ss_pred HHHC-CCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC---------ChhHHHHHH
Q 007396 393 IQSM-PIQQN-DVVWRSLLSASKVHH--NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ---------RWYDVAKIR 459 (605)
Q Consensus 393 ~~~m-~~~p~-~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~ 459 (605)
+++. .+.|+ ...|..+...+...| +.++|...++++ +.+|+++..+..|+.+|.+.| ..++|.+++
T Consensus 263 ~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 7665 45564 568999988888888 689999999998 888999999999999999875 358999999
Q ss_pred HHH-HhCC
Q 007396 460 TEM-ASKG 466 (605)
Q Consensus 460 ~~m-~~~~ 466 (605)
+++ .+.+
T Consensus 342 ~~l~~~~D 349 (382)
T 2h6f_A 342 EILAKEKD 349 (382)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 998 5543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.5e-11 Score=125.62 Aligned_cols=132 Identities=13% Similarity=-0.021 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGL-EPD----DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP----TVQH 372 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~ 372 (605)
|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+|++......-.. ....
T Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444444555555544444433100 011 12455556666666666666666665543211111 1355
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
+..+...|.+.|++++|.+.+++. +..+. ..++..+...+...|+.++|...+++..++.+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 666777777777777777777665 11111 23677778888899999999999999888765
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=3.3e-11 Score=118.78 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=54.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DV 403 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~ 403 (605)
++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|.+.+++. +..+. ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444555555555555555555554421111111 345555666666666666666666554 11111 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566677777788888888888888777654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=9.4e-12 Score=129.59 Aligned_cols=190 Identities=8% Similarity=-0.067 Sum_probs=143.7
Q ss_pred hHHHHhHHHhHHHhcCCH-HHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCL-EKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~-~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
+...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|...|++..+ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 344444444445555555 55555554432 22344666677777777777888888887776 4577777777778
Q ss_pred HHhcc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHHHC-CCCC----
Q 007396 343 ACSHA---------GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA--------GMLGEALELIQSM-PIQQ---- 400 (605)
Q Consensus 343 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p---- 400 (605)
.+... |++++|...|++..+. -+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8888888888888742 123467788888888888 8899999999887 4455
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
+...|..+..++...|++++|...++++.+++|.++..+..+..++...|++++|.+.+.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999999999999999999999987553
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.4e-10 Score=103.93 Aligned_cols=164 Identities=11% Similarity=0.074 Sum_probs=126.0
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 377 (605)
+..|..+...|.+.|++++|++.|++..+. .| +..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 345666777777777777777777777763 33 3456777777777888888888888777632 223456666677
Q ss_pred HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHH
Q 007396 378 DLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (605)
..+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7778888888888888776 3334 4557888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 007396 456 AKIRTEMASKG 466 (605)
Q Consensus 456 ~~~~~~m~~~~ 466 (605)
.+.+++..+.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999888754
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=5.9e-10 Score=108.99 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHhCCCCCCChhHHHHHHHHHh-------ccCCh-------hhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 214 SECLKLFGEMNNEKCWRPEESILVSVLSACT-------HLGAL-------DLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 214 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
++|+..|++..... +-+...|......+. +.|++ ++|..+++..++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666666666532 334445555544443 23554 666666666666312335566777777777
Q ss_pred hcCCHHHHHHHHhccCCC---Cee-eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADK---CQL-TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSAC-SHAGLVNEGL 354 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~---~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 354 (605)
+.|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777765532 232 677777777777888888888887776432 2233343332222 2357888888
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 355 LCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-P---IQQ--NDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
.+|+...+.. +-+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777432 235677777777888888888888888776 2 244 2457777777777888888888888888
Q ss_pred HhhCCCCC
Q 007396 429 FQINSHHP 436 (605)
Q Consensus 429 ~~~~~~~~ 436 (605)
.+..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88877654
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=2.7e-11 Score=118.24 Aligned_cols=241 Identities=9% Similarity=0.003 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhC-------CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh------c-
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNE-------KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN------I- 263 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~- 263 (605)
.+|..+...|...|++++|+.+|+++... . .+.....+..+...+...|+++.|...+..+.+. +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35566666666666666666666666542 1 1222334445555555556666666555555543 1
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC-------C----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD-------K----CQLTYSVMISGLAMHGQGKEALSIFSEMLRE---- 328 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 328 (605)
.+....++..+...|...|++++|.+.|++..+ + ....|..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 122345566666677777777777666655431 1 1223444555555555555555555555432
Q ss_pred --CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCC
Q 007396 329 --GLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEY------RIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQ 399 (605)
Q Consensus 329 --g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (605)
+..|+. .++..+...+...|++++|..+|+.+.... ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 112211 234444444555555555555555444210 00000000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 400 QNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
....+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222222334445555566666666666666667777788888888888888887777654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=2e-10 Score=116.19 Aligned_cols=159 Identities=8% Similarity=0.030 Sum_probs=76.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHhccCChhhHHHHHHHHHHhcC------CchHHHHh
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPE----ESILVSVLSACTHLGALDLGKCTHGSLIRNIS------ALNVIVET 272 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 272 (605)
....+...|++++|+..|++....-.-.+| ..++..+...+...|+++.|...+....+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666666666666666543100122 23444445555555555555555555443210 11123455
Q ss_pred HHHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEPD-DVVYV 338 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 338 (605)
.+...|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555666666666555554321 11 124444555555555555555555555431 11122 23444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 007396 339 GVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 339 ~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
.+...+...|++++|..++++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555444
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=9.5e-11 Score=118.57 Aligned_cols=225 Identities=8% Similarity=-0.062 Sum_probs=171.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHHh----cCCc-hHHHHhHHHhHHHhcCCHHHHHHHHhccCC-----CC-----eeeHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRN----ISAL-NVIVETSLIDMYVKCGCLEKGLCLFRMMAD-----KC-----QLTYS 303 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~-----~~~~~ 303 (605)
....+...|+++.|...+..+.+. +.++ ...++..+...|...|++++|...|++..+ .+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667899999999999999864 2122 457788999999999999999998887641 11 34788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCChHHHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGL-EPDD----VVYVGVLSACSHAGLVNEGLLCFDRMKLE---YRI-VPTVQHYG 374 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~ 374 (605)
.+...|...|++++|+..|++..+... .++. .++..+...+...|++++|...|++...- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998875311 1222 47888889999999999999999988741 122 23357788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC-CC-----CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 375 CVVDLMGRAGMLGEALELIQSM-PI-----QQN-DVVWRSLLSASKVHHN---LEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886 11 122 2245667777888888 67777777665 112334557788999
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 007396 445 MYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~ 464 (605)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=7.5e-09 Score=110.91 Aligned_cols=215 Identities=9% Similarity=-0.023 Sum_probs=114.9
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHH-HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 216 CLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGK-CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 216 A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
+..+|++.... .+-+...|.....-+.+.|+.+.|. .+++..+... +.+...+-..+..+-+.|+++.|.++|+.+
T Consensus 328 v~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 328 MTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555443 2334455555555555556666664 6666666532 344555556666666666666666666655
Q ss_pred CC-------------CC------------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcc
Q 007396 295 AD-------------KC------------QLTYSVMISGLAMHGQGKEALSIFSEMLRE-GL-EPDDVVYVGVLSACSHA 347 (605)
Q Consensus 295 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~a~~~~ 347 (605)
.. |+ ...|...+....+.|..+.|..+|.+..+. +. .+......+.+.- ...
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhC
Confidence 42 11 124555555555666666666666666654 11 1111121122221 112
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC----CHHHHHHHHHHHHhcCChHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ----NDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34666666666666432 233444556666666666666666666664 2222 1235666666666666666666
Q ss_pred HHHHHHHhhCCCCC
Q 007396 423 IAAKNLFQINSHHP 436 (605)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (605)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 66666666666543
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.6e-10 Score=103.50 Aligned_cols=166 Identities=10% Similarity=-0.013 Sum_probs=136.4
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
+..+|..+...|.+.|++++|++.|++.. ..++.+|..+...|.+.|++++|+..+.+..... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678888888999999999999888765 3356788888889999999999999999888753 2245566677778
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 421 (605)
+...++.+.+...+...... .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988742 2345778888999999999999999999887 4455 456899999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 007396 422 EIAAKNLFQINSHH 435 (605)
Q Consensus 422 ~~~~~~~~~~~~~~ 435 (605)
+..++++++++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999998864
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=9e-10 Score=107.70 Aligned_cols=215 Identities=10% Similarity=0.067 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 007396 113 EEALFLYNEMFERGVEPDNFTFPALFKACA-------KLQAL-------KEGMQIHGHVFKVGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (605)
++|+.+|++..... +-+...|......+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 223335555554443 23554 6666666666652112244566666666666
Q ss_pred CCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHH-hccCChhhHH
Q 007396 179 CEKVEFASAIFKQMDQ--K-SVA-SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSAC-THLGALDLGK 253 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~-~~~~~~~~a~ 253 (605)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666543 2 222 56666666666666666666666665533 22222332221111 1134444444
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG-LEP 332 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 332 (605)
.+|+..++.. ..+...|..++..+.+.|+.++|..+|++..... +.|
T Consensus 190 ~~~~~al~~~--------------------------------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 190 KIFELGLKKY--------------------------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHHHHHHHH--------------------------------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHHHhC--------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 4444444432 1233445555555555555555555555555532 233
Q ss_pred C--HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 007396 333 D--DVVYVGVLSACSHAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 333 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 362 (605)
+ ...|..++......|+.++|..+++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 33455555555555666666666665553
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=6.2e-09 Score=104.66 Aligned_cols=259 Identities=12% Similarity=0.006 Sum_probs=164.5
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCChh----HHHHHHHHHhccCChhhHHHHHHHHHHhcC---Cc--hHHHHhHHH
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPEES----ILVSVLSACTHLGALDLGKCTHGSLIRNIS---AL--NVIVETSLI 275 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li 275 (605)
..+...|++++|...+++..... -..+.. .+..+...+...|+++.|...+....+... .+ ....+..+.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455666666666666655532 111111 233444455556666666666666554211 11 123345666
Q ss_pred hHHHhcCCHHHHHHHHhccCC-------C----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMAD-------K----CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE--P--DDVVYVGV 340 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~l 340 (605)
..|...|++++|.+.+++... + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777778888888777765431 1 1234556677788888888888888887754221 1 12456677
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHHC-CCCCC-----HHHHHHHH
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYG-----CVVDLMGRAGMLGEALELIQSM-PIQQN-----DVVWRSLL 409 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll 409 (605)
...+...|++++|..++++...-..-......+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7778888999999999888764211111111121 2334577899999999999887 22221 22466777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHH------PSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
..+...|+.++|...++++.+..+.. ...+..++.+|...|+.++|...+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78889999999999999887654321 13667788899999999999999988765
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=3.6e-10 Score=122.52 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=118.5
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVV 377 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 377 (605)
.+|+.+...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|...|++..+ +.| +...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3556666666666777777777776665 3443 45666677777777777777777777663 234 356777777
Q ss_pred HHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHH
Q 007396 378 DLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (605)
.+|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7777778888887777776 44554 458888888888889999999999999999998888888899999999999888
Q ss_pred HHHHHHHHh
Q 007396 456 AKIRTEMAS 464 (605)
Q Consensus 456 ~~~~~~m~~ 464 (605)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=6.4e-09 Score=111.42 Aligned_cols=411 Identities=8% Similarity=-0.011 Sum_probs=276.7
Q ss_pred HHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCC---chHHHHHHHHH
Q 007396 50 VHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVE---FEEALFLYNEM 122 (605)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~l~~~m 122 (605)
.+...++.. +.|...|..++ ... +.+.++.|+.+|+++.. | ....|..-+..-.+.++ ++.+..+|++.
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi---~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLL---KHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCCHHHHHHHH---HHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334444443 35788889999 888 88999999999999865 3 44568888888888888 99999999999
Q ss_pred HHCC-CCCCcchHHHHHHHHHccCCh--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHc---------CCC
Q 007396 123 FERG-VEPDNFTFPALFKACAKLQAL--------KEGMQIHGHVFKV-GF-ECD-LFVQNSLINMYGK---------CEK 181 (605)
Q Consensus 123 ~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~ 181 (605)
+... ..|+...|..-+.-..+.++. +...++|+.++.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8763 137777777766655554443 3455788877654 66 554 5688888776543 345
Q ss_pred HHHHHHHHHhcCC-C--Ch-hHHH---HHHHHHH----------HCCChhHHHHHHHHHHhC--CCCC------------
Q 007396 182 VEFASAIFKQMDQ-K--SV-ASWS---AIIAAHA----------SNGLWSECLKLFGEMNNE--KCWR------------ 230 (605)
Q Consensus 182 ~~~A~~~~~~m~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~~------------ 230 (605)
++.++++|++... | +. ..|. .+..... ...+++.|...+.++... + +.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~-l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKG-LKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHh-Hhhccccccccchh
Confidence 7889999998764 2 11 2332 2222110 011233444455443211 1 11
Q ss_pred ---C--C---h---hHHHHHHHHHhccC-------ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH-HHH
Q 007396 231 ---P--E---E---SILVSVLSACTHLG-------ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL-CLF 291 (605)
Q Consensus 231 ---p--~---~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~f 291 (605)
| + . ..|...+.---..+ ..+....+|++++..- +.+..+|-..+..+.+.|+.++|. ++|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 0 12222332222211 1223456777777654 447788888888888999999996 999
Q ss_pred hccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhcc
Q 007396 292 RMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL---------EPD------------DVVYVGVLSACSHA 347 (605)
Q Consensus 292 ~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~ 347 (605)
++.. ..+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 8765 23455677788888899999999999999986410 142 23577777777788
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-MLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIA 424 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 424 (605)
|.++.|..+|....+.. -.+....|...+.+-.+.| +.+.|..+|+.. ...-+...|...+......|+.+.|..+
T Consensus 448 ~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999998531 1123445554444444554 589999999887 2223556788888888889999999999
Q ss_pred HHHHHhhCCC---CCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 425 AKNLFQINSH---HPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 425 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
|+++.+..|+ ....+...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999998873 345677788888899999999999999988653
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.1e-09 Score=97.63 Aligned_cols=160 Identities=10% Similarity=-0.053 Sum_probs=97.2
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS 345 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 345 (605)
..+..+...|...|++++|.+.|+++.+. +...|..+...+...|++++|...++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------
Confidence 44555666666666666666666665532 23344445555555555555555555554431
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
+.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|++++|..
T Consensus 73 ---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 73 ---------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 123344444455555555555555555544 11 2244566666777777777777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 424 AAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.++++.+..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777777888888888888888887777653
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=7.7e-11 Score=115.00 Aligned_cols=165 Identities=13% Similarity=0.121 Sum_probs=109.4
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh------CC
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFER-------GVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKV------GF 162 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~ 162 (605)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...++.+++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445777888888889999998888888763 12223446777777788888888888888887765 21
Q ss_pred -CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhC----
Q 007396 163 -ECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-------K----SVASWSAIIAAHASNGLWSECLKLFGEMNNE---- 226 (605)
Q Consensus 163 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 226 (605)
.....++..+...|...|++++|.+.|++..+ + ...+|..+...|...|++++|+..|+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22355677777888888888888887776542 1 2335666777777777777777777776553
Q ss_pred --CCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 227 --KCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 227 --g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
+ ..|+ ..++..+...+...|++++|...++.+.+
T Consensus 187 ~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGP-DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1221 23455555556666666666666665554
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=2.3e-08 Score=100.68 Aligned_cols=158 Identities=10% Similarity=0.070 Sum_probs=75.0
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHhccCChhhHHHHHHHHHHhcC-----C-chHHHHhH
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPE----ESILVSVLSACTHLGALDLGKCTHGSLIRNIS-----A-LNVIVETS 273 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 273 (605)
...+...|++++|+..|++....-.-.++ ..++..+...+...|+++.|...+....+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33455667777777777766543101122 22344455555555555555555555443211 0 11334455
Q ss_pred HHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEPDDVVYVGV 340 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l 340 (605)
+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 55555555555555555544321 11 123444445555555555555555554430 111113344444
Q ss_pred HHHHhccCCHHHHHHHHHHhH
Q 007396 341 LSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~ 361 (605)
...+...|+.++|..++++..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 455555555555555555544
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.13 E-value=8.7e-10 Score=114.66 Aligned_cols=210 Identities=12% Similarity=-0.059 Sum_probs=125.9
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 007396 112 FEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL-KEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFK 190 (605)
Q Consensus 112 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (605)
+++++..+++..... +.+...+..+..++...|++ ++|...++++++.... +...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555443321 12334455555555555666 6666666666555422 45555666666666666666666665
Q ss_pred hcCC--CChhHHHHHHHHHHHC---------CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc--------CChhh
Q 007396 191 QMDQ--KSVASWSAIIAAHASN---------GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL--------GALDL 251 (605)
Q Consensus 191 ~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~--------~~~~~ 251 (605)
+..+ |+...|..+...|... |++++|+..|++..+.. +-+...+..+..++... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5432 3445555555566665 66666666666666543 33455566666666665 66777
Q ss_pred HHHHHHHHHHhcCC--chHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 252 GKCTHGSLIRNISA--LNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 252 a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
|...++.+++.... .+...+..+..+|.+.|++++|.+.|++.. ..+...|..+...+...|++++|++.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777766665421 466677777777777788888777777654 224456777777777778887777766544
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=1.9e-09 Score=108.70 Aligned_cols=225 Identities=7% Similarity=-0.066 Sum_probs=167.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcC-----CchHHHHhHHHhHHHhcCCHHHHHHHHhccCC-----CC-----eeeHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNIS-----ALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD-----KC-----QLTYS 303 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~-----~~~~~ 303 (605)
....+...|+++.|...+..+.+... +....++..+...|...|+++.|...+++..+ .+ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455788999999999999986421 12356788899999999999999988876541 11 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCChHHHHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLRE----GLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLE---YRIVPTVQHYGC 375 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~ 375 (605)
.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|..+|++...- .+.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988753 1111 1246778888999999999999999988741 122233677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM----PI--QQN-DVVWRSLLSASKVHHN---LEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ .++|...+++.. ..|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 999999999999999999886 21 222 2345555566677777 667776666521 112234567789999
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 007396 446 YARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~ 464 (605)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=3e-08 Score=99.54 Aligned_cols=259 Identities=10% Similarity=-0.080 Sum_probs=146.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHccCChHHHHHHHHHHHHhCCC-Cc----hhHHHHH
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDNF----TFPALFKACAKLQALKEGMQIHGHVFKVGFE-CD----LFVQNSL 172 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 172 (605)
....+...|++++|...+++........+.. ++..+...+...|++++|...+++.++.... .+ ..+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345667888999999888887753222221 3455556677788888888888887764211 11 2335666
Q ss_pred HHHHHcCCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC--C--ChhHHH
Q 007396 173 INMYGKCEKVEFASAIFKQMDQ-------K----SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWR--P--EESILV 237 (605)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--p--~~~t~~ 237 (605)
...|...|++++|...+++... + ....+..+...+...|++++|...+++..... .. + ...++.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcHHHHHHHH
Confidence 7778888888888887766531 1 12345566677778888888888887766532 11 1 123455
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCch--HHHH-h---HHHhHHHhcCCHHHHHHHHhccCCCCe-------eeHHH
Q 007396 238 SVLSACTHLGALDLGKCTHGSLIRNISALN--VIVE-T---SLIDMYVKCGCLEKGLCLFRMMADKCQ-------LTYSV 304 (605)
Q Consensus 238 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~---~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~~~ 304 (605)
.+...+...|+++.|...++...+....++ .... . ..+..+...|++++|...+++....+. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 556666677777777777776664421111 1111 1 233445667777777777766553321 12344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 305 MISGLAMHGQGKEALSIFSEMLRE----GLEPDDV-VYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|...++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455566666666666666655431 1111111 33333344445555555555554443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=4.5e-09 Score=93.45 Aligned_cols=168 Identities=13% Similarity=0.013 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHH
Q 007396 233 ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGL 309 (605)
Q Consensus 233 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~ 309 (605)
...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677888889999999999999988765 3467889999999999999999999999875 33556777788888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 389 (605)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++.+.... +.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------- 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PN--------------------- 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--cc---------------------
Confidence 88888888888888877642 2344555666666666666666666666665321 11
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 390 LELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 390 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
+...|..+...+...|+.++|...++++.+..|+++
T Consensus 143 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 -----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred -----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 233455555555566666666666666666555443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=2.9e-09 Score=98.92 Aligned_cols=189 Identities=11% Similarity=-0.050 Sum_probs=127.6
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---C-CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---D-KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVL 341 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 341 (605)
|+..+..+...|.+.|++++|...|++.. . ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45667777778888888888888887654 2 4555666677778888888888888888776 34543 4666777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC--H-HHHHHHHH
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPTV-------QHYGCVVDLMGRAGMLGEALELIQSM-PIQQN--D-VVWRSLLS 410 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~-~~~~~ll~ 410 (605)
..+...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ . ..|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 77788888888888888777422 1223 44666667777778888888888776 55665 3 35666666
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 6543 34555666666666554444333 2344566799999999888743
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=3.8e-09 Score=98.08 Aligned_cols=204 Identities=8% Similarity=0.047 Sum_probs=158.4
Q ss_pred CCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHH
Q 007396 230 RPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMI 306 (605)
Q Consensus 230 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li 306 (605)
..|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+. +...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34667888888999999999999999999999886467777777999999999999999999987633 456788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHH
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPD-D-------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT---VQHYGC 375 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 375 (605)
..|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+... ...|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHH
Confidence 9999999999999999999884 444 3 357777788889999999999999988 34565 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PI-QQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
+...|...|+. .++++ .+ ..+...+..+. ....+.+++|...++++.+++|+++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77777665543 23332 11 12333444333 3445668999999999999999988776666554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=5e-09 Score=100.25 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 435 HPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
....+..++.+|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677788888888888888888877664
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=2.6e-09 Score=103.50 Aligned_cols=187 Identities=10% Similarity=0.006 Sum_probs=117.1
Q ss_pred HHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 007396 277 MYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEPD-DVVYVGVLS 342 (605)
Q Consensus 277 ~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~ 342 (605)
.|...|++++|...|++... .+ ..+|+.+...|...|++++|+..|++..+. |-.+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555544321 01 235666666666667777776666665542 11000 246777777
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC---H-----HHHHHH
Q 007396 343 ACSHA-GLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN---D-----VVWRSL 408 (605)
Q Consensus 343 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~l 408 (605)
.|... |++++|...|++...-..-..+ ..++..+...|.+.|++++|.+.|++. ...|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999988887642111111 356778888999999999999999886 22222 1 156777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--HcCChhHHHHHHHHHH
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHPSD-----YVLLSNMYA--RAQRWYDVAKIRTEMA 463 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~ 463 (605)
..++...|+++.|+..+++.++++|..... +..++..|. ..+++++|.+.++.+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 778889999999999999999988874432 344556664 4567888887775543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=8.1e-08 Score=91.11 Aligned_cols=204 Identities=9% Similarity=0.018 Sum_probs=127.7
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---C---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMADK---C---QLTYSVMISGLAMHGQGKEALSIFSEMLREGL-EPD-DVVYV 338 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 338 (605)
+...+-.+...+.+.|++++|...|+.+... + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455555666667777777777777766532 2 23455566667777777777777777666321 112 23444
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Q 007396 339 GVLSACSH--------AGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLL 409 (605)
Q Consensus 339 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 409 (605)
.+..++.. .|++++|...|+.+...+ |+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 666677777666666432 22 11111111110000000 11245667
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARA----------QRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 788999999999999999999999844 4788899999877 899999999999987442
Q ss_pred EECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 007396 477 EVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKF 511 (605)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 511 (605)
.++...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 145567777777777666654
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.92 E-value=2.8e-08 Score=107.76 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=131.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPD-NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
..+|+.|...|.+.|++++|++.|++.++. .|+ ..+|..+..++.+.|++++|.+.|+++++.... +...|+.+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 456888888888999999999999988875 344 457888888888889999999999988888643 6778888888
Q ss_pred HHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh
Q 007396 175 MYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL 251 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~ 251 (605)
+|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHH
Confidence 99999999999988887653 456788888889999999999999999888743 3356778888888888888888
Q ss_pred HHHHHHHHHHh
Q 007396 252 GKCTHGSLIRN 262 (605)
Q Consensus 252 a~~~~~~~~~~ 262 (605)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777653
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=3.7e-07 Score=87.03 Aligned_cols=238 Identities=9% Similarity=0.013 Sum_probs=156.9
Q ss_pred cCCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHH
Q 007396 178 KCEKVEFASAIFKQMDQKSV-ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
-.|.+..+..-...+...+. ..---+.++|...|++... .. -.|....+..+.... ..+ +...+
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DP-TSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CS-SSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CC-CCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 46777777665555543222 2222344677777776642 11 234433333333322 222 56666
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-----CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
+..+..+ .++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6666555 334444557888888999999999999877433 345677788899999999999999999987 46
Q ss_pred C-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC---
Q 007396 332 P-----DDVVYVGVLSAC--SH--AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI--- 398 (605)
Q Consensus 332 p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 398 (605)
| +..+...+..++ .. .++..+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 356666666663 22 34899999999998743 355333344555888999999999998765 21
Q ss_pred -------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 399 -------QQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 399 -------~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.|+. .+...++......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 2544 466567666666776 8899999999999988754
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=1.7e-07 Score=89.39 Aligned_cols=240 Identities=9% Similarity=0.038 Sum_probs=165.8
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
|.-..-.|.+..++.-..++.. ..+ ......+.+++...|++.... ...|.......+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~-~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTD-NTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCC-HHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cch-HHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc-
Confidence 3445567888888874333211 122 234444567777777766421 2233333333333 333322
Q ss_pred HHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007396 284 LEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDR 359 (605)
Q Consensus 284 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 359 (605)
|...|++... ++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+.+.|.+.++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777876653 344556677888999999999999999987655423 345777788899999999999999999
Q ss_pred hHHhcCCCC-----ChHHHHHHHHH--HHh--cCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 360 MKLEYRIVP-----TVQHYGCVVDL--MGR--AGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 360 ~~~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
|.+ ..| +..+...|..+ ... .++..+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.
T Consensus 162 ~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 974 345 24555555555 333 34899999999999 444653444455558899999999999999888
Q ss_pred hh----------CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 430 QI----------NSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 430 ~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+. +|+++.+...++..+...|+ +|.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 76 48888888788877778887 8999999998854
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.88 E-value=9.5e-09 Score=98.28 Aligned_cols=44 Identities=9% Similarity=-0.038 Sum_probs=23.6
Q ss_pred HHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 284 LEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 284 ~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
+..+...++.....+ ..+|..+...|...|++++|..+|++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444322 34567777788888888888888877664
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=5.1e-08 Score=81.26 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=72.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCC
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQ-QNDVVWRSLLSASKVHHN 417 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~ 417 (605)
+...+...|++++|..+|+.+... .+.+...+..+...+...|++++|...++++ ... .+...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444421 1123344444455555555555555555544 111 234456666666777777
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777777777777777777777777777777776653
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=3.1e-08 Score=95.81 Aligned_cols=166 Identities=8% Similarity=-0.100 Sum_probs=93.0
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCCC-----C----eeeHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-CC----
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMADK-----C----QLTYSVMISGLAMH-GQGKEALSIFSEMLREGLE-PD---- 333 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~---- 333 (605)
.+++.+..+|.+.|++++|...|++..+- + ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34455555555555555555555443210 1 23456666667775 7777777777776542110 01
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH----
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-----QHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV---- 403 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---- 403 (605)
..++..+...+...|++++|..+|++......-.+.. ..|..+...+...|++++|...+++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2356667777777788888888777776321111111 14566666777778888888887776 4444322
Q ss_pred --HHHHHHHHHH--hcCChHHHHHHHHHHHhhCCC
Q 007396 404 --VWRSLLSASK--VHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 404 --~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+..++.++. ..+++++|...++++.+++|.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2344455553 345677777777666666554
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=2.9e-07 Score=85.14 Aligned_cols=180 Identities=11% Similarity=0.024 Sum_probs=111.4
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC--CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD--KC----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV----VYV 338 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 338 (605)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445566677778888888888877652 22 135666777778888888888888887764 23321 233
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCCCC
Q 007396 339 GVLSACSH------------------AGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMPIQ 399 (605)
Q Consensus 339 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (605)
.+..++.. .|+.++|...|+.+.+. .|+ ...+.....+ +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34455555555555422 122 1111111000 0000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 400 QNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
......+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445567889999999999999999999865 56889999999999999999999999886643
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=1.6e-07 Score=88.98 Aligned_cols=203 Identities=9% Similarity=-0.007 Sum_probs=142.8
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc--hHHHHhHHHhHHHhcCCHHHHHHHHhccCC--C-C---eeeH
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL--NVIVETSLIDMYVKCGCLEKGLCLFRMMAD--K-C---QLTY 302 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~ 302 (605)
.+...+......+.+.|+++.|...++.+++..... ....+..+...|.+.|++++|...|++..+ | + ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 356677778888899999999999999999875322 167788899999999999999999998763 2 1 3456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007396 303 SVMISGLAM--------HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYG 374 (605)
Q Consensus 303 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 374 (605)
..+..++.. .|++++|+..|++..+. .|+.... ..+...+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHHH
Confidence 777888888 99999999999999874 3443211 1111111111110 012245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCCch-
Q 007396 375 CVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVH----------HNLEIGEIAAKNLFQINSHHPSD- 438 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~~~~- 438 (605)
.+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|+..++++.+..|+++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6677888899999999988886 22333 23666777777755 88999999999999999987643
Q ss_pred --HHHHHHHHHHcCChh
Q 007396 439 --YVLLSNMYARAQRWY 453 (605)
Q Consensus 439 --~~~l~~~~~~~g~~~ 453 (605)
...+..++...|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 344444554444443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.81 E-value=1.9e-07 Score=77.71 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=98.6
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 380 (605)
.|..+...+...|++++|..+|+++.+.. ..+...+..+...+...|++++|..+|+.+... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777778888888888888877643 234566777777788888888888888887742 233566777788888
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++.+.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 2223 4567888888888899999999999998888775
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=1e-07 Score=91.89 Aligned_cols=173 Identities=7% Similarity=-0.057 Sum_probs=130.4
Q ss_pred HHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 007396 286 KGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEY 364 (605)
Q Consensus 286 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 364 (605)
...+.+......+...+..+...+.+.|++++|...|++..+. .| +...+..+...+...|+.++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 3344444444344445666777788888899999999888874 44 446777788888899999999999988763
Q ss_pred CCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchH
Q 007396 365 RIVPTVQHYGCVV-DLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH--PSDY 439 (605)
Q Consensus 365 ~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~ 439 (605)
..|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ...+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 245544333222 2356677778888888776 3445 45688899999999999999999999999999987 7789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 007396 440 VLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
..|+.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887654
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=1.2e-08 Score=87.76 Aligned_cols=140 Identities=5% Similarity=-0.138 Sum_probs=97.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
.+...|++++|+..+++... ..|+. ..+..+...|...|++++|...|++..+. -+-+...|..+...|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34445666777777666543 22322 34555666777777777777777777632 122466777777778888888
Q ss_pred HHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHH-HHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 387 GEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEI-AAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 387 ~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
++|...|++. .+.|+ ...|..+...+...|+.++|.+ .++++.+++|.++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888887776 44554 5578888888888888876555 4688999999998888888888877774
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.71 E-value=1.3e-05 Score=83.06 Aligned_cols=182 Identities=9% Similarity=-0.071 Sum_probs=89.6
Q ss_pred CChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-CcchHHHHHHHHH----ccCChHH
Q 007396 79 GSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVE-FEEALFLYNEMFER-GVEP-DNFTFPALFKACA----KLQALKE 149 (605)
Q Consensus 79 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~ 149 (605)
|+++.+..+|++... |++..|..-+.-..+.+. .+....+|+..... |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 667777777777554 677777777766655553 34556677766553 3323 3344554444332 2345677
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHc-------------CCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHCCC
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGK-------------CEKVEFASAIFKQMD----QKSVASWSAIIAAHASNGL 212 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~ 212 (605)
+..+|+.+++.....-...|......-.. .+.+..|+.+++.+. ..+...|...+.---..+.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 77777777764222111222222111000 011222333332221 1133345444433221110
Q ss_pred -------hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 213 -------WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 213 -------~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
.+.+..+|+++.... +-+...|...+.-+.+.|+.+.|+.+++..++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 233456666666542 444555555555566666777777777777666
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=4e-08 Score=106.89 Aligned_cols=167 Identities=10% Similarity=-0.052 Sum_probs=128.3
Q ss_pred HhcCCHHHHHHHHhccC-----------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 007396 279 VKCGCLEKGLCLFRMMA-----------DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSH 346 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 346 (605)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788888888887765 234567777888888888888898888888874 34 45677777788888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
.|++++|...|++..+. .| +...|..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88899998888888742 34 46777888888888888888 8888776 4445 34578888888888899999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 424 AAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
.++++.+++|.+...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9998888888888888888888866555
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=1.6e-07 Score=83.02 Aligned_cols=154 Identities=11% Similarity=0.015 Sum_probs=89.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhc
Q 007396 306 ISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL-MGRA 383 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 383 (605)
...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...|+..... .|+...+..+... +.+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 33444445555555555444331 22 2234444444555555555555555544421 1222221111111 1111
Q ss_pred CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHcCChhHHHHHH
Q 007396 384 GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH--PSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 384 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+...+|.+.+++. ...| +...+..+..++...|++++|+..++++++.+|.. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555554 3345 45688888888899999999999999999998864 558888999999999999999888
Q ss_pred HHHHh
Q 007396 460 TEMAS 464 (605)
Q Consensus 460 ~~m~~ 464 (605)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=2.6e-07 Score=98.47 Aligned_cols=159 Identities=9% Similarity=-0.017 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 007396 281 CGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLC 356 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 356 (605)
.|++++|.+.|++..+. +...|..+...|.+.|++++|.+.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999987643 4567888999999999999999999999874 44 467888888999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhh
Q 007396 357 FDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVH---HNLEIGEIAAKNLFQI 431 (605)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~ 431 (605)
|++..+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999843 2335788999999999999999999999987 4445 456888899999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 007396 432 NSHHPSDYVLLS 443 (605)
Q Consensus 432 ~~~~~~~~~~l~ 443 (605)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=6.1e-07 Score=95.62 Aligned_cols=147 Identities=9% Similarity=-0.039 Sum_probs=96.3
Q ss_pred cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHH
Q 007396 246 LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 322 (605)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367778888888877664 335677788888888888888888888876532 4567777888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHC
Q 007396 323 SEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA---GMLGEALELIQSM 396 (605)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 396 (605)
++..+.. ..+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8887742 224567777778888888888888888887742 123466777788888888 8888888888776
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=6e-07 Score=97.61 Aligned_cols=189 Identities=12% Similarity=-0.011 Sum_probs=143.4
Q ss_pred hccCChhhHHHHHHHHH--------HhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhc
Q 007396 244 THLGALDLGKCTHGSLI--------RNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMH 312 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 312 (605)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 332 4466778888899999999999999998876 33567888888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 007396 313 GQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALE 391 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 391 (605)
|++++|+..|++..+. .| +...+..+..++...|++++ ...|++..+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999874 45 34677888889999999999 9999998842 12356788899999999999999999
Q ss_pred HHHHC-CCCCCHH-HHHHHHHHHHhcCC-----hHHHHHHHHHHHhhCCCCCch
Q 007396 392 LIQSM-PIQQNDV-VWRSLLSASKVHHN-----LEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 392 ~~~~m-~~~p~~~-~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.|++. ...|+.. .|..+..++...++ .+...++.+.+.+..+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99998 6677754 77777777755554 344445555555555544443
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=2e-06 Score=78.56 Aligned_cols=159 Identities=8% Similarity=-0.087 Sum_probs=99.1
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG----LVNEGLLCFDRMKLEYRIVPTVQHYGC 375 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 375 (605)
..+..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|+.... . -+...+..
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~~ 90 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHHH
Confidence 334444444444555555555555555543 33444445445554 4 66666666666652 2 24455555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 376 VVDLMGR----AGMLGEALELIQSM-PIQQN---DVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 376 li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
|..+|.. .+++++|.++|++. ...|. ...+..|...|.. .++.++|...+++..+. |.++..+..|.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 6666655 56777777777766 33332 5566677777766 67888888888888877 45566778888
Q ss_pred HHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 007396 444 NMYARA-Q-----RWYDVAKIRTEMASKGL 467 (605)
Q Consensus 444 ~~~~~~-g-----~~~~a~~~~~~m~~~~~ 467 (605)
.+|... | ++++|.+.+++..+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888754 3 78888888888877663
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=3e-06 Score=87.97 Aligned_cols=358 Identities=7% Similarity=-0.041 Sum_probs=211.3
Q ss_pred CCC-ChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC-hHHHHH
Q 007396 77 HWG-SMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA-LKEGMQ 152 (605)
Q Consensus 77 ~~g-~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~ 152 (605)
+.| +++.|+.+|+++.. |. |+++.+..+|++.... .|+...|..-++-..+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 37788888877643 33 7899999999999874 5788888888877766663 456778
Q ss_pred HHHHHHHh-CCCC-chhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-C--Ch-hHHHHHHHHHH-------------H
Q 007396 153 IHGHVFKV-GFEC-DLFVQNSLINMYGK----CEKVEFASAIFKQMDQ-K--SV-ASWSAIIAAHA-------------S 209 (605)
Q Consensus 153 ~~~~~~~~-g~~~-~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~--~~-~~~~~li~~~~-------------~ 209 (605)
+|+.++.. |..+ +..+|...+..+.. .|+++.++++|++... | +. ..|......-. .
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88888775 5433 66788888776543 4678899999998753 2 11 12222211100 1
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc--CC-----hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC
Q 007396 210 NGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL--GA-----LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 282 (605)
.+.+..|..+++++...- -..+...|...+.--... +- .+.+..+++.++... +.+..+|...+..+.+.|
T Consensus 150 ~~~y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 122333444454443310 001222343333322211 11 234567888887754 445778888888888999
Q ss_pred CHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHhccCCH
Q 007396 283 CLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG---------LEP---DDVVYVGVLSACSHAGLV 350 (605)
Q Consensus 283 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~ll~a~~~~g~~ 350 (605)
+.+.|..+|++.... +.... +--.|+.....++. ++.+.+.- ..+ ....|...+....+.+..
T Consensus 228 ~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp CHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 999999999865433 22211 11123332221222 22222210 011 113455666666667789
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-MLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 427 (605)
+.|..+|+.. +..+ .+...|.....+-.+.| +.+.|..+|+.. ...-+...|...+.-....|+.+.|..+|++
T Consensus 303 ~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 303 ELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988 3222 24445544333333334 689999999876 2212344566677777888999999999998
Q ss_pred HHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 428 LFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+ +.....+...+..-...|+.+.+.++++++.+
T Consensus 380 ~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 380 L----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp S----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 23445666677666778999999998887764
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.62 E-value=6.1e-07 Score=81.75 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=96.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCCChh-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh
Q 007396 202 AIIAAHASNGLWSECLKLFGEMNNEKCWRPEES-ILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK 280 (605)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 280 (605)
.....+...|++++|+..|++.... .|+.. .+.. . . ... .........+.+...|.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~-~-~---~~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYW-T-N---VDK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHH-H-H---SCT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH-h-h---hcc--------------hhhhhHHHHHHHHHHHHH
Confidence 3445566777777777777777663 34322 2211 0 0 000 001112233446666777
Q ss_pred cCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCC--HHHHH
Q 007396 281 CGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGL--VNEGL 354 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 354 (605)
.|++++|...|++.. ..++..|..+...|...|++++|+..|++..+. .|+ ..++..+...+...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 777777777776654 234556677777777777777777777777663 343 4455556555544433 23334
Q ss_pred HHHHHhHHhcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007396 355 LCFDRMKLEYRIVPTVQ--HYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLS 410 (605)
Q Consensus 355 ~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 410 (605)
..++... .|+.. .+..+...+...|++++|...|++. ...|+......+..
T Consensus 145 ~~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 145 TDYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444332 23322 2233344455567777777777765 56676555444433
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=2.6e-07 Score=79.18 Aligned_cols=97 Identities=7% Similarity=-0.044 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++.+++|+++..|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456777778888999999999999887 4455 46689999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=8e-07 Score=86.50 Aligned_cols=102 Identities=6% Similarity=-0.074 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCC---CCC-ChhHHHHHHHHHhccCChhhHHHH
Q 007396 180 EKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKC---WRP-EESILVSVLSACTHLGALDLGKCT 255 (605)
Q Consensus 180 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~p-~~~t~~~ll~a~~~~~~~~~a~~~ 255 (605)
+++++|...|++. ...|...|++++|...|.+...... -.+ -..+|..+...+...|++++|...
T Consensus 30 ~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 98 (307)
T 2ifu_A 30 PDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98 (307)
T ss_dssp CCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred CCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555442 3445556666666666655443210 000 123445555555566666666666
Q ss_pred HHHHHHhcC---Cc--hHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 256 HGSLIRNIS---AL--NVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 256 ~~~~~~~~~---~~--~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
++..++.-. .+ ...+++.+...|.+ |++++|+..|++
T Consensus 99 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 99 IEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 655543210 00 12334444444444 555555554443
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.59 E-value=5.2e-08 Score=83.73 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=100.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCC
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHN 417 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 417 (605)
...+...|++++|...+.... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566788999999988776 23343 345567889999999999999999987 5556 45699999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH-HHHHHhC
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI-RTEMASK 465 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 465 (605)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5777663
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=1.5e-06 Score=83.52 Aligned_cols=161 Identities=6% Similarity=-0.019 Sum_probs=112.1
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHH-HHHHH
Q 007396 130 DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWS-AIIAA 206 (605)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~-~li~~ 206 (605)
+...+..+...+...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++... |+...+. .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3445666677777888888888888888887644 667788888888888888888888888864 4433222 22233
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-hHHHHhHHHhHHHhcCCHH
Q 007396 207 HASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL-NVIVETSLIDMYVKCGCLE 285 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~ 285 (605)
+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++..... +...+..++..|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 666777888888888877754 4456666677777777777777777777777665332 2556666777777777666
Q ss_pred HHHHHHhc
Q 007396 286 KGLCLFRM 293 (605)
Q Consensus 286 ~A~~~f~~ 293 (605)
+|...|++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66666553
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=1.2e-06 Score=85.32 Aligned_cols=219 Identities=10% Similarity=-0.001 Sum_probs=149.2
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHH
Q 007396 210 NGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLC 289 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 289 (605)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 567888999998877632 211 0 11135666666655543 456777888888888
Q ss_pred HHhccCCC-----C----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCCHHHHHH
Q 007396 290 LFRMMADK-----C----QLTYSVMISGLAMHGQGKEALSIFSEMLREG---LEPD--DVVYVGVLSACSHAGLVNEGLL 355 (605)
Q Consensus 290 ~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 355 (605)
.|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77765311 1 3467788888999999999999998876531 1121 2467778888888 99999999
Q ss_pred HHHHhHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC---CCC---H-HHHHHHHHHHHhcCChHHHHH
Q 007396 356 CFDRMKLEYRIVP----TVQHYGCVVDLMGRAGMLGEALELIQSM-PI---QQN---D-VVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 356 ~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~---~-~~~~~ll~a~~~~g~~~~a~~ 423 (605)
.|++...-..-.. ...++..+...|.+.|++++|.+.|++. .+ .++ . ..+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998774221111 1467888899999999999999999886 11 122 1 256666677788899999999
Q ss_pred HHHHHHhhCCCCCch-----HHHHHHHHHHcCChhHHHH
Q 007396 424 AAKNLFQINSHHPSD-----YVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~ 457 (605)
.+++.+ ..|..... ...++..| ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88864432 33455555 5677666555
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=4.8e-07 Score=77.43 Aligned_cols=98 Identities=6% Similarity=-0.034 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456667788888999999999999887 3445 5668888999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 007396 447 ARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999987643
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=2.1e-06 Score=78.25 Aligned_cols=125 Identities=10% Similarity=-0.027 Sum_probs=101.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKV 414 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~ 414 (605)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556667788888888777653 457777888888888888888888888776 3334 45688888889999
Q ss_pred cCChHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 415 HHNLEIGEIAAKNLFQINSHHP----------------SDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.|++++|+..++++.+..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 789999999999999999999999998754
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.53 E-value=2.5e-06 Score=77.59 Aligned_cols=178 Identities=8% Similarity=-0.012 Sum_probs=99.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHH
Q 007396 137 LFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 216 (605)
....+...|++++|...++.+++..+. +...+.. ....... ......++.+...|.+.|++++|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-----~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A 73 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYW-----TNVDKNS----------EISSKLATELALAYKKNRNYDKA 73 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHH-----HHSCTTS----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHH-----hhhcchh----------hhhHHHHHHHHHHHHHCCCHHHH
Confidence 334455667777777777777766321 1222211 0000000 00111233467777888888888
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC--HHHHHHHHhcc
Q 007396 217 LKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC--LEKGLCLFRMM 294 (605)
Q Consensus 217 ~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--~~~A~~~f~~m 294 (605)
+..|++..+.. +-+...+..+..++...|+++.|...++.+++.. +.+..++..+...|...|+ .+.+...|+..
T Consensus 74 ~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 74 YLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88888877743 3355666777777777777777777777777765 3356666667766655443 34455556555
Q ss_pred CCCCee--eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007396 295 ADKCQL--TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV 335 (605)
Q Consensus 295 ~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (605)
..++.. .|..+..++...|++++|...|++..+ +.|+..
T Consensus 151 ~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 544432 223334445556666677777766665 455543
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.52 E-value=1.6e-06 Score=79.96 Aligned_cols=184 Identities=14% Similarity=0.014 Sum_probs=130.1
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc--hHHHHhHHHhHHHhcCCHHHHHHHHhccCC--CC-ee---eHH
Q 007396 232 EESILVSVLSACTHLGALDLGKCTHGSLIRNISAL--NVIVETSLIDMYVKCGCLEKGLCLFRMMAD--KC-QL---TYS 303 (605)
Q Consensus 232 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~---~~~ 303 (605)
+...+......+.+.|+++.|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+ .. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666777889999999999999999875432 245778889999999999999999998763 32 21 344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 007396 304 VMISGLAM------------------HGQGKEALSIFSEMLREGLEPDDVV-YVGVLSACSHAGLVNEGLLCFDRMKLEY 364 (605)
Q Consensus 304 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 364 (605)
.+..++.. .|+.++|+..|+++.+. .|+... ...... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 45555543 57899999999999874 455432 111110 001111111
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 365 RIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
.....+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++++....|++.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12234667788999999999999887 333442 3688888899999999999999999998888754
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=1.7e-05 Score=76.14 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC-----
Q 007396 313 GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN--EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM----- 385 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 385 (605)
+++++++++++++.+... -|...|..-.-.+.+.|..+ ++.++++.+.+. . .-|-..|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhh
Confidence 445555555555554321 13344444444444444444 555555555531 1 1233344433334444443
Q ss_pred -HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChH-HHHHHHHHHHhhC---CCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 386 -LGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLE-IGEIAAKNLFQIN---SHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 386 -~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~-~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
++++++.++++ ...| |...|+-+-..+...|+.. ....+.+++.+++ |.++.....++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55566665554 2233 4456666666665555532 2444555555544 55556666666677666777777777
Q ss_pred HHHHHh
Q 007396 459 RTEMAS 464 (605)
Q Consensus 459 ~~~m~~ 464 (605)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=4.4e-06 Score=76.25 Aligned_cols=171 Identities=11% Similarity=-0.017 Sum_probs=115.4
Q ss_pred HHHHHhhcCC-CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccC----ChHHHHHHHHHHH
Q 007396 84 ACSIFRQIDE-PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQ----ALKEGMQIHGHVF 158 (605)
Q Consensus 84 A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 158 (605)
|.+.|.+..+ .+..++..|-..|...+++++|+..|++..+.| +...+..+...+.. + +.++|...++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544332 466677777777777788888888888877765 44556666666665 5 7888888888877
Q ss_pred HhCCCCchhHHHHHHHHHHc----CCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----CCChhHHHHHHHHHHh
Q 007396 159 KVGFECDLFVQNSLINMYGK----CEKVEFASAIFKQMDQKS-----VASWSAIIAAHAS----NGLWSECLKLFGEMNN 225 (605)
Q Consensus 159 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 225 (605)
+.| +...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 665 55667777777776 677888888887776543 4677777777777 6778888888887766
Q ss_pred CCCCCCChhHHHHHHHHHhcc-C-----ChhhHHHHHHHHHHhcC
Q 007396 226 EKCWRPEESILVSVLSACTHL-G-----ALDLGKCTHGSLIRNIS 264 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~-~-----~~~~a~~~~~~~~~~~~ 264 (605)
.+ .+...+..+...+... | +.++|...++...+.|.
T Consensus 158 ~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 LS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 42 2333455555555332 2 67777777777777764
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.48 E-value=1.6e-06 Score=76.50 Aligned_cols=151 Identities=13% Similarity=0.024 Sum_probs=78.6
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHH-HhccC
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSA-CTHLG 247 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a-~~~~~ 247 (605)
+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.......... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhc
Confidence 34445555555555555555542 23445555555555555555555555555442 2232221111101 11111
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC-----eeeHHHHHHHHHhcCCHHHHHHHH
Q 007396 248 ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC-----QLTYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~~~ 322 (605)
....+...++..++.. +.+...+..+...|.+.|++++|...|+++.+.+ ...|..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455555555543 2245566666666777777777777776654322 235666667777777777777777
Q ss_pred HHHH
Q 007396 323 SEML 326 (605)
Q Consensus 323 ~~m~ 326 (605)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=9e-06 Score=78.36 Aligned_cols=160 Identities=10% Similarity=0.021 Sum_probs=112.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGL-EPDDV----VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGC 375 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 375 (605)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+.......-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888887765321 22211 2334555666777888888888887742111222 236778
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-------CC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-------PI-QQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYV 440 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-------~~-~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 440 (605)
+...|...|++++|.+.++++ +. .+.. .++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888877765 11 1222 278888889999999999999999998775332 46788
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHh
Q 007396 441 LLSNMYARAQR-WYDVAKIRTEMAS 464 (605)
Q Consensus 441 ~l~~~~~~~g~-~~~a~~~~~~m~~ 464 (605)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999887754
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=4.8e-05 Score=73.09 Aligned_cols=225 Identities=9% Similarity=-0.029 Sum_probs=153.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHhccC--ChhhHHHHHHHHHHhcCCchHHHHhHHHhHH----Hhc---
Q 007396 212 LWSECLKLFGEMNNEKCWRPEE-SILVSVLSACTHLG--ALDLGKCTHGSLIRNISALNVIVETSLIDMY----VKC--- 281 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~~-~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~--- 281 (605)
..++|+.+++++... .|+. ..++.--.++...+ +++++...++.++...+ -+..+|+.--..+ .+.
T Consensus 48 ~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 335666666666663 3433 33444444445555 66666666666666542 2444454444444 444
Q ss_pred CCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------H
Q 007396 282 GCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGK--EALSIFSEMLREGLEPDDVVYVGVLSACSHAGL------V 350 (605)
Q Consensus 282 g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 350 (605)
+++++++++++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 67888888888776 345567777777777788877 999999999886433 56667666666666665 8
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHC-CC----CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGE-ALELIQSM-PI----QQNDVVWRSLLSASKVHHNLEIGEIA 424 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~a~~~~g~~~~a~~~ 424 (605)
+++.++++.+... -+-|...|+.+-.++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8899999888842 23467788888888888887544 55677765 22 23567889999999999999999999
Q ss_pred HHHHHh-hCCCCCchHHHHH
Q 007396 425 AKNLFQ-INSHHPSDYVLLS 443 (605)
Q Consensus 425 ~~~~~~-~~~~~~~~~~~l~ 443 (605)
++.+.+ .+|.+...+...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 999996 7887666655443
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=4e-06 Score=80.85 Aligned_cols=162 Identities=9% Similarity=-0.025 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--hHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDD-----VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI--VPT--VQHY 373 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~ 373 (605)
...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++.......- .+. ...|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33455667777777777777776654222111 12333445566778888888888877632111 111 3477
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCch
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM----PIQQN-----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPSD 438 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 438 (605)
+.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...++++++..+. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 78888888888888888888765 11222 247888888999999999999999998876432 1457
Q ss_pred HHHHHHHHHHcCChhHH-HHHHHHHHh
Q 007396 439 YVLLSNMYARAQRWYDV-AKIRTEMAS 464 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a-~~~~~~m~~ 464 (605)
|..++.+|.+.|++++| ...+++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88899999999999999 777776653
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.46 E-value=4.5e-06 Score=75.97 Aligned_cols=92 Identities=10% Similarity=-0.118 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
+..+...|...|++++|.+.|++...++...|..+...|.+.|++++|+..|++..... +.+...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence 44556667778888888888888777777778888888888888888888888777643 3345555566666666666
Q ss_pred hhhHHHHHHHHHHh
Q 007396 249 LDLGKCTHGSLIRN 262 (605)
Q Consensus 249 ~~~a~~~~~~~~~~ 262 (605)
++.|...++.+.+.
T Consensus 87 ~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666553
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=2e-06 Score=72.86 Aligned_cols=97 Identities=7% Similarity=-0.068 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556677788889999999998886 3345 56688888889999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.++...+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=4.3e-06 Score=72.49 Aligned_cols=127 Identities=8% Similarity=-0.038 Sum_probs=96.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
.+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666667777777777777777632 1234667777777888888888888888776 3334 4568888888999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHH--HHHHHHHcCChhHHHHHHHHHHh
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVL--LSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
..|++++|...++++.+..|.+...+.. ++..+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988877744 44448888999999999887653
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.45 E-value=1.8e-06 Score=71.40 Aligned_cols=106 Identities=6% Similarity=-0.051 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~ 413 (605)
.+......+.+.|++++|...|++..+. -+.+...|..+...|.+.|++++|.+.+++. .+.|+ ...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444555555566666666666555521 1223455555555555666666666555554 23332 345666666666
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
..|++++|+..++++++++|+++..+..|.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 666666666666666666666655544443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.45 E-value=1.4e-06 Score=72.18 Aligned_cols=101 Identities=9% Similarity=0.096 Sum_probs=89.1
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 007396 366 IVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLL 442 (605)
Q Consensus 366 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 442 (605)
+.|+ ...+.-....|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 356677888999999999999999987 4455 566899999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC
Q 007396 443 SNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.+|...|++++|.+.+++..+.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998743
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.43 E-value=5.2e-06 Score=67.75 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|..+|+.+... .+.+...+..+...+.+.|++++|...++++ ...| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45556666667777777777777776632 1234566667777777777777777777766 2223 456777888888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
...|++++|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888999999998888888888887777777766543
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.38 E-value=1.8e-06 Score=85.17 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...|..+...|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|.+...+..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 367788888888999999999988887 4445 46688899999999999999999999999999999999999999999
Q ss_pred HcCChhHH-HHHHHHHH
Q 007396 448 RAQRWYDV-AKIRTEMA 463 (605)
Q Consensus 448 ~~g~~~~a-~~~~~~m~ 463 (605)
..|++++| .++++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44566554
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=5.6e-06 Score=68.17 Aligned_cols=116 Identities=5% Similarity=-0.095 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666677777777777777777632 1235666777777778888888888887776 3334 456788888888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998888888888888888765
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=5.5e-06 Score=68.63 Aligned_cols=115 Identities=7% Similarity=-0.030 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|...|+.... -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555566666666666666666552 11224555666666666667777776666665 2233 455777777788
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
...|++++|...++++.+.+|.+...+..+..++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888776654
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=1.6e-05 Score=76.55 Aligned_cols=164 Identities=9% Similarity=-0.053 Sum_probs=120.2
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCC---Ce------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQ------LTYSVMISGLAMHGQGKEALSIFSEMLREGL---EPD-- 333 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-- 333 (605)
...+...+..|...|++++|.+.++...+. .. ..+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778888999999999988755421 11 1234455667888999999999999875322 122
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHC-C------CCCC
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-----VQHYGCVVDLMGRAGMLGEALELIQSM-P------IQQN 401 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p~ 401 (605)
..+++.+...|...|++++|..+|++...-....|+ ...|..+...|.+.|++++|.+.+++. . ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888889999999999999999988732122222 257888899999999999999999876 1 1111
Q ss_pred -HHHHHHHHHHHHhcCChHHH-HHHHHHHHhh
Q 007396 402 -DVVWRSLLSASKVHHNLEIG-EIAAKNLFQI 431 (605)
Q Consensus 402 -~~~~~~ll~a~~~~g~~~~a-~~~~~~~~~~ 431 (605)
..+|..+...+...|+.++| ...++++..+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45788888899999999999 7778887654
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=9.9e-07 Score=84.59 Aligned_cols=190 Identities=9% Similarity=-0.061 Sum_probs=107.9
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSA 343 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 343 (605)
...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444555566666666666666666543 224455666666666777777777777766653 33 34556666667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+...|++++|...|+...+. .|+. ..+...+....+.+....... .......++......+ ..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence 77777777777777665531 1110 001111111111111111111 2222223333333333 2222 57888999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHhC
Q 007396 423 IAAKNLFQINSHHPSDYVLLSNMYARA-QRWYDVAKIRTEMASK 465 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 465 (605)
+.++++.+.+|.+......+...+.+. +++++|.++|+.+.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999998888888776666777777776 7788999999887653
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.32 E-value=3.5e-06 Score=79.19 Aligned_cols=131 Identities=10% Similarity=-0.041 Sum_probs=86.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHh
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT--VQHYGCVVDLMGR 382 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 382 (605)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHHH
Confidence 455666777777777777776653 35444444445567777888888888875542 11 111 2356667777888
Q ss_pred cCCHHHHHHHHHHC---CCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 383 AGMLGEALELIQSM---PIQQN-D-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 383 ~g~~~~A~~~~~~m---~~~p~-~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
.|++++|++.|++. +..|. . ..+..+..++...|+.++|...|+++...+|. +..+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 88888888888876 22143 2 25666667788888888888888888888886 44433
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.31 E-value=5.9e-05 Score=72.55 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChh----HHHHHHHHHhccCChhhHHHHHHHHHHhcCC-ch----HHHHhH
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEES----ILVSVLSACTHLGALDLGKCTHGSLIRNISA-LN----VIVETS 273 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 273 (605)
.+..+...|++++|..++++........|+.. .+..+...+...++++.|...+..+.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777777777777777765321112211 1112333444445555555555555542211 11 224555
Q ss_pred HHhHHHhcCCHHHHHHHHhcc
Q 007396 274 LIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m 294 (605)
+...|...|++++|...|+++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555443
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=4e-06 Score=75.49 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=21.5
Q ss_pred CCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 179 CEKVEFASA---IFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 179 ~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222233445555555555555555555555544
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=6.9e-06 Score=67.69 Aligned_cols=96 Identities=5% Similarity=-0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566667778888888888888776 3344 456888888889999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 007396 449 AQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~ 466 (605)
.|++++|.+.+++..+.+
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 999999999998887643
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=2.9e-06 Score=69.63 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..++++++++|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667788899999999999887 4455 5668888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 007396 450 QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 450 g~~~~a~~~~~~m~~~~ 466 (605)
|++++|...+++..+.+
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999988754
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=3.7e-06 Score=74.13 Aligned_cols=119 Identities=6% Similarity=0.028 Sum_probs=82.0
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHH-HHhcCCh--HH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSA-SKVHHNL--EI 420 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a-~~~~g~~--~~ 420 (605)
..|++++|...++..... -+.+...|..+...|...|++++|.+.|++. ...| +...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666666666665532 1234566666677777777777777777665 2223 44566667777 6677887 88
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|...++++.+.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888887754
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=1.5e-05 Score=66.52 Aligned_cols=99 Identities=8% Similarity=-0.019 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 368 PTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
.+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|+++.|...++++.+.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777778888888888888888776 3334 456888888888999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhCC
Q 007396 446 YARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|...|++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887643
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=7.5e-06 Score=65.34 Aligned_cols=97 Identities=9% Similarity=0.025 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--HPSDYVLLSNM 445 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 445 (605)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344556666677777777777777765 2223 4557777888888888888888888888888888 88888888888
Q ss_pred HHHc-CChhHHHHHHHHHHhCC
Q 007396 446 YARA-QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 446 ~~~~-g~~~~a~~~~~~m~~~~ 466 (605)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888887654
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=6.8e-06 Score=71.40 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666655 2333 34466666666777777777777777777777777777777777777
Q ss_pred HcCChhHHHHHHHHHHhC
Q 007396 448 RAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~ 465 (605)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777766653
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=1.6e-05 Score=64.70 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567788889999999999999999987 3333 56688999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988643
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.20 E-value=1.1e-05 Score=72.54 Aligned_cols=62 Identities=16% Similarity=0.069 Sum_probs=27.3
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
..+..+...+...|++++|...+++.... |..| ....+..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555555444331 1111 11234444444455555555555554443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=1.5e-05 Score=65.91 Aligned_cols=99 Identities=4% Similarity=-0.008 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 368 PTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++.+..|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888899999999999999999987 5555 566888999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhCC
Q 007396 446 YARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987643
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=1.8e-05 Score=63.75 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+.+|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555556666666666666666665 2223 445666666677777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhC
Q 007396 449 AQRWYDVAKIRTEMASK 465 (605)
Q Consensus 449 ~g~~~~a~~~~~~m~~~ 465 (605)
.|++++|.+.++...+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777777776654
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.18 E-value=8.3e-06 Score=76.63 Aligned_cols=182 Identities=7% Similarity=-0.061 Sum_probs=128.3
Q ss_pred hcCCHHHHHHHHhccCCC---CeeeHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 007396 280 KCGCLEKGLCLFRMMADK---CQLTYSVM-------ISGLAMHGQGKEALSIFSEMLREGLEPDD--------------- 334 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~---~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 334 (605)
..++.+.|.+.|.+.... ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 456777777777766522 23466665 3444444445555554444433 33322
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCH----H
Q 007396 335 -------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQND----V 403 (605)
Q Consensus 335 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 403 (605)
.....+...+...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455677889999999999998873 2354435566667889999999999999977433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQIN--SH-HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|..+|+++...+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788889999999999999999998543 33 34467789999999999999999999998743
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2.5e-05 Score=66.03 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|+..++++.+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455555666666666666666666665 44555 346666666677777777777777777777777666777777
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 007396 444 NMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777766653
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=8.8e-06 Score=77.89 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhc-CCHHHHHHHHHHC
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRA-GMLGEALELIQSM 396 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m 396 (605)
.|+.++|.+.++... ...|+. .....+...+.+. +.+++|.++|.+.
T Consensus 148 ~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466667766666555 233432 3333333444444 5677788888776
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=1.4e-05 Score=71.83 Aligned_cols=170 Identities=9% Similarity=-0.050 Sum_probs=97.3
Q ss_pred hHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNE 352 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 352 (605)
......|+++++.+.++..... ....|..+...+...|++++|+..|++..+. .|+...+... ..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 3334445555555555433211 2334555666666677777777777766653 2221100000 0000
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
- -.. .....|..+...|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++
T Consensus 82 ~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 K---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 000 01256667777888888888888888776 3344 456888888899999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHcCChhHHH-HHHHHHHhCC
Q 007396 431 INSHHPSDYVLLSNMYARAQRWYDVA-KIRTEMASKG 466 (605)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 466 (605)
++|.++..+..+..++...|+.+++. ..+..|..++
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999888887776 5555554433
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=2.7e-05 Score=67.26 Aligned_cols=91 Identities=5% Similarity=-0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMY 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 278 (605)
.|..+...+...|++++|...|++..... +.+...+..+...+...|+++.|...+....+.. +.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44555555555666666666666555432 2233444444444444444444444444444432 12233333344444
Q ss_pred HhcCCHHHHHHHHh
Q 007396 279 VKCGCLEKGLCLFR 292 (605)
Q Consensus 279 ~~~g~~~~A~~~f~ 292 (605)
.+.|++++|.+.|+
T Consensus 92 ~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 92 MALGKFRAALRDYE 105 (166)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHH
Confidence 44444444444443
No 151
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.14 E-value=9.2e-06 Score=69.39 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
..|..+...+.+.|++++|+..|++...
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~ 64 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI 64 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555556666666666655555
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.14 E-value=8.9e-06 Score=69.36 Aligned_cols=108 Identities=7% Similarity=-0.070 Sum_probs=82.3
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHH
Q 007396 330 LEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWR 406 (605)
Q Consensus 330 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 406 (605)
+.|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34433 35566667778888888888888887742 1335677778888888889999998888886 3344 455788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.+..++...|++++|+..+++++++.|.++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888899999999999999999999988876553
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.13 E-value=1.6e-05 Score=69.87 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=95.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCH--
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL-MGRAGML-- 386 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 386 (605)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+...... +.+...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877642 2355677888888888999999999998887422 2356677777777 7788988
Q ss_pred HHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 387 GEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 387 ~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
++|...+++. ...|+ ...|..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998887 33454 56888888899999999999999999999999876543
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.12 E-value=4.6e-05 Score=61.18 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455556666667777777777766632 1224566666677777777777777777665 2333 455777777888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
...|++++|...++++.+.+|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888888777666555544
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=0.00077 Score=65.44 Aligned_cols=174 Identities=11% Similarity=-0.037 Sum_probs=101.6
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccC-ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc-
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLG-ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC- 281 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~- 281 (605)
....+.+..++|+++++++... .|+ ...++.--..+...+ .++++..+++.++... +.+..+|+.-...+.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 3334445556777777777764 343 333444444444455 4677777777776655 33566666666666665
Q ss_pred C-CHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 007396 282 G-CLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGK--------EALSIFSEMLREGLEPDDVVYVGVLSACSHAGL 349 (605)
Q Consensus 282 g-~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 349 (605)
+ ++++++++++.+.+.| ..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccc
Confidence 5 6778888888777544 345555444444444444 77777777777532 255666666666666554
Q ss_pred -------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 350 -------VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 350 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
++++.++++.+... -+-|...|+.+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56666666666631 12345556555555555554
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=6.3e-05 Score=63.43 Aligned_cols=110 Identities=7% Similarity=-0.110 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRS 407 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 407 (605)
...+..+...+...|++++|...|+... ...|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555666666666666666655 22344 455666666677777777777777665 3334 4557777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+..++...|++++|...++++.+.+|.+...+..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 788888888999999999999888888776665555443
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.09 E-value=1.1e-05 Score=66.63 Aligned_cols=93 Identities=3% Similarity=-0.082 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hHHHH
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS-------DYVLL 442 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l 442 (605)
.+.-+...+.+.|++++|++.|++. .+.|+ ...|..+..+|...|++++|+..++++++++|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455666677777777777777765 34443 457777888888888888888888888887766443 56667
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 007396 443 SNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888887765
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00056 Score=66.08 Aligned_cols=193 Identities=9% Similarity=-0.037 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC--CHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCC-HHHHHHHH
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG--CLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQ-GKEALSIF 322 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 322 (605)
++.+..+++.+.... +-+..+|+.-...+.+.| ++++++.+++.+. .+|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445556666666554 335666666666666666 3677777777665 3345566666656666666 47777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-----
Q 007396 323 SEMLREGLEPDDVVYVGVLSACSHA--------------GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA----- 383 (605)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 383 (605)
.++.+..+. |...|+.....+.+. +.++++.+++...... -+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 777765322 444554444333332 3466677777766631 123455555554444444
Q ss_pred ------CCHHHHHHHHHHC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 384 ------GMLGEALELIQSM-PIQQNDVVWRSLLSA-----SKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 384 ------g~~~~A~~~~~~m-~~~p~~~~~~~ll~a-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+.++++++.++++ ...||. .|..+-.+ ....|..++....+.++.+++|...+-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3466777777666 445654 34322221 12346666777778888888877666665554433
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.08 E-value=3.6e-05 Score=63.16 Aligned_cols=98 Identities=7% Similarity=0.001 Sum_probs=87.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567778888999999999999999987 3334 5668888999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 007396 447 ARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|.+.+++..+.+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.08 E-value=2e-05 Score=66.55 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
.+..+...+...|++++|...|+..... -+.+...|..+...|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556677778888888888877732 1235667777778888888888888888776 3334 3457778888889
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLL 442 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 442 (605)
..|++++|...+++++++.|.++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999988777655443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.07 E-value=3.5e-05 Score=66.77 Aligned_cols=108 Identities=9% Similarity=-0.056 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSA 411 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a 411 (605)
...+..+...+...|++++|...|+...+. .+.+...|..+...|.+.|++++|.+.|++. .+.|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666667777788888888888877742 1235677778888888888888888888876 44454 5688899999
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+...|++++|+..++++++++|+++..+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999888654443
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.8e-05 Score=63.90 Aligned_cols=108 Identities=7% Similarity=-0.108 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~ 413 (605)
.+..+...+...|++++|...|+...+. .+.+...|..+...|.+.|++++|.+.+++. ...|+ ...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666677777777777766632 1234566777777777777777777777765 33443 557777888888
Q ss_pred hcCChHHHHHHHHHHHhhC------CCCCchHHHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQIN------SHHPSDYVLLSNM 445 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 445 (605)
..|++++|...++++++++ |.+......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888888 6655555544443
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.07 E-value=0.0018 Score=62.91 Aligned_cols=174 Identities=13% Similarity=0.017 Sum_probs=123.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC-C
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQ-ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC-E 180 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g 180 (605)
....+.+..++|+++++.++.. .|+.. .|+.--..+...+ ++++++.+++.+++..++ +..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 3344455667899999999885 45544 4666666666677 599999999999988755 777888777777766 6
Q ss_pred -CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChh--------HHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 181 -KVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWS--------ECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 181 -~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
+.++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...++.-.....+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccc
Confidence 888999999988764 5567776555555555555 8899999888865 5567777777777666665
Q ss_pred -------hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 249 -------LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 249 -------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
++++.+....++... +-|...|+-+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 466666666666665 4466777666666666554
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.01 E-value=6e-05 Score=65.13 Aligned_cols=64 Identities=5% Similarity=-0.026 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...|..+..++...|+++.|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3478888888899999999999999999999999999999999999999999999999888764
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=8.2e-05 Score=75.86 Aligned_cols=163 Identities=6% Similarity=-0.113 Sum_probs=108.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCC-hHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREG-LEPDDV----VYVGVLSACSHAGLVNEGLLCFDRMKLE---YRIVPT-VQH 372 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 372 (605)
+..+...|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+++..++...... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567777888888888888877765421 112221 2222233344567888888887776531 122222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC---CC----Cc
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS---HH----PS 437 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~----~~ 437 (605)
+..+...|...|++++|..++++. .-+|. ..++..++..|...|++++|...++++....+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888888999999998888765 11232 23777888889999999999999988876532 21 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.+..++..+...|++++|.+.+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677778888999999887776643
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=3.2e-05 Score=65.58 Aligned_cols=62 Identities=8% Similarity=-0.053 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQI-------NSHHPSDY----VLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888999999999999999999999 99988888 99999999999999999999988763
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=3.6e-05 Score=63.35 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLLSNMYA 447 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 447 (605)
+...+.+.|++++|.+.|++. ...|+. ..+..+..++...|++++|...++++.+..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344556667777777766665 222322 356666667777788888888888887777776 556777777888
Q ss_pred HcCChhHHHHHHHHHHhC
Q 007396 448 RAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~ 465 (605)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888777664
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=8.3e-06 Score=66.28 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHC-CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 383 AGMLGEALELIQSM-PI---QQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
.|++++|...|++. .. .|+ ...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666666666665 33 243 33677777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 007396 458 IRTEMASK 465 (605)
Q Consensus 458 ~~~~m~~~ 465 (605)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777653
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=5.6e-05 Score=62.95 Aligned_cols=100 Identities=7% Similarity=-0.088 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLS 410 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 410 (605)
+...+..+...+...|++++|...|+..... .+.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666667777777777777777776632 1234566777777777788888887777766 3334 4557888888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCC
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
++...|++++|+..++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888776
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=7.3e-05 Score=76.92 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.+...+..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 466777888888999999999988886 3444 46688899999999999999999999999999999999999999999
Q ss_pred HcCChhHHHH-HHHHHHh
Q 007396 448 RAQRWYDVAK-IRTEMAS 464 (605)
Q Consensus 448 ~~g~~~~a~~-~~~~m~~ 464 (605)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988764 4455543
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=5e-05 Score=62.34 Aligned_cols=95 Identities=7% Similarity=0.063 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH-------PSDYVL 441 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 441 (605)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.+ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777777888888888888776 2233 45678888888888999999999999998887765 678889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998874
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.92 E-value=2.4e-05 Score=81.00 Aligned_cols=116 Identities=7% Similarity=-0.024 Sum_probs=79.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|.+.|++..+. -+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344566667777766666632 1223566667777777777777777777665 3444 34577788888888888888
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHH--HHHcCChhHHHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNM--YARAQRWYDVAKIRT 460 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 460 (605)
|+..++++++.+|.++..+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888887777777 778888888888876
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.92 E-value=9e-05 Score=76.63 Aligned_cols=119 Identities=8% Similarity=-0.044 Sum_probs=66.3
Q ss_pred hHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 007396 272 TSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHA 347 (605)
Q Consensus 272 ~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 347 (605)
..+...|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344455666677777777776553 223556666666677777777777777766663 33 345566666666666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL--MGRAGMLGEALELIQ 394 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 394 (605)
|++++|.+.|++..+...- +...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777766666532111 22233333333 555666666666665
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=7.5e-05 Score=59.29 Aligned_cols=98 Identities=16% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC---CHHHHHHHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ---NDVVWRSLLSAS 412 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~a~ 412 (605)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 334444455555555555555555421 1223445555556666666666666666554 2233 345666777777
Q ss_pred Hhc-CChHHHHHHHHHHHhhCCCCC
Q 007396 413 KVH-HNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 413 ~~~-g~~~~a~~~~~~~~~~~~~~~ 436 (605)
... |+.++|.+.++++.+..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 777777777777777776543
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.89 E-value=1.3e-05 Score=72.05 Aligned_cols=160 Identities=9% Similarity=-0.089 Sum_probs=74.9
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
.+......|+++.+.+.++.-.+. ....|..+...+.+.|++++|+..|++..... |+...+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~--------~ 78 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IHTEEWDDQ--------I 78 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TTCTTCCCH--------H
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hcccccchh--------h
Confidence 334445566666666666543321 33467777788888899999999988887642 221100000 0
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
.. .........++..+..+|.+.|++++|...|+... ..+...|..+..+|...|++++|...|++.
T Consensus 79 ~~----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 79 LL----------DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00 00000012344455555555555555555555443 223445555556666666666666666666
Q ss_pred HHcCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 007396 326 LREGLEP-DDVVYVGVLSACSHAGLVNEGL 354 (605)
Q Consensus 326 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 354 (605)
.+. .| +...+..+..++...++.+++.
T Consensus 149 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 149 ASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 553 23 2334444444444444444444
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=0.00012 Score=62.38 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCc
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPS 437 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~ 437 (605)
.+..+...+...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++..+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555556665555555543 00111 235666666777788888888888877765321 234
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.+..++..|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577888889999999999998887764
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=6.2e-05 Score=61.73 Aligned_cols=107 Identities=7% Similarity=-0.042 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC----CCC----HHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI----QQN----DVVWRS 407 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 407 (605)
+..+...+...|++++|..+|+..... .+.+...+..+...|.+.|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555421 1223445555555555666666666655554 11 122 446667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+..++...|++++|...++++.+..| ++.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77777788888888888888888777 455444444443
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.87 E-value=0.00021 Score=70.19 Aligned_cols=119 Identities=8% Similarity=-0.138 Sum_probs=67.4
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--------------hhHHHHHHHHHHcCCCHHHHHHHHHhcCC---
Q 007396 132 FTFPALFKACAKLQALKEGMQIHGHVFKVGFECD--------------LFVQNSLINMYGKCEKVEFASAIFKQMDQ--- 194 (605)
Q Consensus 132 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 194 (605)
..+..+...+...|++++|...|+.+++...... ..++..+..+|.+.|++++|...|++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455566666667777777777777766643321 35555566666666666666666655432
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhH
Q 007396 195 KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLG 252 (605)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a 252 (605)
.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 244556666666666666666666666665532 22334444444444445554444
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.81 E-value=0.00022 Score=58.73 Aligned_cols=97 Identities=10% Similarity=0.010 Sum_probs=49.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC------C----hhHHHHHH
Q 007396 135 PALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK------S----VASWSAII 204 (605)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~----~~~~~~li 204 (605)
..+...+.+.|++++|...|+++++..+. +...|+.+..+|.+.|++++|.+.|++..+- + ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444444445555555555555444322 3444445555555555555555555443310 0 12455556
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCChhH
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPEESI 235 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t 235 (605)
..+...|++++|++.|++... ..||..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~---~~~~~~~ 118 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS---EFRDPEL 118 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hCcCHHH
Confidence 666677777777777776655 3455443
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.00025 Score=72.99 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=97.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-HHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYR--IVPT----VQHYGCVVDLMGRAGMLGEALELIQSM---------PIQQNDV-VWR 406 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~ 406 (605)
.+...|++++|..++++...... +.|+ ..+++.|..+|...|++++|..++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577899999888877664322 2232 467888889999999999998888765 3456554 889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh-----hCCCCCch---HHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQ-----INSHHPSD---YVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.|...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 36776654 4578888899999999999999998743
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.80 E-value=0.00013 Score=62.18 Aligned_cols=97 Identities=13% Similarity=0.017 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DV 403 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~ 403 (605)
++..+...+...|++++|..+++.......-.++ ...+..+...+...|++++|.+.+++. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555554321110111 234455555666666666666665544 11111 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
.+..+...+...|+.++|...+++..+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56666677778888888888888777653
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.80 E-value=0.0032 Score=60.79 Aligned_cols=180 Identities=11% Similarity=0.022 Sum_probs=129.5
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHG--QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL-VNEGLLCF 357 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 357 (605)
+++++.+++.+. .++..+|+.-.-.+...| .+++++.++.++.+... -|...|+.-.-.+...|. .+++.+++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567778887765 446678888777777777 48999999999998643 256677766666777787 69999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc------
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRA--------------GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVH------ 415 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~------ 415 (605)
+.+... . +-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH-C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999853 2 34566676666665554 4578888888876 3344 566887665555444
Q ss_pred -----CChHHHHHHHHHHHhhCCCCCchHHHHHHHH---HHcCChhHHHHHHHHHHhCC
Q 007396 416 -----HNLEIGEIAAKNLFQINSHHPSDYVLLSNMY---ARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 416 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.++++++.++++++.+|++.-.+..++... ...|..+++...+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999998865554443322 24577888889999888744
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.79 E-value=0.00013 Score=72.71 Aligned_cols=135 Identities=10% Similarity=0.004 Sum_probs=97.9
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDL 379 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 379 (605)
.|..+...+.+.|++++|+..|++..+. .|+. ......+++ . ...| +...|..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~-------~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG-------A---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH-------G---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHH-------H---HHHHHHHHHHHHHHHH
Confidence 4566666677777777777777766541 0000 000001110 0 1112 35678888889
Q ss_pred HHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 380 MGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
|.+.|++++|.+.+++. ...|+ ...|..+..++...|++++|+..++++++++|.+...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 55664 55888899999999999999999999999999999999999999998888877754
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00038 Score=57.02 Aligned_cols=99 Identities=5% Similarity=-0.172 Sum_probs=59.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHh
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKV 414 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~ 414 (605)
...+...|++++|...|+.+.....-.+. ...+..+...+.+.|++++|...|++. ...|+ ...+..+..++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34445556666666666665532111110 135555666666677777777666665 22233 3456667777788
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchH
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.|+.++|...++++.+..|+++...
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHH
Confidence 8888888888888888888765443
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=8.5e-05 Score=60.64 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=53.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCC
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHN 417 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 417 (605)
+...+...|++++|...|+...+. -+.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344455566666666666665531 1224455555666666666666666666655 3334 34466666667777777
Q ss_pred hHHHHHHHHHHHhhCCCC
Q 007396 418 LEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~ 435 (605)
.++|+..++++++.+|.+
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 777777777777776653
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.75 E-value=6.9e-05 Score=63.56 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC--------CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM--------PIQQNDV-VW----RSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.|..+..++.+.|++++|+..+++. .+.|+.. .| .....++...|++++|+..|++.++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555555666666666665555544 3478765 88 899999999999999999999999999987765
Q ss_pred HH
Q 007396 439 YV 440 (605)
Q Consensus 439 ~~ 440 (605)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.0006 Score=69.33 Aligned_cols=157 Identities=8% Similarity=-0.029 Sum_probs=113.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPD----------------DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQ 371 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 371 (605)
.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45667777777777777766422111 12467788999999999999999998875433333322
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC------
Q 007396 372 ----HYGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS------ 433 (605)
Q Consensus 372 ----~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~------ 433 (605)
+.+.+-..+...|+.++|.+++++. +..+. ..++..|...+...|++++|...++++...-.
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2333344445678899998888765 22333 34788889999999999999999999876521
Q ss_pred CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 434 HHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.....+..++.+|...|++++|..++++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1235788999999999999999999988764
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=4e-05 Score=75.44 Aligned_cols=147 Identities=9% Similarity=-0.031 Sum_probs=76.0
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
..|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+ . ...|..+...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 3466666677778888888888888776 3444432 22233333332221 1 1366777888
Q ss_pred HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH-HcCChhHHH
Q 007396 380 MGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA-RAQRWYDVA 456 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 456 (605)
|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|.++..+..|..+.. ..+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 3444 45688888888888899999999999988888888888777777743 445667777
Q ss_pred HHHHHHHhCC
Q 007396 457 KIRTEMASKG 466 (605)
Q Consensus 457 ~~~~~m~~~~ 466 (605)
++++.|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 7777776543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.69 E-value=3.6e-05 Score=62.38 Aligned_cols=91 Identities=9% Similarity=-0.031 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007396 347 AGLVNEGLLCFDRMKLEYR--IVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
.|++++|...|++..+ .+ -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666766662 11 1123456666777777777777777777776 3334 3457777777888888888888
Q ss_pred HHHHHHHhhCCCCCch
Q 007396 423 IAAKNLFQINSHHPSD 438 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~ 438 (605)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888876654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.66 E-value=0.00014 Score=62.78 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
...|..+..+|.+.|++++|...+++. .+.|+ ...|..+..++...|++++|...++++++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 456777888888999999999888876 44454 55888899999999999999999999999999876
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.62 E-value=0.00014 Score=71.59 Aligned_cols=152 Identities=9% Similarity=-0.002 Sum_probs=81.0
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA 347 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (605)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888999999999999999998653221111 1223334444433221 13677788888899
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHH-HHhcCChHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSA-SKVHHNLEIGEIA 424 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a-~~~~g~~~~a~~~ 424 (605)
|++++|...++..... -+.+...|..+..+|...|++++|.+.|++. .+.|+.. .+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988742 1335778888999999999999999999987 5666544 45544444 2445677888889
Q ss_pred HHHHHhhCCCCC
Q 007396 425 AKNLFQINSHHP 436 (605)
Q Consensus 425 ~~~~~~~~~~~~ 436 (605)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887654
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.62 E-value=0.00032 Score=54.86 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...|..+..++...|++++|+..++++++.+|.++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45688889999999999999999999999999999999999999999999999999999988763
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00019 Score=57.67 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=64.3
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 4445 45688888888999999999999999999999998889999999999999999999999988763
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0002 Score=56.89 Aligned_cols=91 Identities=10% Similarity=-0.077 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYV 440 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 440 (605)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456667777888888888888888776 3344 45688888889999999999999999999999987 66677
Q ss_pred HHHHHHHHcCChhHHHHHH
Q 007396 441 LLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~ 459 (605)
.+..++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777766665443
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.53 E-value=0.00056 Score=67.98 Aligned_cols=114 Identities=3% Similarity=-0.103 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~a~ 412 (605)
...+..+...+...|++++|...|++..+.. +. .......+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888776310 00 00001111111 1223 345888899999
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|+..++++++++|.++..|..++.+|...|++++|.+.+++..+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999988743
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.00054 Score=51.94 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666667777778888888777765 2333 45577788888888899999999999998888888888888887776
Q ss_pred HcC
Q 007396 448 RAQ 450 (605)
Q Consensus 448 ~~g 450 (605)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.45 E-value=0.00046 Score=70.91 Aligned_cols=65 Identities=3% Similarity=-0.094 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|..+..++.+.|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46888899999999999999999999999999999999999999999999999999999998754
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=0.0037 Score=65.85 Aligned_cols=168 Identities=14% Similarity=-0.002 Sum_probs=127.8
Q ss_pred HHHHHHHHhccCC---CCeeeHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--
Q 007396 284 LEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQ----------GKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG-- 348 (605)
Q Consensus 284 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 348 (605)
-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+...+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 4567777776652 234567766666666666 88999999999875322 4567777777778888
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc----------
Q 007396 349 LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-MLGEALELIQSM-PIQQ-NDVVWRSLLSASKVH---------- 415 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---------- 415 (605)
+++++.++++.+.+. -+-+-..|+.-..++.+.| ..+++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999852 2345677777777778888 889999999888 5555 566888887776653
Q ss_pred ----CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhH
Q 007396 416 ----HNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYD 454 (605)
Q Consensus 416 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (605)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888554
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00011 Score=62.11 Aligned_cols=86 Identities=5% Similarity=-0.024 Sum_probs=66.8
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHN----------LEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445667777777665 3344 34466666666665554 5699999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 007396 449 AQ-----------RWYDVAKIRTEMASKG 466 (605)
Q Consensus 449 ~g-----------~~~~a~~~~~~m~~~~ 466 (605)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998854
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.23 E-value=0.0024 Score=48.95 Aligned_cols=68 Identities=7% Similarity=0.013 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 400 QNDVVWRSLLSASKVHHN---LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
+|...+..+..++...++ .++|..+++++++.+|+++.....++..+...|++++|...|+++.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777777755544 79999999999999999999999999999999999999999999998654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0012 Score=52.18 Aligned_cols=66 Identities=5% Similarity=-0.076 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999998754
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.20 E-value=0.0028 Score=65.09 Aligned_cols=124 Identities=11% Similarity=-0.056 Sum_probs=87.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCC---H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhc--CCCCC----hHHHH
Q 007396 308 GLAMHGQGKEALSIFSEMLRE---GLEPD---D-VVYVGVLSACSHAGLVNEGLLCFDRMKLEY--RIVPT----VQHYG 374 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~ 374 (605)
.+...|++++|+.++++.++. -+-|+ . .+++.|..+|...|++++|..++++...-+ -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456788888888888877652 12232 2 478888888889999999988888765311 12222 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 375 CVVDLMGRAGMLGEALELIQSM---------PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
.|..+|...|++++|+.++++. +-.|+.. +.+.|-.++...+.+++|+.+++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888775 2345444 4455556677888899999999888653
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.17 E-value=0.0013 Score=66.44 Aligned_cols=116 Identities=10% Similarity=0.091 Sum_probs=87.5
Q ss_pred HHHHHhcCCHHHHHHHHHHC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCCC---ch
Q 007396 377 VDLMGRAGMLGEALELIQSM---------PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQI-----NSHHP---SD 438 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~ 438 (605)
+..+.+.|++++|++++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|.+| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778999998888765 122333 38889999999999999999999998754 45554 45
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLK 510 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 510 (605)
++.|+.+|...|++++|..++++..+.-.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999988752110 112358999999888888777765
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.05 E-value=0.0069 Score=50.36 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR----AQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 466 (605)
...+..|...|.. .+|.++|...+++..+.+ ++..+..|..+|.. .++.++|.+.+++..+.|
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 3344444444444 455666666666665542 35556666666666 666666666666666655
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.00 E-value=0.0068 Score=50.40 Aligned_cols=108 Identities=9% Similarity=-0.120 Sum_probs=53.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----cCCHHHH
Q 007396 212 LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----CGCLEKG 287 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A 287 (605)
++++|++.|++..+.| .|+.. +...+...+.++.|.+.+....+.| +...+..|..+|.. .++.++|
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4566666776666655 33333 4444445555555666666666554 34444555555554 4455555
Q ss_pred HHHHhccCC-CCeeeHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 007396 288 LCLFRMMAD-KCQLTYSVMISGLAM----HGQGKEALSIFSEMLRE 328 (605)
Q Consensus 288 ~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 328 (605)
.++|++..+ .++..+..|...|.. .++.++|...|++..+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555544332 233334444444444 44444444444444443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.98 E-value=0.003 Score=47.61 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|..+...+...|++++|+..++++.+.+|.++..+..++.+|...|++++|.+.+++..+.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44788888899999999999999999999999999999999999999999999999999988743
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.82 E-value=0.0014 Score=66.20 Aligned_cols=82 Identities=10% Similarity=-0.008 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCCC---chHHHHHH
Q 007396 383 AGMLGEALELIQSM---------PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQI-----NSHHP---SDYVLLSN 444 (605)
Q Consensus 383 ~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~ 444 (605)
.|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++. +|+++ .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46778888777664 2334443 8899999999999999999999998854 56555 45788999
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 007396 445 MYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~ 464 (605)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.79 E-value=0.0047 Score=49.26 Aligned_cols=80 Identities=9% Similarity=-0.025 Sum_probs=50.4
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
+...|+...+ .-+.+...+..+...|.+.|++++|...|++. ...| +...|..+..++...|+.++|...++++.+
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555542 11224556666666677777777777777665 2333 344677777777778888888888888777
Q ss_pred hCCC
Q 007396 431 INSH 434 (605)
Q Consensus 431 ~~~~ 434 (605)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7654
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.78 E-value=0.056 Score=56.77 Aligned_cols=171 Identities=9% Similarity=-0.057 Sum_probs=121.7
Q ss_pred CCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCC----------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 007396 110 VEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQA----------LKEGMQIHGHVFKVGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 110 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (605)
...++|++.++++.+. .|+.+ .|+.--.++...++ ++++...++.+++..++ +..+|+.-...+.+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3346789999998885 45544 45555555555555 88899999999888755 77788888888888
Q ss_pred CC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc------
Q 007396 179 CE--KVEFASAIFKQMDQ---KSVASWSAIIAAHASNG-LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL------ 246 (605)
Q Consensus 179 ~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~------ 246 (605)
.| +++++.+.++++.+ +|..+|+.-...+.+.| .++++++.++++.+.. +-|...|.....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhcccccc
Confidence 88 67999999988764 56678888877788888 8889999998888754 44666666655554442
Q ss_pred --------CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHH
Q 007396 247 --------GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEK 286 (605)
Q Consensus 247 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 286 (605)
+.++++.+.+..++... +-|...|+-+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 34567777777777665 3466777777777766665333
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.70 E-value=0.0013 Score=55.61 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=37.4
Q ss_pred HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhhCCCCC
Q 007396 386 LGEALELIQSM-PIQQN-DVVWRSLLSASKVH-----------HNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 436 (605)
+++|...|++. .+.|+ ...|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 45666666665 44554 34677777777665 589999999999999999864
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.70 E-value=0.01 Score=59.93 Aligned_cols=93 Identities=18% Similarity=0.058 Sum_probs=69.9
Q ss_pred ccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-HHHHHH
Q 007396 346 HAGLVNEGLLCFDRMKLEY--RIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM---------PIQQNDV-VWRSLL 409 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 409 (605)
+.|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887765422 22332 367888888888999999888888765 3456655 899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhh-----CCCCCch
Q 007396 410 SASKVHHNLEIGEIAAKNLFQI-----NSHHPSD 438 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 438 (605)
..|...|++++|+.++++++++ ||++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999998764 6776654
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.12 Score=56.86 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=107.7
Q ss_pred HHHHhCCCchHHHH-HHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 104 RGFVKEVEFEEALF-LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 104 ~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
......+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+ +.. .-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 33455788888876 44221 112233667777788888888887553 111 113456778999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 183 EFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 183 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+....+-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999988774 568999999999999999999999998743 233444444466666555554444444
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSE 324 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (605)
| -++.-..+|.++|++++|.+++. +.+++++|..+-+.
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 3 12334445666777777766644 44666666665554
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.016 Score=48.36 Aligned_cols=91 Identities=10% Similarity=0.059 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccc
Q 007396 400 QNDVVWRSLLSASKVHH---NLEIGEIAAKNLFQIN-S-HHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFS 474 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 474 (605)
++..+.-.+..++.+.+ +.++|+.+++.+.+.+ | .+...+..|+-+|.+.|++++|.+.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 56666666777777777 6679999999999988 6 356778889999999999999999999998733
Q ss_pred eEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCccc
Q 007396 475 LVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSP 516 (605)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 516 (605)
|...++..+.+.+.+.+++.|++-
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 334556666666667888887653
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.61 E-value=0.018 Score=58.21 Aligned_cols=100 Identities=11% Similarity=-0.030 Sum_probs=74.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-H
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYR--IVPT----VQHYGCVVDLMGRAGMLGEALELIQSM---------PIQQNDV-V 404 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~ 404 (605)
+..+...|++++|..++++...... +.|+ ..+++.+..+|...|++++|+.++++. +..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4455667888888888887764221 2232 457788888888899999988888765 3455554 8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCCCchHH
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQI-----NSHHPSDYV 440 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~ 440 (605)
++.|...|...|++++|+.++++++++ ||++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 889999999999999999999998754 677765543
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.59 E-value=0.0035 Score=48.71 Aligned_cols=66 Identities=6% Similarity=-0.098 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..+++.+++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4556666777777777777777777765 3334 3447777777778888888888888887776543
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.50 E-value=0.24 Score=39.75 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=96.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 389 (605)
.-.|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-+. ...+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHHH
Confidence 3456666666666666542 2333444444433344444444555554433222 2346777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 390 LELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 390 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
...+-.++ .+.......+......|+.++-.++...++..++.++.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777764 245566777888899999999999999987777778899999999999999999999999999999985
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.48 E-value=0.0071 Score=46.54 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCc-hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHPS-DYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+...|++++|+..++++.+.+|.++. .+..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555554444 455555555555555555555554444
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.36 E-value=0.022 Score=43.64 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PIQQ-NDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++.+|.++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345567778888888888776 3344 455 788888888899999999999999999999887765
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.29 E-value=0.058 Score=52.31 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCeeeHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCH
Q 007396 297 KCQLTYSVMISGLA--MHG---QGKEALSIFSEMLREGLEPDD 334 (605)
Q Consensus 297 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~ 334 (605)
.+...|...+.+.. ..+ ...+|..+|++..+ ..|+.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~ 232 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEF 232 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCC
Confidence 35566666665533 223 24678888888887 45653
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.089 Score=58.03 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=21.6
Q ss_pred HhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555444332 2234555555555555555555555544
No 221
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.92 E-value=1.4 Score=46.41 Aligned_cols=252 Identities=10% Similarity=0.013 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc
Q 007396 167 FVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL 246 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~ 246 (605)
..-+.-+..+++.+++......+.. +..+...--....+....|+..+|....+.+-..| ......+..++..+.+.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHC
Confidence 3445566677788888888887766 33344444455666777888888888888877776 34445566666666655
Q ss_pred CChhhH--HHHHHHHHHhc-----------CCchH-HHHhHHHhHHHhcCCHHHHHHHHhccCCCCee---eHHHHHHHH
Q 007396 247 GALDLG--KCTHGSLIRNI-----------SALNV-IVETSLIDMYVKCGCLEKGLCLFRMMADKCQL---TYSVMISGL 309 (605)
Q Consensus 247 ~~~~~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~ 309 (605)
|.+... .+=+..+...| ++++. .....++..+.+-.. +....... .++.. .+...+.-+
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~-~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTT-GATDFTRQMAAVAFASV 225 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhcc-CCChhhHHHHHHHHHHH
Confidence 544321 11112222221 11111 111222222221111 11111111 11111 111122223
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVV----YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
++ .+.+.|..+|....+.+ ..+... ...+.......+...++...+...... .++.....-.+..-.+.|+
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 33 36788888888876543 223322 222222333445344555556654421 2333334444444557788
Q ss_pred HHHHHHHHHHCCCCC-CHHHH-HHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 386 LGEALELIQSMPIQQ-NDVVW-RSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 386 ~~~A~~~~~~m~~~p-~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
++.|...|+.|+..+ +..-| -=+..+....|+.++|..+++++.+
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998885432 22222 2234466778888888888888865
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.59 E-value=0.046 Score=50.86 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=69.7
Q ss_pred HHHHHHHHHHC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHc-CChhH
Q 007396 386 LGEALELIQSM-PIQQN---DVVWRSLLSASKV-----HHNLEIGEIAAKNLFQINSH-HPSDYVLLSNMYARA-QRWYD 454 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p~---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~ 454 (605)
..+|...+++. .+.|+ -..|..|...|.. -|+.+.|++.|++.++++|+ +..+++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666655 55666 4478888888877 49999999999999999997 499999999999985 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 007396 455 VAKIRTEMASKGLNQSPG 472 (605)
Q Consensus 455 a~~~~~~m~~~~~~~~~~ 472 (605)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877653343
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.37 E-value=0.14 Score=49.73 Aligned_cols=133 Identities=7% Similarity=-0.042 Sum_probs=71.4
Q ss_pred CCCcchHHHHHHHHHcc-----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----cCC----C---HHHHHHHHHh
Q 007396 128 EPDNFTFPALFKACAKL-----QALKEGMQIHGHVFKVGFECDLFVQNSLINMYG----KCE----K---VEFASAIFKQ 191 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g----~---~~~A~~~~~~ 191 (605)
+.|...|...+++.... .+..+|..+|+++++..+. ....+..+.-+|. ..+ . +..+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666677777655322 2346777888888777432 3344444333332 000 0 1111111111
Q ss_pred cC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcC
Q 007396 192 MD--QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS 264 (605)
Q Consensus 192 m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 264 (605)
+. ..+..+|.++...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.++.+.+..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 11 234555665555555567777777777776663 35655555555666666777777776666666543
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.35 E-value=0.0013 Score=65.15 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=112.3
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHH
Q 007396 79 GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVF 158 (605)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (605)
++++.|.+.-++...| ..|..|..+..+.++..+|++.|-+. -|+..|..++.++.+.|.+++-...+....
T Consensus 39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444444333 34556666666666666665544211 244455666666666666666555555444
Q ss_pred HhCCCCchhHHHHHHHHHHcCCCHHH----------------------------HHHHHHhcC-----------------
Q 007396 159 KVGFECDLFVQNSLINMYGKCEKVEF----------------------------ASAIFKQMD----------------- 193 (605)
Q Consensus 159 ~~g~~~~~~~~~~li~~y~~~g~~~~----------------------------A~~~~~~m~----------------- 193 (605)
+. ..++.+=+.|+-+|+|.+++.+ |.-+|..+.
T Consensus 111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 111 KK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HH--hcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 33 2233444556666666655444 333333222
Q ss_pred -------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc
Q 007396 194 -------QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL 266 (605)
Q Consensus 194 -------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 266 (605)
..++.+|-.+-.+|...+.+.-|.-.--.+. +.|| -+..++.-|-..|-+++-..+++.-.... ..
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rA 261 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RA 261 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence 1244456666666666555554433322222 1111 11223334445555555555554444211 23
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC----CC-------CeeeHHHHHHHHHhcCCHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA----DK-------CQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~-------~~~~~~~li~~~~~~g~~~~A~ 319 (605)
....++-|.-.|+|- +.++-.+.++.-. -| ....|.-++-.|.+-.+++.|.
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 466777777777775 3444444443222 11 2357888888888888887664
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.32 E-value=0.082 Score=40.18 Aligned_cols=67 Identities=7% Similarity=-0.006 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 368 PTVQHYGCVVDLMGRAGM---LGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.++..+..+..++...++ .++|..++++. ...|+. ..+..+...+...|++++|+..++++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777754444 68888888877 455544 46667777888899999999999999998887
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.29 E-value=1.1 Score=38.34 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=59.7
Q ss_pred HHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKC 254 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~ 254 (605)
....+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-..
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHH
Confidence 345678888888887766 3566788888888888888888888877543 2233333444455544444
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
+-+.....| -++.-...+.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333333333 1233334444556666666555443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.01 E-value=0.15 Score=39.51 Aligned_cols=70 Identities=10% Similarity=-0.003 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-----P----IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
.-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++.++.|+++.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444555555666666666555543 0 1123457888888999999999999999999999998766543
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.59 E-value=1 Score=38.43 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=88.4
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGH 156 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 156 (605)
.+|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|..... |..+.-.|...|+.+.-..+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 789999999998877 4567899999999999999999999988642 55566666677888777666555
Q ss_pred HHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 157 VFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
....| -+|.....+.-.|+++++.++|.+...... -+......|..+.|.++.+++
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 55454 134445556668999999999877654221 111222356677777777665
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.00 E-value=0.37 Score=38.58 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhC-C-CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 421 GEIAAKNLFQIN-S-HHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 421 a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
++.+++.+.+.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666665554 3 2334455566666666777777666666665
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.78 E-value=2.2 Score=34.37 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=63.5
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
+||++......+-.+.. +..-.+.-+......|.-++-.+++..+... .+|++.....+..||.+.|+..++.+++.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 45566655555555433 3344566677888899999998998886544 47888888999999999999999999999
Q ss_pred HHHHhcCC
Q 007396 258 SLIRNISA 265 (605)
Q Consensus 258 ~~~~~~~~ 265 (605)
++.+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99888864
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.52 E-value=2.2e-05 Score=77.43 Aligned_cols=220 Identities=12% Similarity=0.111 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc
Q 007396 167 FVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL 246 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~ 246 (605)
.+|..|..++.+.|++.+|.+-| ++..|+..|..+|....+.|.+++-+..+...++.. -.| ..=+.++-+|++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RES--YVETELIFALAKT 129 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CST--TTTHHHHHHHHTS
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccc--ccHHHHHHHHHhh
Confidence 44555555555555555554433 222344445555555555555555555554443322 122 2223445555555
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+. -|..|...+.+.|++..|.+.-++.
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArKA- 196 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA- 196 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTTC-
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 55444333221 2333333344444444455544444444432 1222222333333333333222111
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHH
Q 007396 327 REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVV 404 (605)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~ 404 (605)
-+..||-.+-.+|...+.+.-|...--.+. ..+.....++..|-+.|.+++-..+++.. +. +....+
T Consensus 197 -----ns~ktWKeV~~ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 197 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp -----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred -----CChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 122345555555555554444433322222 11111222344455555555555555443 22 233445
Q ss_pred HHHHHHHHHhc
Q 007396 405 WRSLLSASKVH 415 (605)
Q Consensus 405 ~~~ll~a~~~~ 415 (605)
+.-|.-.|++.
T Consensus 266 FTELaILYsKY 276 (624)
T 3lvg_A 266 FTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 55554444444
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.47 E-value=0.35 Score=40.24 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 368 PTVQHYGCVVDLMGRAG---MLGEALELIQSM-PIQ-Q--NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
++..+.-.+.-++.+.+ +++++..++++. ... | +...+-.|.-++.+.|+++.|.+.++.+++.+|++...
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444444444 333555555444 111 3 23355566667899999999999999999999986544
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.02 E-value=3.1 Score=33.88 Aligned_cols=90 Identities=4% Similarity=-0.057 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccce
Q 007396 400 QNDVVWRSLLSASKVHH---NLEIGEIAAKNLFQINSH-HPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSL 475 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 475 (605)
|+..+--.+..++.+.. +..+++.+++.+.+.+|. .......|+-+|.+.|++++|.++.+.+.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e--------- 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--------- 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---------
Confidence 44444333444444443 456788899998888875 34456678889999999999999999988743
Q ss_pred EEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcc
Q 007396 476 VEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYS 515 (605)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 515 (605)
|...++.++-+.+.++|.+.|++
T Consensus 108 -----------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 -----------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 34456666666666788888864
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.78 E-value=1.8 Score=40.18 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhccC--CC--CeeeHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 007396 282 GCLEKGLCLFRMMA--DK--CQLTYSVMISGLAMH-GQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 282 g~~~~A~~~f~~m~--~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~ 331 (605)
|+.++|.+.|++.. .| +..++......++.. |+.+++.+.+++.+.....
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45555555554433 12 233444444444442 5555555555555554443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.29 E-value=0.59 Score=38.46 Aligned_cols=56 Identities=2% Similarity=-0.136 Sum_probs=42.4
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
..+|.++|.++|+.+.+....-+..+...+..-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34788999999999988744444556666666678999999999999888866543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.28 E-value=1.2 Score=47.86 Aligned_cols=54 Identities=6% Similarity=-0.022 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346778999999999999999999999999999999999999999999998874
No 237
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.82 E-value=0.85 Score=35.13 Aligned_cols=64 Identities=8% Similarity=-0.107 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQIN-------SHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
..-+-.|...+...|+++.|..-++++++.. +..+..+..|+.+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4445677888899999999999999988753 234567889999999999999999999999864
No 238
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.38 E-value=2.5 Score=31.78 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
...++|.-|-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 457778888777776654 333333334567789999999999999999999999888764 6688888888887887
Q ss_pred hCCCCCCChhHHH
Q 007396 225 NEKCWRPEESILV 237 (605)
Q Consensus 225 ~~g~~~p~~~t~~ 237 (605)
.+| .|....|.
T Consensus 97 ~sg--~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ--DPRIQTFV 107 (116)
T ss_dssp TCC--CHHHHHHH
T ss_pred hCC--CHHHHHHH
Confidence 777 55555554
No 239
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.09 E-value=2.3 Score=31.88 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
...++|.-|-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456778888777776654 333333344567789999999999999999999999887654 7888888888888888
Q ss_pred hCCCCCCChhHHHH
Q 007396 225 NEKCWRPEESILVS 238 (605)
Q Consensus 225 ~~g~~~p~~~t~~~ 238 (605)
.+| .|....|..
T Consensus 96 ~sg--~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS--DPALADFAA 107 (115)
T ss_dssp TCS--SHHHHHHHH
T ss_pred hCC--CHHHHHHHH
Confidence 887 565555543
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.61 E-value=3.6 Score=33.85 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHHHCCCh------hHHHHHHHHHHhCCCCCCChhH----HHHHHH---HHhccCChhhHHHHHHHHH
Q 007396 194 QKSVASWSAIIAAHASNGLW------SECLKLFGEMNNEKCWRPEESI----LVSVLS---ACTHLGALDLGKCTHGSLI 260 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~p~~~t----~~~ll~---a~~~~~~~~~a~~~~~~~~ 260 (605)
..|..+|-..+...-+.|+. ++..++|++.... ++|+... |.-+.- .+...++++.|+++|+.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45777888888888888888 7888888887764 5675421 111100 0122356677777776666
Q ss_pred HhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 261 RNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 261 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
+.+ .--..+|......-.+.|+++.|.++
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkI 116 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQL 116 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 542 21234443333333333443333333
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.51 E-value=3.8 Score=32.69 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHhcCCHHH---HHHHHHHC-CCC-C-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 368 PTVQHYGCVVDLMGRAGMLGE---ALELIQSM-PIQ-Q-ND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p-~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
|+..+--.+.-++.+..+..+ +..++++. ... | +. ...-.|.-++.+.|+++.|.+.++.+++.+|.|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 444444445555555555444 55555554 212 3 11 2344455678899999999999999999999875543
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.88 E-value=1.9 Score=34.68 Aligned_cols=48 Identities=4% Similarity=0.033 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 417 NLEIGEIAAKNLFQINSH-HPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+...|+.+++.+.+.+|. .......|+-++.+.|++++|.+..+.+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455677888888877764 345566777888888888888888888776
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.38 E-value=25 Score=33.11 Aligned_cols=168 Identities=7% Similarity=-0.017 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHH----HHHHHhCCCCCCChhHHHHHHHHH
Q 007396 168 VQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKL----FGEMNNEKCWRPEESILVSVLSAC 243 (605)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~p~~~t~~~ll~a~ 243 (605)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+ ++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 3444555678888888888886442 3345566766555543 44445556 788887777777766
Q ss_pred hccCChh-hHHHHHHHHH----Hhc--CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhc---C
Q 007396 244 THLGALD-LGKCTHGSLI----RNI--SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMH---G 313 (605)
Q Consensus 244 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g 313 (605)
.....-+ .-..+.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533222 1223333333 332 2236777888899999999999999887633222344444444333332 3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 362 (605)
...++-- ..-.+++ -|...|++..|..+|+...+
T Consensus 183 ~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3333211 1112222 24456888888888887664
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.96 E-value=2.6 Score=41.52 Aligned_cols=69 Identities=12% Similarity=0.035 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCCCCCc
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA-----SKGLNQSPG 472 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 472 (605)
....++.++...|+.+++...++.+...+|-+...|..|+.+|.++|+..+|.+.|+... +.|+.|.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344566777888999999999999999999988899999999999999999999888765 358877554
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.82 E-value=6.3 Score=29.80 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
+.-+..+-+..+....+.|+.....+.|.||-+.+++..|.++|+.++.+.| +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556677777777778899999999999999999999999999999886544 335567776643
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.21 E-value=7.1 Score=32.73 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=13.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
++..+..++...|.+.+|...|++.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444445555556666666655554
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.03 E-value=60 Score=35.69 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 82 DYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 82 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
..+.++|.+++.| -|..++....+-++.+.+.++|..+..
T Consensus 219 r~l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 219 RKSFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466666666543 466777777888888888888888763
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.01 E-value=44 Score=38.10 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=59.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC----Ce---------------
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK----CQ--------------- 299 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~--------------- 299 (605)
++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 333444445555444433221 223333345667778888888888888765311 00
Q ss_pred -------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 300 -------LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD----VVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 300 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
.-|..++..|-+.|.++.+.++-+...+....-+. ..|..+.+++...|++++|...+-.+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 01344555555556555555555544432111111 134455555555666666655554443
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.60 E-value=26 Score=35.09 Aligned_cols=164 Identities=8% Similarity=0.000 Sum_probs=103.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHcCCCHHHHHHHHHhcCC------CC----hhH
Q 007396 135 PALFKACAKLQALKEGMQIHGHVFKV--GFECD---LFVQNSLINMYGKCEKVEFASAIFKQMDQ------KS----VAS 199 (605)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~----~~~ 199 (605)
..+...+-..|++.+|..++..+... |.... ...+...+..|...+++..|..++.++.. ++ ..-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667778889999999999987643 32222 35677888999999999999988887631 11 234
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHH----HHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV----LSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l----l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+..++..+...+++.+|...|.+........-|...+..+ +....-.+....-..+.....+...-++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 6677778888999999998888875431022233222221 111111222222223333333333345778889999
Q ss_pred hHHHhc--CCHHHHHHHHhccCCCC
Q 007396 276 DMYVKC--GCLEKGLCLFRMMADKC 298 (605)
Q Consensus 276 ~~y~~~--g~~~~A~~~f~~m~~~~ 298 (605)
.+|... .+++.+.+.|.....++
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHhchHhhhHHHHHHHHHHhccc
Confidence 999764 46788888888766554
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.42 E-value=33 Score=32.26 Aligned_cols=170 Identities=9% Similarity=0.011 Sum_probs=104.7
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHH
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSI----FSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a 343 (605)
...|.++..=|.+.+++++|.+++..- ...+.++|+...|.++ .+-..+.+++++......++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345667778888999999999885433 2345677887766664 4555667889998888877777
Q ss_pred HhccCCHH-HHHHHHHHhHH---hcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 007396 344 CSHAGLVN-EGLLCFDRMKL---EYRI--VPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVH-- 415 (605)
Q Consensus 344 ~~~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~-- 415 (605)
+.....-+ .=.++.+.+.+ +.|- .-++.....+...|.+.|++.+|+.-|- .+-.-+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcC
Confidence 65532111 11233333331 2221 2366778888899999999999988775 22111344555555544443
Q ss_pred -CChHHHHHHHHHHHhhCCCCCchH-HHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 416 -HNLEIGEIAAKNLFQINSHHPSDY-VLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 416 -g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|...++ ..| ...+--|.-.|+...|..+++...+
T Consensus 181 ~~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 181 DIEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333222 222 2233456778899999999887654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.25 E-value=18 Score=41.31 Aligned_cols=163 Identities=7% Similarity=0.001 Sum_probs=94.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChh
Q 007396 171 SLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALD 250 (605)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~ 250 (605)
.++..+.+.|..+.|.++..-.+. +...--.+...|...|++++|.+.|.+.-. | +..+..... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~-~~~~~~l~~----------~~- 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-V-LYSHTSQFA----------VL- 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-S-CTTCCCSCS----------SH-
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-h-hcccchhhh----------hh-
Confidence 455556667777777776655544 444444566778899999999999987532 2 222211000 00
Q ss_pred hHHHHHHHHHHhc--CCchHHHHhHHHhHHHhcCCHHHHHHHHhcc----CCCCe----eeHHHHHHHHHhcCCHHHHHH
Q 007396 251 LGKCTHGSLIRNI--SALNVIVETSLIDMYVKCGCLEKGLCLFRMM----ADKCQ----LTYSVMISGLAMHGQGKEALS 320 (605)
Q Consensus 251 ~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m----~~~~~----~~~~~li~~~~~~g~~~~A~~ 320 (605)
.. ...+.... ...-..-|..++..+.+.|.++.+.++-... ...+. ..|..+..++...|++++|..
T Consensus 883 --~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 883 --RE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp --HH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred --cc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 00 01111110 0112234556666677777766665544322 22221 258888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 007396 321 IFSEMLREGLEPDDVVYVGVLSACSHAGLVNE 352 (605)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 352 (605)
.+-.+.....+ ...+..|+...+..|.++.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88888764433 4556667777776666544
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.91 E-value=48 Score=33.10 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC----hHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLRE--GLEPDD---VVYVGVLSACSHAGLVNEGLLCFDRMKLEY-RIVPT----VQH 372 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~ 372 (605)
..|...|...|++.+|..++.++... |..+.. ..+...+..|...+++.+|..++.++.... ...+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677788889999999999988653 222221 356666778888999999999988875311 12222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
|.+++..+...+++.+|...|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 778888888899999988877665
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.69 E-value=11 Score=28.56 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 396 MPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 396 m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+..-|++.+..+.+.||++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 356788999999999999999999999999988866544444555443
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.48 E-value=12 Score=36.76 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKL----EYRIVPTVQH 372 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 372 (605)
++..+...|++++|+..+..+... -.-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 455666777777777777777653 233666777788888888888888877776543 4566666544
No 255
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.30 E-value=31 Score=29.93 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=70.9
Q ss_pred HHHHHHHC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 389 ALELIQSM-PIQQNDV---VWRSLLSASKVHHNLEIGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 389 A~~~~~~m-~~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+...|... ..+-|.. .|-..+..| ..++...+..+|..+...+ ..-+..|...+..+...|++.+|.++++.-
T Consensus 63 c~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 63 CLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444 3445554 555555544 2444678999999998765 456778999999999999999999999999
Q ss_pred HhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcc
Q 007396 463 ASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYS 515 (605)
Q Consensus 463 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 515 (605)
++++-.| .+...+...+...+|...+++
T Consensus 142 I~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 142 AENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 8888766 344444555556788888873
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.91 E-value=51 Score=32.17 Aligned_cols=158 Identities=9% Similarity=-0.010 Sum_probs=73.1
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCCC--------CeeeHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH----
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMADK--------CQLTYSVMISGLAMH-GQGKEALSIFSEMLREGLEPDDVVY---- 337 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~---- 337 (605)
...|...|.+.|+.++..+++.....- ..-....+|..+... +..+.-.++..+..+..- -+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334556666666666666665544311 111233444444432 222333333333332100 011222
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-----CCCCCHHHHH
Q 007396 338 --VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-----PIQQNDVVWR 406 (605)
Q Consensus 338 --~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~ 406 (605)
..+...|...|++.+|..++..+.++..-..+ .++|..-+.+|...|++.++...+.+. .+.+++.+-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 13555666667777776666666543222111 244555566666667766666666544 1222322221
Q ss_pred HHH----HHHH-hcCChHHHHHHHHHHH
Q 007396 407 SLL----SASK-VHHNLEIGEIAAKNLF 429 (605)
Q Consensus 407 ~ll----~a~~-~~g~~~~a~~~~~~~~ 429 (605)
.+- -.+. ..++++.|...|-+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 111 1234 5666666666655544
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.08 E-value=14 Score=29.58 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVD 378 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 378 (605)
+..+..+-+..+....+.|+.....+.|.+|-+.+++..|.++|+.++.+.| +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3446666677777778899999999999999999999999999999986443 44567777764
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.65 E-value=41 Score=36.08 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 397 PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 397 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
..+-+..-|..|.....+.++.++|.+.|+..+...- ++....-|+..|.+.+
T Consensus 608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~RF-s~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVARF-DPVSCQQLLKIYLQPP 660 (754)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHSCC
T ss_pred hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcC
Confidence 3445667798888888888899999999998886543 5677788888887765
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.24 E-value=17 Score=27.34 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=48.4
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 248 ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555543 33333333445667788888888888888888888876654 355666666666666655
Q ss_pred cC
Q 007396 328 EG 329 (605)
Q Consensus 328 ~g 329 (605)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.99 E-value=16 Score=27.47 Aligned_cols=85 Identities=11% Similarity=0.018 Sum_probs=53.4
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 248 ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555543 33333333445667888888888888888888888877654 466777777777767766
Q ss_pred cCCCCCHHHH
Q 007396 328 EGLEPDDVVY 337 (605)
Q Consensus 328 ~g~~p~~~t~ 337 (605)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3333333
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.98 E-value=35 Score=30.95 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=21.4
Q ss_pred CChhhHHHHHHHHHHhcCCchHH--HHhHHHhHHHhcCCHHHHHHHHh
Q 007396 247 GALDLGKCTHGSLIRNISALNVI--VETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
+......++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333445555555555444321 12233344445566655555555
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.31 E-value=57 Score=30.94 Aligned_cols=169 Identities=12% Similarity=0.016 Sum_probs=107.5
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIF----SEMLREGLEPDDVVYVGVLSAC 344 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~ 344 (605)
..|.++..=|.+.+++++|.+++-.- ...+.++|+...|.++- +-..+.++++|..+...|+..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566777789999999999875432 24466677776665554 5556678999998888888777
Q ss_pred hccCCHH-HHHHHHHHhHH---hcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 007396 345 SHAGLVN-EGLLCFDRMKL---EYRI--VPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNL 418 (605)
Q Consensus 345 ~~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~ 418 (605)
.....-+ .=..+.+.+.+ +.|- .-++.....+...|.+.|++.+|+.-|- .+..+....+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 6554311 11223333321 2232 2356777788899999999999998884 3434434566666655544332
Q ss_pred HHHHHHHHHHHhhCCCCCchHH-HHHHHHHHcCChhHHHHHHHHHHh
Q 007396 419 EIGEIAAKNLFQINSHHPSDYV-LLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 419 ~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|.....|. ..+--|.-.++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22233332 344457788899999988777664
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.00 E-value=7.3 Score=35.62 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=38.1
Q ss_pred HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 378 DLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
..+.+.|.+++|++....- .-+| |...-..|+.-++..|+++.|..-++...+++|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3455677777777766554 4445 3445555666777788888888877777777775
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.96 E-value=38 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 007396 165 DLFVQNSLINMYGKCEKVEFASAIFKQMDQ 194 (605)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 194 (605)
+..+---+-.+|.+.|+.++|..+++.++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 344444567778888888888888888763
No 265
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=73.66 E-value=47 Score=31.19 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=44.6
Q ss_pred HHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 394 QSMPIQQNDV--VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 394 ~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...+++|... +.++-++.+.+++|+..|..+.+++++++|... ..++|.+++....+.+
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3336666543 777888889999999999999999999998522 3466888887776543
No 266
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=67.72 E-value=33 Score=31.64 Aligned_cols=14 Identities=7% Similarity=0.349 Sum_probs=6.5
Q ss_pred CCCChHHHHHHHhh
Q 007396 77 HWGSMDYACSIFRQ 90 (605)
Q Consensus 77 ~~g~~~~A~~~f~~ 90 (605)
..|+.+-+..+++.
T Consensus 40 ~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 40 ADNNVRLVCTLLNA 53 (285)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHhC
Confidence 44444444444443
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.66 E-value=74 Score=29.03 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=29.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 309 LAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
..+.|..++|++....-++.. +-|...=..++.-+|-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566666666666655532 2233444445556666666666666555554
No 268
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.42 E-value=46 Score=32.77 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=9.2
Q ss_pred CCCChHHHHHHHhhcC
Q 007396 77 HWGSMDYACSIFRQID 92 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~ 92 (605)
..|+.+-...+++.-.
T Consensus 23 ~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 23 FMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHTCHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHcCC
Confidence 5566666666665533
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.39 E-value=1.1e+02 Score=32.08 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=23.0
Q ss_pred hHHHHHHHHH-----HHhcCCHHHHHHHHHHCCCCCC
Q 007396 370 VQHYGCVVDL-----MGRAGMLGEALELIQSMPIQQN 401 (605)
Q Consensus 370 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 401 (605)
..++..|.++ +...|++++|++.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455555443 3678999999999999977664
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.01 E-value=53 Score=26.38 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=39.2
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 395 SMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 395 ~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
.+..-|++.+..+.|.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3467799999999999999999999999999998876544455565444
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.03 E-value=1.2e+02 Score=28.77 Aligned_cols=167 Identities=11% Similarity=-0.009 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHH----HHHHhCCCCCCChhHHHHHHHHHh
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLF----GEMNNEKCWRPEESILVSVLSACT 244 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~p~~~t~~~ll~a~~ 244 (605)
|.++..=|.+.+++++|.+++-.- ...+.+.|+...|-++- +-..+.+ +++|......++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Confidence 334455578888888888876442 33355566655544433 4445556 7788777777777666
Q ss_pred ccCChhhH-HHHHHHHH----Hhc--CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHH
Q 007396 245 HLGALDLG-KCTHGSLI----RNI--SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 245 ~~~~~~~a-~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 317 (605)
....-+.. ..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|-.-..+.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 55432211 22333333 333 234667777888999999999999998853222222444444433333222111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 007396 318 ALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 318 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 362 (605)
+|...-.+++ -|...+++..|..+|+...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34456788888887766653
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.17 E-value=86 Score=26.91 Aligned_cols=155 Identities=10% Similarity=0.023 Sum_probs=83.7
Q ss_pred hHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007396 81 MDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKV 160 (605)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 160 (605)
.+....+.+.+..+|...-...+..+.+.|.. ++...+..+.. .+|...-...+.+++..++.+....+.. ++
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l-- 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-AL-- 90 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HT--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HH--
Confidence 33344444555556665555666666666653 33444444443 2455555556666666665432222222 22
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHH
Q 007396 161 GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240 (605)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll 240 (605)
-.++..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.|.. +++..+.++.. .++...-...+
T Consensus 91 -~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~ 164 (211)
T 3ltm_A 91 -KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAA 164 (211)
T ss_dssp -TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc----CCCHHHHHHHH
Confidence 2456667677777777777655555555555566665555566666666553 34444544442 34555555556
Q ss_pred HHHhccCC
Q 007396 241 SACTHLGA 248 (605)
Q Consensus 241 ~a~~~~~~ 248 (605)
.++.+.+.
T Consensus 165 ~aL~~~~~ 172 (211)
T 3ltm_A 165 DALGEIGG 172 (211)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 66666554
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.81 E-value=68 Score=26.36 Aligned_cols=77 Identities=3% Similarity=-0.079 Sum_probs=53.4
Q ss_pred HHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 387 GEALELIQSM-PIQQNDV---VWRSLLSASKVHHNLEIGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 387 ~~A~~~~~~m-~~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
+.+...|..- ..+-|.. .|-..+.. .+.+..+|+.+...+ ...+..|...+..+...|++.+|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345555444 3445554 34333332 233788888888664 4566788999999999999999999999
Q ss_pred HHHhCCCCC
Q 007396 461 EMASKGLNQ 469 (605)
Q Consensus 461 ~m~~~~~~~ 469 (605)
.-++++-.|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 988887766
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.38 E-value=64 Score=28.28 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=43.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHc
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFT--FPALFKACAKLQALKEGMQIHGHVFKVGFECDLFV--QNSLINMYGK 178 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~ 178 (605)
+...++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3344556777666666666666554444321 112333344456554 3444555665443211 1223344455
Q ss_pred CCCHHHHHHHHHhcC
Q 007396 179 CEKVEFASAIFKQMD 193 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~ 193 (605)
.|+.+-+..+++...
T Consensus 89 ~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 89 HRSPTCLRALLDSAA 103 (241)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHcCC
Confidence 666666666666543
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.04 E-value=80 Score=27.59 Aligned_cols=84 Identities=7% Similarity=-0.010 Sum_probs=45.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCC
Q 007396 138 FKACAKLQALKEGMQIHGHVFKVGFECDLF--VQNSLINMYGKCEKVEFASAIFKQMDQK---SVASWSAIIAAHASNGL 212 (605)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 212 (605)
|...+..|+.+....+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..+ |...++. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 334456688888888887777776554432 1223445556677877777776643322 2222222 233345566
Q ss_pred hhHHHHHHHH
Q 007396 213 WSECLKLFGE 222 (605)
Q Consensus 213 ~~~A~~~~~~ 222 (605)
.+-+..+++.
T Consensus 92 ~~~~~~Ll~~ 101 (241)
T 1k1a_A 92 PTCLRALLDS 101 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5554444443
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.84 E-value=71 Score=28.76 Aligned_cols=16 Identities=0% Similarity=0.090 Sum_probs=6.9
Q ss_pred HHHcCCCHHHHHHHHH
Q 007396 175 MYGKCEKVEFASAIFK 190 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~ 190 (605)
..+..|+.+-+..+++
T Consensus 45 ~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 45 NAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3334444444444443
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.65 E-value=92 Score=25.95 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=52.6
Q ss_pred HHHHHHHHC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 388 EALELIQSM-PIQQNDV---VWRSLLSASKVHHNLEIGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
.+...|..- ..+-|.. .|-.++..| + ....+|..+...+ ..-+..|...+..+...|++.+|.++++.
T Consensus 48 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 48 RAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444333 3445554 444444432 3 3667888887664 45667889999999999999999999999
Q ss_pred HHhCCCCC
Q 007396 462 MASKGLNQ 469 (605)
Q Consensus 462 m~~~~~~~ 469 (605)
-++++-.|
T Consensus 122 Gi~~~A~P 129 (164)
T 2wvi_A 122 GIQQKAEP 129 (164)
T ss_dssp HHHTTCBS
T ss_pred HHHcCCCc
Confidence 99888766
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.61 E-value=98 Score=30.58 Aligned_cols=96 Identities=8% Similarity=-0.103 Sum_probs=53.7
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH----
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD--VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYG---- 374 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---- 374 (605)
++..+..-|.+.|+.++|.+.|.++...-..+.. ..+..++..+...+++..+..+..++.....-.++...-+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4555666666677777777777776654333332 3555666677777777777777776653222223322211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC
Q 007396 375 CVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m 396 (605)
+-...+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1111233457777777766554
No 279
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=52.94 E-value=87 Score=25.05 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
+--|.-++.+.|+++.|.+..+.+++.+|.|.
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33344455666666666666666666666654
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.62 E-value=48 Score=31.84 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=41.1
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQ--GKEALSIFSEMLREGLEPDD 334 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 334 (605)
.+.++.=|...|+.++|.+.++++..+. .+...++..++-+.++ .+....++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 4567888888899999999998887664 1233444444444332 34566777777776654433
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.37 E-value=50 Score=32.72 Aligned_cols=61 Identities=5% Similarity=-0.121 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHccCChHHHHHHHHHHH
Q 007396 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPD--NFTFPALFKACAKLQALKEGMQIHGHVF 158 (605)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (605)
++..+..-|.+.|++++|.+.|.++......+. ...+..+++.+...+++..+.....++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455566666677777777777777665422222 2345555566666666666666655554
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=49.73 E-value=1e+02 Score=24.97 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
..--|.-++.+.|+++.|.+..+.+++.+|.|..
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 3444556788999999999999999999998654
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.13 E-value=1.2e+02 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=7.2
Q ss_pred ChhHHHHHHHHHhccCC
Q 007396 232 EESILVSVLSACTHLGA 248 (605)
Q Consensus 232 ~~~t~~~ll~a~~~~~~ 248 (605)
+...-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444443
No 284
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=48.33 E-value=73 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=44.9
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 393 IQSMPIQQNDV--VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 393 ~~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
|...+++|... +.+.-++.+.+++|+..|..+.+++++++|... ..++|.+++....+.+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 33336666543 777788889999999999999999999987521 24668888877766543
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.98 E-value=1e+02 Score=24.45 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHHHhCC
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGL--WSECLKLFGEMNNEK 227 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 227 (605)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 3456667777777777777777776542 2233344444444432 345667777776666
No 286
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=45.44 E-value=6.2 Score=23.73 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=16.1
Q ss_pred eEEEecCCccccc-cCccccCCCC
Q 007396 582 EIIVRDRKRFHRF-KDGTCSCRDY 604 (605)
Q Consensus 582 ~i~~rd~~~~h~~-~~g~csc~~~ 604 (605)
-|+=..|-.-|.. .+|.|||+-|
T Consensus 6 HI~Ge~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 6 HIRGEACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp ECSSSSCCTTSCCCTTSSBTTTTB
T ss_pred cccCCCCCCCceecCCceeccccc
Confidence 3444456666777 5999999976
No 287
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=43.69 E-value=3.7e+02 Score=29.64 Aligned_cols=297 Identities=10% Similarity=-0.042 Sum_probs=154.4
Q ss_pred HHHHHHHHhCCCchHH-HHH-HHHHHHCCCCCCcchHHHHH-HHHHccCChHHHHHHHHHHHHhC--CCCchhHHHHHHH
Q 007396 100 NTLIRGFVKEVEFEEA-LFL-YNEMFERGVEPDNFTFPALF-KACAKLQALKEGMQIHGHVFKVG--FECDLFVQNSLIN 174 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A-~~l-~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 174 (605)
.++.+++...|-..+. +.. .+++-+. + +..-+.++. -+....|+.+++..++...+..+ -.+.......+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3567788888865443 222 2344332 1 222222222 23556788888888777655421 1222334444445
Q ss_pred HHHcCCCHHHHHHHHHhcC-CCC----------hhHHHHHHHHHHHCCCh-hHHHHHHHHHHhCCCCCCChhHHH--HHH
Q 007396 175 MYGKCEKVEFASAIFKQMD-QKS----------VASWSAIIAAHASNGLW-SECLKLFGEMNNEKCWRPEESILV--SVL 240 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~-~~~----------~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~p~~~t~~--~ll 240 (605)
+...+|.-+++..++.... ..+ +..-.++.-|.+-.|.- +++.+.+..+.... .+...... ++.
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALG 497 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND--SATSGEAAALGMG 497 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHh
Confidence 5666776666776555433 222 11223333344444432 46677777776543 11111122 333
Q ss_pred HHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC-CCe-eeHH---HHHHHHHhcCCH
Q 007396 241 SACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD-KCQ-LTYS---VMISGLAMHGQG 315 (605)
Q Consensus 241 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~-~~~~---~li~~~~~~g~~ 315 (605)
..+...|+.+....++..+.+.. ..++.-.-++.-++.-.|+.+.+..+.+.+.. .+. +-|. ++.-+|+-.|+.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 34556778777788877776532 22233233333344466777777777776652 332 2333 234467778887
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007396 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML-GEALELIQ 394 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 394 (605)
.....++..+... ...+......+.-++...|+.+.+.++++.+.. ...|.+..-.++.-+....|.. .+|.+.+.
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 7777788888764 222222222222344445666666777766653 2245555445555555555543 56777777
Q ss_pred HCCCCCCHHHH
Q 007396 395 SMPIQQNDVVW 405 (605)
Q Consensus 395 ~m~~~p~~~~~ 405 (605)
.+.-.+|..+-
T Consensus 654 ~L~~D~d~~Vr 664 (963)
T 4ady_A 654 PLTKDPVDFVR 664 (963)
T ss_dssp HHHTCSSHHHH
T ss_pred HHccCCCHHHH
Confidence 77434454433
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.20 E-value=71 Score=27.82 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=7.0
Q ss_pred CCCChHHHHHHHhh
Q 007396 77 HWGSMDYACSIFRQ 90 (605)
Q Consensus 77 ~~g~~~~A~~~f~~ 90 (605)
+.|+++....+++.
T Consensus 18 ~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 18 QYGIYERCRELVEA 31 (240)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCChHHHHHHHHc
Confidence 44555555555544
No 289
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=41.64 E-value=10 Score=27.69 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHHHHHCCcccCCcccc
Q 007396 493 PAWDNIYEMIHQMEWQLKFEGYSPDISQVL 522 (605)
Q Consensus 493 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 522 (605)
+...++++.+++-..+++..|+.||...+-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 556788999999999999999999987653
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=41.49 E-value=1.6e+02 Score=30.95 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=15.2
Q ss_pred HHcCChhHHHHHHHHHHhCCCCC
Q 007396 447 ARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
...|+|++|.+.++++ ++-|
T Consensus 549 ~~~g~~~~AL~~i~~L---~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL---DLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHT---SCSC
T ss_pred HHcCCHHHHHHHHHhC---CCCC
Confidence 6889999998877664 4555
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.47 E-value=1.6e+02 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHhCCCC
Q 007396 112 FEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQALKEGMQIHGHVFKVGFEC 164 (605)
Q Consensus 112 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 164 (605)
..++.++|..|...|+--... -|......+-..|++.+|.+++..-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445666666666655443332 34444444445566666666666665555554
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.95 E-value=1.7e+02 Score=24.93 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=6.1
Q ss_pred chhHHHHHHHHHHcCC
Q 007396 165 DLFVQNSLINMYGKCE 180 (605)
Q Consensus 165 ~~~~~~~li~~y~~~g 180 (605)
|..+-...+..+.+.|
T Consensus 63 ~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 63 DAWVRRAAADALGQIG 78 (211)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 3333333333333333
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.00 E-value=1e+02 Score=28.21 Aligned_cols=92 Identities=4% Similarity=-0.013 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHH
Q 007396 376 VVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (605)
.+...+..|+.+-+..+++.-+...+...-.+.+......|+.+....+++.-...+..+..-....+...+..|+.
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~--- 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI--- 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH---
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH---
Confidence 34444566777766666665432223212233344445778888888777776555533322222212223345554
Q ss_pred HHHHHHHHhCCCCCCC
Q 007396 456 AKIRTEMASKGLNQSP 471 (605)
Q Consensus 456 ~~~~~~m~~~~~~~~~ 471 (605)
++.+.+.+.|..++.
T Consensus 209 -~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 -EMLQALFKYDINIYS 223 (285)
T ss_dssp -HHHHHHTTSCBCSTT
T ss_pred -HHHHHHHHcCCCCCC
Confidence 345556677766543
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.95 E-value=2.1e+02 Score=28.88 Aligned_cols=182 Identities=8% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHH--------HHHHHhcCCHHHHHHHHHHHHHcCCCCC------
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVM--------ISGLAMHGQGKEALSIFSEMLREGLEPD------ 333 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l--------i~~~~~~g~~~~A~~~~~~m~~~g~~p~------ 333 (605)
..++|.++..|...+.++.|..+..+..-|....=|.. ...++-.+++.+|.+.|....+.-....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASK 413 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~ 413 (605)
...+..++-+=.-.|++.+ ......+++......|..|+.++ +.|++++-...+++-. ..+.
T Consensus 311 ~~a~K~lI~V~LLlG~iP~-----r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~~F~ 372 (523)
T 4b4t_S 311 QQSNKLHCCIQLLMGDIPE-----LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------QLLL 372 (523)
T ss_dssp HHHHHHHHHHHHHHTCCCC-----HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------HHHH
T ss_pred HHHHHHHHhHHhhcCCCCC-----hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------ceec
Q ss_pred hcCChHHHHHHHHHHHhhC-----CCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 414 VHHNLEIGEIAAKNLFQIN-----SHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
+.|.+...+++-..+.+.+ ..-......-+.........++|..+...|+..|.
T Consensus 373 ~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 373 KDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.22 E-value=94 Score=26.99 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHcCC
Q 007396 106 FVKEVEFEEALFLYNEMFERGVEPDNFT--FPALFKACAKLQALKEGMQIHGHVFKVGFECDLFV---QNSLINMYGKCE 180 (605)
Q Consensus 106 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g 180 (605)
.++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+- .+.+++.|..++... ..+.+...+..|
T Consensus 16 A~~~g~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYE----RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChH----HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 34556644 3444445554443321 1123444555666653 344455554332111 123344455567
Q ss_pred CHHHHHHHHHh
Q 007396 181 KVEFASAIFKQ 191 (605)
Q Consensus 181 ~~~~A~~~~~~ 191 (605)
+.+-+..+++.
T Consensus 88 ~~~~v~~Ll~~ 98 (240)
T 3eu9_A 88 HLSMVVQLMKY 98 (240)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 77666666654
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.40 E-value=92 Score=25.55 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHHHhCC
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGL--WSECLKLFGEMNNEK 227 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 227 (605)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 3456666767777777777777776542 2233334444444322 344566666666665
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.28 E-value=1.5e+02 Score=26.31 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=41.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC--CCCC----CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFER--GVEP----DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINM 175 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (605)
-++.+....++++|++++++..+. ++++ +.......++.-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467777888889988888876542 2221 1122222233222222222233333333 22 3334444445555
Q ss_pred HHcCCCHHHHHHHHH
Q 007396 176 YGKCEKVEFASAIFK 190 (605)
Q Consensus 176 y~~~g~~~~A~~~~~ 190 (605)
+.+.|+-++|..+|-
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 566666666666653
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.91 E-value=1.2e+02 Score=25.54 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=9.5
Q ss_pred CCCChHHHHHHHhhcC
Q 007396 77 HWGSMDYACSIFRQID 92 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~ 92 (605)
..|+.+....++..-.
T Consensus 14 ~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 14 NQRDTKKVKEILQDTT 29 (201)
T ss_dssp HTTCHHHHHHHHTCTT
T ss_pred HhccHHHHHHHHHcCC
Confidence 4566666666665543
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.81 E-value=45 Score=29.90 Aligned_cols=89 Identities=9% Similarity=-0.056 Sum_probs=46.4
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcch-------HHHHHHHHH--ccCChHHHHHHHHHHHHhC---------CCCc
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPDNFT-------FPALFKACA--KLQALKEGMQIHGHVFKVG---------FECD 165 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~ 165 (605)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344566888877777777777665555332 233433332 4577766666555443211 0000
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhc
Q 007396 166 LFVQNSLINMYGKCEKVEFASAIFKQM 192 (605)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~~~~m 192 (605)
.....+.+...+..|+.+-+..+++.-
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 001122334445667777777766653
No 300
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.30 E-value=3.3e+02 Score=26.39 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 007396 367 VPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVW---RSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVL 441 (605)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (605)
.|....+..++.+|. .+++.+..++++.. .+..|.... ..|..... ...+.++ ..|-.......
T Consensus 253 ~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 455555666666654 56777777777766 244454421 11111111 1111112 23545556666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
++..+.- ..+++...+-+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 6665543 678999999999987754
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.26 E-value=84 Score=24.91 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=38.2
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQ--GKEALSIFSEMLREGLEP 332 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 332 (605)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3567777888888888888888887552 1233344444444432 345666777776666543
No 302
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.95 E-value=41 Score=25.19 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=29.7
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHH
Q 007396 79 GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEAL 116 (605)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 116 (605)
.+.+.|+++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655443
No 303
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.82 E-value=2.1e+02 Score=24.00 Aligned_cols=157 Identities=10% Similarity=0.018 Sum_probs=89.9
Q ss_pred ChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH
Q 007396 80 SMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFK 159 (605)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 159 (605)
....--.+++.+..+|...-...+..+.+.+... +...+.++.. .+|...-...+.+++..++.+....+.. +.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l- 85 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-AL- 85 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HT-
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HH-
Confidence 3444455566666677777667777777776643 3333334433 3455555566666666666533332222 22
Q ss_pred hCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHH
Q 007396 160 VGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV 239 (605)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 239 (605)
-.++..+-...+.++.+.|+.+....+.+.+..+|...-...+.++.+.+.. ++...+..+.. .++...-...
T Consensus 86 --~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~A 158 (201)
T 3ltj_A 86 --KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSA 158 (201)
T ss_dssp --TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHHHHHH
T ss_pred --cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHHHHHH
Confidence 2457777777777777777765555556666666666555666666666653 34445555443 3455555566
Q ss_pred HHHHhccCCh
Q 007396 240 LSACTHLGAL 249 (605)
Q Consensus 240 l~a~~~~~~~ 249 (605)
+.++...+..
T Consensus 159 ~~aL~~~~~~ 168 (201)
T 3ltj_A 159 ADALGEIGGE 168 (201)
T ss_dssp HHHHHHHCSH
T ss_pred HHHHHHhCch
Confidence 6666666553
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.06 E-value=65 Score=28.41 Aligned_cols=78 Identities=6% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 386 LGEALELIQSM-PIQQNDV---VWRSLLSASKVHHNLEIGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
++.+...|..- ..+-|.. .|-.++..+ +....+|..+...+ ..-+..|...+..+...|++.+|.+++
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHhCCCCC
Q 007396 460 TEMASKGLNQ 469 (605)
Q Consensus 460 ~~m~~~~~~~ 469 (605)
+.-++++-.|
T Consensus 174 ~~Gi~~~A~P 183 (223)
T 4aez_C 174 QKGKRMKAKP 183 (223)
T ss_dssp HHHHHHTCBS
T ss_pred HHHHHcCCcc
No 305
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=31.92 E-value=3e+02 Score=25.76 Aligned_cols=140 Identities=9% Similarity=0.077 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHC-C----CCCCcchHHHH---HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 007396 100 NTLIRGFVKEVEFEEALFLYNEMFER-G----VEPDNFTFPAL---FKACAKLQALKEGMQIHGHVFKVGFECDLFVQNS 171 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A~~l~~~m~~~-g----~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (605)
|-+...+.-.-+-++|..+|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...+..-
T Consensus 153 ~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W 228 (331)
T 3qye_A 153 SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPW 228 (331)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHH
Confidence 33333333334557788888887653 1 23443322222 222222222 257777888888888888888
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC--CChhHHHH--HHH----HHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHH
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQ--KSVASWSA--IIA----AHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSAC 243 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~ 243 (605)
++..+++.=.++.+.+++|.+-. .....+-+ ++. ...+..+.++.+..+..... ..+......++.-.
T Consensus 229 ~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p----~~~~~di~~li~~A 304 (331)
T 3qye_A 229 FLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP----NLGLVQMEKTINQV 304 (331)
T ss_dssp HHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT----CCCHHHHHHHHHHH
T ss_pred HHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC----CCCHHHHHHHHHHH
Confidence 88888888788889888887652 22222211 111 12234467777777765321 22344555555444
Q ss_pred hccC
Q 007396 244 THLG 247 (605)
Q Consensus 244 ~~~~ 247 (605)
....
T Consensus 305 ~~l~ 308 (331)
T 3qye_A 305 FEMD 308 (331)
T ss_dssp HHCC
T ss_pred HhCC
Confidence 4433
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.68 E-value=1.4e+02 Score=26.65 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=41.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 306 ISGLAMHGQGKEALSIFSEMLRE--GLEP----DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
++.+..+.++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHH
Confidence 44555666666666666655431 2221 11122222222222222222333333332 1 3445555666777
Q ss_pred HHhcCCHHHHHHHHHHC
Q 007396 380 MGRAGMLGEALELIQSM 396 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m 396 (605)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 78888888888777443
No 307
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.49 E-value=28 Score=23.34 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=19.0
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChh
Q 007396 210 NGLWSECLKLFGEMNNEKCWRPEES 234 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~~p~~~ 234 (605)
.-+++.|+..|.++...|.++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578899999999887775666543
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.18 E-value=1.4e+02 Score=24.97 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=69.2
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCC---CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHcCC
Q 007396 106 FVKEVEFEEALFLYNEMFERGVEP---DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFV--QNSLINMYGKCE 180 (605)
Q Consensus 106 ~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g 180 (605)
.+..|+.+....++..- +..+ |..-.+. +...+..|+.+ +.+.+++.|..++... ..+.+...+..|
T Consensus 12 A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT---TYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHTTCHHHHHHHHTCT---TCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHcC---CCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34567776666655432 1122 2222333 33344567755 4445556676554321 123344556678
Q ss_pred CHHHHHHHHHhcC-C---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHH
Q 007396 181 KVEFASAIFKQMD-Q---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 181 ~~~~A~~~~~~m~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
+.+-+..+++.-. . .|...++. +...+..|+.+-+..+++.-...- -..|..-.+.+..++........-.++.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 8888888875433 1 22222222 233445666655444444321110 1223333333333333222222234555
Q ss_pred HHHHHhcCCch
Q 007396 257 GSLIRNISALN 267 (605)
Q Consensus 257 ~~~~~~~~~~~ 267 (605)
+.+.+.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 66666665544
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.22 E-value=1.1e+02 Score=29.06 Aligned_cols=14 Identities=7% Similarity=-0.130 Sum_probs=6.4
Q ss_pred HhcCCHHHHHHHHh
Q 007396 279 VKCGCLEKGLCLFR 292 (605)
Q Consensus 279 ~~~g~~~~A~~~f~ 292 (605)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34445444444444
No 310
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.17 E-value=1.4e+02 Score=25.86 Aligned_cols=201 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCcchHH--HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 116 LFLYNEMFERGVEPDNFTFP--ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 116 ~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
.++++.+.+.|..++..... +.+...+..|+.+-+..+++. ...+........+.+...+..|+.+-+..+++.-.
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 101 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q ss_pred ----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHH--HHHHHHhccCChhhHHHHHHHHHHhcCCch
Q 007396 194 ----QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILV--SVLSACTHLGALDLGKCTHGSLIRNISALN 267 (605)
Q Consensus 194 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (605)
.++...++.+..+..... .++++.+.+.| ..++..... +.+...+..|..+ +.+.+.+.|..++
T Consensus 102 ~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 102 MDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLH 171 (237)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTT
T ss_pred CCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCC-CCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCC
Q ss_pred HHH--HhHHHhHHHhcCCHHHHHHHHhccCCCCe--eeHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007396 268 VIV--ETSLIDMYVKCGCLEKGLCLFRMMADKCQ--LTYSVMISGLAMHGQGKEALSIFSEMLRE 328 (605)
Q Consensus 268 ~~~--~~~li~~y~~~g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (605)
..- ..+.+...++.|+.+-+.-+++.-...+. ..-.+-+...+..|+.+.++++.+.+.+.
T Consensus 172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 311
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.66 E-value=1.1e+02 Score=22.42 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCchhhccccccccCccCCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHH
Q 007396 47 FKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEA 115 (605)
Q Consensus 47 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 115 (605)
...+...+.+.|+-..... ..+. . .....+.|.++++.++.++...|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~~-e~I~---~--~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEE-EKVR---N--EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHH-HHHH---T--SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHH-HHHH---c--CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 3457777777776543322 2222 1 356788899999999988888899999988887754433
No 312
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.87 E-value=1e+02 Score=27.70 Aligned_cols=97 Identities=9% Similarity=0.006 Sum_probs=51.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-------CcchHHHHHHHHH--ccCChHHHHHHHHHHHHhC----
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP-------DNFTFPALFKACA--KLQALKEGMQIHGHVFKVG---- 161 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 161 (605)
|..-++.|..+ ++.|+.+.+..+++.....+... |..-.+.|..++. +.|+.+-+..+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 44445555444 56788888878887776665332 3333445555553 3477776666665532211
Q ss_pred -----CC-CchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 162 -----FE-CDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 162 -----~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
.. .|..-. +.+...+..|+.+-+..+++.-.
T Consensus 89 ~i~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 89 FVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHTCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HhhcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCCC
Confidence 11 111222 23344456777777777776533
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.44 E-value=1.3e+02 Score=24.19 Aligned_cols=59 Identities=10% Similarity=-0.027 Sum_probs=30.3
Q ss_pred HHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 122 MFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 122 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
|.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 445555544432 23344444444444566666666665555455554445555665554
No 314
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.08 E-value=2.8e+02 Score=23.81 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCCCCHH--HH-----HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 386 LGEALELIQSMPIQQNDV--VW-----RSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 386 ~~~A~~~~~~m~~~p~~~--~~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
++.|+.+++.+...-|.. .- -..+..|.+.|.+++|.+++++.....+.+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~l 153 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPF 153 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHH
Confidence 456667777663222211 11 223346888888888888888877766554433
No 315
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.91 E-value=4.2e+02 Score=25.25 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL--VNEGLLCFDRMK 361 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~ 361 (605)
.+.++.-|...|+.++|...++++..-.+. .......+..+.-+.++ .+...+++..+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 456677777777888887777777421111 12233344444444332 344555666555
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.51 E-value=78 Score=26.00 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=37.1
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQ--GKEALSIFSEMLREGLE 331 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 331 (605)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567777888888888888888886552 1233344444444322 34566667777665543
No 317
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=26.50 E-value=17 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.6
Q ss_pred ceeEEEecCCccccccCccccCCC
Q 007396 580 EREIIVRDRKRFHRFKDGTCSCRD 603 (605)
Q Consensus 580 ~~~i~~rd~~~~h~~~~g~csc~~ 603 (605)
.+.|=+.|....|+|+||+-+-+|
T Consensus 7 ~k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeeEecCCCcEEEEEcCCceehhh
Confidence 356778999999999999976543
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.22 E-value=4.1e+02 Score=24.96 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=13.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCC
Q 007396 171 SLINMYGKCEKVEFASAIFKQMDQK 195 (605)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~m~~~ 195 (605)
.++.-|...|+.++|.+.++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 3444555555555555555555443
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.19 E-value=2.6e+02 Score=27.82 Aligned_cols=162 Identities=8% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCccccccChhHHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCc
Q 007396 21 KGPELNLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGA 96 (605)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~ 96 (605)
.+..+++..+..++..-+...-.-.. -....+.+.|++--...|..-. +-+ ..|++++|.++-..-|. ++.
T Consensus 321 ~GqVl~v~v~e~~ivpyi~~~l~n~~--lA~~lA~R~~LpGAd~L~~~~F---~~l~~~g~y~~AA~~aA~sP~giLRt~ 395 (494)
T 1bpo_A 321 KGQVLSVCVEEENIIPYITNVLQNPD--LALRMAVRNNLAGAEELFARKF---NALFAQGNYSEAAKVAANAPKGILRTP 395 (494)
T ss_dssp TCEEEEEEECTTTHHHHHHHTTCCHH--HHHHHHHHTTCSSCHHHHHHHH---HHHHHTTCHHHHHHHHHHSGGGSSCSH
T ss_pred CceEEEEEEccccchhhhhhccCCHH--HHHHHHHhcCCccHHHHHHHHH---HHHHHcCCHHHHHHHHHhCccccccCH
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMY 176 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 176 (605)
.+.+.+-..=...|+..--+..|..+.+.| +.+..-=.-+.+.....|+.+..+. ++.+..+..+......+
T Consensus 396 ~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llek---Wl~e~KL~~SEeLGDlv---- 467 (494)
T 1bpo_A 396 DTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEK---WLKEDKLECSEELGDLV---- 467 (494)
T ss_dssp HHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHH---HHHHTCSCCCHHHHHHH----
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHH---HHhcCCccccHHhHhhh----
Q ss_pred HcCCCHHHHHHHHHhcCCCC
Q 007396 177 GKCEKVEFASAIFKQMDQKS 196 (605)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~~ 196 (605)
+..+..-|..+|.+...++
T Consensus 468 -k~~d~~LAl~IY~~a~~~~ 486 (494)
T 1bpo_A 468 -KSVDPTLALSVYLRANVPN 486 (494)
T ss_dssp -HHHCSHHHHHHHHHHCCCC
T ss_pred -hhcCHHHHHHHHHHcCCcH
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.42 E-value=95 Score=23.11 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHH
Q 007396 180 EKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECL 217 (605)
Q Consensus 180 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 217 (605)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888999999999888888999888887667655543
No 321
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=24.23 E-value=21 Score=21.73 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=9.9
Q ss_pred cccccCCcchhh
Q 007396 561 NLRMCNDCHTYT 572 (605)
Q Consensus 561 ~~~~~~~~~~~~ 572 (605)
++|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998644
No 322
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.80 E-value=3e+02 Score=22.49 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh
Q 007396 113 EEALFLYNEMFERGVEPDNF-TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLF 167 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 167 (605)
+++.++|..|...|+--... .|..-...+-..|++.+|.+++..-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 45788888888877665443 45555566667788888888888888877766433
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.00 E-value=1.6e+02 Score=26.05 Aligned_cols=56 Identities=14% Similarity=-0.075 Sum_probs=31.1
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhH-------HHHHHHHHh--ccCChhhHHHHHHHHH
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESI-------LVSVLSACT--HLGALDLGKCTHGSLI 260 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~~ 260 (605)
+...++.|+.+....+++.+...| ..++... .+.+..|+. +.|..+.++.+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 334456677777777777666655 4554332 233333332 5677766666655443
No 324
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.91 E-value=6.5e+02 Score=26.08 Aligned_cols=367 Identities=10% Similarity=-0.011 Sum_probs=187.2
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHH--HHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKE--GMQIH 154 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~--a~~~~ 154 (605)
+.+++......+.. +..+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.|.+.. ..+=+
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 67778877776665 32344444456667777888877887777776665 3344557777777776554332 22222
Q ss_pred HHHHHhC-----------CCCch-hHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh---HHHHHHHHHHHCCChhHHHHH
Q 007396 155 GHVFKVG-----------FECDL-FVQNSLINMYGKCEKVEFASAIFKQMDQKSVA---SWSAIIAAHASNGLWSECLKL 219 (605)
Q Consensus 155 ~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~ 219 (605)
..+...| +.++. .....++..+.+-.. +....... .++.. ....-+.-+++ .+.+.|..+
T Consensus 162 ~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~ 236 (618)
T 1qsa_A 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLM 236 (618)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHH
Confidence 2333322 11111 122223332222222 22222221 11111 11112333333 378999999
Q ss_pred HHHHHhCCCCCCChhHHHHH----HHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 220 FGEMNNEKCWRPEESILVSV----LSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 220 ~~~m~~~g~~~p~~~t~~~l----l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
|....... ..+......+ .......+....+...+..........+. ..-.+....+.|+++.|...|+.|.
T Consensus 237 ~~~~~~~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~r~Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 237 IPSLAQAQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL--IERRVRMALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHhhhhcc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH--HHHHHHHHHHCCCHHHHHHHHHHcc
Confidence 98887544 2333332222 22333344244555555554443323222 3334444567899999999999997
Q ss_pred CCCe--eeH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---
Q 007396 296 DKCQ--LTY-SVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT--- 369 (605)
Q Consensus 296 ~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--- 369 (605)
.... .-| -=+..++...|+.++|..+|+++.. + .+|-.++.+ .+.|.... +. .....+.
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~--~~fYg~lAa-~~Lg~~~~-------~~-~~~~~~~~~~ 377 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q--RGFYPMVAA-QRIGEEYE-------LK-IDKAPQNVDS 377 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S--CSHHHHHHH-HHTTCCCC-------CC-CCCCCSCCCC
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CChHHHHHH-HHcCCCCC-------CC-CCCCChhHHh
Confidence 6421 111 1234567788999999999999874 2 244444422 22222100 00 0000010
Q ss_pred h---HHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC---CCCchHHHHH
Q 007396 370 V---QHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINS---HHPSDYVLLS 443 (605)
Q Consensus 370 ~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~ 443 (605)
. ..--.-+..+.+.|...+|...+..+.-..+......+.......|..+.+.....+....+. .-|..|...+
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i 457 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLF 457 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHH
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHH
Confidence 0 011233456778899999988877762223434334444445677888877766544322220 0134566677
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 444 NMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
.-+++.-.++...-.---..|.+..|
T Consensus 458 ~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 458 KRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 77776665555433222233555544
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.75 E-value=2.2e+02 Score=22.53 Aligned_cols=59 Identities=5% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHCCCCCCcchHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 122 MFERGVEPDNFTFPALFKACAKLQ-ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 122 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
|.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455444332 22333443333 344455566655555544444444444455555443
No 326
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.39 E-value=2.6e+02 Score=23.96 Aligned_cols=171 Identities=7% Similarity=-0.030 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHhh----cCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--------CcchHHHHHHHHHcc
Q 007396 77 HWGSMDYACSIFRQ----IDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP--------DNFTFPALFKACAKL 144 (605)
Q Consensus 77 ~~g~~~~A~~~f~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--------~~~t~~~ll~~~~~~ 144 (605)
+.|+.+....+++. ...+|..-++.|..+..... .++.+.+.+.|..+ |..-.+.+..++...
T Consensus 12 ~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 86 (232)
T 2rfa_A 12 KENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDN-----LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86 (232)
T ss_dssp HTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred HcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC
Q ss_pred CChHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHcCCCHHHHHHHHHhcCCCChh--HHHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLF---------------VQNSLINMYGKCEKVEFASAIFKQMDQKSVA--SWSAIIAAH 207 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~---------------~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~ 207 (605)
. .++.+.+++.|..++.. ...+.+...++.|+.+-+..+++.-...+.. .-.+-+...
T Consensus 87 ~-----~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 87 N-----VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp C-----HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred C-----HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHhccCChhhHHHHHHH
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPE--------ESILVSVLSACTHLGALDLGKCTHGS 258 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~ 258 (605)
+..|+.+-+..+++.+.+.| ..++ ...-.+.+...+..|+.+.++.+++.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.02 E-value=3.4e+02 Score=22.48 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhH
Q 007396 113 EEALFLYNEMFERGVEPDNF-TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFV 168 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 168 (605)
+++.++|..|...|+--... .|..-...+-..|++.+|.++|..-++.+-.|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 44777888888887665544 455555566677888888888888888877775443
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.00 E-value=1.7e+02 Score=25.16 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=5.3
Q ss_pred HHHHHHcCCCCC
Q 007396 322 FSEMLREGLEPD 333 (605)
Q Consensus 322 ~~~m~~~g~~p~ 333 (605)
++.+.+.|..++
T Consensus 188 v~~Ll~~ga~~~ 199 (231)
T 3aji_A 188 AKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHTTCCSC
T ss_pred HHHHHHCCCCCC
Confidence 333444455443
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.91 E-value=1.8e+02 Score=23.55 Aligned_cols=61 Identities=7% Similarity=0.041 Sum_probs=33.8
Q ss_pred HHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 121 EMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 121 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
.|.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3555666544432 234445545455556777777777766655555555556666666653
No 330
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.71 E-value=2.4e+02 Score=20.53 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHH
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 216 (605)
...+++.+.+.|+-. ..-+..+- +.....+.|.++++.++.++..+|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 345666777776542 22222222 2357788999999999999989999999988887764433
No 331
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.85 E-value=4.5e+02 Score=23.38 Aligned_cols=17 Identities=0% Similarity=-0.375 Sum_probs=7.2
Q ss_pred ChHHHHHHHHHHHhcCC
Q 007396 369 TVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~ 385 (605)
+..+-...+.++++.|.
T Consensus 205 ~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333444444444443
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.80 E-value=1.6e+02 Score=24.28 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=42.5
Q ss_pred hHHHHHHHH-HHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHcCCCH
Q 007396 113 EEALFLYNE-MFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKV--GFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 113 ~~A~~l~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~ 182 (605)
+.+++-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 34557776543 345566666666666788888888777 6655655555556777777754
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.39 E-value=2.6e+02 Score=26.32 Aligned_cols=81 Identities=9% Similarity=-0.057 Sum_probs=35.2
Q ss_pred HHHhcCCHHHHHHHHHHCC------CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 379 LMGRAGMLGEALELIQSMP------IQ-QNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~------~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
.-++.|+.+-+..+++.-. +. .|...+..|. .....|+.+....+++.-...+..+..-... +...+..|+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp-L~~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVP-LYLSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH-HHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhCh
Confidence 3445677777766666531 11 1222222232 2345666665544443221111112211112 223345577
Q ss_pred hhHHHHHHHH
Q 007396 452 WYDVAKIRTE 461 (605)
Q Consensus 452 ~~~a~~~~~~ 461 (605)
.+-+.-+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666555554
No 334
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.32 E-value=6.2e+02 Score=27.90 Aligned_cols=121 Identities=6% Similarity=-0.064 Sum_probs=72.1
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhH------HHHHHHHHhc
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESI------LVSVLSACTH 245 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t------~~~ll~a~~~ 245 (605)
++.-+...|..+-|.++..-++. +...--.+..+|...|++++|...|++.- .| +..+... ...++...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~g-l~~~~~~~~~~~~~~~ll~~~-- 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LV-LYSHTSQFAVLREFQEIAEKY-- 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CT-TCSSCCSCGGGHHHHHHHHHT--
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hh-cccCcccccchhhhhhccCcc--
Confidence 56667778888888877766664 44433456778999999999999998863 23 3322111 11111110
Q ss_pred cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhc----cCCCCe----eeHHHHHHHHHhcC
Q 007396 246 LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRM----MADKCQ----LTYSVMISGLAMHG 313 (605)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~----m~~~~~----~~~~~li~~~~~~g 313 (605)
+ .......-|..++..+-+.+.++.+.++-+. +...|. ..|+.+..+.+..|
T Consensus 891 ---------------e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 ---------------H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ---------------T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 0112234677788888888888776655442 323332 35777777666544
No 335
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.10 E-value=3.1e+02 Score=21.91 Aligned_cols=41 Identities=5% Similarity=-0.004 Sum_probs=16.5
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHh
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACT 244 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~ 244 (605)
++..+...+..-.|.++++.+.+.+ ...+..|.--.|..+.
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFR 67 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHH
Confidence 3333333333444444444444443 3333334333333333
Done!