Query 007398
Match_columns 605
No_of_seqs 299 out of 3006
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 00:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 5.6E-52 1.9E-56 444.4 42.2 416 68-562 4-431 (445)
2 3gia_A Uncharacterized protein 100.0 3.4E-50 1.2E-54 430.4 40.5 365 69-448 3-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 1.6E-49 5.4E-54 432.9 43.5 434 66-562 5-468 (511)
4 2jln_A MHP1; hydantoin, transp 99.4 5.1E-10 1.7E-14 119.9 35.7 281 70-377 23-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.7 2.4E-05 8.2E-10 84.3 34.1 288 71-382 19-353 (530)
6 2xq2_A Sodium/glucose cotransp 98.7 0.00016 5.3E-09 79.0 39.7 283 71-374 48-377 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.8 0.038 1.3E-06 58.5 31.9 236 75-314 10-291 (519)
8 4ain_A Glycine betaine transpo 96.1 0.79 2.7E-05 48.1 21.9 25 70-94 92-116 (539)
9 2wsw_A BCCT family betaine/car 93.7 7.8 0.00027 40.4 32.6 25 70-94 87-111 (509)
10 4djk_A Probable glutamate/gamm 77.8 38 0.0013 35.2 15.2 33 502-534 392-428 (511)
11 2l2t_A Receptor tyrosine-prote 43.4 22 0.00076 23.3 3.1 14 549-562 25-38 (44)
12 2ks1_B Epidermal growth factor 39.9 27 0.00091 22.9 3.1 14 549-562 26-39 (44)
13 2i68_A Protein EMRE; transmemb 21.9 3.4E+02 0.012 22.4 8.8 10 521-530 67-76 (137)
14 2jwa_A Receptor tyrosine-prote 20.2 1.9E+02 0.0065 18.8 4.7 14 549-562 26-39 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=5.6e-52 Score=444.37 Aligned_cols=416 Identities=22% Similarity=0.285 Sum_probs=353.4
Q ss_pred cccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhh
Q 007398 68 HEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147 (605)
Q Consensus 68 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 147 (605)
++.||++++++++++.++.++|+|+|..++... . +|+.++++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~-~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA-S-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH-H-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH-H-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 456899999999999999999999999988753 4 68888999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 148 GDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 148 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
||.+|++.||.+++.+....+.....++++++..++...+.+. ..+++++++++++.+|++|+|..++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWV------------LTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHH------------HHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHH------------HHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999999999888888888888766543222222 2367888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCC-ccCCCC---hhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHH
Q 007398 228 FNYIASIIHVIVILFIIIGGFANADTKNYK-AFAPFG---TRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLV 303 (605)
Q Consensus 228 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~ 303 (605)
++.+++.++++.++++++.++.+.+.+++. ++.+.+ +.+++.++...+|+|.|+|..++++||+|||+|++||+++
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~ 229 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence 999999999999988888887766655542 333333 5578889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 007398 304 GSMAVTTLAYCLLAIALCLMQPYYAIN-VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHM 382 (605)
Q Consensus 304 ~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~ 382 (605)
.++.++.++|++..++.....|.+++. .++|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||.
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 309 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL 309 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999988888764 4679999999887788888999999999999999999999999999999999
Q ss_pred CchhhhhhcCCCcchhHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccch
Q 007398 383 MPPWLAQVHGKTGTPVNATIVMLTATAIIAFF-------TKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSGVTTTANQ 455 (605)
Q Consensus 383 lP~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~ 455 (605)
+|++|+|+| |+++|+++++++.+++.++.++ ..++.+.++.++..++.|.+.+++++++|+|+| ++|
T Consensus 310 lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r---- 383 (445)
T 3l1l_A 310 FPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKA---- 383 (445)
T ss_dssp SCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGG----
T ss_pred CcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc----
Confidence 999999999 6799999999999988766654 347899999999999999999999999887755 221
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhc
Q 007398 456 VKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGVPLVPWLPSASIAINIFLLGS 535 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 535 (605)
.|..|+.+.++.+.+++++..
T Consensus 384 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 404 (445)
T 3l1l_A 384 -----------------------------------------------------------RPAYLAVTTIAFLYCIWAVVG 404 (445)
T ss_dssp -----------------------------------------------------------CTTTHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------cchhHHHHHHHHHHHHHHHHH
Confidence 123556777777777777777
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 536 IDRASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 536 ~~~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
.++.......+++++++.+|+.++||+
T Consensus 405 ~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 405 SGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777788888999999998776655
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=3.4e-50 Score=430.36 Aligned_cols=365 Identities=21% Similarity=0.396 Sum_probs=327.6
Q ss_pred ccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhC
Q 007398 69 EMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELG 148 (605)
Q Consensus 69 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g 148 (605)
+.||+++.+++++++++.++|+|+|..++..... +||..+++|+++++++++.+++++|+++++|++||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 3589999999999999999999999999887766 888999999999999999999999999999999999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhH
Q 007398 149 DF-VAFVAAGNILLEYVIGGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSR 227 (605)
Q Consensus 149 ~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 227 (605)
|. .+...+|.+++.|....+.++..+++++...++...+.+.. .+++++++++++.+|++|+|..++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNI------------AITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH------------HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH------------HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 96 35556899999999999999999999999888654433322 267888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCc-cCCCChhHHHHHHHHHHHHhhhhhhHhhhhhhhcCCCCchhhHHHHHH
Q 007398 228 FNYIASIIHVIVILFIIIGGFANADTKNYKA-FAPFGTRGVFKASAVLFFAYIGFDAVSTMAEETKNPAKDIPIGLVGSM 306 (605)
Q Consensus 228 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~vp~ai~~~~ 306 (605)
++.+++.++++.++++++.++...+.+|+.+ +.+.++.+++.++...+|+|.|+|..++++||+|||+|++||++..++
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHH
Confidence 9999999999999988888888777777665 445567788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccC--CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCc
Q 007398 307 AVTTLAYCLLAIALCLMQPYYAIN--VDAPFSVAFEAVGWDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMP 384 (605)
Q Consensus 307 ~~~~v~y~l~~~~~~~~~~~~~~~--~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~lP 384 (605)
.++.++|++..++.....|.+++. .+.|+.++++...+++...++.+..+++.+++.++.+++.||++++|||||.+|
T Consensus 230 ~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 309 (444)
T 3gia_A 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP 309 (444)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999998888887763 346888888877678888899999999999999999999999999999999999
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007398 385 PWLAQVHGKTGTPVNATIVMLTATAIIAFFTKLNVLSNLLSISTLFIFMLVAVALLVRRYYVSG 448 (605)
Q Consensus 385 ~~f~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~ 448 (605)
++|+|+| | ++|.++++++++++.++.++.+++.+.++.+.+.+++|.+.+++++++|+++++
T Consensus 310 ~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 310 EFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp SSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999998 4 569999999999999888888999999999999999999999999998887654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.6e-49 Score=432.93 Aligned_cols=434 Identities=18% Similarity=0.227 Sum_probs=324.9
Q ss_pred cccccccccChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHHHHH-HHHHHHHhhhhh--ccccCCchhhh
Q 007398 66 SEHEMKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSGLSA-MLSVFCYTEFAV--EIPVAGGSFAY 142 (605)
Q Consensus 66 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~a~~~ael~s--~~P~~GG~y~~ 142 (605)
++++++|+++++++++++++.++|. +..+. . ..+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMAV--YEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCCG--GGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHhh--chhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 5677899999999999999999863 33332 2 338888777777777665 569999999999 999 9999999
Q ss_pred hhhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHH
Q 007398 143 LRVELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLCNK---QPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAV 219 (605)
Q Consensus 143 ~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (605)
+++.+||.+|+++||.++++++...+......+.++...+.. ..+.|. ..+++++++++++.+|+
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------~~~~~~~~~~~~~~in~ 146 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPIT------------KTIAALIILWALALTQF 146 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSH------------HHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHH------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888888655311 112222 34778888999999999
Q ss_pred hcchhhhHHHHHHHHHHHH-HHHHHHHHhhhccc---c----CCCCccCCCC-hhHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007398 220 VSTKGSSRFNYIASIIHVI-VILFIIIGGFANAD---T----KNYKAFAPFG-TRGVFKASAVLFFAYIGFDAVSTMAEE 290 (605)
Q Consensus 220 ~g~~~~~~~~~~~~~~~l~-~~~~~~i~~~~~~~---~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E 290 (605)
+|+|..++++++.+.++++ .++++++.++.... . .+..++.|+. ..+.+.++...+|+|.|+|.+++++||
T Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E 226 (511)
T 4djk_A 147 GGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNE 226 (511)
T ss_dssp TCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSS
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999888544 35455555543221 1 1222333321 123445677789999999999999999
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH----HHhC--hhHHHHHHHHHHHHHHHHHHH
Q 007398 291 TKNPAKDIPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAF----EAVG--WDWAKYVVAFGALKGMTTVLL 364 (605)
Q Consensus 291 ~k~p~r~vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~----~~~g--~~~~~~~~~~~~~~~~~~~~~ 364 (605)
+|||+|++|||++.++.++.++|++..+++....|+++...+++..+.+ +..| .++...++.+..+++.+++.+
T Consensus 227 ~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
T 4djk_A 227 MSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIA 306 (511)
T ss_dssp SSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988876655544433 3455 577888999999999999999
Q ss_pred HHhhhhhHHHHHHHhcCCCchhhhhhcCCCcchhHHHHHHHHHHH-HHHHhhc--------HHHHHHHHHHHHHHHHHHH
Q 007398 365 VSAVGQARYLTHIARTHMMPPWLAQVHGKTGTPVNATIVMLTATA-IIAFFTK--------LNVLSNLLSISTLFIFMLV 435 (605)
Q Consensus 365 ~~~~~~sR~l~a~Ardg~lP~~f~~~~~r~~~P~~ai~~~~~~~~-~~~~~~~--------~~~l~~~~~~~~~~~y~~~ 435 (605)
+.+++.||++++|||||.+|++|+|+| |+++|++|++++.++.. .+..+.+ ++.+.++.+++.+++|.+.
T Consensus 307 ~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~ 385 (511)
T 4djk_A 307 SWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFML 385 (511)
T ss_dssp HHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 57999999999854433 3333333 7899999999999999999
Q ss_pred HHHHHHHhhhcCCCccccchhHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 007398 436 AVALLVRRYYVSGVTTTANQVKLIVCILLILISSIATAAYWGLSKHGWIGYCITVPIWFLGTLYLAVFVPQARAPKLWGV 515 (605)
Q Consensus 436 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (605)
+++++++|+|+++.+||++ .+.++++.+.++++.+++.++..++.++|+..+....
T Consensus 386 ~~~~~~~r~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--- 441 (511)
T 4djk_A 386 FIGYIVLVLKHPDLKRTFN---------------------IPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDS--- 441 (511)
T ss_dssp HHHHHHHHHHCCSCCCSCC---------------------CSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCC---
T ss_pred HHHHHHHHHhCCCCCCCee---------------------cCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCc---
Confidence 9999999988877777655 2333445456788888888888888888876332221
Q ss_pred ccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 007398 516 PLVPWLPSASIAINIFLLGSIDRASFARFGVWTVILLLYYIFFGLHA 562 (605)
Q Consensus 516 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 562 (605)
++||.. ...+++++++.++|+.|++++
T Consensus 442 -------------------~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 468 (511)
T 4djk_A 442 -------------------TDMYVE-LLVVSFLVVLALPFILYAVHD 468 (511)
T ss_dssp -------------------CCCHHH-HHHHHHHHHHHHHHHHHHCC-
T ss_pred -------------------hHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 445544 345555566666676654433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.42 E-value=5.1e-10 Score=119.93 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=154.9
Q ss_pred cccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch---HHHHHHHHHHHHHHHHHHHhhhhhccccCCc-hhhhhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA---VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGG-SFAYLRV 145 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~a~~~ael~s~~P~~GG-~y~~~~~ 145 (605)
.+|+.++++.+.+=++..+..+.+..-+... .|.. .+++.+++.++.... .+-++..-|+.|- .....+.
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~---~GLs~~~a~lai~lG~li~~~~---~~l~~~~G~~~Gl~~~v~~R~ 96 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT---SSFQVWQVIVAIAAGCTIAVIL---LFFTQSAAIRWGINFTVAARM 96 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT---TTSCHHHHHHHHHHHHHHHHHH---HHHHTHHHHHHCCCHHHHTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCcCHHHHHHHHHHHHHHHHHH---HHHHhHHHhhcCCChhhhhHh
Confidence 3577899999999888887766654333322 2432 444445444444433 3334444444443 4457888
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhc
Q 007398 146 ELGDFVAFVAAGNILLEYVIGGAAVARSWTSYFATLC----NKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVS 221 (605)
Q Consensus 146 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 221 (605)
.||+..+.+......+..+...+......++.+...+ +..+ . .+..+++.++...+.+.|
T Consensus 97 ~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~-~---------------~v~~~i~~~l~~~~~~~G 160 (501)
T 2jln_A 97 PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN-L---------------PLWIVIFGAIQVVTTFYG 160 (501)
T ss_dssp TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-H---------------HHHHHHHHHHHHHHHTTH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-H---------------HHHHHHHHHHHHHHHHhC
Confidence 9999999888887777777666776666666665554 3221 1 133444555666777899
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhcccc--CCCCccCC-CChhHHHHHHHHH-HHHhhhhhhHhhhhhhhcCCCCc
Q 007398 222 TKGSSRFNYIASIIHVIVILFIIIGGFANADT--KNYKAFAP-FGTRGVFKASAVL-FFAYIGFDAVSTMAEETKNPAKD 297 (605)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~~-~~~~~G~e~~~~~a~E~k~p~r~ 297 (605)
.|...+++++...+.++.++.+.+..+...+. ++.....+ ....+++.++..+ .+...+.-..+.++.+.|+++..
T Consensus 161 ~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~ 240 (501)
T 2jln_A 161 ITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNA 240 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccc
Confidence 99999999999888877776666555544332 11111111 1122344444332 22223334567888888886541
Q ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHhChhHH-HHHHH-HHHHHHHHHHHH
Q 007398 298 -----------IPIGLVGSMAVTTLAYCLLAIALCLMQPYYAINVDAPFSVAFEAVGWDWA-KYVVA-FGALKGMTTVLL 364 (605)
Q Consensus 298 -----------vp~ai~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~ 364 (605)
.-++...+..+...+..+..+..... ....+|...+.+...++.. ..+.. +.++++.+++..
T Consensus 241 ~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~ 315 (501)
T 2jln_A 241 SREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNP 315 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333332222222221111 1233465544443433322 55566 667777766655
Q ss_pred H-HhhhhhHHHHHH
Q 007398 365 V-SAVGQARYLTHI 377 (605)
Q Consensus 365 ~-~~~~~sR~l~a~ 377 (605)
. .+++.+--+..+
T Consensus 316 ~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 316 AANLLSPAYTLCST 329 (501)
T ss_dssp HHHTHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHh
Confidence 3 566666555544
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.74 E-value=2.4e-05 Score=84.28 Aligned_cols=288 Identities=14% Similarity=0.063 Sum_probs=140.1
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
.|+++++-..+-..++.++...+......... .|.. ..+.|. +++.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 58899998887777777765555443333333 4544 333332 2222223333333333332 344689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 150 FVAFVAAGNILLEYVI-GGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
....+.+....+.+.. ..+......+..++..++.+. + ..+.+..++.......-|.|...+.
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~--~--------------~~i~i~~~i~~~Yt~~GGl~aV~~T 159 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL--M--------------YSILGLALFALVYSIYGGLSAVVWT 159 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCH--H--------------HHHHHHHHHHHHTTC------CCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 8887777665554433 334444455566677665421 1 0111111122222334588887777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc----------------ccCCCCcc----CC-----CChhHHHHHHHHHHHHhhhhhh
Q 007398 229 NYIASIIHVIVILFIIIGGFANA----------------DTKNYKAF----AP-----FGTRGVFKASAVLFFAYIGFDA 283 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~~~G~e~ 283 (605)
+.+-.++.++..+++.+.++... +++++..+ .+ .++...+.+.......|.|.+.
T Consensus 160 D~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q 239 (530)
T 3dh4_A 160 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 239 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCH
Confidence 77766666655444333322110 11111111 01 1122112222222334455443
Q ss_pred -HhhhhhhhcCCCCchhhHHHHHHHHHHHHHHH---HHHHHHhccc----------------ccccCCCChHHHHHHHhC
Q 007398 284 -VSTMAEETKNPAKDIPIGLVGSMAVTTLAYCL---LAIALCLMQP----------------YYAINVDAPFSVAFEAVG 343 (605)
Q Consensus 284 -~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l---~~~~~~~~~~----------------~~~~~~~~p~~~~~~~~g 343 (605)
..+-.=..||+ |+..|+.+.+.....++.++ ..++.....+ ++..+.+..++...+ ..
T Consensus 240 ~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~l 317 (530)
T 3dh4_A 240 YIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FL 317 (530)
T ss_dssp HHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TC
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-Hc
Confidence 33444446775 56778877776554332211 1111111110 112234556666665 55
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 007398 344 WDWAKYVVAFGALKGMTTVLLVSAVGQARYLTHIARTHM 382 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~Ardg~ 382 (605)
+++..-++..+++.+.+++..+.+++.|-.+ ++|=.
T Consensus 318 p~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Diy 353 (530)
T 3dh4_A 318 PVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 353 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHHH
Confidence 5677777777777778888777777776553 35543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.71 E-value=0.00016 Score=79.02 Aligned_cols=283 Identities=13% Similarity=0.058 Sum_probs=141.6
Q ss_pred ccccChHHHHHHHhhhhccchhhhcchHhHhhhcCch-HHHHHHHHHHHHHHHHHHHhhhhhccccCCchhhhhhhhhCh
Q 007398 71 KKTLTWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPA-VVLSFVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRVELGD 149 (605)
Q Consensus 71 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 149 (605)
.|+++++-...-.+++.++...+......... .|.. ..+.|. ..+.....++.+...-.+. +.-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 47888886666555666665555433333223 4543 333332 2222233343344333333 344689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCcchhhccCCCCCcCchhHHHHHHHHHHHHHHHhcchhhhHH
Q 007398 150 FVAFVAAGNILLEYVI-GGAAVARSWTSYFATLCNKQPEDFRIIVHSMPEDYGQLDPIAVGVSAVICILAVVSTKGSSRF 228 (605)
Q Consensus 150 ~~g~~~g~~~~~~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 228 (605)
....+.+....+.+.. ..+......+..++..++.+. + ..+.+..++........|.|...+.
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~--~--------------~~i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL--M--------------YSILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHTTC---CCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH--H--------------HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 8887777655544433 344555555666777766421 1 0122222233344455788888887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc----------------cCCCCccCCCC--------hhHHHH-HHHHHHHHhhhhhh
Q 007398 229 NYIASIIHVIVILFIIIGGFANAD----------------TKNYKAFAPFG--------TRGVFK-ASAVLFFAYIGFDA 283 (605)
Q Consensus 229 ~~~~~~~~l~~~~~~~i~~~~~~~----------------~~~~~~~~~~g--------~~~~~~-~~~~~~~~~~G~e~ 283 (605)
+.+-.+++++..+++.+.++...+ ++.+..+.+.+ +..... +.......+.|.+.
T Consensus 189 D~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q 268 (593)
T 2xq2_A 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 268 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCCh
Confidence 777777666655444433222110 11111111111 111121 12222334555553
Q ss_pred -HhhhhhhhcCCCCchhhHHHHHHHHHHHHHHHHH---HHHHhc-cc--------------cccc-CCCChHHHHHHHhC
Q 007398 284 -VSTMAEETKNPAKDIPIGLVGSMAVTTLAYCLLA---IALCLM-QP--------------YYAI-NVDAPFSVAFEAVG 343 (605)
Q Consensus 284 -~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~l~~---~~~~~~-~~--------------~~~~-~~~~p~~~~~~~~g 343 (605)
..+-.=+.||+ |+..|+.+.+.....++.++.. ++.... .+ ..+. +.+..++... ...
T Consensus 269 ~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~l 346 (593)
T 2xq2_A 269 YIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFL 346 (593)
T ss_dssp SHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTS
T ss_pred HHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHc
Confidence 45566678886 6788888877665444333211 111111 00 1112 2344555555 566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007398 344 WDWAKYVVAFGALKGMTTVLLVSAVGQARYL 374 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 374 (605)
+++..-++..+.+.+.+++..+.+.+.|-.+
T Consensus 347 p~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 347 PVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777788888777777666553
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.82 E-value=0.038 Score=58.47 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=121.6
Q ss_pred ChHHHHHHHhhhhccchhhhcchHhHhhhcCchHHHHHHHHH----HHHHHHHHHHhhhhhccccCCchhhhhhhh---h
Q 007398 75 TWWDLIWFGIGAVIGAGIFVLTGQEARQEAGPAVVLSFVVSG----LSAMLSVFCYTEFAVEIPVAGGSFAYLRVE---L 147 (605)
Q Consensus 75 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~----~~~~~~a~~~ael~s~~P~~GG~y~~~~~~---~ 147 (605)
+..+-+.-++|..+|.|-.-..+....++||.+-++-+++.. +-.+..=+++.+.+++..+.|..-.|-+.. .
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~ 89 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRF 89 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcC
Confidence 455677778888899998889998888867765344444333 333333334444444344445444443211 1
Q ss_pred ChhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CC-----------cchhhccCCCCC------c-Cch
Q 007398 148 GDFVAF---VAAGNILLEYVIGGAAVARSWTSYFATLCN--KQ-PE-----------DFRIIVHSMPED------Y-GQL 203 (605)
Q Consensus 148 g~~~g~---~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~--~~-~~-----------~~~~~~~~~~~~------~-~~~ 203 (605)
.+..|+ +.+......|....+-....+...+...++ .. ++ .+...+ +.+++ . ...
T Consensus 90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l-~~~~~~~~~g~~~~~~ 168 (519)
T 2a65_A 90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYI-GVPKGDEPILKPSLFA 168 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHH-TCCSSSSCBCCCCHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHH-CCCCCcccccCccHHH
Confidence 122222 222222223322222222222222222211 11 00 011110 11100 0 112
Q ss_pred hHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHhhhcccc-------------CCCCccCCCChhHHHH
Q 007398 204 DPIAVGVSAVICILAVVST-KGSSRFNYIASIIHVIVILFIIIGGFANADT-------------KNYKAFAPFGTRGVFK 269 (605)
Q Consensus 204 ~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-------------~~~~~~~~~g~~~~~~ 269 (605)
.+.-.++.++...+...|+ |...|..+++...-.+.++++.+-++...++ .+++... +...+..
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~ 246 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHH
Confidence 2333444555666677899 6789999988777666666655554433220 1111111 1234777
Q ss_pred HHHHHHHHh-hhhhhHhhhhhhhcCCCCchhhHHHHHHHHHHHHHH
Q 007398 270 ASAVLFFAY-IGFDAVSTMAEETKNPAKDIPIGLVGSMAVTTLAYC 314 (605)
Q Consensus 270 ~~~~~~~~~-~G~e~~~~~a~E~k~p~r~vp~ai~~~~~~~~v~y~ 314 (605)
+...++|++ .|+.....++.-.|+ +.|++|.......+-..+-+
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 888899998 588888888888776 67888877766666554433
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=96.09 E-value=0.79 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.6
Q ss_pred cccccChHHHHHHHhhhhccchhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFV 94 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~ 94 (605)
-|-+++.++-++|.+++-+|.|+..
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 4567999999999999888888763
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=93.68 E-value=7.8 Score=40.41 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.8
Q ss_pred cccccChHHHHHHHhhhhccchhhh
Q 007398 70 MKKTLTWWDLIWFGIGAVIGAGIFV 94 (605)
Q Consensus 70 l~r~l~~~~~~~~~~~~~ig~gi~~ 94 (605)
-|-+++.++-++|.+++-+|.|+..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 3557899999999999888877554
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=77.84 E-value=38 Score=35.22 Aligned_cols=33 Identities=6% Similarity=0.112 Sum_probs=19.7
Q ss_pred HhccCCCCCCccccccccHH----HHHHHHHHHHHHh
Q 007398 502 VFVPQARAPKLWGVPLVPWL----PSASIAINIFLLG 534 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~ 534 (605)
.+.++++.+++||.|..|+. ++++++..++.+.
T Consensus 392 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (511)
T 4djk_A 392 LVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFI 428 (511)
T ss_dssp HHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHH
Confidence 34445567789999976553 4455555544443
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.38 E-value=22 Score=23.27 Aligned_cols=14 Identities=7% Similarity=0.339 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhcc
Q 007398 549 VILLLYYIFFGLHA 562 (605)
Q Consensus 549 ~i~~~~y~~~~~~~ 562 (605)
++.+.+|++++||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 44555555555554
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=39.89 E-value=27 Score=22.90 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhcc
Q 007398 549 VILLLYYIFFGLHA 562 (605)
Q Consensus 549 ~i~~~~y~~~~~~~ 562 (605)
++.+++|++++||+
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 44555555555554
No 13
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=21.95 E-value=3.4e+02 Score=22.44 Aligned_cols=10 Identities=0% Similarity=-0.399 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 007398 521 LPSASIAINI 530 (605)
Q Consensus 521 ~~~~~~~~~~ 530 (605)
.|+++.+...
T Consensus 67 ~pv~~~l~g~ 76 (137)
T 2i68_A 67 GIVLISLLSW 76 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 14
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.23 E-value=1.9e+02 Score=18.85 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhcc
Q 007398 549 VILLLYYIFFGLHA 562 (605)
Q Consensus 549 ~i~~~~y~~~~~~~ 562 (605)
++++++.++.+||+
T Consensus 26 i~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 26 VLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHhheehhh
Confidence 34444444444444
Done!